Citrus Sinensis ID: 004811

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73
Protein Sequence
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIELCYGT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccHHHHcccHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHcccHHHHHHcc
Coil and Loop (DISEMBL)
mpgiimddiheegvvselngnstpvkensvsnkspkstpcpqsprdqpdgegvdTSIEQLYENVcdmqssdqspsrhsfgsdgeesriDSELRHlvggemreveimeeeevekpeddshsissskkgsssgskksgkleksqsagtksissghskkvshsgmdsevssktnskgkslpekppidkgvkksnagatpmkkrkgklhkgqdvseagldkpglgpLLLKQARELISSGDNPQKALELALRAAKSfeigangkpsLELVMCLHVIAAIYCSlgqyneaipvleqsieipvieeGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQkqvlgetdprvGETCRYLAEAHVQALQFSEAQKFCQMALDIhkdngspaslEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAndqdaevasvdcsigdtylslsrydEAGFAYQKALTAFktnkgenhpaVASVFVRLADMYNrtgklreskSYCENALRiyekpvpgvppeeiasgltdVSSIYESMNELEQAIKLLQKALKIyndapgqqstvAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEqecgpyhpdtlgvysnLAGTYDAIGRLDDAIEILEFVVGIREeklgtanpdvdDEKRRLAELLKEAGRVRSRKAQSLETLLDANsrvnndgielcygt
Flexible Loop (DISEMBL)
mpgiimddihEEGVVSelngnstpvkensvsnkspkstpcpqsprdqpdGEGVDTSIEQLYENVCDMQSSDQSPSRhsfgsdgeesridsELRHLVGGEMREVEIMEeeevekpeddshsissskkgsssgskksgkleksqsagtksissghskkvshsgmdsevssktnskgkslpekppidkgvkksnagatpmkkrkgklhkgqdvseagldkpgLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAfktnkgenhpAVASVFVRLADMYNRtgklresksyCENALRIyekpvpgvppeEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIReeklgtanpdvddeKRRLAELLKeagrvrsrkaqsletlldansrvnndgielcygt
Low Complexity Region (SEG)
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGemreveimeeeevekpeDDshsissskkgsssgskksgkleksqsAGTksissghskkvshsgMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAgldkpglgplllkQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIELCYGT
Disordered region (IsUnstruct)
***************************************************************************************************************************************************************************************************************************************************LALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH**************RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV****IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE*******************************************************
Disordered Region (DISOPRED)
*PGI****I************************************************EQLYE***********************SRIDSELRHLVGGEMREV***********************GSSSGSKKSGKLE*******************************N*****LPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS**NNDG****YG*
Disordered Region (DISEMBL)
MPGIIMDDIHEEGVVSELNGN******************************GVDTSIEQLYENVC***********************DSELRHLVGGEMREVEIM*************************************************************************KPPIDKG*************************EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIELCYGT
Disordered Region (DISPRO)
********IHE***********************************QPDGEGVDTSIEQLYENVCDMQ******************RIDSELRHLVGGEMREVEIMEEEEVEK****************************************************************************************************GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIELCYGT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDxxxxxxxxxxxxxxxxxxxxxxxxxxxxPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDxxxxxxxxxxxxxxxxxxxxxKAQSLETLLDANSRVNNDGIELCYGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	729	2.2.26 [Sep-21-2011]
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.334	0.183	0.240	7e-14
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.337	0.187	0.232	9e-13
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.334	0.184	0.229	6e-12
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.358	0.200	0.226	2e-11
Q5PQM2	619	Kinesin light chain 4 OS=	no	no	0.215	0.253	0.276	1e-10
Q9DBS5	619	Kinesin light chain 4 OS=	no	no	0.213	0.252	0.278	3e-10
P46822	540	Kinesin light chain OS=Ca	no	no	0.322	0.435	0.254	3e-10
Q9NSK0	619	Kinesin light chain 4 OS=	no	no	0.215	0.253	0.270	6e-10
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.355	0.198	0.229	7e-10
Q2HJJ0	616	Kinesin light chain 4 OS=	no	no	0.213	0.253	0.265	9e-10

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 35/279 (12%)

Query: 438  IGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
            + D Y +L R+        +A    Q++L   +T    +HP VA    +LA +Y +  K 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 491  RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
              ++   + AL I E    G      A  L  ++++Y+  N+ EQA    +K+ KI+  A
Sbjct: 1002 GNAEQLYKQALEISENAY-GADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKA 1060

Query: 551  PGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFKNAI 585
              ++  + G                            ++GV+YY+  N   +    K ++
Sbjct: 1061 IKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNELGVLYYLQNNLETADQFLKRSL 1120

Query: 586  S-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
              + R +G         +LN +   C ++   ++A EL+E A  I  +   P HP     
Sbjct: 1121 EMRERVLGPDHPDC-AQSLNNLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYT 1179

Query: 645  YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683
              +LA  Y  +G+LD A+ + E  V IR++  G  +P V
Sbjct: 1180 VKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSV 1218

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Homo sapiens (taxid: 9606)

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 119/279 (42%), Gaps = 33/279 (11%)

Query: 437  SIGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
            S+ D Y +L R+        +A    Q++L   +T    +HP+VA    +LA +Y ++ K
Sbjct: 925  SLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQSKK 984

Query: 490  LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
               ++   + AL I E    G     +A  L  ++ +Y+  N+ EQA +L +K+LKI   
Sbjct: 985  FGNAEQLYKQALEISENAY-GSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQK 1043

Query: 550  APGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFKNA 584
            +  ++ ++ G                            ++GV+YY+  N   +    K +
Sbjct: 1044 SARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRS 1103

Query: 585  ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
            +     +          ++N +     ++   ++A EL+E A  I  +   P HP     
Sbjct: 1104 LEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYT 1163

Query: 645  YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683
              +LA  Y   G+LD A+ + E  V IR++  G  +P V
Sbjct: 1164 VKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSV 1202

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus tropicalis (taxid: 8364)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 35/279 (12%)

Query: 438  IGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
            + D Y +L R+        +A    Q++L   +T    +HP VA    +LA +Y +  K 
Sbjct: 937  LADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQLAGVYVQWKKF 996

Query: 491  RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
             +++   + AL I E    G      A  L  ++++Y   N+ EQA    +K++ I   A
Sbjct: 997  GDAEQLYKQALEISENAY-GADHPHAARELEALATLYHKQNKYEQAEHFRKKSVIIRQQA 1055

Query: 551  PGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFKNAI 585
              ++ ++ G                            ++GV+Y++  N   +    K ++
Sbjct: 1056 TRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVLYFLQNNLETAEQFLKRSL 1115

Query: 586  S-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
              + R +G         +LN +   C ++    +A EL+E A  I  +   P HP     
Sbjct: 1116 EMRERVLGPDHPDC-AQSLNNLAALCNEKKQYEKAEELYERALDIRRRALAPDHPSLAYT 1174

Query: 645  YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683
              +LA  Y   G++D A+ + E  V IR++  G  +P V
Sbjct: 1175 VKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSV 1213

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 135/336 (40%), Gaps = 75/336 (22%)

Query: 437  SIGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
            S+ D Y +L R+        +A    Q++L   +T    +HP+VA    +LA +Y ++ K
Sbjct: 914  SLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQSKK 973

Query: 490  LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
               ++   + AL I E    G     +A  L  ++ +Y+  N+ EQA +L +K+LKI   
Sbjct: 974  FGNAEQLYKQALEISENAY-GSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQK 1032

Query: 550  APGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFK-- 582
            +  ++ ++ G                            ++GV+YY+  N   +    K  
Sbjct: 1033 SARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRS 1092

Query: 583  -------------------NAISKL---------------RAIGERKSAF------FGVA 602
                               N ++ L               RA+  R+ A           
Sbjct: 1093 LEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYT 1152

Query: 603  LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
            +  + +   ++  +++AV L+E A  I ++  GP HP       NLA  Y  + + DDA+
Sbjct: 1153 VKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDAL 1212

Query: 663  EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
             + E  + I E+ LG  +P V +  + LA L  E G
Sbjct: 1213 PLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEG 1248

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus laevis (taxid: 8355)

>sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYER 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G  +  VA  +  +   Y   G YS++   +K  +++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYSEAETLYKEILTR 408

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYES 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
             G  +  VA  +  +   Y   G YS++   +K  ++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILT 407

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Mus musculus (taxid: 10090)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 347 PRVGETCRYLA-----EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           P   ET + L      E  + A QF++     QMA   +     PA L     R L  L+
Sbjct: 159 PVTNETLQELGFGPEDEEDMNASQFNQPTPANQMAASANVGYEIPARL-----RTLHNLV 213

Query: 402 CE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            +  ++G +E A  L    L  +   +     +VA++   +   Y   ++Y EA     +
Sbjct: 214 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAANLLNE 273

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           AL+  +   GE+HPAVA+    LA ++ + GK ++++  C+ AL I EK V G    ++A
Sbjct: 274 ALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREK-VLGDDHPDVA 332

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGIEAQMGVMYYMLGNYSD 576
             L +++ + ++  + E+  K  ++AL+IY    G     VA  +  +   Y   G Y +
Sbjct: 333 KQLNNLALLCQNQGKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKE 392

Query: 577 SYDSFKNAISK 587
           + + +K  +++
Sbjct: 393 AEELYKQILTR 403

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEG 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G  +  VA  +  +   Y   G Y+++   +K  +++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 408

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 129/336 (38%), Gaps = 77/336 (22%)

Query: 438  IGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
            + + Y +L R+        +A    Q++L   +T    +HP+VA    +LA +Y    K 
Sbjct: 920  LANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVHWRKF 979

Query: 491  RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
              ++   + A+ I E    G     +A  L  +S +Y+  N+ EQA KL ++++KI    
Sbjct: 980  GNAEQLYKQAMEICENAY-GPEHSTVARELDSLSLLYQKQNKYEQAEKLRKRSVKIRQKT 1038

Query: 551  PGQQSTVAGIEA-------------------------QMGVMYYMLGN------------ 573
              Q+  + G                            ++GV+YY+  N            
Sbjct: 1039 ARQKGHMYGFALLKRRALQLEELTLGKDSTDCAKTLNELGVLYYLQNNLDAAKLFLTRSL 1098

Query: 574  ----------YSDSYDSFKNAISKL---------------RAIGERKSAF------FGVA 602
                      + D   S  N ++ L               RA+  RK A           
Sbjct: 1099 EMRQRVLGPDHPDCAQSLNN-LAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYT 1157

Query: 603  LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
            L  + +   +R  + +AV L+E A  I E+  GP HP       NLA  Y  + +  DA+
Sbjct: 1158 LKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVLYCQLKQHSDAL 1217

Query: 663  EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
             + E  + + E+ LG  +P V +  + LA L  E G
Sbjct: 1218 PLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEG 1253

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
           VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK 
Sbjct: 249 VATMLNILALVYRGQNKYKEAALLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKY 308

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
           +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  ++AL IY   
Sbjct: 309 KEAEPLCQRALEIREK-VLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQ 367

Query: 551 PGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            G  +  VA  +  +   Y   G Y+++   +K  +++
Sbjct: 368 LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 405

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	729
255540685	767	kinesin light chain, putative [Ricinus c	0.991	0.942	0.791	0.0
359491584	757	PREDICTED: uncharacterized protein LOC10	0.983	0.947	0.782	0.0
449477406	736	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.987	0.978	0.738	0.0
449440678	736	PREDICTED: uncharacterized protein LOC10	0.987	0.978	0.736	0.0
356507244	761	PREDICTED: uncharacterized protein LOC10	0.984	0.943	0.707	0.0
356518977	753	PREDICTED: uncharacterized protein LOC10	0.983	0.952	0.696	0.0
224133522	624	predicted protein [Populus trichocarpa]	0.850	0.993	0.772	0.0
357461993	767	Kinesin light chain [Medicago truncatula	0.986	0.937	0.664	0.0
359488843	710	PREDICTED: uncharacterized protein LOC10	0.950	0.976	0.678	0.0
357461995	795	Kinesin light chain [Medicago truncatula	0.986	0.904	0.664	0.0

>gi|255540685|ref|XP_002511407.1| kinesin light chain, putative [Ricinus communis] gi|223550522|gb|EEF52009.1| kinesin light chain, putative [Ricinus communis]

 Score = 1144 bits (2959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/764 (79%), Positives = 660/764 (86%), Gaps = 41/764 (5%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQ---------PDGE 51
           MPGI+MD  +EE +V+E+N NS P+KEN++SNKSP+ST  PQSP            P GE
Sbjct: 1   MPGIVMDGNNEEAIVNEMNDNSVPIKENAMSNKSPRSTLSPQSPCSNSVDLPAGGVPVGE 60

Query: 52  --------------------GVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSE 91
                               GVDTSIEQLYENVCDMQSSD SPSRHSFGSDGEESRIDSE
Sbjct: 61  LTVDEVVVNEVAADETSVHGGVDTSIEQLYENVCDMQSSDLSPSRHSFGSDGEESRIDSE 120

Query: 92  LRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISS 151
           LRHLVGGEMREVEIM+EEEV+KPE+D+HS SSSKKGSSSGSKKSGKL K+QSA + SISS
Sbjct: 121 LRHLVGGEMREVEIMQEEEVDKPENDTHSNSSSKKGSSSGSKKSGKLNKNQSASSNSISS 180

Query: 152 GHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDK----GVKKSNAGATPMKKRKG----- 202
             SKK SH  +DSE SSK + K KS PEKPPIDK      KK+N G    KK +      
Sbjct: 181 NTSKKDSHIILDSEASSKLSPKSKSPPEKPPIDKRNDKNFKKANGGVKSTKKWRNSPLGG 240

Query: 203 -KLHKG-QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKP 260
            KL  G +D S++GL  P LG  LLKQ+R+LISSGDNPQKALELALRA+KSFEI ANGKP
Sbjct: 241 KKLQNGVEDSSDSGLGNPDLGRFLLKQSRDLISSGDNPQKALELALRASKSFEICANGKP 300

Query: 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320
           SLELVM LHV+AAIYCS+GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM
Sbjct: 301 SLELVMSLHVVAAIYCSVGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 360

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
           LGQLENS  CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF +A++ CQMALDIH
Sbjct: 361 LGQLENSTKCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFDDAKRLCQMALDIH 420

Query: 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440
           ++NG+PAS EEAADRRLMGLICETKGDHEAALEHLVLASM M+AN Q+AEVASVDCSIGD
Sbjct: 421 RENGAPASPEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQEAEVASVDCSIGD 480

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500
           TYLSLSRYDEA FAYQKALTAFKT KGENHPAVA+VFVRLAD+YN+TGKLR+SKSYCENA
Sbjct: 481 TYLSLSRYDEAVFAYQKALTAFKTTKGENHPAVAAVFVRLADLYNKTGKLRDSKSYCENA 540

Query: 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560
           LRIYEKP PG+PPEEIASGLTDVS+IYESMNELEQAIKLLQKALKIYNDAPGQQST+AGI
Sbjct: 541 LRIYEKPAPGIPPEEIASGLTDVSAIYESMNELEQAIKLLQKALKIYNDAPGQQSTIAGI 600

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV 620
           EAQMGVMYYMLGNYS+SY++FKNA+SKLRA GERKSAFFG+ALNQMGLACVQRYSINEA 
Sbjct: 601 EAQMGVMYYMLGNYSESYNTFKNAVSKLRASGERKSAFFGIALNQMGLACVQRYSINEAA 660

Query: 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680
           ELFEEA+SILEQECGPYHPDTLGVYSNLAGTYDA+GRLDDAIEILE VVG+REEKLGTAN
Sbjct: 661 ELFEEAKSILEQECGPYHPDTLGVYSNLAGTYDAMGRLDDAIEILELVVGMREEKLGTAN 720

Query: 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNNDGI 723
           PDVDDEK+RLAELLKEAGRVRSRK +SLE LLD+NS  ++  GI
Sbjct: 721 PDVDDEKKRLAELLKEAGRVRSRKGRSLENLLDSNSHSIDKAGI 764

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491584|ref|XP_002279663.2| PREDICTED: uncharacterized protein LOC100255253 [Vitis vinifera]

 Score = 1125 bits (2911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/744 (78%), Positives = 645/744 (86%), Gaps = 27/744 (3%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGV------- 53
           MPG++M+ ++E+GV +ELNG+ST  KENS SNKSPKS    QSP   P   GV       
Sbjct: 1   MPGVVMEGVNEDGVANELNGSSTAFKENSASNKSPKSNLGLQSP---PRSAGVEFPMNGV 57

Query: 54  -DTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVE 112
            DTSIEQLY+NVC+MQSSDQSPSR SFGS+GEESRIDSELRHLVGGEMREVE + EEEVE
Sbjct: 58  IDTSIEQLYDNVCEMQSSDQSPSRVSFGSEGEESRIDSELRHLVGGEMREVE-IMEEEVE 116

Query: 113 KPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNS 172
           KP D+S S S SKK S S  K+ GK++KS+ + +KS+S  HSKK  +S ++SEVSSK+N 
Sbjct: 117 KPGDNSRSDSGSKKESLSAGKQFGKMDKSELS-SKSVSPVHSKK--NSQLESEVSSKSNP 173

Query: 173 KGKSLPEKPPIDK----GVKKSNAGATPMKKRKG------KLHKG-QDVSEAGLDKPGLG 221
           K +S   KPP DK     ++  NAG TP+KK++       KL  G  D SEAGLD P LG
Sbjct: 174 KSRSPQGKPPSDKRSEKNLRNPNAGVTPLKKQRNSPLGGVKLQNGTDDSSEAGLDNPNLG 233

Query: 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY 281
             LLKQAR+LISSGDNPQKALELALRA KS+E  ANGKPSLE VMCLHV AAIYC+LGQY
Sbjct: 234 RFLLKQARDLISSGDNPQKALELALRATKSYEKCANGKPSLEQVMCLHVTAAIYCNLGQY 293

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
           NEAIPVLE SIEIPVIEEGQ+HALAKFAGHMQLGDTYAM+GQLENS++CYTTGL VQKQV
Sbjct: 294 NEAIPVLEHSIEIPVIEEGQDHALAKFAGHMQLGDTYAMVGQLENSILCYTTGLGVQKQV 353

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           LG+TDPRVGETCRYLAEAHVQALQF EA+K CQMALDIH++NGSPASLEEAADRRLMGLI
Sbjct: 354 LGDTDPRVGETCRYLAEAHVQALQFDEAEKLCQMALDIHRENGSPASLEEAADRRLMGLI 413

Query: 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461
           CE KGDHEAALEHL+LASM M+AN Q+ EVASVDCSIGDTYLSLSRYDEA FAYQKALT 
Sbjct: 414 CEMKGDHEAALEHLILASMAMVANGQEIEVASVDCSIGDTYLSLSRYDEAIFAYQKALTV 473

Query: 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
           FKT KGENHP+VASVFVRLAD+YN+TGKLRESKSYCENALRIY KP+PG+PPEEIASGLT
Sbjct: 474 FKTTKGENHPSVASVFVRLADLYNKTGKLRESKSYCENALRIYGKPIPGIPPEEIASGLT 533

Query: 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581
           DVS+IYESM+ELEQA+ LLQKALKIYNDAPGQQST AGIEAQMGVMYYMLGNYSDSY+SF
Sbjct: 534 DVSAIYESMDELEQALSLLQKALKIYNDAPGQQSTTAGIEAQMGVMYYMLGNYSDSYNSF 593

Query: 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
           KNAISKLRA GE+KSAFFG+ALNQMGLACVQRY+INEA ELFEEAR ILEQE GPYHPDT
Sbjct: 594 KNAISKLRASGEKKSAFFGIALNQMGLACVQRYAINEAAELFEEARDILEQEYGPYHPDT 653

Query: 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701
           LGVYSNLAGTYDA+GRLDDAIEILE VVG+REEKLGTANPDVDDEKRRLAELLKEAG+VR
Sbjct: 654 LGVYSNLAGTYDAVGRLDDAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGKVR 713

Query: 702 SRKAQSLETLLDANSR-VNNDGIE 724
           +RKA+SLETLLD NS+ VNND I+
Sbjct: 714 NRKARSLETLLDVNSQTVNNDDIK 737

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477406|ref|XP_004155014.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208453 [Cucumis sativus]

 Score = 1084 bits (2803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/741 (73%), Positives = 618/741 (83%), Gaps = 21/741 (2%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSP----RDQPDGEGVDTS 56
           MPGI+MD+I+EE  V++ NG+S  ++E S  NKSP+S    QSP     D P    VDTS
Sbjct: 1   MPGIVMDEINEERAVNKHNGSSIHIEE-SYENKSPRSGLSLQSPGSVHVDFPVDGLVDTS 59

Query: 57  IEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPED 116
           IE+LYENVCDMQSSDQSPSR SFGSDGEESRIDSEL HLVGGEMREVEI++EEE +  E 
Sbjct: 60  IEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEE-DIAEK 118

Query: 117 DSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKS 176
             H         S  + K  K E SQ   +K  S    +K  H  +D E S K++ +GK 
Sbjct: 119 HEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSG---RKSPHLQLDHETSPKSSPRGKG 175

Query: 177 LPEKPPI----DKGVKKSNAGATPMKKRK------GKLHKG-QDVSEAGLDKPGLGPLLL 225
           L +KPPI    +K  KK + GA  +KK+K       K+  G +D  E+ LD P LGP LL
Sbjct: 176 LMDKPPISRKNEKNSKKXSPGAAQLKKQKDSPLRGSKMQNGSEDFEESMLDNPDLGPFLL 235

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQAR L+SSG+N QKAL +ALRAAK+FE+ ANGKP+LELVMCLHV AAIYCSLGQY+EAI
Sbjct: 236 KQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAI 295

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P+LE SIEIP IEEG EHALAKFAGHMQLGDTYAMLGQLENSL+CYTTGLEVQKQVLGET
Sbjct: 296 PLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGET 355

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           DPRVGET RYLAEAHVQAL+F EA+KFCQMALDIHK N  PASLEEA DRRLMGLICETK
Sbjct: 356 DPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETK 415

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GDHEAALEHLVLASM M+AN Q+ +VA+VDCSIGD+YLSLSRYDEA FAYQKALT FKT 
Sbjct: 416 GDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTT 475

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHPAV SVFVRLAD+YN+TGK+RES SYCENALRIYEKPVPG+PPEEIASGLTD+++
Sbjct: 476 KGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAA 535

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IYESMNE+EQA+KLL KALKIYNDAPGQQ+T+AGIEAQMGV+YYMLGNYS+SY+SF NAI
Sbjct: 536 IYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAI 595

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            KLR  GE+KSAFFG+ALNQMGL CVQ+Y+INEAVELFEEA+SILEQE GPYHPDTLGVY
Sbjct: 596 PKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVY 655

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           SNLAGTYDAIGRLDDAIEILE+VVG+REEKLGTANPDVDDEKRRL+ELLKEAGRVRSRKA
Sbjct: 656 SNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKA 715

Query: 706 QSLETLLDANSR-VNNDGIEL 725
           +SLETLLDAN+  VN+ GI++
Sbjct: 716 RSLETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440678|ref|XP_004138111.1| PREDICTED: uncharacterized protein LOC101208453 [Cucumis sativus]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/741 (73%), Positives = 618/741 (83%), Gaps = 21/741 (2%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSP----RDQPDGEGVDTS 56
           MPGI+MD+I+EE  V++ NG+S  ++E S  NKSP+S    QSP     D P    VDTS
Sbjct: 1   MPGIVMDEINEERAVNKHNGSSIHIEE-SYGNKSPRSGLSLQSPGSVHVDFPVDGLVDTS 59

Query: 57  IEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPED 116
           IE+LYENVCDMQSSDQSPSR SFGSDGEESRIDSEL HLVGGEMREVEI++EEE +  E 
Sbjct: 60  IEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEE-DIAEK 118

Query: 117 DSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKS 176
             H         S  + K  K E SQ   +K  S    +K  H  ++ E S K++ +GK 
Sbjct: 119 HEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSG---RKSPHLQLEHETSPKSSPRGKG 175

Query: 177 LPEKPPI----DKGVKKSNAGATPMKKRK------GKLHKG-QDVSEAGLDKPGLGPLLL 225
           L +KPPI    +K  KK++ GA  +KK+K       K+  G +D  E  LD P LGP LL
Sbjct: 176 LMDKPPISRKNEKNSKKNSPGAAQLKKQKDSPLRGSKMQNGSEDFEELMLDNPDLGPFLL 235

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQAR L+SSG+N QKAL +ALRAAK+FE+ ANGKP+LELVMCLHV AAIYCSLGQY+EAI
Sbjct: 236 KQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAI 295

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P+LE SIEIP IEEG EHALAKFAGHMQLGDTYAMLGQLENSL+CYTTGLEVQKQVLGET
Sbjct: 296 PLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGET 355

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           DPRVGET RYLAEAHVQAL+F EA+KFCQMALDIHK N  PASLEEA DRRLMGLICETK
Sbjct: 356 DPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETK 415

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GDHEAALEHLVLASM M+AN Q+ +VA+VDCSIGD+YLSLSRYDEA FAYQKALT FKT 
Sbjct: 416 GDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTT 475

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHPAV SVFVRLAD+YN+TGK+RES SYCENALRIYEKPVPG+PPEEIASGLTD+++
Sbjct: 476 KGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAA 535

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IYESMNE+EQA+KLL KALKIYNDAPGQQ+T+AGIEAQMGV+YYMLGNYS+SY+SF NAI
Sbjct: 536 IYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAI 595

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            KLR  GE+KSAFFG+ALNQMGL CVQ+Y+INEAVELFEEA+SILEQE GPYHPDTLGVY
Sbjct: 596 PKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVY 655

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           SNLAGTYDAIGRLDDAIEILE+VVG+REEKLGTANPDVDDEKRRL+ELLKEAGRVRSRKA
Sbjct: 656 SNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKA 715

Query: 706 QSLETLLDANSR-VNNDGIEL 725
           +SLETLLDAN+  VN+ GI++
Sbjct: 716 RSLETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507244|ref|XP_003522379.1| PREDICTED: uncharacterized protein LOC100791625 [Glycine max]

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/748 (70%), Positives = 612/748 (81%), Gaps = 30/748 (4%)

Query: 1   MPGIIMDDIHEEGVVSELNGNS-TPVKENSVSNKSPKSTPCPQSP-RDQPD------GEG 52
           MPGI+ + + +EG  +E+NG+  +P KE     KSP+      SP R Q D      G+G
Sbjct: 12  MPGIVTNGVQDEGGSNEMNGDQDSPFKEPLNLVKSPRGGSV--SPGRGQGDDGANFGGDG 69

Query: 53  V-DTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEE-- 109
           V + SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSELRHLVGG MREVEIMEEE  
Sbjct: 70  VVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVG 129

Query: 110 EVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSS- 168
           E ++PE  S S  SS  G  S  KK  ++++ Q     + SSG ++K S   ++S+V S 
Sbjct: 130 EGKEPEGSSSSEISSALGGLSHDKKLDQVDEIQEVQPAATSSGSTEK-SVKALNSQVESD 188

Query: 169 ----KTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK----GK---LHKGQDVSEA 213
               K  SKG+S   K PI     K ++K   G T +K  K    GK    ++ + ++E+
Sbjct: 189 NTLPKLTSKGRSPLSKAPIPRKNGKPLRKPIGGVTGVKNTKNSPIGKSVSQNRVESMAES 248

Query: 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA 273
            L+KP   P+LLKQAR+LISSGDNPQKAL+LAL+A + FE   NGKPSLELVMCLHV AA
Sbjct: 249 ALEKPERAPVLLKQARDLISSGDNPQKALDLALQAMELFEKFGNGKPSLELVMCLHVTAA 308

Query: 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333
           IYCSLGQY EAIP+LE+SIEIPVI E Q+HALAKFAGHMQLGDTYAMLGQLENS+MCYTT
Sbjct: 309 IYCSLGQYAEAIPILERSIEIPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTT 368

Query: 334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAA 393
           GLEVQKQ+LGETDPRVGETCRY+AEA+VQALQF EA++ CQMALDIHK N S  S+EEAA
Sbjct: 369 GLEVQKQILGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANNSAPSVEEAA 428

Query: 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF 453
           DRRLMGLICETKG+HE ALEHLVLASM M+ N Q+AEVASVDCSIGDTYLSLSRYDEA F
Sbjct: 429 DRRLMGLICETKGNHETALEHLVLASMAMVNNGQEAEVASVDCSIGDTYLSLSRYDEAAF 488

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
           AYQKALT FKT+KGENHPAV  VFVRLAD+YNRTGK+RESKSYCENAL+IYE P+PGVP 
Sbjct: 489 AYQKALTVFKTSKGENHPAVGLVFVRLADLYNRTGKIRESKSYCENALKIYENPMPGVPL 548

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
           EEIASGLT++S+IYESMNELEQA+KLLQKAL+IY+D PGQQST+AGIEAQMGVMYYMLGN
Sbjct: 549 EEIASGLTNISTIYESMNELEQALKLLQKALEIYSDTPGQQSTIAGIEAQMGVMYYMLGN 608

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
           YS+SY++ K+AISKLRAIGE+KS+FFG+ALNQMGLACVQRY+++EA ELFEEA+SILEQE
Sbjct: 609 YSESYNTLKDAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQE 668

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693
            GPYHP+TLGVYSNLAGTYDAIGRLDDAI+ILE+VV  REEKLGTANP+VDDEKRRL EL
Sbjct: 669 YGPYHPETLGVYSNLAGTYDAIGRLDDAIQILEYVVNTREEKLGTANPEVDDEKRRLGEL 728

Query: 694 LKEAGRVRSRKAQSLETLLDANSRVNND 721
           LKEAGRVRSRKA+SLE LLD N+   N+
Sbjct: 729 LKEAGRVRSRKARSLENLLDGNAHAANN 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518977|ref|XP_003528151.1| PREDICTED: uncharacterized protein LOC100783201 [Glycine max]

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/752 (69%), Positives = 602/752 (80%), Gaps = 35/752 (4%)

Query: 1   MPGIIMDDIH-EEGVVSELNGN-STPVKENSVSNKSPKS-TPCPQSPRDQPDG------- 50
           MPGI+ + +H +EG  ++LNG+  +  KE     KSP+  +  PQ  R Q D        
Sbjct: 1   MPGIVRNGVHHDEGGSNDLNGDHDSTSKEPLNLVKSPRGGSVSPQ--RGQGDDGANFGGD 58

Query: 51  EGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEE 110
           E V+ SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSELRHLVGG MREVEIMEEE 
Sbjct: 59  EVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEV 118

Query: 111 VEK---PEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKK-----VSHSGM 162
            E+   PE  S S  SS  G  S  KK  ++++ Q     + SSG S+K     +S  G 
Sbjct: 119 GEEKGLPEGSSSSEISSALGGLSNDKKLNQVDEIQEVQPAATSSGSSEKSIKASISMVGP 178

Query: 163 DSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGAT---------PMKKRKGKLHKGQD 209
           D+  S K+ SKGK    K PI     K ++K  +GAT         PM K   + ++ + 
Sbjct: 179 DN-TSPKSTSKGKIPLSKAPIPRNNGKPLRKQISGATTGVKTTKNSPMGKSVSR-NRAES 236

Query: 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269
            +E+ L+KP   P+LLKQAR+LISSGDNP KAL+LAL+A K FE   N KPSLELVMCLH
Sbjct: 237 TAESALEKPERAPVLLKQARDLISSGDNPHKALDLALQAMKLFEKFGNEKPSLELVMCLH 296

Query: 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           V AAIYCSLGQY EAIP+LE+SIE+PVI E Q+HALAKFAGHMQLGDTYAMLGQLENS M
Sbjct: 297 VTAAIYCSLGQYGEAIPILERSIEVPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSTM 356

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
           CYTTGLEVQKQ+LGETDPRVGETCRY+AEA+VQALQF EA++ CQMALDIH  N S  SL
Sbjct: 357 CYTTGLEVQKQILGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHIANNSAPSL 416

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           EEAADRRLMGLICETKG+HE ALEHLVLASM M++NDQ+AEVASVDCSIGDTYLSLSRYD
Sbjct: 417 EEAADRRLMGLICETKGNHETALEHLVLASMAMVSNDQEAEVASVDCSIGDTYLSLSRYD 476

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           EA FAYQKALT FKT+KGENHPAV  VFVRLAD+YNRTGK+RESKSYCE+AL+IYE P+P
Sbjct: 477 EAVFAYQKALTVFKTSKGENHPAVGLVFVRLADLYNRTGKIRESKSYCESALKIYENPMP 536

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
           G+PPEEIASGLT++S+IYESMNELE A+KLLQKAL+IYND PGQQST+AGIEAQMGVMYY
Sbjct: 537 GIPPEEIASGLTNISTIYESMNELEHALKLLQKALEIYNDTPGQQSTIAGIEAQMGVMYY 596

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           MLGNYS SY++ KNAISKLRAIGE+KS+FFG+ALNQMGLACVQ Y+++EA ELFEEA+SI
Sbjct: 597 MLGNYSKSYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQCYALSEATELFEEAKSI 656

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689
           LEQE GPYHP+TLGV SNLA TYDAIGRLDDAI+ILE+VV  REEKLGTANP+VDDEKRR
Sbjct: 657 LEQEYGPYHPETLGVSSNLAATYDAIGRLDDAIQILEYVVNTREEKLGTANPEVDDEKRR 716

Query: 690 LAELLKEAGRVRSRKAQSLETLLDANSRVNND 721
           L ELLKEAGRVRSRK +SLE LLD N+   N+
Sbjct: 717 LGELLKEAGRVRSRKTRSLENLLDGNAHAANN 748

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133522|ref|XP_002321593.1| predicted protein [Populus trichocarpa] gi|222868589|gb|EEF05720.1| predicted protein [Populus trichocarpa]

 Score =  981 bits (2535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/664 (77%), Positives = 562/664 (84%), Gaps = 44/664 (6%)

Query: 53  VDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVE 112
           VDTSIEQLYENVCDMQSSDQSPSRHSF SDGEESRIDSEL HLVGGEMREVEIMEEEEV+
Sbjct: 4   VDTSIEQLYENVCDMQSSDQSPSRHSFASDGEESRIDSELCHLVGGEMREVEIMEEEEVD 63

Query: 113 KPEDDSHSISSSKKGSSSG-SKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTN 171
           KPE D+ S SSSKKG      K++ K  K  + G + +                      
Sbjct: 64  KPEHDTRSNSSSKKGKKPPIDKRNDKNLKKGNVGNRLM---------------------- 101

Query: 172 SKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQAREL 231
              K   + PP   GVK  N                    E+GLD P LG  LLKQAR+L
Sbjct: 102 ---KKRRDSPP--GGVKLLNGTK----------------DESGLDNPDLGRFLLKQARDL 140

Query: 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291
           +SSGDNPQKALELALRA+KSFEI ANGK SLELVMCLHV AAI+CS+GQY EAIP+LE S
Sbjct: 141 VSSGDNPQKALELALRASKSFEICANGKSSLELVMCLHVTAAIHCSIGQYREAIPILEHS 200

Query: 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351
           IEIPV EEGQEHALAKFAG+MQLGDTYAMLGQ+ENS  CY+TGLEVQK+VLGETDPRVGE
Sbjct: 201 IEIPVPEEGQEHALAKFAGYMQLGDTYAMLGQVENSTNCYSTGLEVQKKVLGETDPRVGE 260

Query: 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411
           TCRYLAEAHVQALQF +AQ  CQMALDIH++NGSPASLEEAADRRLMGLICETKGDHEAA
Sbjct: 261 TCRYLAEAHVQALQFDDAQMVCQMALDIHRENGSPASLEEAADRRLMGLICETKGDHEAA 320

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
           LEHLVLASM M+AN Q++EVAS+DC IGD YLSLSRYDEA FAYQKALTAFKT KGENHP
Sbjct: 321 LEHLVLASMAMVANGQESEVASIDCGIGDAYLSLSRYDEAVFAYQKALTAFKTTKGENHP 380

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
           +VASVFVRLAD+YN+TGK+R+SKSYCENALRIYEKPVPG+PPEEIASGL+DVS+IYESMN
Sbjct: 381 SVASVFVRLADLYNKTGKMRDSKSYCENALRIYEKPVPGIPPEEIASGLSDVSAIYESMN 440

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           EL+QAIKLL KALKIYNDAPGQQST+AGIEAQMGVMYYM+GNYS+SY+SFKNAISKLRA 
Sbjct: 441 ELDQAIKLLGKALKIYNDAPGQQSTIAGIEAQMGVMYYMMGNYSESYNSFKNAISKLRAS 500

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
           GE+KSAFFG+ALNQMGL+CVQRY+INEA ELFEEA+ ILEQECGPYHPDTLGVYSNLAGT
Sbjct: 501 GEKKSAFFGIALNQMGLSCVQRYAINEAAELFEEAKIILEQECGPYHPDTLGVYSNLAGT 560

Query: 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
           YDA+GRLDDAIEILE+VV +REEKLGTANPDV DEK+RLAELLKEAGRVRSRKA+SLE L
Sbjct: 561 YDAMGRLDDAIEILEYVVEMREEKLGTANPDVVDEKKRLAELLKEAGRVRSRKARSLENL 620

Query: 712 LDAN 715
           LD N
Sbjct: 621 LDGN 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461993|ref|XP_003601278.1| Kinesin light chain [Medicago truncatula] gi|355490326|gb|AES71529.1| Kinesin light chain [Medicago truncatula]

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/764 (66%), Positives = 605/764 (79%), Gaps = 45/764 (5%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQ-----SPRDQPDGEGVDT 55
           MPGI+ + +H++G V+E+NGN +P K +    KSP+S+  PQ      P  Q DG  V+ 
Sbjct: 1   MPGIVTNGVHDDGEVNEMNGNRSPTKASLTPIKSPRSSMSPQRRQSVGPNFQDDGV-VEP 59

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEV---- 111
           SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSEL HLVGG MRE+EIMEEE      
Sbjct: 60  SIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVG 119

Query: 112 EKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKS----ISSGHSKKVS--------- 158
            +P + S   +SS  G+ S  KK   + + QS G+KS    I SG    V          
Sbjct: 120 RRPGESSSGETSSGMGNLSDDKKMDMVAEIQS-GSKSPVIEIQSGSKSPVVKTRSSSKSP 178

Query: 159 ----------HSGMDSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK--- 201
                     +S + S+ S ++  KGKS P K P+    D+ ++K   G   +K  K   
Sbjct: 179 VSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSP 238

Query: 202 -GK---LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257
            GK   + + ++ +E+ LDKP   P+LLKQAR+L+S+GDNP KALELAL+A K FE   N
Sbjct: 239 LGKSVSMSRVENSAESALDKPEQAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGN 298

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
           GKPSLELVMCLHV AAIYCSLG+Y+EAIP+LE+SIEIP I E Q+HALAKFAGHMQLGDT
Sbjct: 299 GKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDT 358

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
           YAMLGQLENS+M YT G EVQ+ +LGETDPRVGETCRYLAEA+VQALQF+EA++ CQMAL
Sbjct: 359 YAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEELCQMAL 418

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
           DIH++N S  S+EEAADRRLMGLICETKG+HEAALEHLVLASM M+AN Q+AEVASVDCS
Sbjct: 419 DIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCS 478

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           IGDTYLSLSRYDEA FAY+KAL  FKT+KGENHPAV SVFVRLAD+YNRTGK+RESKSYC
Sbjct: 479 IGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYC 538

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
           + AL+IYE P+PGV PEEIASGLT++SSIYESMNE++QA+KLLQKAL+IYNDAPGQQ T+
Sbjct: 539 DKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTI 598

Query: 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           AGIEAQ+GVMYYMLGNY++SY++ K AI+KLRAIGE+KS+FFG+ALNQ+GLACVQRY++ 
Sbjct: 599 AGIEAQVGVMYYMLGNYTESYNTLKKAIAKLRAIGEKKSSFFGIALNQLGLACVQRYALR 658

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           EA+ELFEEA+S+LE E GPYHP+TLGVYSNLAGTYDAIGRLDDAI  LE VV +REEKLG
Sbjct: 659 EAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLG 718

Query: 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND 721
           TANPDVDDEKRRL+ELLKEAG+VRSRK +SLE L D ++   N+
Sbjct: 719 TANPDVDDEKRRLSELLKEAGKVRSRKVRSLENLFDGDAHTLNN 762

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488843|ref|XP_002274441.2| PREDICTED: uncharacterized protein LOC100254332 [Vitis vinifera]

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/741 (67%), Positives = 581/741 (78%), Gaps = 48/741 (6%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQP-----DGEGVDT 55
           MPG++MD +H +G+      N TP  +   SN SP S   PQS          DG  ++T
Sbjct: 1   MPGLVMDGLHRDGM-----ANYTP--KEGFSN-SPVSALSPQSHESGSIDLVIDGV-INT 51

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPE 115
           SIEQLY NVC+MQSSDQSPSR SF S G ESRIDSEL HLVGG   + E+M+E  + K  
Sbjct: 52  SIEQLYHNVCEMQSSDQSPSRRSFISYGNESRIDSELYHLVGGLFGDAEVMKEVVMMK-- 109

Query: 116 DDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGK 175
                        + G    G L  +Q A  KS+ S   K+ SH  ++SE S K+N    
Sbjct: 110 -------------NKGEDNEGNL--TQFASEKSVPSLQWKRPSHLHLESEGSPKSNPN-- 152

Query: 176 SLPEKPPIDK----GVKKSNAGATPMKKRKG-----KLHKG-QDVSEAGLDKPGLGPLLL 225
              E+PPIDK     ++K N G  P++K+K      K H G +D+ EAGLD P LGP LL
Sbjct: 153 ---ERPPIDKRRERNLRKPN-GVIPIRKQKNFASGVKFHNGTEDLLEAGLDNPDLGPFLL 208

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQ R+LISSG+NPQKALELALRA KSFEI  NGKP+LELVMCLHVIAAIYCSLGQY+EAI
Sbjct: 209 KQTRDLISSGENPQKALELALRAVKSFEITGNGKPNLELVMCLHVIAAIYCSLGQYDEAI 268

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P LE+SIEIPVIEEGQ HALAKF G MQLGDTYAM+GQ+ENS++CYT GLE+Q+QVLGE 
Sbjct: 269 PSLERSIEIPVIEEGQNHALAKFVGCMQLGDTYAMIGQIENSILCYTAGLEIQRQVLGEM 328

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           D R GETCRYLAEAHVQALQF EA+K CQMAL+IHK NG+PASLEEAADRRLM LIC++K
Sbjct: 329 DSRFGETCRYLAEAHVQALQFDEAKKLCQMALNIHKKNGTPASLEEAADRRLMALICDSK 388

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GD+EAALEH VLA M M AN Q+ + AS+DCSIGDTYLSL+RYDEA F+YQKALT FK+ 
Sbjct: 389 GDYEAALEHYVLAGMAMAANGQEIDAASIDCSIGDTYLSLARYDEAVFSYQKALTVFKST 448

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHP VASVFVRLAD+YN+ GKLRESKSYCENALR+Y KP PG+P EEIASGL D+S+
Sbjct: 449 KGENHPTVASVFVRLADLYNKVGKLRESKSYCENALRLYGKPNPGIPSEEIASGLIDISA 508

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           I+ESMNELEQA+KLLQKALKIY +APGQQST+AGIEAQMGV+YYM+GNYS SY+SF  AI
Sbjct: 509 IFESMNELEQALKLLQKALKIYGNAPGQQSTIAGIEAQMGVIYYMMGNYSASYNSFSCAI 568

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
           SKLRA GE+KSAF G+ALNQMGLACVQRY+I EA ELFEEARSILE+E GP HPDTLG+Y
Sbjct: 569 SKLRASGEKKSAFLGIALNQMGLACVQRYAIGEAAELFEEARSILEKEYGPCHPDTLGIY 628

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           SNLAGTYDA+GRL+DAIEILE+VVG+REEKLGTANPDVDDEKRRL ELL EAGRVRSRK 
Sbjct: 629 SNLAGTYDAMGRLEDAIEILEYVVGVREEKLGTANPDVDDEKRRLTELLTEAGRVRSRKT 688

Query: 706 QSLETLLDANSRVN-NDGIEL 725
           +SL+T LD N +   ND I++
Sbjct: 689 RSLQTFLDTNPQTTINDAIKV 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461995|ref|XP_003601279.1| Kinesin light chain [Medicago truncatula] gi|355490327|gb|AES71530.1| Kinesin light chain [Medicago truncatula]

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/764 (66%), Positives = 605/764 (79%), Gaps = 45/764 (5%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQ-----SPRDQPDGEGVDT 55
           MPGI+ + +H++G V+E+NGN +P K +    KSP+S+  PQ      P  Q DG  V+ 
Sbjct: 29  MPGIVTNGVHDDGEVNEMNGNRSPTKASLTPIKSPRSSMSPQRRQSVGPNFQDDGV-VEP 87

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEV---- 111
           SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSEL HLVGG MRE+EIMEEE      
Sbjct: 88  SIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVG 147

Query: 112 EKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKS----ISSGHSKKVS--------- 158
            +P + S   +SS  G+ S  KK   + + QS G+KS    I SG    V          
Sbjct: 148 RRPGESSSGETSSGMGNLSDDKKMDMVAEIQS-GSKSPVIEIQSGSKSPVVKTRSSSKSP 206

Query: 159 ----------HSGMDSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK--- 201
                     +S + S+ S ++  KGKS P K P+    D+ ++K   G   +K  K   
Sbjct: 207 VSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSP 266

Query: 202 -GK---LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257
            GK   + + ++ +E+ LDKP   P+LLKQAR+L+S+GDNP KALELAL+A K FE   N
Sbjct: 267 LGKSVSMSRVENSAESALDKPEQAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGN 326

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
           GKPSLELVMCLHV AAIYCSLG+Y+EAIP+LE+SIEIP I E Q+HALAKFAGHMQLGDT
Sbjct: 327 GKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDT 386

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
           YAMLGQLENS+M YT G EVQ+ +LGETDPRVGETCRYLAEA+VQALQF+EA++ CQMAL
Sbjct: 387 YAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEELCQMAL 446

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
           DIH++N S  S+EEAADRRLMGLICETKG+HEAALEHLVLASM M+AN Q+AEVASVDCS
Sbjct: 447 DIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCS 506

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           IGDTYLSLSRYDEA FAY+KAL  FKT+KGENHPAV SVFVRLAD+YNRTGK+RESKSYC
Sbjct: 507 IGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYC 566

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
           + AL+IYE P+PGV PEEIASGLT++SSIYESMNE++QA+KLLQKAL+IYNDAPGQQ T+
Sbjct: 567 DKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTI 626

Query: 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           AGIEAQ+GVMYYMLGNY++SY++ K AI+KLRAIGE+KS+FFG+ALNQ+GLACVQRY++ 
Sbjct: 627 AGIEAQVGVMYYMLGNYTESYNTLKKAIAKLRAIGEKKSSFFGIALNQLGLACVQRYALR 686

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           EA+ELFEEA+S+LE E GPYHP+TLGVYSNLAGTYDAIGRLDDAI  LE VV +REEKLG
Sbjct: 687 EAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLG 746

Query: 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND 721
           TANPDVDDEKRRL+ELLKEAG+VRSRK +SLE L D ++   N+
Sbjct: 747 TANPDVDDEKRRLSELLKEAGKVRSRKVRSLENLFDGDAHTLNN 790

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	729
TAIR|locus:2015959	650	KLCR3 "AT1G27500" [Arabidopsis	0.753	0.844	0.680	5.2e-210
TAIR|locus:2086834	663	KLCR2 "kinesin light chain-rel	0.761	0.837	0.641	3.7e-207
TAIR|locus:2123411	609	KLCR1 "kinesin light chain-rel	0.670	0.802	0.654	6.5e-177
TAIR|locus:2042506	617	AT2G31240 "AT2G31240" [Arabido	0.636	0.752	0.276	1.9e-42
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.572	0.323	0.222	6.9e-20
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.352	0.687	0.254	1.5e-13
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.352	0.687	0.254	1.5e-13
ASPGD|ASPL0000046994	1262	AN9426 [Emericella nidulans (t	0.641	0.370	0.211	2.7e-13
ASPGD|ASPL0000061567	1185	AN1071 [Emericella nidulans (t	0.589	0.362	0.223	2.4e-12
ASPGD|ASPL0000010369	1488	tprA [Emericella nidulans (tax	0.600	0.294	0.221	2.5e-12

TAIR|locus:2015959 KLCR3 "AT1G27500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1897 (672.8 bits), Expect = 5.2e-210, Sum P(2) = 5.2e-210
 Identities = 382/561 (68%), Positives = 450/561 (80%)

Query:   165 EVSSKTNSKGKSL---P---EKPPIDKGVKKSNAGATPMKKRK-G--KLHKGQDVSEAXX 215
             E   K+NS    L   P   EK    K V KSN G   M+K+K G  KL  G +  E   
Sbjct:    84 EFDVKSNSSNLDLEVMPRDMEKQTGKKNVTKSNVGVGGMRKKKVGGTKLQNGNE--EPSS 141

Query:   216 XXXXXXXXXXXQARELISSGDNPQKALELALRAAKSFEIGA-NGKPSLELVMCLHVIAAI 274
                        QAR L+SSGD+  KALEL  RAAK FE  A NGKP LE +MCLHV AA+
Sbjct:   142 ENVELARFLLNQARNLVSSGDSTHKALELTHRAAKLFEASAENGKPCLEWIMCLHVTAAV 201

Query:   275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334
             +C L +YNEAIPVL++S+EIPV+EEG+EHALAKFAG MQLGDTYAM+GQLE+S+ CYT G
Sbjct:   202 HCKLKEYNEAIPVLQRSVEIPVVEEGEEHALAKFAGLMQLGDTYAMVGQLESSISCYTEG 261

Query:   335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394
             L +QK+VLGE DPRVGETCRYLAEA VQAL+F EAQ+ C+ AL IH+++G P S+ EAAD
Sbjct:   262 LNIQKKVLGENDPRVGETCRYLAEALVQALRFDEAQQVCETALSIHRESGLPGSIAEAAD 321

Query:   395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             RRLMGLICETKGDHE ALEHLVLASM M AN Q++EVA VD SIGD+YLSLSR+DEA  A
Sbjct:   322 RRLMGLICETKGDHENALEHLVLASMAMAANGQESEVAFVDTSIGDSYLSLSRFDEAICA 381

Query:   455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
             YQK+LTA KT KGENHPAV SV++RLAD+YNRTGK+RE+KSYCENALRIYE     + PE
Sbjct:   382 YQKSLTALKTAKGENHPAVGSVYIRLADLYNRTGKVREAKSYCENALRIYESHNLEISPE 441

Query:   515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
             EIASGLTD+S I ESMNE+EQAI LLQKALKIY D+PGQ+  +AGIEAQMGV+YYM+G Y
Sbjct:   442 EIASGLTDISVICESMNEVEQAITLLQKALKIYADSPGQKIMIAGIEAQMGVLYYMMGKY 501

Query:   575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
              +SY++FK+AISKLRA G+++S FFG+ALNQMGLAC+Q  +I EAVELFEEA+ ILEQEC
Sbjct:   502 MESYNTFKSAISKLRATGKKQSTFFGIALNQMGLACIQLDAIEEAVELFEEAKCILEQEC 561

Query:   635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694
             GPYHP+TLG+YSNLAG YDAIGRLDDAI++L  VVG+REEKLGTANP  +DEKRRLA+LL
Sbjct:   562 GPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEKLGTANPVTEDEKRRLAQLL 621

Query:   695 KEAGRVRSRKAQSLETLLDAN 715
             KEAG V  RKA+SL+TL+D++
Sbjct:   622 KEAGNVTGRKAKSLKTLIDSD 642

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2086834 KLCR2 "kinesin light chain-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1850 (656.3 bits), Expect = 3.7e-207, Sum P(2) = 3.7e-207
 Identities = 362/564 (64%), Positives = 449/564 (79%)

Query:   165 EVSSKTNSKGKSLPEKPPIDKGVK--KSNAGATPMKKRKGKLHKGQDVSEAXXXXXX--X 220
             E   ++N +G SL +K P+  G K  K++     M   +    K  D+ +          
Sbjct:    95 EKKEESNGEG-SLSQKKPLSNGKKVAKTSPNNPKMPGSRISSRKSPDLGKVSVDEESPEL 153

Query:   221 XXXXXXQARELISSGDNPQKALELALRAAKSFEIGANGKPSL--ELVMCLHVIAAIYCSL 278
                   QAREL+SSG+N  KAL+LALRA K FE    G+  L   LVM LH++AAIY  L
Sbjct:   154 GVVLLKQARELVSSGENLNKALDLALRAVKVFEKCGEGEKQLGLNLVMSLHILAAIYAGL 213

Query:   279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338
             G+YN+A+PVLE+SIEIP+IE+G++HALAKFAG MQLGD Y ++GQ+ENS+M YT GLE+Q
Sbjct:   214 GRYNDAVPVLERSIEIPMIEDGEDHALAKFAGCMQLGDMYGLMGQVENSIMLYTAGLEIQ 273

Query:   339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA--SLEEAADRR 396
             +QVLGE+D RVGETCRYLAEAHVQA+QF EA + CQMALDIHK+NG+ A  S+EEAADR+
Sbjct:   274 RQVLGESDARVGETCRYLAEAHVQAMQFEEASRLCQMALDIHKENGAAATASIEEAADRK 333

Query:   397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
             LMGLIC+ KGD+E ALEH VLASM M + +   +VA+VDCSIGD Y+SL+R+DEA FAYQ
Sbjct:   334 LMGLICDAKGDYEVALEHYVLASMAMSSQNHREDVAAVDCSIGDAYMSLARFDEAIFAYQ 393

Query:   457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             KAL  FK  KGE H +VA V+VRLAD+YN+ GK R+SKSYCENAL+IY KP PG P EE+
Sbjct:   394 KALAVFKQGKGETHSSVALVYVRLADLYNKIGKTRDSKSYCENALKIYLKPTPGTPMEEV 453

Query:   517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
             A+G  ++S+IY+SMNEL+QA+KLL++ALKIY +APGQQ+T+AGIEAQMGV+ YM+GNYS+
Sbjct:   454 ATGFIEISAIYQSMNELDQALKLLRRALKIYANAPGQQNTIAGIEAQMGVVTYMMGNYSE 513

Query:   577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
             SYD FK+AISK R  GE+K+A FG+ALNQMGLACVQRY+INEA +LFEEA++ILE+ECGP
Sbjct:   514 SYDIFKSAISKFRNSGEKKTALFGIALNQMGLACVQRYAINEAADLFEEAKTILEKECGP 573

Query:   637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
             YHPDTL VYSNLAGTYDA+GRLDDAIEILE+VVG REEKLGTANP+V+DEK+RLA LLKE
Sbjct:   574 YHPDTLAVYSNLAGTYDAMGRLDDAIEILEYVVGTREEKLGTANPEVEDEKQRLAALLKE 633

Query:   697 AGRVRSRKAQSLETLLDANSRVNN 720
             AGR RS++ ++L TLLD N  + N
Sbjct:   634 AGRGRSKRNRALLTLLDNNPEIAN 657

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2123411 KLCR1 "kinesin light chain-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1698 (602.8 bits), Expect = 6.5e-177, Sum P(2) = 6.5e-177
 Identities = 328/501 (65%), Positives = 414/501 (82%)

Query:   228 ARELISSGDNPQKALELALRAAKSFEI-----------GANGKPSLELVMCLHVIAAIYC 276
             AR+ I+SG+ P KAL+ A+RA KSFE            G++G P L+L M LHV+AAIYC
Sbjct:    92 ARDAIASGEGPNKALDYAIRATKSFERCCAAVAPPIPGGSDGGPVLDLAMSLHVLAAIYC 151

Query:   277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
             SLG+++EA+P LE++I++P    G +H+LA F+GHMQLGDT +MLGQ++ S+ CY  GL+
Sbjct:   152 SLGRFDEAVPPLERAIQVPDPTRGPDHSLAAFSGHMQLGDTLSMLGQIDRSIACYEEGLK 211

Query:   337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
             +Q Q LG+TDPRVGETCRYLAEA+VQA+QF++A++ C+  L+IH+ +  PASLEEAADRR
Sbjct:   212 IQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAADRR 271

Query:   397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
             LM +ICE KGD+E ALEHLVLASM MIA+ Q++EVAS+D SIG+ Y+SL R+DEA F+YQ
Sbjct:   272 LMAIICEAKGDYENALEHLVLASMAMIASGQESEVASIDVSIGNIYMSLCRFDEAVFSYQ 331

Query:   457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             KALT FK +KGE HP VASVFVRLA++Y+RTGKLRESKSYCENALRIY KPVPG   EEI
Sbjct:   332 KALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPVPGTTVEEI 391

Query:   517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
             A GLT++S+IYES++E E+A+KLLQK++K+  D PGQQS +AG+EA+MGVMYY +G Y D
Sbjct:   392 AGGLTEISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSAIAGLEARMGVMYYTVGRYED 451

Query:   577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
             + ++F++A++KLRA GE KSAFFGV LNQMGLACVQ + I+EA ELFEEAR ILEQE GP
Sbjct:   452 ARNAFESAVTKLRAAGE-KSAFFGVVLNQMGLACVQLFKIDEAGELFEEARGILEQERGP 510

Query:   637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
                DTLGVYSNLA TYDA+GR++DAIEILE V+ +REEKLGTANPD +DEK+RLAELLKE
Sbjct:   511 CDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKLGTANPDFEDEKKRLAELLKE 570

Query:   697 AGRVRSRKAQSLETLLDANSR 717
             AGR R+ KA+SL+ L+D N+R
Sbjct:   571 AGRSRNYKAKSLQNLIDPNAR 591

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2042506 AT2G31240 "AT2G31240" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 132/477 (27%), Positives = 226/477 (47%)

Query:   235 GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
             G++P+K L  A +A KSF+ G   KP+L + M   ++ +    L ++++++  L ++  I
Sbjct:   132 GEDPEKVLSYADKALKSFD-GDGNKPNLLVAMASQLMGSANYGLKRFSDSLGYLNRANRI 190

Query:   295 PVIEEGQEHALAK------FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348
              V  E     + +       A  ++L +    +G+ E ++      LE+++    E    
Sbjct:   191 LVKLEADGDCVVEDVRPVLHAVQLELANVKNAMGRREEAIENLKKSLEIKEMTFDEDSKE 250

Query:   349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH 408
             +G   R LA+A+V  L F+EA  +   AL+IHK      S E A DRRL+G+I      H
Sbjct:   251 MGVANRSLADAYVAVLNFNEALPYALKALEIHKKELGNNSAEVAQDRRLLGVIYSGLEQH 310

Query:   409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468
             + ALE   L+   +       E+   +    +  ++L +Y+EA     K++   +T+K  
Sbjct:   311 DKALEQNRLSQRVLKNWGMKLELIRAEIDAANMKVALGKYEEA-IDILKSVVQ-QTDKDS 368

Query:   469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528
                A+  VF+ ++       K  ESK   E A  I EK    +P E +A   ++V+  YE
Sbjct:   369 EMRAM--VFISMSKALVNQQKFAESKRCLEFACEILEKKETALPVE-VAEAYSEVAMQYE 425

Query:   529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
             SMNE E AI LLQK L I    P +Q +   + A++G +    G  S +    ++A  +L
Sbjct:   426 SMNEFETAISLLQKTLGILEKLPQEQHSEGSVSARIGWLLLFSGRVSQAVPYLESAAERL 485

Query:   589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648
             +     K    G   N +G A ++      A ++F  A+ I++   GP H D++    NL
Sbjct:   486 KESFGAKHFGVGYVYNNLGAAYLELGRPQSAAQMFAVAKDIMDVSLGPNHVDSIDACQNL 545

Query:   649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL-LKEAGRVRSRK 704
             +  Y  +G    A+E  + V+   +    +A  ++ + KR L +L LK  G V + K
Sbjct:   546 SKAYAGMGNYSLAVEFQQRVINAWDNHGDSAKDEMKEAKRLLEDLRLKARGGVSTNK 602

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 273 (101.2 bits), Expect = 6.9e-20, P = 6.9e-20
 Identities = 97/436 (22%), Positives = 200/436 (45%)

Query:   239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
             +K  + AL A K   +G +   +L+ V  L ++   Y   G+  EA  + ++++      
Sbjct:   815 EKMYQRAL-AGKEKALGPDHTSTLDTVNNLGIL---YSDQGKLKEAEEMYQRALAGYEKA 870

Query:   299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358
              G +H       +  LG+ Y+  G+L+ +   Y   L+  ++ LG       +T   L  
Sbjct:   871 LGPDHTSTLVTVN-NLGNLYSDQGKLKEAEKMYQQALKGYEKALGPDHTSTLDTVNNLGS 929

Query:   359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHL 415
              +    +  EA++  Q AL   +    P           +G++ + +G   + E   +  
Sbjct:   930 LYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLDTVNNLGILYKNQGKLKEAEEMYQRA 989

Query:   416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
             +      +  D  + + +V+ ++G  Y    +  EA   YQ+AL  ++   G +H +   
Sbjct:   990 LAGKEKALGPDHTSTLMTVN-NLGSLYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLI 1048

Query:   476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT--DVSSIYESMNEL 533
                 L ++Y+  GKL+E++   + AL  YEK + G  P+  ++ +T  ++ ++Y    +L
Sbjct:  1049 TVNNLGNLYSDQGKLKEAEKMYQQALAGYEKAL-G--PDHTSTLVTVNNLGNLYSDQGKL 1105

Query:   534 EQAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL-RA 590
             ++A K+ Q+AL  Y  A  P   ST+  +   +G++Y   G   ++   ++ A++   +A
Sbjct:  1106 KEAEKMYQQALAGYEKAVGPDHTSTLDTVN-NLGILYSDQGKLKEAEKMYQQALAGYEKA 1164

Query:   591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
             +    ++   + +N +G     +  + EA E++++A +  E+  GP H  TL   +NL  
Sbjct:  1165 LSPDHTSTL-MTVNNLGSLYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLMTVNNLGI 1223

Query:   651 TYDAIGRLDDAIEILE 666
              Y   G+L +A E+ +
Sbjct:  1224 LYSDQGKLKEAEEMFQ 1239

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 68/267 (25%), Positives = 118/267 (44%)

Query:   438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
             +   YL+ +R+ EA   Y++ L +F    G NHP  A+    LA++   T +  E++S  
Sbjct:    71 VAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAESLY 130

Query:   498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-T 556
               AL I ++   G+   +    L +++ +       E A  L ++A+ I     G++   
Sbjct:   131 RQALEI-DREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHYR 189

Query:   557 VAGIEAQM-GVMYYMLGNYSDSYDSFKNAIS-KLRAIGERKSAFFGVALNQMG--LACVQ 612
              A  +  + G++  ML  + ++    + A+    + +GE  S +    LN +   L   +
Sbjct:   190 YATAQNNLAGLLQDML-RFEEAEALCRQALEITSKTLGESHSVY-ATRLNNLAELLGTTE 247

Query:   613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672
             RY   EA  L+ +A  I ++  G  HPD     +NLA    A GR ++A  +    + I 
Sbjct:   248 RYG--EAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEIT 305

Query:   673 EEKLGTANPDVDDEKRRLAELLKEAGR 699
                LG A+PD        A LL    R
Sbjct:   306 HRTLGEAHPDYATRLNNFAGLLDSTER 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 68/267 (25%), Positives = 118/267 (44%)

Query:   438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
             +   YL+ +R+ EA   Y++ L +F    G NHP  A+    LA++   T +  E++S  
Sbjct:    71 VAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAESLY 130

Query:   498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-T 556
               AL I ++   G+   +    L +++ +       E A  L ++A+ I     G++   
Sbjct:   131 RQALEI-DREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHYR 189

Query:   557 VAGIEAQM-GVMYYMLGNYSDSYDSFKNAIS-KLRAIGERKSAFFGVALNQMG--LACVQ 612
              A  +  + G++  ML  + ++    + A+    + +GE  S +    LN +   L   +
Sbjct:   190 YATAQNNLAGLLQDML-RFEEAEALCRQALEITSKTLGESHSVY-ATRLNNLAELLGTTE 247

Query:   613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672
             RY   EA  L+ +A  I ++  G  HPD     +NLA    A GR ++A  +    + I 
Sbjct:   248 RYG--EAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEIT 305

Query:   673 EEKLGTANPDVDDEKRRLAELLKEAGR 699
                LG A+PD        A LL    R
Sbjct:   306 HRTLGEAHPDYATRLNNFAGLLDSTER 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000046994 AN9426 [Emericella nidulans (taxid:162425)]

 Score = 212 (79.7 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 103/488 (21%), Positives = 203/488 (41%)

Query:   237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             N  + L+  +  A+   +G     +L  V   H +A+ Y + G+++EA  + EQ I+   
Sbjct:   759 NEAEKLQAQVIEARKKVLGPEHPSTLTSV---HNLASTYRNQGRWSEAEELQEQVIKTWK 815

Query:   297 IEEGQEHALAKFA-GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355
                G +H     + G++ L   Y   G+ + +       +E +KQVLG   P    +   
Sbjct:   816 QVLGLKHPFTLTSMGNLAL--IYWNRGRWKEAEELLAQVMENRKQVLGLVHPDTLASVHN 873

Query:   356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAAL 412
             LA  ++   ++ EA++     ++  K        +       +      +G   + E  L
Sbjct:   874 LAATYLDRGRWKEAEELFVQLVETRKQVVGLEHPDTLTSMHNLASTYRNQGRWKEAEELL 933

Query:   413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472
              H++ A   ++ ++  + + S+  ++   +    R+ EA     + +   K   G  HP 
Sbjct:   934 THILEAWKRVMGSEHPSTLTSMH-NLASIFWCQGRWKEAEELLTEVIETRKRVLGPEHPD 992

Query:   473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532
               S    LA  Y   G  +E++      +    K V G       + + +++S Y++   
Sbjct:   993 TLSSLHNLASRYLDIGHWKEAEGLLAQVMET-RKQVLGPAHPSTLTCMHNLASAYQNQGR 1051

Query:   533 LEQAIKLLQKALKIYNDAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK-LR 589
             LE+A +L  + ++ +    G +  ST+  ++  +   Y   G ++++ +     +    +
Sbjct:  1052 LEEAEELQVRVMEAWKQVVGSKHPSTLTSMD-NLATTYRKQGRWNEAEELQVQVMETWTQ 1110

Query:   590 AIG-ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648
              +G E       +A N   L   Q    N+A +L  +     +Q  GP HP TL    NL
Sbjct:  1111 VLGPEHPDTLISMA-NLASLYYNQG-QWNKAEKLQVQVMETRKQVLGPEHPHTLTSMLNL 1168

Query:   649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708
             A T+  +G   DA+ +++   G+  + LG+ +P        L E   EA ++   K Q  
Sbjct:  1169 AFTFKNLGNNLDALRLIKGYAGLCNKVLGSNHPQAILSLSTLNEWESEAEQLT--KGQKQ 1226

Query:   709 ETLLDANS 716
             +TL D +S
Sbjct:  1227 QTLADTSS 1234

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

ASPGD|ASPL0000061567 AN1071 [Emericella nidulans (taxid:162425)]

 Score = 203 (76.5 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 101/452 (22%), Positives = 179/452 (39%)

Query:   271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
             IA    S G+Y EA  +  + +E      G E   A       L  TY   G+L  +   
Sbjct:   727 IANCLLSDGRYLEAEVLYVKLLEFQK-RNGPEDP-ATLRSMANLASTYWSQGRLNEAEKL 784

Query:   331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                 +E  K VLG   P    +   LA  +    +++EA+K   + + + + + +    E
Sbjct:   785 EVQVMETSKIVLGAEHPDTLTSMANLASTYRNQGRWNEAEK---LEVQVMESSKTVLGAE 841

Query:   391 EAADRRLMGLICET---KGD-HEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444
                    M  I  T   +G  HEA     H++     ++  +  A + S+  ++  TY +
Sbjct:   842 HPDTLSSMSNIASTLWNQGRFHEAEKLFIHVMETRKIVLGVEHPATLTSM-ANLASTYQN 900

Query:   445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
               R++EA     + +   K   G  HP+  S    LA  Y   G+  E++      + I 
Sbjct:   901 QGRWNEAEKLEIQVMETSKITLGVKHPSTLSSMANLASTYRSQGRWNEAEKLFLQVMEI- 959

Query:   505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ--STVAGIEA 562
                V G       S + +++S Y +     +A KL  + +       G +  ST++ + A
Sbjct:   960 RNIVLGAKHPSTLSSMANLASTYRNQGRWNEAEKLEVQVIDTAKTVLGAEHPSTLSSM-A 1018

Query:   563 QMGVMYYMLGNYSDSYDSFKNAISKLRAI--GERKSAFFGVALNQMGLACVQ-RYSINEA 619
              +   Y   G ++++       I+  + +   E  +    +A N       Q R+  NEA
Sbjct:  1019 NLASTYRNQGRWNEAERLEVQVINTAKTVLGAEHPNTLSSMA-NLASTYWSQGRW--NEA 1075

Query:   620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679
              +L  +     +   G  HP+TL   ++LA TY   GR + A ++   V   R+  LG  
Sbjct:  1076 EKLEVQVIEAFKTVLGSKHPNTLRSIAHLASTYQKQGRWNKAEKLFMHVTETRKIMLGVE 1135

Query:   680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
             +PD       LA   +  GR    +  S++ +
Sbjct:  1136 HPDTLSSMANLASTYRNQGRWDKAEKLSMQVM 1167

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ASPGD|ASPL0000010369 tprA [Emericella nidulans (taxid:162425)]

 Score = 204 (76.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 101/456 (22%), Positives = 187/456 (41%)

Query:   271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
             +A+ Y S G++ EA  +  Q +E      G  H          L  TY   G+ + +   
Sbjct:    22 LASTYQSQGRWREAEWLEVQVMETRKQVLGSWHP-DTLTSMANLASTYWNQGRWKEAEAL 80

Query:   331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                 +E +KQVLG   P    +   LA  +    ++ EA+      ++  +    P    
Sbjct:    81 EVQVMETRKQVLGSWHPDTLTSKANLALTYQYQGRWKEAEWLEVQVMETRQQVLGPEHPN 140

Query:   391 EAADRRLMGLICETKGDHEAALEHL---VL-ASMTMIANDQDAEVASVDCSIGDTYLSLS 446
                    + L    +G  + A E L   V+  S  ++ +D D  +AS+  ++  TY S  
Sbjct:   141 TLTSMANLALTYRNQGQLKEA-ERLGVQVMETSKQVLGSDHDDTLASM-ANLASTYWSQG 198

Query:   447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
             ++ EA   + + L   K   G  HP   +    LA  Y   G+ +E++     A+ I   
Sbjct:   199 KWKEAEALFIRVLNTQKQVLGLEHPDTLASMADLASTYQNQGQWKEAEELFIQAMEIQTT 258

Query:   507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA--PGQQSTVAGIEAQM 564
              +    P+ + S   +++S Y S   L+QA +L  + ++       P    T+  + A +
Sbjct:   259 VLGSEHPDTLIS-TANLASTYRSQGRLKQAERLGVQVMETSKQVLGPDHPYTLTSM-ANL 316

Query:   565 GVMYYMLGNYSDSYDSFKNAIS-KLRAIG-ERKSAFFGVALNQMGLACVQRYSINEAVEL 622
                Y+  G + ++   F   ++ + + +G E       +A   +      +     A +L
Sbjct:   317 ASTYWSQGKWKEAEALFIRVLNTQKQVLGLEHPDTLASMA--DLASTYQNQGQWKTAEQL 374

Query:   623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
             F +     +   GP H +TL   +NLA      G+   A E+   VV  R++ LG  +P 
Sbjct:   375 FIQVMESQKLVLGPEHTNTLTTMANLASVLLRQGQWRQAEELHLRVVETRKKGLGEVDPP 434

Query:   683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRV 718
               +    LA + K  GR+   +A+ LE  ++ ++R+
Sbjct:   435 TLNSMVDLASIYKHQGRLA--EAKELERQIE-DARI 467

GO:0008150 "biological_process" evidence=ND

GO:0005871 "kinesin complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	729
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-10
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	5e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 17/111 (15%)

Query: 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495
            ++G+ Y  L  YDEA   Y+KAL     N        A  +  LA  Y + GK  E+  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDN--------ADAYYNLAAAYYKLGKYEEALE 55

Query: 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
             E AL +             A    ++   Y  + + E+A++  +KAL++
Sbjct: 56  DYEKALELDPDN---------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           ++A+   ++      L  YDEA    +KAL   +   GE+HP  A     LA +Y   G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGD 61

Query: 490 LRESKSYCENALRIYEK 506
             E+  Y E AL + E 
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529
           HP +A+    LA +  R G   E+    E AL +  + +    P E A  L +++ +Y +
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHP-ETARALNNLARLYLA 58

Query: 530 MNELEQAIKLLQKALKIY 547
           + + ++A++ L+KAL + 
Sbjct: 59  LGDYDEALEYLEKALALR 76

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661
           ALN + L   +    +EA+EL E+A  +   E G  HP+T    +NLA  Y A+G  D+A
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 662 IEILEFVVGIREE 674
           +E LE  + +RE 
Sbjct: 66  LEYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.9 bits (130), Expect = 6e-08
 Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 40/314 (12%)

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
              L LA +        AE  ++  +       L    EA    ++AL      +   + 
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEAL------ELLPNS 56

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
            +A + + LA    + G+L E+    E AL +   P        +A  L ++  + E++ 
Sbjct: 57  DLAGLLLLLALALLKLGRLEEALELLEKALELELLP-------NLAEALLNLGLLLEALG 109

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           + E+A++LL+KAL +  D    ++ +A          Y LG+Y ++ + ++ A+      
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALG------ALYELGDYEEALELYEKALELDPE- 162

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
                      LN++  A +   ++ EA+  +EEA  +LE+       D      NL   
Sbjct: 163 -----------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211

Query: 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
           Y  +G+ ++A+E          EK    +PD  +    LA LL E GR        LE  
Sbjct: 212 YLKLGKYEEALEYY--------EKALELDPDNAEALYNLALLLLELGRYEEALEA-LEKA 262

Query: 712 LDANSRVNNDGIEL 725
           L+ +  + N G+ L
Sbjct: 263 LELDPDLYNLGLAL 276

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
            LG+ Y  LG  + +L  Y   LE+        DP   +    LA A+ +  ++ EA + 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418
            + AL++  DN              +GL     G +E ALE    A
Sbjct: 57  YEKALELDPDNAKA--------YYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.0 bits (120), Expect = 1e-06
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 25/246 (10%)

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
                 + AL   +  +  +    + K          A     +GL+ E  G +E ALE 
Sbjct: 58  LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L       +A D D ++A    ++G     L  Y+EA   Y+KAL              A
Sbjct: 118 L----EKALALDPDPDLAEALLALG-ALYELGDYEEALELYEKALELDPELNEL-----A 167

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
              + L  +    G+  E+    E AL++                  D +    ++  L 
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKLNPD---------------DDAEALLNLGLLY 212

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
             +   ++AL+ Y  A       A     + ++   LG Y ++ ++ + A+     +   
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNL 272

Query: 595 KSAFFG 600
             A   
Sbjct: 273 GLALLL 278

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML 321
            +L   L+ +A +   LG Y+EA+ +LE+++E+    E  E           L   Y  L
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALEL--ARELGEDHPETARALNNLARLYLAL 59

Query: 322 GQLENSLMCYTTGLEVQKQ 340
           G  + +L      L +++ 
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 15/107 (14%)

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           +Y  + + ++A++  +KAL++  D     +  A     +   YY LG Y ++ + ++ A+
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPD-----NADA--YYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
                           A   +GLA  +     EA+E +E+A  +   
Sbjct: 62  ELDPD--------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.9 bits (117), Expect = 9e-06
 Identities = 74/401 (18%), Positives = 140/401 (34%), Gaps = 76/401 (18%)

Query: 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334
             +L QY      L++++ I  + E  + A       + LG      G L  ++  +   
Sbjct: 570 ALALAQYYLGKGQLKKALAI--LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

Query: 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394
           L +Q        P        LA+A+     +++A    + AL++  DN         A 
Sbjct: 628 LALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN-------TEAQ 672

Query: 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             L  L+   K   E+A +   +A      + + A    +    GD YL    Y  A  A
Sbjct: 673 IGLAQLLLAAK-RTESAKK---IAKSLQKQHPKAALGFEL---EGDLYLRQKDYPAAIQA 725

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           Y+KAL    +         +   ++L      +G   E+    E  L+ +          
Sbjct: 726 YRKALKRAPS---------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL---- 772

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
                 T ++ +Y +  + ++AIK  Q  +K   D     + +A +  +           
Sbjct: 773 -----RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE----------- 816

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVA-----LNQMGLACVQRYSINEAVELFEEARSI 629
               D         RA+   + A          L+ +G   V++   + A+ L  +A +I
Sbjct: 817 --LKDP--------RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670
                    P+   +  +LA    A GR  +A + L+ ++ 
Sbjct: 867 A--------PEAAAIRYHLALALLATGRKAEARKELDKLLN 899

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
            +G +YY LG+Y ++ + ++ A+                A   +  A  +     EA+E 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           +E+A   LE +     PD    Y NL   Y  +G+ ++A+E  E
Sbjct: 57  YEKA---LELD-----PDNAKAYYNLGLAYYKLGKYEEALEAYE 92

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)

Query: 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282
            LL         G +  +ALE   +A +      +   +       + +AA Y  LG+Y 
Sbjct: 2   ALLNLGNLYYKLG-DYDEALEYYEKALE-----LDPDNAD----AYYNLAAAYYKLGKYE 51

Query: 283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340
           EA+   E+++E+                +  LG  Y  LG+ E +L  Y   LE+   
Sbjct: 52  EALEDYEKALEL---------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +G +    GD++ ALE+   A       + D + A    ++   Y  L +Y+EA   Y+K
Sbjct: 6   LGNLYYKLGDYDEALEYYEKAL------ELDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
           AL        E  P  A  +  L   Y + GK  E+    E AL +   
Sbjct: 60  AL--------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
              L      LG  + +L      LE+ ++ LGE  P        LA  ++    + EA 
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 371 KFCQMALDIHKD 382
           ++ + AL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.8 bits (109), Expect = 2e-05
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 26/217 (11%)

Query: 247 RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306
            A +  E     +    L   L  +  +  +LG+Y EA+ +LE+++ +    +  E  LA
Sbjct: 77  EALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLA 136

Query: 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF 366
             A           LG  E +L  Y   LE     L      + E    L        ++
Sbjct: 137 LGA--------LYELGDYEEALELYEKALE-----LDPELNELAEALLALGALLEALGRY 183

Query: 367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426
            EA +  + AL ++ D+ + A L        +GL+    G +E ALE+         A +
Sbjct: 184 EEALELLEKALKLNPDDDAEALLN-------LGLLYLKLGKYEEALEYY------EKALE 230

Query: 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
            D + A    ++    L L RY+EA  A +KAL    
Sbjct: 231 LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616
           +A     + ++   LG+Y ++ +  + A+   R +GE        ALN +    +     
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGED-HPETARALNNLARLYLALGDY 62

Query: 617 NEAVELFEEARSILEQ 632
           +EA+E  E+A ++ E 
Sbjct: 63  DEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 15/78 (19%), Positives = 41/78 (52%)

Query: 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572
             ++A+ L +++ +   + + ++A++LL+KAL++  +        A     +  +Y  LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 573 NYSDSYDSFKNAISKLRA 590
           +Y ++ +  + A++   A
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           +  +Y  LG Y+EA+   E+++E+       ++A A    +  L   Y  LG+ E +L  
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALEL-----DPDNADA----YYNLAAAYYKLGKYEEALED 56

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382
           Y   LE+        DP   +    L  A+ +  ++ EA +  + AL++  +
Sbjct: 57  YEKALEL--------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539
           L ++Y + G   E+  Y E AL +             A    ++++ Y  + + E+A++ 
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDN---------ADAYYNLAAAYYKLGKYEEALED 56

Query: 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            +KAL++  D        A     +G+ YY LG Y ++ ++++ A+ 
Sbjct: 57  YEKALELDPD-------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 389 LEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSR 447
            + AA    + L+    GD++ ALE L  A  +     +   E A    ++   YL+L  
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 448 YDEAGFAYQKALTAFK 463
           YDEA    +KAL   +
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 237 NPQKALELALRAAKSFE-IGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
           +  +ALEL  +A +    +G +     E    L+ +A +Y +LG Y+EA+  LE+++ +
Sbjct: 20  DYDEALELLEKALELARELGED---HPETARALNNLARLYLALGDYDEALEYLEKALAL 75

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA 410
           E    L   + +   + EA ++ + AL++  DN              +       G +E 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA--------YYNLAAAYYKLGKYEE 52

Query: 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
           ALE    A       + D + A    ++G  Y  L +Y+EA  AY+KAL
Sbjct: 53  ALEDYEKAL------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
           T    +NLA    A GR ++A E+LE  + IR   LG  +PD
Sbjct: 1   TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42

Length = 42

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697
           HPD     +NLA     +G  D+A+E+LE  + +  E LG  +P+        A  L   
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPET-------ARALNNL 52

Query: 698 GRVRS---RKAQSLETLLDA 714
            R+        ++LE L  A
Sbjct: 53  ARLYLALGDYDEALEYLEKA 72

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
            P +      LA    +   + EA +  + AL++ ++ G     E A     +  +    
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELG-EDHPETARALNNLARLYLAL 59

Query: 406 GDHEAALEHL 415
           GD++ ALE+L
Sbjct: 60  GDYDEALEYL 69

Length = 78

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 38/148 (25%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 79  FGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKL 138
           + SD   S  D E R     +    EI  + E+E+ ED   S     +     SKK  KL
Sbjct: 286 YISDSSASGNDPEERE----DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKL 341

Query: 139 EKSQSAG----TKSISSGHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDKGVKKSN--- 191
           +K +            SG     S    +  VS  T  K K   ++ P+D          
Sbjct: 342 KKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSG 401

Query: 192 -AGATPMKKRKGKLHKGQDVSEAGLDKP 218
            A  +P  K KGK     +VS++    P
Sbjct: 402 PARPSPESKDKGKRKAANEVSKSPASVP 429

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	729
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.98
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
PRK14574	822	hmsH outer membrane protein; Provisional	99.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.91
KOG1126	638	consensus DNA-binding cell division cycle control	99.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.91
KOG2003	840	consensus TPR repeat-containing protein [General f	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.91
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.9
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.9
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.89
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.88
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.88
PLN03218	1060	maturation of RBCL 1; Provisional	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.87
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.86
PLN03218	1060	maturation of RBCL 1; Provisional	99.85
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.84
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.83
PLN03077	857	Protein ECB2; Provisional	99.82
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.82
PRK04841	903	transcriptional regulator MalT; Provisional	99.82
PRK04841	903	transcriptional regulator MalT; Provisional	99.79
KOG1129	478	consensus TPR repeat-containing protein [General f	99.79
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.79
PLN03077	857	Protein ECB2; Provisional	99.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.78
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.78
KOG1129	478	consensus TPR repeat-containing protein [General f	99.78
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.77
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.77
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.74
PRK12370	553	invasion protein regulator; Provisional	99.73
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.73
PRK12370	553	invasion protein regulator; Provisional	99.72
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.72
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.72
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.72
PRK11189	296	lipoprotein NlpI; Provisional	99.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.71
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.7
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.7
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.69
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.69
KOG1125	579	consensus TPR repeat-containing protein [General f	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.68
PRK11189	296	lipoprotein NlpI; Provisional	99.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.67
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.67
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.67
KOG1125	579	consensus TPR repeat-containing protein [General f	99.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.64
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.63
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.59
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.52
PLN02789	320	farnesyltranstransferase	99.51
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.48
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.46
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.46
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.46
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.44
PLN02789	320	farnesyltranstransferase	99.41
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.39
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.39
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.35
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.33
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.32
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.31
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.3
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.26
PRK15359	144	type III secretion system chaperone protein SscB;	99.26
PRK15359	144	type III secretion system chaperone protein SscB;	99.24
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.22
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.2
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.2
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.19
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.19
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.1
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.09
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.08
KOG0553	304	consensus TPR repeat-containing protein [General f	99.07
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.05
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.04
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.03
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.02
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.01
KOG0553	304	consensus TPR repeat-containing protein [General f	99.01
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.0
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.97
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.96
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.95
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.95
KOG1585	308	consensus Protein required for fusion of vesicles	98.93
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.92
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.89
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.86
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.85
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.82
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.81
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.81
KOG2471	696	consensus TPR repeat-containing protein [General f	98.8
KOG1585	308	consensus Protein required for fusion of vesicles	98.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.8
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.79
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.78
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.77
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.76
KOG1586	288	consensus Protein required for fusion of vesicles	98.76
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.75
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.73
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.73
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.71
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.7
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.69
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.68
KOG1586	288	consensus Protein required for fusion of vesicles	98.67
PRK10803	263	tol-pal system protein YbgF; Provisional	98.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.64
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.63
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.62
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.6
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.59
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.58
KOG2471	696	consensus TPR repeat-containing protein [General f	98.58
PF12688	120	TPR_5: Tetratrico peptide repeat	98.56
PF12688	120	TPR_5: Tetratrico peptide repeat	98.52
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.52
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.51
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.51
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.5
PRK10803	263	tol-pal system protein YbgF; Provisional	98.48
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.46
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.45
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.44
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.42
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.39
KOG4234	271	consensus TPR repeat-containing protein [General f	98.38
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.38
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.37
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.36
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.36
KOG4555	175	consensus TPR repeat-containing protein [Function	98.35
KOG4555	175	consensus TPR repeat-containing protein [Function	98.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.33
KOG4234	271	consensus TPR repeat-containing protein [General f	98.32
PRK11906	458	transcriptional regulator; Provisional	98.29
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.29
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.29
PF13512	142	TPR_18: Tetratricopeptide repeat	98.27
PRK11906	458	transcriptional regulator; Provisional	98.26
PRK15331	165	chaperone protein SicA; Provisional	98.25
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.25
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.23
PRK15331	165	chaperone protein SicA; Provisional	98.23
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.18
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.16
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.14
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.11
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.1
PF13512	142	TPR_18: Tetratricopeptide repeat	98.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.09
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.08
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.07
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.06
PF13371	73	TPR_9: Tetratricopeptide repeat	98.05
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.03
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.01
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.01
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.94
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.94
PF13371	73	TPR_9: Tetratricopeptide repeat	97.91
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.9
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.9
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.85
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.85
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.84
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.83
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.81
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.68
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.65
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.65
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.62
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.59
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.58
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.53
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.52
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.52
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.51
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.48
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.46
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.45
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.43
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.42
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.41
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.39
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.38
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.38
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.36
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.33
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.28
PF13428	44	TPR_14: Tetratricopeptide repeat	97.27
PF13428	44	TPR_14: Tetratricopeptide repeat	97.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.24
KOG1258	577	consensus mRNA processing protein [RNA processing	97.22
KOG1258	577	consensus mRNA processing protein [RNA processing	97.15
PF13431	34	TPR_17: Tetratricopeptide repeat	97.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.09
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.07
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.05
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.02
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.97
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.9
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.85
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.75
PF13431	34	TPR_17: Tetratricopeptide repeat	96.72
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.66
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.65
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.64
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.5
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.27
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.23
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.09
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.06
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.02
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.93
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.83
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.82
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	95.78
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.72
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.61
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.58
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	95.54
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.53
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.33
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.33
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.14
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.08
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.03
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.99
PRK14707	2710	hypothetical protein; Provisional	94.95
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	94.93
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.86
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.76
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.76
COG5187	412	RPN7 26S proteasome regulatory complex component,	94.76
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.72
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.68
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.67
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.57
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.5
PRK14707	2710	hypothetical protein; Provisional	94.49
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.48
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.42
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.42
KOG0687	393	consensus 26S proteasome regulatory complex, subun	94.39
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.28
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.21
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.91
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.78
PRK10941	269	hypothetical protein; Provisional	93.78
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.72
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.66
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.62
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.44
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.35
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.12
COG3947	361	Response regulator containing CheY-like receiver a	93.0
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.84
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.74
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.53
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.52
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.44
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	92.31
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.29
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.96
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.95
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.9
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.28
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.26
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.17
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.09
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.97
KOG2422	665	consensus Uncharacterized conserved protein [Funct	90.87
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.79
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	90.77
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.7
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.42
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	90.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.2
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	90.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.89
PRK10941	269	hypothetical protein; Provisional	89.61
KOG4014	248	consensus Uncharacterized conserved protein (conta	89.55
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	89.49
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.37
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	89.34
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.34
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.3
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	88.95
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.52
KOG1310	758	consensus WD40 repeat protein [General function pr	88.35
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.16
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	88.08
KOG3364	149	consensus Membrane protein involved in organellar	87.69
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.55
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	87.45
KOG2908	380	consensus 26S proteasome regulatory complex, subun	87.13
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.06
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.96
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	86.93
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	86.68
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.52
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	86.48
KOG2908	380	consensus 26S proteasome regulatory complex, subun	86.3
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.79
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	85.45
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	85.4
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	84.92
KOG1310	758	consensus WD40 repeat protein [General function pr	84.91
KOG2422	665	consensus Uncharacterized conserved protein [Funct	84.85
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	84.79
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.66
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	84.29
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	84.24
KOG4014	248	consensus Uncharacterized conserved protein (conta	83.48
COG4976	287	Predicted methyltransferase (contains TPR repeat)	82.65
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.48
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	82.3
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	81.7
PRK09169	2316	hypothetical protein; Validated	80.76
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.19
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.05

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-45  Score=363.62  Aligned_cols=426  Identities=20%  Similarity=0.275  Sum_probs=275.6

Q ss_pred             cccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCCh
Q 004811          202 GKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY  281 (729)
Q Consensus       202 ~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  281 (729)
                      +|.++.+--.-....+|.....++.++..+++..+ +++....-..|++..         |..+.+|.++|.++...|++
T Consensus        63 d~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r-~d~s~a~~~~a~r~~---------~q~ae~ysn~aN~~kerg~~  132 (966)
T KOG4626|consen   63 DYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSR-LDKSSAGSLLAIRKN---------PQGAEAYSNLANILKERGQL  132 (966)
T ss_pred             CHHHHHHHHhHhhccCCCcccceeeehhhhhcccc-hhhhhhhhhhhhhcc---------chHHHHHHHHHHHHHHhchH
Confidence            33333333333444444444444444444444443 455544444444432         44566666677777777777


Q ss_pred             HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004811          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (729)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (729)
                      ++|+.+|+.++++.         +..+.+|.++|.++...|+.+.|..+|..++++        +|...-+...+|.++.
T Consensus       133 ~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~ca~s~lgnLlk  195 (966)
T KOG4626|consen  133 QDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYCARSDLGNLLK  195 (966)
T ss_pred             HHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------CcchhhhhcchhHHHH
Confidence            77777777776664         123445667777777777777777777777766        5666666666777776


Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (729)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (729)
                      ..|+..+|..+|.+|++..+..        +.+|.+||.++...|+...|+.+|++|+.      .+|....+|++||.+
T Consensus       196 a~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvk------ldP~f~dAYiNLGnV  261 (966)
T KOG4626|consen  196 AEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK------LDPNFLDAYINLGNV  261 (966)
T ss_pred             hhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhc------CCCcchHHHhhHHHH
Confidence            6777777777777776665533        34566677777777777777777766654      356666667777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      |...+.|+.|+..|.+|+.+        .|..+.++.++|.+|..+|..+-|+..|++++++         .|....+++
T Consensus       262 ~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------~P~F~~Ay~  324 (966)
T KOG4626|consen  262 YKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------QPNFPDAYN  324 (966)
T ss_pred             HHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc---------CCCchHHHh
Confidence            77777777777777777666        5666667777777777777777777777777666         444556677


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                      +||..+...|+..+|..+|.+++.+.+..       +.+.++||.+|..+|.+++|..+|.++++..        +..+.
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aa  389 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAA  389 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhh
Confidence            77777777777777777777777666555       4566667777777777777777777766653        22456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      +.++||.+|.++|++++|+.+|++++.+        .|..++++.++|..|..+|+...|+..|.+|+.+        +|
T Consensus       390 a~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nP  453 (966)
T KOG4626|consen  390 AHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NP  453 (966)
T ss_pred             hhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------Cc
Confidence            6666777777777777777777777766        6666777777777777777777777777777665        56


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..++++.+||.+|...|+..+|+ ..|+.+|+++|+
T Consensus       454 t~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPD  488 (966)
T KOG4626|consen  454 TFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPD  488 (966)
T ss_pred             HHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCC
Confidence            66777777777777777777776 777777777666

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-43  Score=351.36  Aligned_cols=420  Identities=20%  Similarity=0.253  Sum_probs=382.7

Q ss_pred             cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (729)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (729)
                      .........+|..+.++-.+|+.|..+|+ ++.|+.+|+.++++-         |+.+++|.++|.++...|+.+.|...
T Consensus       103 a~~~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~~a~~~  172 (966)
T KOG4626|consen  103 AGSLLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLELAVQC  172 (966)
T ss_pred             hhhhhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCcccHHH
Confidence            34455677889999999999999999998 999999999999863         67799999999999999999999999


Q ss_pred             HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004811          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS  367 (729)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  367 (729)
                      |..++++.+         ...-++..+|.++-.+|+..+|..+|.+|++.        .|..+.+|.+||.++..+|+..
T Consensus       173 ~~~alqlnP---------~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~  235 (966)
T KOG4626|consen  173 FFEALQLNP---------DLYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIW  235 (966)
T ss_pred             HHHHHhcCc---------chhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHH
Confidence            999999972         23345778999999999999999999999999        7999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004811          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR  447 (729)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  447 (729)
                      .|+.+|++|+.+.|...        .+|.+||.+|...+.++.|+..|.+|+.      ..|..+.++.++|.+|+.+|.
T Consensus       236 ~aiq~y~eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~iYyeqG~  301 (966)
T KOG4626|consen  236 LAIQHYEEAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACIYYEQGL  301 (966)
T ss_pred             HHHHHHHHhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEEEecccc
Confidence            99999999999988775        4699999999999999999999999975      478888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004811          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (729)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (729)
                      .+-|+..|++++++        .|....++.+||..+-..|+..+|..+|.+++.+         .+..+.++++||.+|
T Consensus       302 ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~  364 (966)
T KOG4626|consen  302 LDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIY  364 (966)
T ss_pred             HHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHH
Confidence            99999999999999        8999999999999999999999999999999999         445578999999999


Q ss_pred             HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004811          528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (729)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  607 (729)
                      ..+|.+++|..+|.++++..+..       +.+..+||.+|..+|++++|+.+|++++.+        .+..+.++.++|
T Consensus       365 ~E~~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmG  429 (966)
T KOG4626|consen  365 REQGKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMG  429 (966)
T ss_pred             HHhccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcc
Confidence            99999999999999999998876       678899999999999999999999999997        355899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 004811          608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK  687 (729)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~  687 (729)
                      ..|..+|+...|+.+|.+|+.+        +|..++++.+||.+|...|+..+|+..|+.++++        .|+..+++
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--------kPDfpdA~  493 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--------KPDFPDAY  493 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--------CCCCchhh
Confidence            9999999999999999999999        9999999999999999999999999999999988        68888999


Q ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          688 RRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .+|+.++.-..++.+-- +.+.++.++-.+
T Consensus       494 cNllh~lq~vcdw~D~d-~~~~kl~sivrd  522 (966)
T KOG4626|consen  494 CNLLHCLQIVCDWTDYD-KRMKKLVSIVRD  522 (966)
T ss_pred             hHHHHHHHHHhcccchH-HHHHHHHHHHHH
Confidence            99999888777776655 555555554433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.5e-31  Score=298.39  Aligned_cols=421  Identities=17%  Similarity=0.152  Sum_probs=317.5

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (729)
                      .+..+..+|..++..|+ |++|+.+|++|+.+.       |+   ...+.++|.||..+|++++|+..+++++++.    
T Consensus       126 ~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~-------p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----  190 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK-------PD---PVYYSNRAACHNALGDWEKVVEDTTAALELD----  190 (615)
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-------Cc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence            45678899999999997 999999999999863       22   3468899999999999999999999999985    


Q ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (729)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (729)
                       ++.    ..+++.+|.+|..+|++++|+..|..++...     ..........  +...+.     ..+...+..+++.
T Consensus       191 -p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~-----~~a~~~~~~~l~~  253 (615)
T TIGR00990       191 -PDY----SKALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQA--VERLLK-----KFAESKAKEILET  253 (615)
T ss_pred             -CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHH--HHHHHH-----HHHHHHHHHHHhc
Confidence             333    3469999999999999999999997765441     0011110000  000000     1111111111111


Q ss_pred             HHhcCCC-------------------------CCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004811          380 HKDNGSP-------------------------ASLEEAADRRLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEV  431 (729)
Q Consensus       380 ~~~~~~~-------------------------~~~~~a~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (729)
                      .+.....                         ........+..++..+   ...++|++|+..|++++...   ...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~  330 (615)
T TIGR00990       254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKE  330 (615)
T ss_pred             CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhh
Confidence            1110000                         0000011233334332   23478999999999887532   235677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      +.++..+|.++..+|++++|+..|++++.+        +|....++..+|.++...|++++|+.+|++++++        
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------  394 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------  394 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            889999999999999999999999999998        7888899999999999999999999999999988        


Q ss_pred             ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                       .|....++..+|.++...|++++|+.+|++++.+.+..       ...+..+|.++..+|++++|+..|++++...   
T Consensus       395 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---  463 (615)
T TIGR00990       395 -NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF---  463 (615)
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence             33346789999999999999999999999999987654       4678899999999999999999999999863   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                           +....++..+|.++...|++++|+..|++++.+...... ........+...+.++...|++++|+.++++++.+
T Consensus       464 -----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       464 -----PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKALII  537 (615)
T ss_pred             -----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                 223578899999999999999999999999998222100 01111112222333445579999999999999976


Q ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       672 ~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                              +|+...++..||.++...|++++|+ ..|++++++.+.
T Consensus       538 --------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~  574 (615)
T TIGR00990       538 --------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART  574 (615)
T ss_pred             --------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence                    5777888999999999999999999 999999998874

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=1.8e-30  Score=268.31  Aligned_cols=421  Identities=40%  Similarity=0.524  Sum_probs=359.8

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004811          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (729)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (729)
                      .+.....++..++.....+..+.+.+....++++..++....    .....+......++..+.+++|....++......
T Consensus        84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~  159 (508)
T KOG1840|consen   84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV  159 (508)
T ss_pred             cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence            455666778888888888777888888888888877665311    1112356667777788888888888877765431


Q ss_pred             hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (729)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (729)
                                    ...++..+...-+.+.....+...+.+..+..+..+|....+...++..|..+|+|+.|+..|+++
T Consensus       160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A  225 (508)
T KOG1840|consen  160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA  225 (508)
T ss_pred             --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                          111333333333444666777777777777788889999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (729)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (729)
                      +++..+..+.                                        .++.+...+..+|.+|..++++.+|+..|+
T Consensus       226 l~~l~k~~G~----------------------------------------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~  265 (508)
T KOG1840|consen  226 LRILEKTSGL----------------------------------------KHLVVASMLNILALVYRSLGKYDEAVNLYE  265 (508)
T ss_pred             HHHHHHccCc----------------------------------------cCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9885443321                                        344555556679999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH
Q 004811          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (729)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (729)
                      +|+.+.+...|+++|..+.++.+||.+|...|++++|..++++|++++++ ..+..++.+...+.+++.++..++++++|
T Consensus       266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-LLGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            99999999999999999999999999999999999999999999999998 45788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004811          537 IKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (729)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  615 (729)
                      +.+++++++++.+.++... .++.++.+||.+|..+|+|++|.++|++|+.+.+...+.........++++|..|.+.++
T Consensus       345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            9999999999998888887 899999999999999999999999999999999999888778889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (729)
                      +.+|..+|.+++.+. ...|+++|+....|.+||.+|..+|++++|+++.++++...++.+|..+|........++....
T Consensus       425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (508)
T KOG1840|consen  425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK  503 (508)
T ss_pred             cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999999998887777776654


Q ss_pred             Hh
Q 004811          696 EA  697 (729)
Q Consensus       696 ~~  697 (729)
                      ..
T Consensus       504 ~~  505 (508)
T KOG1840|consen  504 EA  505 (508)
T ss_pred             Hh
Confidence            43

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.4e-31  Score=312.16  Aligned_cols=424  Identities=17%  Similarity=0.170  Sum_probs=287.5

Q ss_pred             cccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCCh
Q 004811          202 GKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY  281 (729)
Q Consensus       202 ~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  281 (729)
                      ++..+...+.......|.....+..+|..+...|+ +++|+.+|+++++..         |....++..+|.++...|++
T Consensus       446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~  515 (899)
T TIGR02917       446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE---------PDFFPAAANLARIDIQEGNP  515 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCCCH
Confidence            33333333344444555566666666666666665 666666666666542         22344566666666667777


Q ss_pred             HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004811          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (729)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (729)
                      ++|+..|++++...     +.+    ..++..++.++...|++++|+.++++++..        +|.....+..++.++.
T Consensus       516 ~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~  578 (899)
T TIGR02917       516 DDAIQRFEKVLTID-----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYL  578 (899)
T ss_pred             HHHHHHHHHHHHhC-----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHH
Confidence            77777776666553     222    223566666666677777777777666655        4555556666677777


Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (729)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (729)
                      ..|++++|+..+++++...+..        ..++..+|.++...|++++|+..|++++..      .+....++..+|.+
T Consensus       579 ~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~  644 (899)
T TIGR02917       579 GKGQLKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADA  644 (899)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHH
Confidence            7777777777776666544322        245667777777777777777777766543      23334556667777


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      +...|++++|+.+|++++..        .|....++..++.++...|++++|+.+++.+...         .+.....+.
T Consensus       645 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~  707 (899)
T TIGR02917       645 YAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---------HPKAALGFE  707 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCChHHHH
Confidence            77777777777777777765        4555666677777777777777777777666555         122344566


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                      .+|.++...|++++|+..|++++...+..        ..+..++.++...|++++|+..+++++...        +....
T Consensus       708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~  771 (899)
T TIGR02917       708 LEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PNDAV  771 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH
Confidence            77888888888888888888887764432        345667888888888888888887777641        11346


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      ++..+|.+|...|++++|+.+|+++++.        +|....++..++.++...|+ .+|+.++++++.+        .|
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~  834 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------AP  834 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CC
Confidence            7788888888888888888888888887        67777788888888888888 7788888888875        35


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +....+..+|.++...|++++|. ..|+++++.+|.
T Consensus       835 ~~~~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~~~  869 (899)
T TIGR02917       835 NIPAILDTLGWLLVEKGEADRAL-PLLRKAVNIAPE  869 (899)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            55666778888888888888888 888888888885

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3e-30  Score=305.87  Aligned_cols=442  Identities=20%  Similarity=0.164  Sum_probs=247.8

Q ss_pred             cccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811          196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (729)
Q Consensus       196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~  275 (729)
                      .+...+++..++..+.......|.....+..+|..+...|+ +++|+.+|++++...         |....++..+|.++
T Consensus       338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~  407 (899)
T TIGR02917       338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD-FEKAAEYLAKATELD---------PENAAARTQLGISK  407 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------CCCHHHHHHHHHHH
Confidence            34445555555555555555556666666666666666665 666666666665431         22244455556666


Q ss_pred             HHcCChHHHHHHHHHhcccchhhc-----------------------------cccchHHHHHHHHHHHHHHHHcCCHHH
Q 004811          276 CSLGQYNEAIPVLEQSIEIPVIEE-----------------------------GQEHALAKFAGHMQLGDTYAMLGQLEN  326 (729)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~  326 (729)
                      ...|++++|+..|++++.......                             .+.    ....+..+|.++...|++++
T Consensus       408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~  483 (899)
T TIGR02917       408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD----NASLHNLLGAIYLGKGDLAK  483 (899)
T ss_pred             HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CcHHHHHHHHHHHhCCCHHH
Confidence            666666666666665554431100                             001    11235556666666666666


Q ss_pred             HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhC
Q 004811          327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG  406 (729)
Q Consensus       327 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g  406 (729)
                      |+.+|+++++.        +|....++..++.++...|++++|+..|++++...+..        ..++..++.++...|
T Consensus       484 A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~  547 (899)
T TIGR02917       484 AREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN--------LRAILALAGLYLRTG  547 (899)
T ss_pred             HHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHcC
Confidence            66666666655        45555566666666666666666666666666554332        233555555555556


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (729)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (729)
                      ++++|+.++.+++..      .+.....+..++.++...|++++|+.++++++..        .|....++..+|.++..
T Consensus       548 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~  613 (899)
T TIGR02917       548 NEEEAVAWLEKAAEL------NPQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLA  613 (899)
T ss_pred             CHHHHHHHHHHHHHh------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence            666665555555432      1222233444555555555555555555554443        33334445555555555


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC---------------
Q 004811          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP---------------  551 (729)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------  551 (729)
                      .|++++|+..|+++++..         +....++..++.++...|++++|+.+|++++...+...               
T Consensus       614 ~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  684 (899)
T TIGR02917       614 AGDLNKAVSSFKKLLALQ---------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR  684 (899)
T ss_pred             cCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence            555555555555555441         11223444555555555555555555555544332210               


Q ss_pred             ------------CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHH
Q 004811          552 ------------GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA  619 (729)
Q Consensus       552 ------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  619 (729)
                                  ...+.....+..+|.++...|++++|+..|++++....     .    ...+..++.++...|++++|
T Consensus       685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A  755 (899)
T TIGR02917       685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-----S----SQNAIKLHRALLASGNTAEA  755 (899)
T ss_pred             HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----C----chHHHHHHHHHHHCCCHHHH
Confidence                        00001123445566666666666666666666665411     1    13455566777777777777


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                      +..+++++..        +|....++..+|.+|...|++++|+.+|+++++.        +|....++..++.++...|+
T Consensus       756 ~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       756 VKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc
Confidence            7777776665        5666667777777777777777777777777765        45666677777777777777


Q ss_pred             HhHHHHHHHHHHHhhccc
Q 004811          700 VRSRKAQSLETLLDANSR  717 (729)
Q Consensus       700 ~~~A~~~~l~~al~~~p~  717 (729)
                       .+|+ ..+++++.+.|+
T Consensus       820 -~~A~-~~~~~~~~~~~~  835 (899)
T TIGR02917       820 -PRAL-EYAEKALKLAPN  835 (899)
T ss_pred             -HHHH-HHHHHHHhhCCC
Confidence             6677 777777777766

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.9e-30  Score=289.47  Aligned_cols=414  Identities=18%  Similarity=0.131  Sum_probs=314.4

Q ss_pred             cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (729)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (729)
                      ..+..+...++|..|+..+..+....|+ ...+..+|.++...|+ +++|+..+.+|+++.         |+...++..+
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~---------p~~~~a~~~~  200 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGD-WEKVVEDTTAALELD---------PDYSKALNRR  200 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC---------CCCHHHHHHH
Confidence            4455667778889999888888888886 6789999999999998 999999999999863         5567889999


Q ss_pred             HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------
Q 004811          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK------------  339 (729)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------  339 (729)
                      |.+|..+|++++|+..|..++.+..    ...... ...+.   ..+.     ..+...+..++....            
T Consensus       201 a~a~~~lg~~~eA~~~~~~~~~~~~----~~~~~~-~~~~~---~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~  267 (615)
T TIGR00990       201 ANAYDGLGKYADALLDLTASCIIDG----FRNEQS-AQAVE---RLLK-----KFAESKAKEILETKPENLPSVTFVGNY  267 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC----CccHHH-HHHHH---HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence            9999999999999999987765531    111100 00000   0000     011111111111000            


Q ss_pred             -HH------------hCCCCchHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004811          340 -QV------------LGETDPRVGETCRYLAEAHV---QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE  403 (729)
Q Consensus       340 -~~------------~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~  403 (729)
                       ..            ....++.....+..++..+.   ..++|++|+..|++++....     ..+..+.++..+|.++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~  342 (615)
T TIGR00990       268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKC  342 (615)
T ss_pred             HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHH
Confidence             00            00002223333444443332   34689999999999997651     12344678999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM  483 (729)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  483 (729)
                      .+|++++|+..|++++.+      .|.....+..+|.++...|++++|+.+|++++++        +|....++..+|.+
T Consensus       343 ~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~  408 (615)
T TIGR00990       343 LKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQL  408 (615)
T ss_pred             HcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            999999999999999864      5666778999999999999999999999999998        67788999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 004811          484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ  563 (729)
Q Consensus       484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  563 (729)
                      +...|++++|+.+|++++.+         .|....++..+|.++..+|++++|+..|++++...+..       ..++..
T Consensus       409 ~~~~g~~~~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~  472 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYNY  472 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHH
Confidence            99999999999999999998         34456778999999999999999999999999887655       467889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (729)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (729)
                      +|.++...|++++|+..|++++.+.+...... ......+...+.++...|++++|+.+|++++.+        +|+...
T Consensus       473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~  543 (615)
T TIGR00990       473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDI  543 (615)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHH
Confidence            99999999999999999999998754322211 111122233333444579999999999999998        788888


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      ++..+|.++..+|++++|+.+|++++++.+
T Consensus       544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       544 AVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998853

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.4e-29  Score=300.49  Aligned_cols=455  Identities=15%  Similarity=0.063  Sum_probs=345.3

Q ss_pred             CcccccccccccccCcccccCCCCCCChHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811          193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLL-KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (729)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~-~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (729)
                      .+..+...+++.+|++.+......+|.....-. .........|+ +++|+..++++++..         |....++..+
T Consensus       118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~---------P~~~~~~~~L  187 (1157)
T PRK11447        118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY---------PGNTGLRNTL  187 (1157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC---------CCCHHHHHHH
Confidence            344566778888888777777777776653222 12222233576 999999999988864         4446678889


Q ss_pred             HHHHHHcCChHHHHHHHHHhcccchhhc-------------c----------------ccch-HHHH-H-----------
Q 004811          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEE-------------G----------------QEHA-LAKF-A-----------  309 (729)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~----------------~~~~-~~~~-~-----------  309 (729)
                      |.+++..|++++|+..|++++.......             .                +... .... .           
T Consensus       188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d  267 (1157)
T PRK11447        188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD  267 (1157)
T ss_pred             HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999865421000             0                0000 0000 0           


Q ss_pred             ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811          310 ---GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (729)
Q Consensus       310 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (729)
                         ....+|.++...|++++|+..|+++++.        +|....++..+|.++...|++++|+.+|+++++..+.....
T Consensus       268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~  339 (1157)
T PRK11447        268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR  339 (1157)
T ss_pred             cchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence               0124488899999999999999999998        68889999999999999999999999999999987765432


Q ss_pred             CCHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          387 ASLE------EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (729)
Q Consensus       387 ~~~~------~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (729)
                      ....      .......+|.++...|++++|+..|++++..      .|....++..+|.++...|++++|+.+|+++++
T Consensus       340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~  413 (1157)
T PRK11447        340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALR  413 (1157)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1100      1122345688899999999999999999875      344557888999999999999999999999997


Q ss_pred             HHHHhcCCCChhHHH------------------------------------------HHHHHHHHHHHcCCHHHHHHHHH
Q 004811          461 AFKTNKGENHPAVAS------------------------------------------VFVRLADMYNRTGKLRESKSYCE  498 (729)
Q Consensus       461 ~~~~~~~~~~~~~~~------------------------------------------~~~~la~~~~~~g~~~~A~~~~~  498 (729)
                      +        .|....                                          .+..+|.++...|++++|+..|+
T Consensus       414 ~--------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~  485 (1157)
T PRK11447        414 M--------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR  485 (1157)
T ss_pred             h--------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6        222222                                          23345666778899999999999


Q ss_pred             HHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004811          499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY  578 (729)
Q Consensus       499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  578 (729)
                      +++++         .|....+++.+|.+|...|++++|+..+++++...+..       ...++.++..+...+++++|+
T Consensus       486 ~Al~~---------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------~~~~~a~al~l~~~~~~~~Al  549 (1157)
T PRK11447        486 QRLAL---------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-------PEQVYAYGLYLSGSDRDRAAL  549 (1157)
T ss_pred             HHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHHH
Confidence            99988         33445678999999999999999999999998865543       244555666666677777776


Q ss_pred             HHHHHHH-------------------------------------HHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          579 DSFKNAI-------------------------------------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE  621 (729)
Q Consensus       579 ~~~~~al-------------------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  621 (729)
                      .+++++.                                     .+++.    . +.....+..+|.++...|++++|+.
T Consensus       550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~-p~~~~~~~~La~~~~~~g~~~~A~~  624 (1157)
T PRK11447        550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----Q-PPSTRIDLTLADWAQQRGDYAAARA  624 (1157)
T ss_pred             HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----C-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence            6655421                                     11111    1 1123467889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004811          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR  701 (729)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~  701 (729)
                      +|+++++.        +|+...++..++.+|...|++++|+..|++++..        .|+...++..+|.++...|+++
T Consensus       625 ~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~  688 (1157)
T PRK11447        625 AYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTA  688 (1157)
T ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHH
Confidence            99999998        8888899999999999999999999999988754        5777788899999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 004811          702 SRKAQSLETLLDANSR  717 (729)
Q Consensus       702 ~A~~~~l~~al~~~p~  717 (729)
                      +|. ..|++++...|+
T Consensus       689 eA~-~~~~~al~~~~~  703 (1157)
T PRK11447        689 AAQ-RTFNRLIPQAKS  703 (1157)
T ss_pred             HHH-HHHHHHhhhCcc
Confidence            999 999999998765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=4.4e-29  Score=296.27  Aligned_cols=448  Identities=14%  Similarity=0.115  Sum_probs=343.1

Q ss_pred             cccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----------HHhcCC----------
Q 004811          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF-----------EIGANG----------  258 (729)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-----------~~~~~~----------  258 (729)
                      .+++.++++.+..+...+|+...+++.+|..++..|+ +++|+..+++++...           ..+...          
T Consensus       160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l  238 (1157)
T PRK11447        160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL  238 (1157)
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence            4666778888888999999999999999999999997 999999999875421           000000          


Q ss_pred             ------CCC-HhHHH-----------------HHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHH
Q 004811          259 ------KPS-LELVM-----------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL  314 (729)
Q Consensus       259 ------~~~-~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  314 (729)
                            .+. +....                 ....+|.++...|++++|+..|+++++..     +.++    .++..+
T Consensus       239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-----P~~~----~a~~~L  309 (1157)
T PRK11447        239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-----PKDS----EALGAL  309 (1157)
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHH
Confidence                  000 10000                 11234888999999999999999999885     4333    358999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811          315 GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (729)
Q Consensus       315 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (729)
                      |.++..+|++++|+.+|+++++..+.     .+.           .......+|.++...|++++|+.+|++++.+.|..
T Consensus       310 g~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~  384 (1157)
T PRK11447        310 GQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD  384 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999987321     111           11223456888999999999999999999987644


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC------------hh---------------------
Q 004811          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD------------AE---------------------  430 (729)
Q Consensus       384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~---------------------  430 (729)
                              ..++..+|.++...|++++|+.+|++++.+.......            +.                     
T Consensus       385 --------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~  456 (1157)
T PRK11447        385 --------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE  456 (1157)
T ss_pred             --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence                    3568899999999999999999999997542211000            00                     


Q ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          431 ---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       431 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                         ....+..+|.++...|++++|+..|++++++        .|....+++.+|.+|...|++++|+..|++++...   
T Consensus       457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---  525 (1157)
T PRK11447        457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---  525 (1157)
T ss_pred             HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence               0122345677788899999999999999998        78888999999999999999999999999998862   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------------------HHHHhC
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL-------------------------------------KIYNDA  550 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~~  550 (729)
                            |.....++.++.++...+++++|+.+++++.                                     .+....
T Consensus       526 ------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~  599 (1157)
T PRK11447        526 ------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ  599 (1157)
T ss_pred             ------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence                  2223445556666666666666666554321                                     111111


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (729)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (729)
                      +    ....++..+|.++...|++++|+.+|+++++..        +....++..++.++...|++++|+.+|++++.. 
T Consensus       600 p----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-  666 (1157)
T PRK11447        600 P----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-  666 (1157)
T ss_pred             C----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence            1    113456789999999999999999999999862        224578999999999999999999999998877 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh---hHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004811          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP---DVDDEKRRLAELLKEAGRVRSRKAQS  707 (729)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p---~~~~~~~~La~~~~~~g~~~~A~~~~  707 (729)
                             .|+...++..+|.++..+|++++|+.+|++++...     +.+|   ..+.++..+|.++...|++++|+ ..
T Consensus       667 -------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~  733 (1157)
T PRK11447        667 -------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQPQQAL-ET  733 (1157)
T ss_pred             -------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HH
Confidence                   67777889999999999999999999999998753     2222   24567778899999999999999 99


Q ss_pred             HHHHHh
Q 004811          708 LETLLD  713 (729)
Q Consensus       708 l~~al~  713 (729)
                      |++++.
T Consensus       734 y~~Al~  739 (1157)
T PRK11447        734 YKDAMV  739 (1157)
T ss_pred             HHHHHh
Confidence            999985

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.98  E-value=4.9e-29  Score=262.33  Aligned_cols=460  Identities=17%  Similarity=0.160  Sum_probs=367.6

Q ss_pred             cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (729)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (729)
                      ..+..+-..+|.++.++..+++.++..|+ |..+..++..|+...      ...+..+..++.+|.+|..+|+|++|..+
T Consensus       257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y  329 (1018)
T KOG2002|consen  257 QLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKAFKY  329 (1018)
T ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            44555667788889999999999999997 999999999988763      23356678899999999999999999999


Q ss_pred             HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---
Q 004811          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---  364 (729)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---  364 (729)
                      |.+++...     +++   .+-.++.+|.+|...|+++.|+.+|++++..        .|...++...||.+|...+   
T Consensus       330 Y~~s~k~~-----~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~  393 (1018)
T KOG2002|consen  330 YMESLKAD-----NDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQ  393 (1018)
T ss_pred             HHHHHccC-----CCC---ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhh
Confidence            99999886     222   1224889999999999999999999999988        6889999999999998876   


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004811          365 -QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL  443 (729)
Q Consensus       365 -~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  443 (729)
                       ..+.|..++.++++..+..        ..+|..++.++....-+.. +.+|..|+.++...... .-...++++|..++
T Consensus       394 ~~~d~a~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf  463 (1018)
T KOG2002|consen  394 EKRDKASNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHF  463 (1018)
T ss_pred             HHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHH
Confidence             5678888888888776444        4668999998876655555 99999999777766554 44678899999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          444 SLSRYDEAGFAYQKALTAFKTNKGENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      ..|++.+|..+|..|+..+......+.  .......+++|.++...++++.|...|...+..         +|....++.
T Consensus       464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~yl  534 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDAYL  534 (1018)
T ss_pred             HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHHHH
Confidence            999999999999999998654332222  233556899999999999999999999999998         778889999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-----------------------------cHHHHHHHHHHHHHHc-
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----------------------------TVAGIEAQMGVMYYML-  571 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~~la~~~~~~-  571 (729)
                      .+|......+...+|..++..++.+....+....                             .-+.++..||.+|+.. 
T Consensus       535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l  614 (1018)
T KOG2002|consen  535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL  614 (1018)
T ss_pred             HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence            9998888889999999999988876544321110                             0123344566666542 


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          572 ----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (729)
Q Consensus       572 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (729)
                          .+.+.+..++.+|++++.+....+|. ...+-+.+|.++...|++.+|+..|.++.+.        ..+...+|.+
T Consensus       615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--------~~~~~dv~lN  685 (1018)
T KOG2002|consen  615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREA--------TSDFEDVWLN  685 (1018)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHH--------HhhCCceeee
Confidence                33455667777777776655444433 5678899999999999999999999999887        3345568999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccc
Q 004811          648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIEL  725 (729)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~  725 (729)
                      ||.||..+|+|..|++.|+.++..+-      ..+...++..||+++.+.|.+.+|. .++..++.+.|.  ...++++.
T Consensus       686 lah~~~e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~~~~v~FN~a~  758 (1018)
T KOG2002|consen  686 LAHCYVEQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPSNTSVKFNLAL  758 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCccchHHhHHHH
Confidence            99999999999999999999998752      2345778899999999999999999 999999999998  55555554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-28  Score=239.51  Aligned_cols=397  Identities=17%  Similarity=0.159  Sum_probs=311.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      ..+..+-..|+.+++.|. |++||.||.+|+.+.         |+.+..|.+++.||...|+|++.++...+++++.   
T Consensus       113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---  179 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---  179 (606)
T ss_pred             HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence            567788999999999997 999999999999985         2335669999999999999999999999999997   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHH-----HHHHhCC-CCchHH----
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY------------------TTGLEV-----QKQVLGE-TDPRVG----  350 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------~~al~~-----~~~~~~~-~~~~~~----  350 (729)
                        +    ....++++.+.++..+|++.+|+...                  ++.|..     ....++. ..|..+    
T Consensus       180 --P----~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f  253 (606)
T KOG0547|consen  180 --P----DYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF  253 (606)
T ss_pred             --c----HHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence              3    34557999999999999999987533                  222221     1222221 111111    


Q ss_pred             -HHHH--------------------HHHHH--HHHh---cCHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHH
Q 004811          351 -ETCR--------------------YLAEA--HVQA---LQFSEAQKFCQMALDIHKDNGSP-----ASLEEAADRRLMG  399 (729)
Q Consensus       351 -~~~~--------------------~la~~--~~~~---g~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~lg  399 (729)
                       ..++                    .+...  +...   ..|.+|...+.+...........     .....+.++...|
T Consensus       254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g  333 (606)
T KOG0547|consen  254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG  333 (606)
T ss_pred             HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence             1111                    01111  1111   25666666666655444332221     1223477889999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (729)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (729)
                      ..++..|++-.|.+.|..++.+      ++.....|..+|.+|....+..+-...|.+|..+        +|..+.+|+.
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH  399 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH  399 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence            9999999999999999999864      3444455899999999999999999999999999        8999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (729)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (729)
                      .|++++.++++++|+..|++++.+         .|..+..+..++.+.+++++++++...|+.+...+|..       ..
T Consensus       400 RgQm~flL~q~e~A~aDF~Kai~L---------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~E  463 (606)
T KOG0547|consen  400 RGQMRFLLQQYEEAIADFQKAISL---------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PE  463 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------ch
Confidence            999999999999999999999999         77788999999999999999999999999999999887       47


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      ++...|.++..+++|++|++.|..|+++.+.......  .+..+...|.+.. ..+++..|+.++++|+++        +
T Consensus       464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------D  533 (606)
T KOG0547|consen  464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------D  533 (606)
T ss_pred             HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc--cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------C
Confidence            8889999999999999999999999998654222111  1122333332222 348999999999999999        9


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (729)
                      |..-.++..||.+..++|+.++|+++|++++.+.+.
T Consensus       534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.97  E-value=7.8e-27  Score=241.36  Aligned_cols=291  Identities=22%  Similarity=0.295  Sum_probs=271.6

Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (729)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (729)
                      ......|....+...++..|..+|+|++|+..++.++++..+..|.+++........+|.+|..++++.+|+.+|++|+.
T Consensus       190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34455788888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSF  581 (729)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~  581 (729)
                      +.+..+ |.+++..+.++.+||.+|...|++++|..++++|+++.....+..+ .++..+.+++.++..++++++|..++
T Consensus       270 i~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~  348 (508)
T KOG1840|consen  270 IREEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL  348 (508)
T ss_pred             HHHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            999876 8889999999999999999999999999999999999998766554 67778899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004811          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA  661 (729)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  661 (729)
                      +++++++....+..+...+.++.+||.+|..+|++.+|.++|++|+.+.++..+..++.....+..||..|.+.+++.+|
T Consensus       349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a  428 (508)
T KOG1840|consen  349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA  428 (508)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence            99999999877777777899999999999999999999999999999999998888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      ..+|.++..+. +.+|+++|+....+.+|+.+|..+|++++|. ++.+.++...-
T Consensus       429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~~~~~  481 (508)
T KOG1840|consen  429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVLNARE  481 (508)
T ss_pred             HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHH
Confidence            99999999999 9999999999999999999999999999999 99998886543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.6e-26  Score=243.54  Aligned_cols=433  Identities=15%  Similarity=0.179  Sum_probs=358.1

Q ss_pred             cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (729)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (729)
                      ..+.-....+|++..+|+..|...|..++ |..|+.+|.+|+.+.+...        +.....+|.|++.+|+.+.|+..
T Consensus       151 a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~--------aD~rIgig~Cf~kl~~~~~a~~a  221 (1018)
T KOG2002|consen  151 AQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK--------ADVRIGIGHCFWKLGMSEKALLA  221 (1018)
T ss_pred             HHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC--------CCccchhhhHHHhccchhhHHHH
Confidence            56667788899999999999999999997 9999999999999865542        22245678999999999999999


Q ss_pred             HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004811          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL  364 (729)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  364 (729)
                      |++++++.     +    ..+.++..||.+-....+   +..++..+.++...        ++..+.++..|+..|+..|
T Consensus       222 ~~ralqLd-----p----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~  284 (1018)
T KOG2002|consen  222 FERALQLD-----P----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKK  284 (1018)
T ss_pred             HHHHHhcC-----h----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcc
Confidence            99999997     2    345567778877665544   45566666666655        5788899999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004811          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (729)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (729)
                      +|..+..+...++....     .....+..++.+|..|..+|+|++|..+|.+++...     +......++.+|.+|..
T Consensus       285 dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~  354 (1018)
T KOG2002|consen  285 DYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQMYIK  354 (1018)
T ss_pred             cHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhHHHHH
Confidence            99999999999987662     224457789999999999999999999999887531     22245677899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004811          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG----KLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (729)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (729)
                      .|+++.|..+|++++..        .|....++..||.+|...+    ..+.|..++.++++.         .+....+|
T Consensus       355 ~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~  417 (1018)
T KOG2002|consen  355 RGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAW  417 (1018)
T ss_pred             hchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHH
Confidence            99999999999999998        7888999999999999886    567777777777776         34557899


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC--hH
Q 004811          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS--AF  598 (729)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~  598 (729)
                      ..++.++....-+.. +.+|..|+.+.......  .-..+++++|..++..|++.+|...|.+|+..+....+.+.  ..
T Consensus       418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~  494 (1018)
T KOG2002|consen  418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST  494 (1018)
T ss_pred             HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence            999999987665555 99999999888876333  33578899999999999999999999999998553322221  22


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      .....+++|.++...++++.|.+.|...+..        +|....++..||......++..+|..++..++.+       
T Consensus       495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-------  559 (1018)
T KOG2002|consen  495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-------  559 (1018)
T ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-------
Confidence            3456889999999999999999999999998        9999999999998888899999999999999976       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                       +..++.++..+|.++....++..|. .-|+..++
T Consensus       560 -d~~np~arsl~G~~~l~k~~~~~a~-k~f~~i~~  592 (1018)
T KOG2002|consen  560 -DSSNPNARSLLGNLHLKKSEWKPAK-KKFETILK  592 (1018)
T ss_pred             -ccCCcHHHHHHHHHHHhhhhhcccc-cHHHHHHh
Confidence             4566678888999999999999998 86666654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.96  E-value=2.9e-25  Score=252.13  Aligned_cols=436  Identities=13%  Similarity=0.032  Sum_probs=330.1

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004811          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (729)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  294 (729)
                      ..+|...........+....|+ +++|+..|.++...-         +..+.++..+|.++...|++++|+.+|++++.+
T Consensus         9 ~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~---------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~   78 (765)
T PRK10049          9 LKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHM---------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL   78 (765)
T ss_pred             hccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456666666777778888897 999998888887531         334667889999999999999999999999988


Q ss_pred             chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004811          295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQ  374 (729)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  374 (729)
                      .     +..+.    ++..+|.++...|++++|+..+++++..        .|.... +..+|.++...|++++|+..++
T Consensus        79 ~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~  140 (765)
T PRK10049         79 E-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMT  140 (765)
T ss_pred             C-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence            5     44332    4778999999999999999999999998        688888 9999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-----HcCCH-
Q 004811          375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL-----SLSRY-  448 (729)
Q Consensus       375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~-  448 (729)
                      +++++.|...        .++..++.++...+..+.|+..++++.. .... ...........+..++.     ..+++ 
T Consensus       141 ~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~  210 (765)
T PRK10049        141 QALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANL-TPAE-KRDLEADAAAELVRLSFMPTRSEKERYA  210 (765)
T ss_pred             HHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHhhcccccChhHHHH
Confidence            9999987753        4577889999999999999998876542 0000 00000111122222222     22345 


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 004811          449 --DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (729)
Q Consensus       449 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (729)
                        ++|+..++.++....... ...+....+.......+...|++++|+..|+++++.      +...|..+.  ..+|.+
T Consensus       211 ~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~------~~~~P~~a~--~~la~~  281 (765)
T PRK10049        211 IADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAE------GQIIPPWAQ--RWVASA  281 (765)
T ss_pred             HHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCCCHHHH--HHHHHH
Confidence              678888888776643211 112333444444233446779999999999998776      222233333  336889


Q ss_pred             HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------CCCC-ChHH
Q 004811          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI------GERK-SAFF  599 (729)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~-~~~~  599 (729)
                      |...|++++|+.+|++++...+..   ..........++.++...|++++|+.+++++....+..      .... ....
T Consensus       282 yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~  358 (765)
T PRK10049        282 YLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW  358 (765)
T ss_pred             HHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence            999999999999999988643221   11112345667778899999999999999988753210      0001 1123


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++.+        
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------  422 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------  422 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------
Confidence            456778999999999999999999999998        8888899999999999999999999999999987        


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|+...+++.+|.++...|++++|. ..++.+++.+|+
T Consensus       423 ~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd  459 (765)
T PRK10049        423 EPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQ  459 (765)
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence            6888889999999999999999999 999999999998

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=3.4e-25  Score=246.07  Aligned_cols=362  Identities=13%  Similarity=0.028  Sum_probs=279.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (729)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (729)
                      +...+..+...|++++|+..++.++...     +.++.    +++.+|.+....|++++|+..|++++..        +|
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P  107 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAV--------NV  107 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence            4445677888899999999999988775     44443    4788888888999999999999999988        78


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (729)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (729)
                      ....++..+|.++...|++++|+..|++++.+.|..        ..++..++.++...|++++|+..+.+++..   .++
T Consensus       108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~--------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~  176 (656)
T PRK15174        108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN--------SQIFALHLRTLVLMDKELQAISLARTQAQE---VPP  176 (656)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCC
Confidence            888899999999999999999999999999887654        245888899999999999999988866542   222


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .   ...+..++ .+...|++++|+..+++++...       .+........++.++...|++++|+..|++++..    
T Consensus       177 ~---~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~----  241 (656)
T PRK15174        177 R---GDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR----  241 (656)
T ss_pred             C---HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence            2   23333333 4778899999999988877651       1122234456678888999999999999999887    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHH----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                           .|....++..+|.++...|++++    |+..|++++.+.|..       ..++..+|.++...|++++|+.++++
T Consensus       242 -----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~  309 (656)
T PRK15174        242 -----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ  309 (656)
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                 33346778889999999999885    788999998886654       57788899999999999999999999


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      ++.+.        +....++..+|.++...|++++|+..|++++..        +|.....+..+|.++...|++++|+.
T Consensus       310 al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        310 SLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             HHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence            88762        223467788899999999999999999999887        77776667778889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004811          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR  703 (729)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A  703 (729)
                      .|+++++......   .+....+...+...+...+...+.
T Consensus       374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~  410 (656)
T PRK15174        374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER  410 (656)
T ss_pred             HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence            9999988743322   223334555555555555555444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=1.7e-25  Score=248.53  Aligned_cols=336  Identities=13%  Similarity=0.087  Sum_probs=289.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004811          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (729)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (729)
                      ....+..+...|++++|+..++..+..        .|....+++.+|.+....|++++|+..|++++...|...      
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------  110 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------  110 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------
Confidence            445677788999999999999999988        688899999999999999999999999999999987764      


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (729)
Q Consensus       391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (729)
                        .++..+|.++...|++++|+..|++++.+      .|....++..++.++...|++++|+..+++++..        .
T Consensus       111 --~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~  174 (656)
T PRK15174        111 --EDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------V  174 (656)
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------C
Confidence              45899999999999999999999999864      4555678889999999999999999999988776        4


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      |.....+..++ .+...|++++|+..+++++.....        ........++.++...|++++|+..|++++...+..
T Consensus       175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~--------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~  245 (656)
T PRK15174        175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL--------ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG  245 (656)
T ss_pred             CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            55555665554 478899999999999998776211        112234567888999999999999999999875443


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          551 PGQQSTVAGIEAQMGVMYYMLGNYSD----SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (729)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (729)
                             ..++..+|.++...|++++    |+..|++++.+.        +....++..+|.++...|++++|+.+++++
T Consensus       246 -------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        246 -------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             -------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                   5778899999999999986    799999998862        224678999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH
Q 004811          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ  706 (729)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~  706 (729)
                      +..        +|+...++..+|.+|...|++++|+..|++++..        +|.....+..+|.++...|++++|+ .
T Consensus       311 l~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~  373 (656)
T PRK15174        311 LAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-S  373 (656)
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-H
Confidence            998        8888889999999999999999999999999875        5776667777899999999999999 9


Q ss_pred             HHHHHHhhccc
Q 004811          707 SLETLLDANSR  717 (729)
Q Consensus       707 ~l~~al~~~p~  717 (729)
                      .|+++++.+|+
T Consensus       374 ~l~~al~~~P~  384 (656)
T PRK15174        374 VFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHhChh
Confidence            99999999997

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.7e-25  Score=214.32  Aligned_cols=392  Identities=18%  Similarity=0.148  Sum_probs=301.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      +..+-..|.-+++.|+|++|+.+|.+|+++.     ++.|.    .|.+++-||...|+|++.++...+++++       
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epi----FYsNraAcY~~lgd~~~Vied~TkALEl-------  178 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPI----FYSNRAACYESLGDWEKVIEDCTKALEL-------  178 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCch----hhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence            4456678999999999999999999999997     44343    2889999999999999999999999999       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHH------------------HHHHHH---------HhcCCC--CCHHHHHHH
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQ------------------MALDIH---------KDNGSP--ASLEEAADR  395 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~~---------~~~~~~--~~~~~a~~~  395 (729)
                       +|+...+++..+.++..+|++++|+.-..                  +.|...         ..+..+  ++......+
T Consensus       179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy  257 (606)
T KOG0547|consen  179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY  257 (606)
T ss_pred             -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence             89999999999999999999998865432                  111110         001111  000001111


Q ss_pred             HH--------------------H--HHHHHHhC---CHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHHH
Q 004811          396 RL--------------------M--GLICETKG---DHEAALEHLVLASMTMIANDQ-------DAEVASVDCSIGDTYL  443 (729)
Q Consensus       396 ~~--------------------l--g~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~la~~~~  443 (729)
                      +.                    +  +.-+...+   .|..|...+.+..........       ....+.++...|..++
T Consensus       258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f  337 (606)
T KOG0547|consen  258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF  337 (606)
T ss_pred             HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence            10                    0  11111112   455666665555432221111       1344778888999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004811          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (729)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (729)
                      ..|++-.|...|+.++.+        +|.....|..+|.+|....+.++-...|.+|..+         +|....+|+..
T Consensus       338 L~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~dvYyHR  400 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPDVYYHR  400 (606)
T ss_pred             hcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCchhHhH
Confidence            999999999999999998        6777777999999999999999999999999999         55557789999


Q ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 004811          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (729)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (729)
                      |.+++-++++++|+.-|++++.+.|..       +..+..++.+.+++++++++...|+.++..++.        .+.++
T Consensus       401 gQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------~~Evy  465 (606)
T KOG0547|consen  401 GQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------CPEVY  465 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHH
Confidence            999999999999999999999998877       577889999999999999999999999987532        46788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      ...|.++..+++|++|++.|..|+++-...... +- .+..+..-|.+. .-.+++..|+.++++|+++        +|.
T Consensus       466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpk  535 (606)
T KOG0547|consen  466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPK  535 (606)
T ss_pred             HHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------Cch
Confidence            889999999999999999999999983221110 00 222222222222 2348999999999999987        899


Q ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      .-.++..||.+..++|+.++|+ +.|++++.+-.
T Consensus       536 ce~A~~tlaq~~lQ~~~i~eAi-elFEksa~lAr  568 (606)
T KOG0547|consen  536 CEQAYETLAQFELQRGKIDEAI-ELFEKSAQLAR  568 (606)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHH
Confidence            9999999999999999999999 99999887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=3.6e-24  Score=242.51  Aligned_cols=459  Identities=12%  Similarity=0.018  Sum_probs=334.2

Q ss_pred             cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (729)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (729)
                      ..+......|++..++..+..+...+|+...+++.++..++..|+ +++|+.++++|++..         |.....+..+
T Consensus        49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ld---------P~n~~~~~~L  118 (987)
T PRK09782         49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRH---------PGDARLERSL  118 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------cccHHHHHHH
Confidence            344455666888888899999999999999999999999999998 999999999999862         3334444445


Q ss_pred             HHHHHHcCChHHHHHHHHHhcccchhhccccchHH-------------------------------HHHHHHHHHHHHHH
Q 004811          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-------------------------------KFAGHMQLGDTYAM  320 (729)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~  320 (729)
                      +.+    +++++|+..|++++...+..........                               .....+.++.+|..
T Consensus       119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~  194 (987)
T PRK09782        119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY  194 (987)
T ss_pred             HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence            444    8888999999888877532111110000                               01124445889999


Q ss_pred             cCCHHHHHHHHHHHHHHH--------------HH---------HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004811          321 LGQLENSLMCYTTGLEVQ--------------KQ---------VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (729)
Q Consensus       321 ~g~~~~A~~~~~~al~~~--------------~~---------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (729)
                      +|++++|+..+.++++..              ..         ...+.-.....++..++..|...|+.++|...+++.-
T Consensus       195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~  274 (987)
T PRK09782        195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK  274 (987)
T ss_pred             HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            999999999888876541              00         0000001233455567778888888888877765532


Q ss_pred             HHHHhcCCCC----------------------------------------------------------C-----------
Q 004811          378 DIHKDNGSPA----------------------------------------------------------S-----------  388 (729)
Q Consensus       378 ~~~~~~~~~~----------------------------------------------------------~-----------  388 (729)
                      ...+......                                                          .           
T Consensus       275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  354 (987)
T PRK09782        275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA  354 (987)
T ss_pred             ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence            2211100000                                                          0           


Q ss_pred             ------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------HH-------Hh---------
Q 004811          389 ------------------LEEAADRRLMGLICETKGDHEAALEHLVLASM----------TM-------IA---------  424 (729)
Q Consensus       389 ------------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~-------~~---------  424 (729)
                                        +.....+..++......|++++|...|+++..          +.       ..         
T Consensus       355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence                              00012233345555667888888887776643          11       00         


Q ss_pred             ---------------------------------CCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          425 ---------------------------------NDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (729)
Q Consensus       425 ---------------------------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (729)
                                                       .+..|.  ...++..+|.++.. +++.+|+..+.+++..        
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------  505 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------  505 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence                                             011122  55677888888877 7888899988888877        


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .|.. .....+|.++...|++++|+..|++++...      ..    ...+..+|.++...|++++|+.+|++++...+.
T Consensus       506 ~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~------p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~  574 (987)
T PRK09782        506 QPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHD------MS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG  574 (987)
T ss_pred             CCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccC------CC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence            4543 346667777789999999999999875541      11    123678899999999999999999999886433


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .       ...+..++..+...|++++|+..|++++++.       + . ..++..+|.++.+.|++++|+..|++++.+
T Consensus       575 ~-------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-------P-~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l  638 (987)
T PRK09782        575 D-------NALYWWLHAQRYIPGQPELALNDLTRSLNIA-------P-S-ANAYVARATIYRQRHNVPAAVSDLRAALEL  638 (987)
T ss_pred             c-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------C-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            2       2444456666667799999999999999862       2 2 568899999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE  709 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  709 (729)
                              +|+...++.++|.++...|++++|+..|++++++        +|+...+++++|.++...|++++|. ..|+
T Consensus       639 --------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~  701 (987)
T PRK09782        639 --------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYAR  701 (987)
T ss_pred             --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence                    8999999999999999999999999999999987        6888999999999999999999999 9999


Q ss_pred             HHHhhccc
Q 004811          710 TLLDANSR  717 (729)
Q Consensus       710 ~al~~~p~  717 (729)
                      ++++++|+
T Consensus       702 ~Al~l~P~  709 (987)
T PRK09782        702 LVIDDIDN  709 (987)
T ss_pred             HHHhcCCC
Confidence            99999998

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.94  E-value=1.2e-23  Score=239.07  Aligned_cols=414  Identities=13%  Similarity=-0.015  Sum_probs=314.2

Q ss_pred             cccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH
Q 004811          198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS  277 (729)
Q Consensus       198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~  277 (729)
                      .-.|+...+++.+......+|..+.++..+|..+...|+ +++|+.+|++++...         |....++..++.++..
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~   95 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE---------PQNDDYQRGLILTLAD   95 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence            345555566666677776788889999999999999997 999999999999863         3335567889999999


Q ss_pred             cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004811          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (729)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (729)
                      .|++++|+..++++++..     ++++    . +..+|.++...|++++|+..++++++.        .|....++..++
T Consensus        96 ~g~~~eA~~~l~~~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la  157 (765)
T PRK10049         96 AGQYDEALVKAKQLVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYV  157 (765)
T ss_pred             CCCHHHHHHHHHHHHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence            999999999999999875     3332    3 778999999999999999999999999        788899999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----HHhCCH---HHHHHHHHHHHHHHHhCCC-C
Q 004811          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-----ETKGDH---EAALEHLVLASMTMIANDQ-D  428 (729)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~-----~~~g~~---~~A~~~~~~al~~~~~~~~-~  428 (729)
                      .++...+..++|+..++++.. .|....   .........+..++     ...+++   ++|+..++.++........ .
T Consensus       158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~  233 (765)
T PRK10049        158 QALRNNRLSAPALGAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT  233 (765)
T ss_pred             HHHHHCCChHHHHHHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            999999999999999987664 222100   00000111122222     222345   7788888887765433322 2


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      +....+.......+...|++++|+..|++++..     ++..|..+.  ..+|.+|...|++++|+.+|++++.....  
T Consensus       234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~--  304 (765)
T PRK10049        234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPET--  304 (765)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCC--
Confidence            334444444233446779999999999998775     111244433  33689999999999999999998865211  


Q ss_pred             CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC-------CCC-CcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP-------GQQ-STVAGIEAQMGVMYYMLGNYSDSYDS  580 (729)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~-~~~~~~~~~la~~~~~~g~~~~A~~~  580 (729)
                         ...........++.++...|++++|+.+++++....|...       ..+ .....++..++.++...|++++|+..
T Consensus       305 ---~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~  381 (765)
T PRK10049        305 ---IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR  381 (765)
T ss_pred             ---CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence               1011134566777888999999999999999988754211       111 12345677899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004811          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (729)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (729)
                      +++++...        +....++..+|.++...|++++|+..+++++.+        +|+...+++.+|.++...|++++
T Consensus       382 l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~  445 (765)
T PRK10049        382 ARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQ  445 (765)
T ss_pred             HHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence            99998762        223578999999999999999999999999999        89999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 004811          661 AIEILEFVVGI  671 (729)
Q Consensus       661 A~~~~~~al~~  671 (729)
                      |...++++++.
T Consensus       446 A~~~~~~ll~~  456 (765)
T PRK10049        446 MDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=9.4e-24  Score=203.89  Aligned_cols=422  Identities=14%  Similarity=0.105  Sum_probs=291.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      ..+++.++..|-... .+.+|+..|+-.++       ..--|+....-.++|.+|++..+|.+|+.+|+.++...+..  
T Consensus       201 fsvl~nlaqqy~~nd-m~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi--  270 (840)
T KOG2003|consen  201 FSVLFNLAQQYEAND-MTAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI--  270 (840)
T ss_pred             HHHHHHHHHHhhhhH-HHHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc--
Confidence            456778887665554 36666666655443       22224445556789999999999999999999999765322  


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (729)
                        .....+.++.++|..+.+.|+|++|+..|+.+++.        .|... +-++|..+++..|+-++-.+.|++.+.+-
T Consensus       271 --nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip  339 (840)
T KOG2003|consen  271 --NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIP  339 (840)
T ss_pred             --chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence              22356777999999999999999999999999988        46554 45667778888899888888888887653


Q ss_pred             HhcCCC---------CCHHHH-----------------------------------------------------------
Q 004811          381 KDNGSP---------ASLEEA-----------------------------------------------------------  392 (729)
Q Consensus       381 ~~~~~~---------~~~~~a-----------------------------------------------------------  392 (729)
                      ....+.         +....-                                                           
T Consensus       340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~  419 (840)
T KOG2003|consen  340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI  419 (840)
T ss_pred             CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence            221111         000000                                                           


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENH  470 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~  470 (729)
                      ..-.+.+..+.+.|+++.|++.+.-.    ... +......+-.+|..+++.+|  ++.+|..+...++.+        +
T Consensus       420 dlei~ka~~~lk~~d~~~aieilkv~----~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------d  486 (840)
T KOG2003|consen  420 DLEINKAGELLKNGDIEGAIEILKVF----EKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------D  486 (840)
T ss_pred             hhhhhHHHHHHhccCHHHHHHHHHHH----Hhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------c
Confidence            00011233455667777777665322    111 22222233344444444432  566666666666665        5


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      ...+.++.+.|.+-+..|++++|.+.|++++.-         +.....+++++|..+..+|+.++|+.+|-+.-.+....
T Consensus       487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn  557 (840)
T KOG2003|consen  487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN  557 (840)
T ss_pred             ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence            556667777777777888888888888888765         44456778888888888888888888888777776655


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (729)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (729)
                             +.++..++.+|..+.+..+|++++.++..+.+        ..+.++..||.+|-+.|+-.+|..++-..... 
T Consensus       558 -------~evl~qianiye~led~aqaie~~~q~~slip--------~dp~ilskl~dlydqegdksqafq~~ydsyry-  621 (840)
T KOG2003|consen  558 -------AEVLVQIANIYELLEDPAQAIELLMQANSLIP--------NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-  621 (840)
T ss_pred             -------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--------CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-
Confidence                   57777888888888888888888877766531        23456777888888888888888777776666 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (729)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (729)
                             .|-..++...||..|....-+++|+.+|+++.-+        .|........++.++.+.|+|.+|. ..|+.
T Consensus       622 -------fp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~-d~yk~  685 (840)
T KOG2003|consen  622 -------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAF-DLYKD  685 (840)
T ss_pred             -------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHH-HHHHH
Confidence                   6777777777888888777788888888877654        5777777777788888888888888 88877


Q ss_pred             HHhhccc
Q 004811          711 LLDANSR  717 (729)
Q Consensus       711 al~~~p~  717 (729)
                      .....|+
T Consensus       686 ~hrkfpe  692 (840)
T KOG2003|consen  686 IHRKFPE  692 (840)
T ss_pred             HHHhCcc
Confidence            7777775

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.91  E-value=2.4e-20  Score=207.37  Aligned_cols=438  Identities=12%  Similarity=-0.002  Sum_probs=324.4

Q ss_pred             cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004811          212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS  291 (729)
Q Consensus       212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  291 (729)
                      -.....|..+...+..+...++.|+ ++.|+..|+++++..         |........++.++...|++++|+.+++++
T Consensus        25 ~~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~eka   94 (822)
T PRK14574         25 SGFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYERY   94 (822)
T ss_pred             cccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence            3445667788899999999999997 999999999999864         222212226777888889999999999999


Q ss_pred             cccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004811          292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (729)
Q Consensus       292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (729)
                      +.-.     +..    ...+..+|.++...|++++|+..|+++++.        +|....++..++.++...++.++|+.
T Consensus        95 ~~p~-----n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574         95 QSSM-----NIS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             ccCC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            8321     111    223556688999999999999999999998        78888888899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (729)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (729)
                      .+++++...+...         .+..++.++...++..+|++.+++++..      .|....++..+..++...|-...|
T Consensus       158 ~l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a  222 (822)
T PRK14574        158 QATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPA  222 (822)
T ss_pred             HHHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHH
Confidence            9999988876531         2344455555577777799999988754      222223333333333333332222


Q ss_pred             HH-----------------------------------------HHHHHHHHHHHhcC------CCChhHHHHHHHHHHHH
Q 004811          452 GF-----------------------------------------AYQKALTAFKTNKG------ENHPAVASVFVRLADMY  484 (729)
Q Consensus       452 ~~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~~~  484 (729)
                      .+                                         ..++++........      +.++....+....-.++
T Consensus       223 ~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL  302 (822)
T PRK14574        223 LRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL  302 (822)
T ss_pred             HHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence            22                                         23334433333321      12334455666667778


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004811          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (729)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (729)
                      ...|++.+++..|+.....      +..-|.  .+...+|..|...++.++|+.+|.+++.-.+........ ......|
T Consensus       303 ~~r~r~~~vi~~y~~l~~~------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L  373 (822)
T PRK14574        303 LVRHQTADLIKEYEAMEAE------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDL  373 (822)
T ss_pred             HHhhhHHHHHHHHHHhhhc------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHH
Confidence            8889999999999876655      222233  356778999999999999999999987755322111111 2223577


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH-h---C---CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          565 GVMYYMLGNYSDSYDSFKNAISKLRA-I---G---ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~-~---~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      ...|...++|++|..++++..+..+- .   +   ....+........++.++...|++.+|.+.+++.+..        
T Consensus       374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------  445 (822)
T PRK14574        374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------  445 (822)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            88899999999999999998873220 0   0   1223345678888899999999999999999999988        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .|.+..++..+|.++...|.+.+|...++.+..+        +|+...+...++.++..+|++++|. .....+++..|+
T Consensus       446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe  516 (822)
T PRK14574        446 APANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQME-LLTDDVISRSPE  516 (822)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCC
Confidence            8999999999999999999999999999888765        7999999999999999999999999 999999999998

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.91  E-value=1.9e-21  Score=220.47  Aligned_cols=361  Identities=13%  Similarity=0.001  Sum_probs=287.0

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCC---HHHHH----------
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSL----------  328 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~----------  328 (729)
                      |.....+..++......|++++|..+|+++......    ...  .......++.+|...+.   ..+++          
T Consensus       373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  446 (987)
T PRK09782        373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD----ARL--SQTLMARLASLLESHPYLATPAKVAILSKPLPLAE  446 (987)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc----ccc--CHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence            334667888999999999999999999999985311    111  11224477777776655   33332          


Q ss_pred             ------------HHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004811          329 ------------MCYTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD  394 (729)
Q Consensus       329 ------------~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~  394 (729)
                                  ..+..+...    ++ ..|.  ...++..+|.++.. +++.+|+..+.+++...|..         ..
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---------~~  511 (987)
T PRK09782        447 QRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---------WQ  511 (987)
T ss_pred             hHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------HH
Confidence                        222222222    22 2456  88899999999987 89999999999999887642         23


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (729)
Q Consensus       395 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (729)
                      ...+|.++...|++++|+..|+++...      .+. ...+..+|.++...|++++|+.+|++++..        .|...
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~  576 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDN  576 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccH
Confidence            666778888999999999999986431      111 234678899999999999999999999987        56666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      ..+..++..+...|++++|+..|++++++         .|. ...+.++|.++...|++++|+..|++++.+.|+.    
T Consensus       577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~----  642 (987)
T PRK09782        577 ALYWWLHAQRYIPGQPELALNDLTRSLNI---------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN----  642 (987)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----
Confidence            66667777777789999999999999988         333 5688999999999999999999999999998766    


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (729)
                         ..++.++|.++...|++++|+.+|++++++.        +....++.++|.++...|++++|+.+|++++++     
T Consensus       643 ---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l-----  706 (987)
T PRK09782        643 ---SNYQAALGYALWDSGDIAQSREMLERAHKGL--------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD-----  706 (987)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence               5788999999999999999999999999872        234678999999999999999999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCH
Q 004811          635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV  700 (729)
Q Consensus       635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~  700 (729)
                         .|+...+....|.+.....+++.|.+.+.++..+        +|... +....|.++...+++
T Consensus       707 ---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~~~~  760 (987)
T PRK09782        707 ---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTANNNV  760 (987)
T ss_pred             ---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhcccc
Confidence               8999999999999999999999999999998865        34444 666777777776665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.6e-23  Score=208.29  Aligned_cols=303  Identities=16%  Similarity=0.118  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          352 TCRYLAEAHVQ--ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       352 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      .+..+|..|..  +-+..+|+..|.+.-.....        ...++..+|..|+.+++|++|..+|+.+.++.      |
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~n--------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~------p  384 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYN--------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIE------P  384 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------c
Confidence            34444444433  23567888888873222222        23678899999999999999999998775432      1


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ......-....+++.+.+--+--.+.+..++.        +|..+..|..+|.+|..+++++.|+++|++|+++      
T Consensus       385 ~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------  450 (638)
T KOG1126|consen  385 YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL------  450 (638)
T ss_pred             ccccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------
Confidence            11111112223333333322222222333333        7888899999999999999999999999999999      


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                         +|..+.+|..+|.=+.....+|.|..+|+.|+.+.+++       ..+|+.+|.+|.++++++.|.-+|++|+++  
T Consensus       451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--  518 (638)
T KOG1126|consen  451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--  518 (638)
T ss_pred             ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhhcC--
Confidence               66678899999999999999999999999999988877       589999999999999999999999999987  


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                            .+....++..+|.++.++|+.++|+.+|++|+.+        +|......+..|.++..++++++|+..+++..
T Consensus       519 ------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk  584 (638)
T KOG1126|consen  519 ------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELK  584 (638)
T ss_pred             ------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence                  2335677888999999999999999999999999        88888899999999999999999999999998


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++        -|+...+++.+|.+|.+.|+.+.|+ ..|--|++++|.
T Consensus       585 ~~--------vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpk  623 (638)
T KOG1126|consen  585 EL--------VPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPK  623 (638)
T ss_pred             Hh--------CcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCc
Confidence            87        5899999999999999999999999 999999999998

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.8e-21  Score=193.90  Aligned_cols=412  Identities=20%  Similarity=0.234  Sum_probs=287.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcccc
Q 004811          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (729)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (729)
                      .+...|+..+..|+ |+.|+.+|..|+.+-         |.....|.+...+|..+|+|++|+.--.+.+++.     +.
T Consensus         4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~   68 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGD-FETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD   68 (539)
T ss_pred             HHHHHHHhhccccc-HHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence            45678999999998 999999999999873         2346678899999999999999999999999986     33


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC-----------------
Q 004811          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ-----------------  365 (729)
Q Consensus       303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  365 (729)
                          ....|..+|..+..+|+|++|+..|.+.|+.        +|.....+..|+.++.....                 
T Consensus        69 ----w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~  136 (539)
T KOG0548|consen   69 ----WAKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL  136 (539)
T ss_pred             ----hhhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence                3346999999999999999999999999999        78888888888888722210                 


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------HhC
Q 004811          366 ----FSEAQKFCQMALDIHKDNGSPASL--EEAADRRLMGLICETKGDHEAALEHLVLASMTM--------------IAN  425 (729)
Q Consensus       366 ----~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------~~~  425 (729)
                          +-.....|...++..+.+...-..  ........+|.+.   |....  ..+.......              ...
T Consensus       137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~---~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~  211 (539)
T KOG0548|consen  137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK---GVDEL--LFYASGIEILASMAEPCKQEHNGFPII  211 (539)
T ss_pred             hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh---cCccc--cccccccccCCCCCCcccccCCCCCcc
Confidence                111122233333333222110000  0000001111110   00000  0000000000              000


Q ss_pred             CCC------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          426 DQD------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (729)
Q Consensus       426 ~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (729)
                      .+.      ...+.-...+|...+...++..|+++|..++++        + .....+.+.+.+|+..|.+.+.+..+..
T Consensus       212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~  282 (539)
T KOG0548|consen  212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEK  282 (539)
T ss_pred             chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence            000      113445678999999999999999999999999        4 5667788999999999999999999999


Q ss_pred             HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (729)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (729)
                      +++.....  ..+...++.++..+|..|..+++++.|+.+|++++.....               ..+.......++++.
T Consensus       283 a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k  345 (539)
T KOG0548|consen  283 AVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALK  345 (539)
T ss_pred             HHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHH
Confidence            88874332  1112235566667888999999999999999998876543               233333444444444


Q ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004811          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD  659 (729)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  659 (729)
                      ..+...-+       . +..+.-...-|..++..|+|..|+.+|.+|+..        +|+....|.+.|.||..+|.+.
T Consensus       346 ~~e~~a~~-------~-pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~  409 (539)
T KOG0548|consen  346 EAERKAYI-------N-PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYP  409 (539)
T ss_pred             HHHHHHhh-------C-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHH
Confidence            44433222       1 112444455588888888888888888888887        7888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .|+...+.++++        +|.+..+|.+-|.++..+.+|++|. +.|+++++.+|+
T Consensus       410 ~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~  458 (539)
T KOG0548|consen  410 EALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPS  458 (539)
T ss_pred             HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCch
Confidence            888888888876        7888888888888888888888888 888888888887

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.91  E-value=2.5e-22  Score=194.09  Aligned_cols=409  Identities=16%  Similarity=0.168  Sum_probs=311.7

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004811          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (729)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  294 (729)
                      ...|+....-..+|+.+++... |.+|+.+|.-|+...+.+.    ......++.++|..+.+.|+|+.|+..|+.+++.
T Consensus       231 kmf~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~  305 (840)
T KOG2003|consen  231 KMFPNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE  305 (840)
T ss_pred             cccCCCceeeeeecceeeehhh-HHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh
Confidence            4457777777888999998875 9999999999998765442    1334677888999999999999999999888876


Q ss_pred             chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh------CCCCc---------------------
Q 004811          295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL------GETDP---------------------  347 (729)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~---------------------  347 (729)
                      .          ..+.+-++|..|++..|+-++-.+.|.+.+.+-..+-      ..++|                     
T Consensus       306 ~----------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~  375 (840)
T KOG2003|consen  306 A----------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN  375 (840)
T ss_pred             C----------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence            4          1233456677777777777777777776654411000      00011                     


Q ss_pred             ---------------------h--------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811          348 ---------------------R--------------------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (729)
Q Consensus       348 ---------------------~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (729)
                                           +                    ....-.+.+..|.+.|+++.|++.++-.-....     
T Consensus       376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn-----  450 (840)
T KOG2003|consen  376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN-----  450 (840)
T ss_pred             hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc-----
Confidence                                 0                    001112335567778888888877643322211     


Q ss_pred             CCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          387 ASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT  464 (729)
Q Consensus       387 ~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  464 (729)
                        .....+-.+|..+++.+|  ++..|..+...++.+      +...+.++.+.|.+.+..|++++|.+.|++++.-   
T Consensus       451 --k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---  519 (840)
T KOG2003|consen  451 --KTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---  519 (840)
T ss_pred             --hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---
Confidence              112234556666666644  788888888887643      3444567888999999999999999999999985   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                           +.....+++++|..+..+|+.++|+.+|-+.-.+...         .+.++..++.+|..+.+..+|++++.++.
T Consensus       520 -----dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~qianiye~led~aqaie~~~q~~  585 (840)
T KOG2003|consen  520 -----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLVQIANIYELLEDPAQAIELLMQAN  585 (840)
T ss_pred             -----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence                 7778899999999999999999999999998888544         47889999999999999999999999999


Q ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE  624 (729)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  624 (729)
                      .+.|..       ..++..||.+|-..|+-.+|..++-.....++        ....+...||..|....-+++|+.+|+
T Consensus       586 slip~d-------p~ilskl~dlydqegdksqafq~~ydsyryfp--------~nie~iewl~ayyidtqf~ekai~y~e  650 (840)
T KOG2003|consen  586 SLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFP--------CNIETIEWLAAYYIDTQFSEKAINYFE  650 (840)
T ss_pred             ccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhcccccC--------cchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            888766       46788999999999999999998877665432        234566778999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                      +|.-+        .|........++.|+.+.|+|.+|.+.|+..-.-        .|...+++.-|.++.-.+|-
T Consensus       651 kaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  651 KAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccc
Confidence            99888        7888888889999999999999999999977654        48888888888888777664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=8.2e-21  Score=201.56  Aligned_cols=314  Identities=15%  Similarity=0.143  Sum_probs=250.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      ....+.+|..+...|++++|+..|+++++..+..        ..++..+|.++...|++++|+..+++++..  ......
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~  104 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTRE  104 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHH
Confidence            3455667888899999999999999999986543        356899999999999999999999987642  011112


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ....++..+|.+|...|++++|+.+|+++++.        .+....++..++.++...|++++|+..+++++.....   
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---  173 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---  173 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence            33467899999999999999999999999876        5667788999999999999999999999998876322   


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                       .........+..+|.++...|++++|+.+|+++++..+..       ..++..+|.++...|++++|+.+|++++... 
T Consensus       174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-  244 (389)
T PRK11788        174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD-  244 (389)
T ss_pred             -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence             1122345567789999999999999999999999876543       4577889999999999999999999998752 


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                            +.....++..++.+|...|++++|+.++++++..        +|+.. .+..++.++...|++++|+.++++++
T Consensus       245 ------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l  309 (389)
T PRK11788        245 ------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQL  309 (389)
T ss_pred             ------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  2223567788999999999999999999999987        56554 44889999999999999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHHHH----hhccc
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLL----DANSR  717 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al----~~~p~  717 (729)
                      +.        +|+.......++..+..  .|+..+++ ..+++.+    ..+|+
T Consensus       310 ~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~-~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        310 RR--------HPSLRGFHRLLDYHLAEAEEGRAKESL-LLLRDLVGEQLKRKPR  354 (389)
T ss_pred             Hh--------CcCHHHHHHHHHHhhhccCCccchhHH-HHHHHHHHHHHhCCCC
Confidence            76        57766544444443322  45788887 7666655    45555

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.91  E-value=4.8e-22  Score=190.14  Aligned_cols=330  Identities=15%  Similarity=0.143  Sum_probs=278.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (729)
                      .-|.-+++.|++...+.+|+.|++.-     .++......+|..||.+|+.+++|++|+++...-+.+.+.+. . ....
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-d-klGE   94 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-D-KLGE   94 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-c-hhcc
Confidence            34778899999999999999999874     555555566799999999999999999999988877765542 1 2334


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC--------------------HH
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------------HE  409 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------------~~  409 (729)
                      +.+.-+||.++...|.|++|+.++.+-+.+.+..++.  ...+.+++++|.+|...|+                    ++
T Consensus        95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~  172 (639)
T KOG1130|consen   95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE  172 (639)
T ss_pred             ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence            5677899999999999999999999999999988754  6678899999999998875                    56


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811          410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK  489 (729)
Q Consensus       410 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  489 (729)
                      .|.++|..-+.+....++......++-+||..|+-+|+|+.|+.+.+.-+.+.++.+  +......++.++|.++...|+
T Consensus       173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~  250 (639)
T KOG1130|consen  173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGN  250 (639)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcc
Confidence            788888888888888888888899999999999999999999999999999988876  345567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004811          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (729)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (729)
                      ++.|+++|+..+.+..++.   +....+...+.||..|....++++|+.|+.+-+.+.... ++......+++.||..|.
T Consensus       251 fe~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~  326 (639)
T KOG1130|consen  251 FELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFN  326 (639)
T ss_pred             cHhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH
Confidence            9999999999999887752   234457788899999999999999999999999998876 666666788999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004811          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (729)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  616 (729)
                      ..|..++|+.+.++.+++..++.+....  ..+..++.......|..
T Consensus       327 alg~h~kAl~fae~hl~~s~ev~D~sge--lTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  327 ALGEHRKALYFAELHLRSSLEVNDTSGE--LTARDNLSDLILELGQE  371 (639)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhCCcchh--hhhhhhhHHHHHHhCCC
Confidence            9999999999999999999888776533  23445566666666643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.5e-20  Score=181.51  Aligned_cols=375  Identities=13%  Similarity=0.082  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      ...++..|.++...|....|+..|..++...         +..+.+|..|+.+....       ........-     ..
T Consensus       164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~~-------e~~~~l~~~-----l~  222 (559)
T KOG1155|consen  164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY---------PWFWSAWLELSELITDI-------EILSILVVG-----LP  222 (559)
T ss_pred             hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC---------CcchHHHHHHHHhhchH-------HHHHHHHhc-----Cc
Confidence            4456667777777777777777777776543         12233455555443221       111111110     00


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  423 (729)
                       .......-+.++.++....+.++++.-++....+ .+..        ...-...|.+.....++++|+..|+...+   
T Consensus       223 -~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~--------~~i~~~~A~~~y~~rDfD~a~s~Feei~k---  290 (559)
T KOG1155|consen  223 -SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNS--------MYIKTQIAAASYNQRDFDQAESVFEEIRK---  290 (559)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHh---
Confidence             0123334455666777777777777777666655 2222        23456678888899999999999987653   


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                         ++|-...-+-....+++-..+-.+-.-..+.+..+        +...+.+...+|+.|...++.++|+.+|++|+++
T Consensus       291 ---nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL  359 (559)
T KOG1155|consen  291 ---NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL  359 (559)
T ss_pred             ---cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence               13322222223334444444333322333444444        4555667788899999999999999999999999


Q ss_pred             HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                               +|....+|..+|.-|..+.+...|+..|++|+++.|..       ..+|+.||.+|.-++-+.=|+-+|++
T Consensus       360 ---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  360 ---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             ---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence                     66678899999999999999999999999999998877       48999999999999999999999999


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      |+.+.        +.....|..||.||.+.++.++|+.+|.+|+..        ......++..||.+|.++++.++|..
T Consensus       424 A~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  424 ALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHH
Confidence            99862        334689999999999999999999999999987        34455689999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|++.++.. ..-|...|....+...||..+.+.+++++|. .+...++.-++.
T Consensus       488 ~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~~e  539 (559)
T KOG1155|consen  488 YYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGETE  539 (559)
T ss_pred             HHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCCch
Confidence            999999876 4556778888999999999999999999998 888777766544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.4e-20  Score=186.43  Aligned_cols=430  Identities=14%  Similarity=0.116  Sum_probs=312.9

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc------
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI------  294 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  294 (729)
                      +.-.+.+|++++..++ |..|......- .+      .   .....+.+..+.++....+|++|..++.+.-..      
T Consensus        49 p~d~~~~aq~l~~~~~-y~ra~~lit~~-~l------e---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y  117 (611)
T KOG1173|consen   49 PADIYWLAQVLYLGRQ-YERAAHLITTY-KL------E---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY  117 (611)
T ss_pred             hHHHHHHHHHHHhhhH-HHHHHHHHHHh-hh------h---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence            3455678888988887 65555443322 11      1   123567888899999999999999998843110      


Q ss_pred             chhh---------ccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-
Q 004811          295 PVIE---------EGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA-  363 (729)
Q Consensus       295 ~~~~---------~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-  363 (729)
                      ....         .+... .......++..|.+|..+.++++|...|.+|+..        ++...++...+-..+... 
T Consensus       118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~~~lvs~~mlt~  189 (611)
T KOG1173|consen  118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAFEKLVSAHMLTA  189 (611)
T ss_pred             cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHhcch
Confidence            0000         00000 1122345777899999999999999999999877        455444444333222211 


Q ss_pred             ----------------cCHHHHHHHHHHHHH-HHHhcCC----C-----CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004811          364 ----------------LQFSEAQKFCQMALD-IHKDNGS----P-----ASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (729)
Q Consensus       364 ----------------g~~~~A~~~~~~al~-~~~~~~~----~-----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  417 (729)
                                      +...+-++.+-++.. .......    +     ........+...+..++..++|.+..+....
T Consensus       190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~  269 (611)
T KOG1173|consen  190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEE  269 (611)
T ss_pred             hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHH
Confidence                            111111111111110 0000000    0     0011134566678888999999999999887


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (729)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (729)
                      .+..   .+-++  ...-..+| ++...|+..+-...-.+.++.        .|..+..|+.+|..|...|++.+|.++|
T Consensus       270 lle~---dpfh~--~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~--------yP~~a~sW~aVg~YYl~i~k~seARry~  335 (611)
T KOG1173|consen  270 LLEK---DPFHL--PCLPLHIA-CLYELGKSNKLFLLSHKLVDL--------YPSKALSWFAVGCYYLMIGKYSEARRYF  335 (611)
T ss_pred             HHhh---CCCCc--chHHHHHH-HHHHhcccchHHHHHHHHHHh--------CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence            7653   22222  22334556 778888876655555555555        7999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (729)
                      -++..+         ++....+|...|..+...|..++|+..|..|-++.+...       .-...+|.-|...+++..|
T Consensus       336 SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-------lP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  336 SKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-------LPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-------chHHHHHHHHHHhccHHHH
Confidence            999988         566788999999999999999999999999999987652       2235689999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (729)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  657 (729)
                      ..+|.+|+.+.+        ..+.++..+|.+.+..+.|.+|..+|+.++...+..... .+.....+.+||.+|.+++.
T Consensus       400 e~Ff~~A~ai~P--------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  400 EKFFKQALAIAP--------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             HHHHHHHHhcCC--------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhh
Confidence            999999999843        245789999999999999999999999999776665443 34456688999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +++|+.+|++++.+        .|..+.++..+|.+|..+|+++.|+ .+|.++|.++|+
T Consensus       471 ~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~  521 (611)
T KOG1173|consen  471 YEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPD  521 (611)
T ss_pred             HHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCc
Confidence            99999999999987        6888999999999999999999999 999999999997

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-21  Score=187.33  Aligned_cols=330  Identities=17%  Similarity=0.186  Sum_probs=277.9

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004811          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (729)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (729)
                      |.-+++.|++...+.+|+.|++......    .....+|..||.+|+.+++|++|+++...-+.+.+..++....+...-
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg   99 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG   99 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence            5567889999999999999998765443    334567999999999999999999998888888888888888888889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 004811          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK--------------------LRESKSY  496 (729)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~  496 (729)
                      +||.++-.+|.|++|+.++.+-+.+.++.+  +......+++++|.+|...|+                    ++.|.++
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f  177 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF  177 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence            999999999999999999999999998886  356678899999999998764                    3456677


Q ss_pred             HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Q 004811          497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD  576 (729)
Q Consensus       497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  576 (729)
                      |..-+++.++.   .+......++-+||..|+.+|+|+.|+...+.-+.+.... |+....-.++.++|.++.-.|+++.
T Consensus       178 y~eNL~l~~~l---gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~  253 (639)
T KOG1130|consen  178 YMENLELSEKL---GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFEL  253 (639)
T ss_pred             HHHHHHHHHHh---hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHh
Confidence            77777776663   2344456788999999999999999999999999998876 7777777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811          577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (729)
Q Consensus       577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (729)
                      |+++|+..+.+..++++..  ..+...+.||..|....++++|+.|+++-+.+.+.+..  ......+++.||..|...|
T Consensus       254 A~ehYK~tl~LAielg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg  329 (639)
T KOG1130|consen  254 AIEHYKLTLNLAIELGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALG  329 (639)
T ss_pred             HHHHHHHHHHHHHHhcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhh
Confidence            9999999999999988764  45778889999999999999999999999999888755  4566779999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811          657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (729)
Q Consensus       657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (729)
                      ..++|+.+.++.+++..++..+.  ....+..+|..+....|..+-
T Consensus       330 ~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  330 EHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCcc
Confidence            99999999999999887764322  245566777777777776554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=1.8e-20  Score=198.95  Aligned_cols=308  Identities=14%  Similarity=0.107  Sum_probs=248.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004811          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (729)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (729)
                      ..+.+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+..+++++...    .....
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~  104 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE  104 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence            3667789999999999999999999998        68888999999999999999999999999888632    11112


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (729)
Q Consensus       390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (729)
                      ....++..+|.+|...|++++|+.+|.+++..      .+....++..++.++...|++++|+..+++++.....   ..
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~  175 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL  175 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence            23467899999999999999999999988642      4455678889999999999999999999998875211   01


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .......+..+|.++...|++++|+.+|+++++..         +....++..+|.++...|++++|+.++++++...+.
T Consensus       176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD---------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            11234567789999999999999999999999872         234567889999999999999999999999986443


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .      ...++..++.+|...|++++|+..+++++...    + +   . ..+..++.++...|++++|+.+|+++++.
T Consensus       247 ~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-~---~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        247 Y------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY----P-G---A-DLLLALAQLLEEQEGPEAAQALLREQLRR  311 (389)
T ss_pred             h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-C---c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            2      23567789999999999999999999988762    1 1   1 23478899999999999999999999998


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVG  670 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  670 (729)
                              .|+.......++..+..  .|+..+|+..+++.++
T Consensus       312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence                    78776544444443322  5689999999998885

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.1e-19  Score=177.03  Aligned_cols=374  Identities=18%  Similarity=0.136  Sum_probs=285.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      .+.-.++..|.++...|. ..+|+..+..++..+         |....+|..|+.+.-.       ++.......-.   
T Consensus       162 ~D~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~-------~e~~~~l~~~l---  221 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGL-LSLAIDSFVEVVNRY---------PWFWSAWLELSELITD-------IEILSILVVGL---  221 (559)
T ss_pred             chhHHHHHHHHHHHhhch-HHHHHHHHHHHHhcC---------CcchHHHHHHHHhhch-------HHHHHHHHhcC---
Confidence            346677888998888885 899999999888654         5557777777666422       22222211110   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (729)
                        +.+  ..+..-+.++.++....+.++++.-++......       -|.....-...|.+...+.++++|+..|+..++
T Consensus       222 --~~~--~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k  290 (559)
T KOG1155|consen  222 --PSD--MHWMKKFFLKKAYQELHQHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK  290 (559)
T ss_pred             --ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence              110  122334567888888888888888877766651       355566667788899999999999999999887


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (729)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (729)
                      ..|-..+.        +-....+++-..+-. .+.++.+  .....   +.....+.+.+|..|...++.++|+.+|++|
T Consensus       291 nDPYRl~d--------mdlySN~LYv~~~~s-kLs~LA~--~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA  356 (559)
T KOG1155|consen  291 NDPYRLDD--------MDLYSNVLYVKNDKS-KLSYLAQ--NVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRA  356 (559)
T ss_pred             cCCCcchh--------HHHHhHHHHHHhhhH-HHHHHHH--HHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHH
Confidence            65433322        233334443333322 2222211  11111   2222345677899999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHH
Q 004811          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (729)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (729)
                      +++        +|....+|..+|.-|..+.+...|+..|++|+++         .|....+|+.||+.|..++-..=|+-
T Consensus       357 LkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLy  419 (559)
T KOG1155|consen  357 LKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALY  419 (559)
T ss_pred             Hhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHH
Confidence            999        8999999999999999999999999999999999         55567899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004811          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (729)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (729)
                      +|++|+...|..       ..+|..||.+|.+.++.++|+++|.+++..-        .....++..||.+|.++++..+
T Consensus       420 YfqkA~~~kPnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  420 YFQKALELKPND-------SRLWVALGECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHHHhcCCCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHH
Confidence            999999987766       5789999999999999999999999999862        1246789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                      |..+|++.++.... .+...+....+...||..+.+.+++++|..+..+++.
T Consensus       485 Aa~~yek~v~~~~~-eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  485 AAQYYEKYVEVSEL-EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            99999999997633 3334677888888899999999999999999888874

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.7e-21  Score=197.43  Aligned_cols=300  Identities=17%  Similarity=0.174  Sum_probs=247.5

Q ss_pred             HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811          310 GHMQLGDTYA--MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (729)
Q Consensus       310 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (729)
                      .+..+|..|.  .+-+..+|+..|.+.-..        .+...+++..+|..|+.+++|++|..+|+.+-++.|-..+. 
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~-  389 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG-  389 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-
Confidence            3555555554  344567888888883333        57777999999999999999999999999998877655432 


Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (729)
                             .-....+++.+.+ +-++.++.+-+     ...++.....|+.+|.||..+++++.|+++|++|+++      
T Consensus       390 -------meiyST~LWHLq~-~v~Ls~Laq~L-----i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------  450 (638)
T KOG1126|consen  390 -------MEIYSTTLWHLQD-EVALSYLAQDL-----IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL------  450 (638)
T ss_pred             -------hhHHHHHHHHHHh-hHHHHHHHHHH-----HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------
Confidence                   2222333333322 22333333222     2235556689999999999999999999999999999      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                        +|..+.+|..+|.=+....+++.|..+|+.|+.+         .+....+|+.||.+|.++++++.|.-+|++|+++.
T Consensus       451 --dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN  519 (638)
T KOG1126|consen  451 --DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN  519 (638)
T ss_pred             --CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence              8999999999999999999999999999999998         56668899999999999999999999999999998


Q ss_pred             HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      |..       ..+...+|.++.+.|+.++|+.+|++|+.+-        +......+..|.++...+++++|+..+++..
T Consensus       520 P~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk  584 (638)
T KOG1126|consen  520 PSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEELK  584 (638)
T ss_pred             ccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            776       4667889999999999999999999999862        2234677889999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      ++        -|+...+++.+|.+|.++|+.+.|+..|--|..+
T Consensus       585 ~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  585 EL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             Hh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            98        8999999999999999999999999999999876

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.88  E-value=1.4e-19  Score=205.43  Aligned_cols=432  Identities=11%  Similarity=0.035  Sum_probs=262.9

Q ss_pred             cccccccccccCcccccCCCC--CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 004811          196 PMKKRKGKLHKGQDVSEAGLD--KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA  273 (729)
Q Consensus       196 ~~~~~~~~~~a~~~~~~~~~~--~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~  273 (729)
                      .+...+.+..+.+.+......  .+-....+..+...+...++ ++.|...+...++.-     -.  |+ ...+..+..
T Consensus        96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g-----~~--~~-~~~~n~Li~  166 (697)
T PLN03081         96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSG-----FE--PD-QYMMNRVLL  166 (697)
T ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhC-----CC--cc-hHHHHHHHH
Confidence            344555555555444333221  11234456666667777775 777777776665431     12  22 445777788


Q ss_pred             HHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------------
Q 004811          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV------------  341 (729)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------  341 (729)
                      .|.+.|++++|..+|++..+.            ...+|..+...|...|++++|+..|++.++.....            
T Consensus       167 ~y~k~g~~~~A~~lf~~m~~~------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~  234 (697)
T PLN03081        167 MHVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS  234 (697)
T ss_pred             HHhcCCCHHHHHHHHhcCCCC------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence            899999999999999887532            12247788888889999999999998876431000            


Q ss_pred             ----------------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 004811          342 ----------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK  405 (729)
Q Consensus       342 ----------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~  405 (729)
                                      ....-.....++..|...|.+.|++++|...|++....           ...+|+.+...|...
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----------~~vt~n~li~~y~~~  303 (697)
T PLN03081        235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----------TTVAWNSMLAGYALH  303 (697)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----------ChhHHHHHHHHHHhC
Confidence                            00000011123445566667777777777766654210           124566777777777


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (729)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (729)
                      |++++|+..|.+...    .+..|+. .++..+...+...|++++|.+.+..+++.       ..+....++..|...|.
T Consensus       304 g~~~eA~~lf~~M~~----~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~  371 (697)
T PLN03081        304 GYSEEALCLYYEMRD----SGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYS  371 (697)
T ss_pred             CCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHH
Confidence            777777777765532    2222322 35666666777777777777776666554       12334556667777777


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004811          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (729)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (729)
                      +.|++++|...|++..+.            ...+|+.+...|...|+.++|+++|++....     |..+. ..++..+.
T Consensus       372 k~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~~~ll  433 (697)
T PLN03081        372 KWGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPN-HVTFLAVL  433 (697)
T ss_pred             HCCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCC-HHHHHHHH
Confidence            777777777777654221            1345677777777777777777777776543     22222 23455666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (729)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (729)
                      ..+...|..++|..+|+...+.   . +..+  ....|..+..+|.+.|++++|.+++++.-         ..|+. .+|
T Consensus       434 ~a~~~~g~~~~a~~~f~~m~~~---~-g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~~---------~~p~~-~~~  497 (697)
T PLN03081        434 SACRYSGLSEQGWEIFQSMSEN---H-RIKP--RAMHYACMIELLGREGLLDEAYAMIRRAP---------FKPTV-NMW  497 (697)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHh---c-CCCC--CccchHhHHHHHHhcCCHHHHHHHHHHCC---------CCCCH-HHH
Confidence            6777777777777777665542   1 1111  23456667777777777777777665431         13332 357


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      ..|...+...|+++.|...+++.+++        .|.....|..|..+|...|++++|. +.++...+.
T Consensus       498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~  557 (697)
T PLN03081        498 AALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHc
Confidence            77777777777777777777766543        4555566777778888888888887 777766544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-18  Score=180.28  Aligned_cols=434  Identities=14%  Similarity=0.054  Sum_probs=334.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      ..+.++-.+...+...|+ |..+.++|++++...-         .....|+.++.+|...|.-..|+.+++..+...+  
T Consensus       321 nd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~~---------~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~--  388 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFSF---------GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE--  388 (799)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhh---------hhHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence            455666667777777887 8999999999887642         2355688899999999999999999999987742  


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-----------CHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-----------QFS  367 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~  367 (729)
                       .+.++.   ..++.-..|+...+.+++++.+..+++..+...   .+...+.++..+|.+|..+-           ...
T Consensus       389 -~ps~~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~  461 (799)
T KOG4162|consen  389 -QPSDIS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHK  461 (799)
T ss_pred             -CCCcch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence             122222   224445566778899999999999999976332   23445677888888886542           356


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004811          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR  447 (729)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  447 (729)
                      ++++.+++|+++.+.+.        .+.+.++.-|..+++.+.|+++.++++.+.     ....+.+|..++.++...++
T Consensus       462 kslqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr  528 (799)
T KOG4162|consen  462 KSLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKR  528 (799)
T ss_pred             HHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhh
Confidence            78888888888877664        458899999999999999999999998652     33456788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004811          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (729)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (729)
                      +.+|+.....+++-        .+.+.........+-...++.++|+..+...+.+++...+-...-+........+.+.
T Consensus       529 ~~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~  600 (799)
T KOG4162|consen  529 LKEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH  600 (799)
T ss_pred             hHHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence            99999999999987        4554555555566666789999999999999999875321111111122222333344


Q ss_pred             HhcchHHHHHHHHHHHHHHHHhC----------------CCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          528 ESMNELEQAIKLLQKALKIYNDA----------------PGQQ---STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~----------------~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                      ....+..+|+..+.++..+....                ++..   .....+|...+..+...++.++|..++.++-.+.
T Consensus       601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~  680 (799)
T KOG4162|consen  601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID  680 (799)
T ss_pred             cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence            44556666777666665554311                1111   1234567788999999999999999999988874


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH--HHH
Q 004811          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE--ILE  666 (729)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~  666 (729)
                              +..+..|+..|.++...|++.+|.+.|..|+.+        +|+...+...+|.++...|+..-|..  ++.
T Consensus       681 --------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~  744 (799)
T KOG4162|consen  681 --------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLS  744 (799)
T ss_pred             --------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence                    346788999999999999999999999999999        89999999999999999999888888  999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .++++        +|.+..+|+.||.++..+|+.++|. .+|..++++.+.
T Consensus       745 dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S  786 (799)
T KOG4162|consen  745 DALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES  786 (799)
T ss_pred             HHHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence            99987        7999999999999999999999999 999999999887

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.87  E-value=1.4e-17  Score=190.72  Aligned_cols=418  Identities=11%  Similarity=0.065  Sum_probs=288.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004811          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (729)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (729)
                      ++.....++..-..+.+.|+ +.+|++.|++....      +.. +.....+..+...+...|..++|..+|.....   
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~------gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---  434 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR------GLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---  434 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC------CCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence            33344555566666778887 88888888765431      111 11233344455667788888888888876543   


Q ss_pred             hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (729)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (729)
                          +     ...+|..+-..|...|++++|..+|.++.+..       -.....+|..+...|.+.|++++|..+|+++
T Consensus       435 ----p-----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM  498 (1060)
T PLN03218        435 ----P-----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEM  498 (1060)
T ss_pred             ----C-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence                1     12346777778888888888888888776541       1223466778888888888888888888887


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (729)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (729)
                      .+....   + +   ..+|..+...|.+.|++++|+..|.....    .+..|+ ..+|..+...|.+.|++++|.+.|.
T Consensus       499 ~~~Gv~---P-d---vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~  566 (1060)
T PLN03218        499 VNAGVE---A-N---VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLA  566 (1060)
T ss_pred             HHcCCC---C-C---HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            653211   1 1   35678888888888888888888876543    233333 3567888888888888888888888


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH
Q 004811          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (729)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (729)
                      +.......    -.|+ ..+|..+...|.+.|++++|.++|+++.+.      +.  .....+|..+...|.+.|++++|
T Consensus       567 eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~------gi--~p~~~tynsLI~ay~k~G~~deA  633 (1060)
T PLN03218        567 EMKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY------NI--KGTPEVYTIAVNSCSQKGDWDFA  633 (1060)
T ss_pred             HHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CC--CCChHHHHHHHHHHHhcCCHHHH
Confidence            77653100    0233 467778888888888888888888887665      11  11245677888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004811          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (729)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  616 (729)
                      +.+|.+....     +..+. ..+|..+...|.+.|++++|..++.++.+.    +-.   ....+|..+...|.+.|++
T Consensus       634 l~lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~---pd~~tynsLI~ay~k~G~~  700 (1060)
T PLN03218        634 LSIYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIK---LGTVSYSSLMGACSNAKNW  700 (1060)
T ss_pred             HHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC---CCHHHHHHHHHHHHhCCCH
Confidence            8888877653     22222 346777888888888888888888877642    111   1245788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004811          617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE  696 (729)
Q Consensus       617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~  696 (729)
                      ++|.++|++....     +. .|+ ..+|..|...|.+.|++++|+++|++....      .-.|+ ..++..|...+..
T Consensus       701 eeA~~lf~eM~~~-----g~-~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~------Gi~Pd-~~Ty~sLL~a~~k  766 (1060)
T PLN03218        701 KKALELYEDIKSI-----KL-RPT-VSTMNALITALCEGNQLPKALEVLSEMKRL------GLCPN-TITYSILLVASER  766 (1060)
T ss_pred             HHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHH
Confidence            8888888876543     11 344 347888888888888888888888877543      22344 3456667778888


Q ss_pred             hCCHhHHHHHHHHHHHhh
Q 004811          697 AGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       697 ~g~~~~A~~~~l~~al~~  714 (729)
                      .|++++|. ..+..+++.
T Consensus       767 ~G~le~A~-~l~~~M~k~  783 (1060)
T PLN03218        767 KDDADVGL-DLLSQAKED  783 (1060)
T ss_pred             CCCHHHHH-HHHHHHHHc
Confidence            88888888 888887664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.87  E-value=5.3e-19  Score=186.19  Aligned_cols=393  Identities=16%  Similarity=0.145  Sum_probs=292.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      ...+...|...+..|++++|..++.++++..     +..    ..+|+.||.+|..+|+.+++...+-.|-.+       
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------  202 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRN----PIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------  202 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccc----hhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence            3345567788888899999999999999886     333    335999999999999999999999888877       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  424 (729)
                       +|.....|..++....++|++.+|.-+|.+|++..|.+.        ......+.+|.+.|++..|...|.++++....
T Consensus       203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence             677779999999999999999999999999999988764        45778899999999999999999988775431


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 004811          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR--  502 (729)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  502 (729)
                      . +....-......+..+...++-+.|++.++.++....      .......+..++.++....+++.|.........  
T Consensus       274 ~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~  346 (895)
T KOG2076|consen  274 V-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE  346 (895)
T ss_pred             h-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence            1 1112222334457778888888999999999888422      233344566789999999999999888776655  


Q ss_pred             --------------------HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 004811          503 --------------------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (729)
Q Consensus       503 --------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (729)
                                          ++.-  +......+..+...++.+....++..+++..+..--..      ........+.
T Consensus       347 ~e~d~~e~~~~~~~~~~~~~~~~~--~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~  418 (895)
T KOG2076|consen  347 SEKDDSEWDTDERRREEPNALCEV--GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYL  418 (895)
T ss_pred             cCCChhhhhhhhhccccccccccC--CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHH
Confidence                                1111  01111222223556666666666666666555322111      1234467889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (729)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  642 (729)
                      .++.+|...|++.+|+.+|..+...       .....+.+|..+|.||..+|.+++|+++|++++..        .|+..
T Consensus       419 d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~  483 (895)
T KOG2076|consen  419 DLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNL  483 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCch
Confidence            9999999999999999999887653       12234679999999999999999999999999999        89999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIRE-EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                      ++...|+.+|.++|+.++|.+.+++...--. ..-+...+...........+|...|+.++-+ .....++.
T Consensus       484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~  554 (895)
T KOG2076|consen  484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVD  554 (895)
T ss_pred             hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence            9999999999999999999998887441000 0000112334566788899999999999876 55544443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.6e-19  Score=179.09  Aligned_cols=418  Identities=17%  Similarity=0.166  Sum_probs=296.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHHh-----c-CCC----CCHhHHHHHHHHHHHHHHcCChHH
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAK------SFEIG-----A-NGK----PSLELVMCLHVIAAIYCSLGQYNE  283 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~------~~~~~-----~-~~~----~~~~~~~~~~~la~~~~~~g~~~~  283 (729)
                      .....+..+.++....+ |++|+....++-.      .+++.     . +..    +..-....++..|.+|..+.++++
T Consensus        81 d~~cryL~~~~l~~lk~-~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~  159 (611)
T KOG1173|consen   81 DIACRYLAAKCLVKLKE-WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREE  159 (611)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHH
Confidence            34455666777777766 7777766653210      00010     0 000    011123345667999999999999


Q ss_pred             HHHHHHHhcccchhhccccchHHHHHHHHHHH-HHHHHcCCHHHH------HHHHHHHHHHHH-HHh-------CC----
Q 004811          284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLG-DTYAMLGQLENS------LMCYTTGLEVQK-QVL-------GE----  344 (729)
Q Consensus       284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A------~~~~~~al~~~~-~~~-------~~----  344 (729)
                      |...|.+|+.........-..  .+..+...+ ..+......+-|      .+..+...++.. +..       .+    
T Consensus       160 ar~~Y~~Al~~D~~c~Ea~~~--lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl  237 (611)
T KOG1173|consen  160 ARDKYKEALLADAKCFEAFEK--LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL  237 (611)
T ss_pred             HHHHHHHHHhcchhhHHHHHH--HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence            999999999875322211110  001111111 111111111111      111111111100 000       00    


Q ss_pred             -CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811          345 -TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (729)
Q Consensus       345 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  423 (729)
                       .-..........+..++..++|.+..+.+...++..|-....       .-..+| ++...|+..+-...-.+.   . 
T Consensus       238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~-------~~~~ia-~l~el~~~n~Lf~lsh~L---V-  305 (611)
T KOG1173|consen  238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC-------LPLHIA-CLYELGKSNKLFLLSHKL---V-  305 (611)
T ss_pred             hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch-------HHHHHH-HHHHhcccchHHHHHHHH---H-
Confidence             012345667788899999999999999999999988766532       234455 666777655443333322   2 


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                        ...|..+..|+.+|..|...|++.+|..+|-++..+        ++..+.+|...|..+...|..++|+..|..|-++
T Consensus       306 --~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl  375 (611)
T KOG1173|consen  306 --DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL  375 (611)
T ss_pred             --HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence              346777788999999999999999999999999998        8999999999999999999999999999999999


Q ss_pred             HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                      +...    ..     -...+|.-|...+++.-|..+|.+|+.+.|..+       .++..+|.+.+..+.|.+|..+|+.
T Consensus       376 ~~G~----hl-----P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-------lv~~Elgvvay~~~~y~~A~~~f~~  439 (611)
T KOG1173|consen  376 MPGC----HL-----PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-------LVLHELGVVAYTYEEYPEALKYFQK  439 (611)
T ss_pred             ccCC----cc-----hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-------hhhhhhhheeehHhhhHHHHHHHHH
Confidence            6543    22     355689999999999999999999999998773       6778899999999999999999999


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      ++...+....... .....+.+||.+|.+++.+++|+.+|++++.+        .|....++..+|.+|..+|+++.|++
T Consensus       440 ~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid  510 (611)
T KOG1173|consen  440 ALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAID  510 (611)
T ss_pred             HHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHH
Confidence            9988777766654 45678999999999999999999999999999        89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (729)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (729)
                      +|.+++.+        .|+...+-..|+....
T Consensus       511 ~fhKaL~l--------~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  511 HFHKALAL--------KPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHhc--------CCccHHHHHHHHHHHH
Confidence            99999987        4666555555554433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.87  E-value=2.2e-18  Score=191.84  Aligned_cols=418  Identities=11%  Similarity=-0.043  Sum_probs=306.5

Q ss_pred             CcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 004811          193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA  272 (729)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la  272 (729)
                      .+-..-.+|++..|++.+.++...+|.....+..++..+...|+ +++|+.++++++.         +.+.....+..+|
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~---------p~n~~~~~llalA  109 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQS---------SMNISSRGLASAA  109 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhcc---------CCCCCHHHHHHHH
Confidence            34455678888888889999999999986555588888888887 8999999999882         2222344566668


Q ss_pred             HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004811          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (729)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (729)
                      .+|...|+|++|+++|+++++..     ++.+.    ++..++.++...++.++|+..+++++..        +|.....
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~d-----P~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~~  172 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKD-----PTNPD----LISGMIMTQADAGRGGVVLKQATELAER--------DPTVQNY  172 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-----CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHHH
Confidence            89999999999999999999886     44433    3667899999999999999999999887        5664333


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHH----------------------
Q 004811          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA----------------------  410 (729)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~----------------------  410 (729)
                       ..++.++...++..+|+..++++++..|....        .+..+..+....|-...                      
T Consensus       173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~  243 (822)
T PRK14574        173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEE--------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER  243 (822)
T ss_pred             -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence             55566666677887799999999998876542        12222233322222222                      


Q ss_pred             --------------------------HHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          411 --------------------------ALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (729)
Q Consensus       411 --------------------------A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (729)
                                                |+..++..+......+ ..+....+....-.++...|++.+++..|+.....  
T Consensus       244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~--  321 (822)
T PRK14574        244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE--  321 (822)
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc--
Confidence                                      2222222221111111 12233445556666777889999999888866543  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (729)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (729)
                           ..+.-..+....|..|...+++++|+.+|..++.-.....   ..+........|...|...+++++|..++++.
T Consensus       322 -----~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~---~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~  393 (822)
T PRK14574        322 -----GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF---RNSDDLLDADDLYYSLNESEQLDKAYQFAVNY  393 (822)
T ss_pred             -----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc---CCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence                 1233345778889999999999999999999976532110   01112333467788899999999999999999


Q ss_pred             HHHHHh-C-------CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004811          544 LKIYND-A-------PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (729)
Q Consensus       544 l~~~~~-~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  615 (729)
                      ....|- .       ....+........++.++...|++.+|++.+++.+...        +....++..+|.++..+|.
T Consensus       394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDL  465 (822)
T ss_pred             HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence            875441 0       11234556778889999999999999999999987752        3356788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      +.+|...++.++.+        +|+...+...+|.++..+|++.+|......+++..
T Consensus       466 p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        466 PRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            99999999999888        89999999999999999999999999999998874

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.86  E-value=1.1e-18  Score=183.97  Aligned_cols=353  Identities=14%  Similarity=0.102  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (729)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (729)
                      +..++..|+..+..|++++|+..+.+++..        +|....+|+.||.+|.++|+.+++...+-.|-.+.|+..   
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---  207 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---  207 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---
Confidence            445778888899999999999999999998        799999999999999999999999999988887776664   


Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (729)
                           ..|..++.....+|++.+|.-+|.+|++.      .|......+..+.+|.++|+...|...|.+++.+....  
T Consensus       208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~--  274 (895)
T KOG2076|consen  208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV--  274 (895)
T ss_pred             -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence                 35999999999999999999999999864      45556778889999999999999999999999983100  


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--
Q 004811          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK--  545 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  545 (729)
                       +...........+..+...++-+.|++.++.++......       .....++.++.++....+++.|.........  
T Consensus       275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~  346 (895)
T KOG2076|consen  275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRE  346 (895)
T ss_pred             -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence             011223334455778888888899999999999843221       1233466788899999999999888776555  


Q ss_pred             --------------------HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 004811          546 --------------------IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ  605 (729)
Q Consensus       546 --------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  605 (729)
                                          +++-..+....+..+...++.+..+.++..+++..+..--..       .+......+..
T Consensus       347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d  419 (895)
T KOG2076|consen  347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLD  419 (895)
T ss_pred             cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHH
Confidence                                111111111222234556677777777777777666432221       12345678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 004811          606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD  685 (729)
Q Consensus       606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~  685 (729)
                      ++.++...|++.+|+.+|..+...      + -.....+|+.+|.||..+|.+++|+++|++++.+        .|++.+
T Consensus       420 ~a~al~~~~~~~~Al~~l~~i~~~------~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D  484 (895)
T KOG2076|consen  420 LADALTNIGKYKEALRLLSPITNR------E-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD  484 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhcC------c-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence            999999999999999999998764      1 1233568999999999999999999999999977        699999


Q ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          686 EKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       686 ~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                      +...|+.++..+|+.++|. +.++....-+
T Consensus       485 ~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D  513 (895)
T KOG2076|consen  485 ARITLASLYQQLGNHEKAL-ETLEQIINPD  513 (895)
T ss_pred             hhhhHHHHHHhcCCHHHHH-HHHhcccCCC
Confidence            9999999999999999999 9998877444

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.85  E-value=1.9e-17  Score=189.59  Aligned_cols=375  Identities=15%  Similarity=0.146  Sum_probs=288.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc
Q 004811          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (729)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (729)
                      +..+...+...|. ..+|+.++....         .++   ...|..+-..|...|++++|..+|.++.+..     .. 
T Consensus       409 ~~~li~~~~~~g~-~~eAl~lf~~M~---------~pd---~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----l~-  469 (1060)
T PLN03218        409 HAKFFKACKKQRA-VKEAFRFAKLIR---------NPT---LSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----LK-  469 (1060)
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHcC---------CCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CC-
Confidence            3344455666676 777776654332         132   4567788889999999999999999987652     11 


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (729)
Q Consensus       304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (729)
                        ....+|..+...|.+.|++++|..+|+++.+..      -.| ...+|..+...|.+.|++++|+.+|.+.....-. 
T Consensus       470 --pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-  539 (1060)
T PLN03218        470 --ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-  539 (1060)
T ss_pred             --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-
Confidence              123358889999999999999999999987641      123 4578899999999999999999999987654211 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (729)
Q Consensus       384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (729)
                        ++    ..+|..+...|.+.|++++|.+.|.+....  ..+..|+ ..+|..+...|.+.|++++|.++|+++.+.  
T Consensus       540 --PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~--  608 (1060)
T PLN03218        540 --PD----RVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY--  608 (1060)
T ss_pred             --CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence              11    357899999999999999999999877532  1122333 357788889999999999999999988765  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (729)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (729)
                           +.+....+|..+...|.+.|++++|+.+|.+....      +..+ + ..+|..+...|...|++++|..++.++
T Consensus       609 -----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~P-D-~~TynsLI~a~~k~G~~eeA~~l~~eM  675 (1060)
T PLN03218        609 -----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVKP-D-EVFFSALVDVAGHAGDLDKAFEILQDA  675 (1060)
T ss_pred             -----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-C-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                 23445678999999999999999999999998765      2112 2 457888999999999999999999998


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (729)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  623 (729)
                      .+.     +..+. ..+|..+...|.+.|++++|..+|++....    +. .+  ...+|+.+...|.+.|++++|+++|
T Consensus       676 ~k~-----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~P--dvvtyN~LI~gy~k~G~~eeAlelf  742 (1060)
T PLN03218        676 RKQ-----GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RP--TVSTMNALITALCEGNQLPKALEVL  742 (1060)
T ss_pred             HHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            754     22222 357889999999999999999999887542    11 12  2467999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      ++....     +. .|+. .+|..+...+...|++++|..++.++++.
T Consensus       743 ~eM~~~-----Gi-~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        743 SEMKRL-----GL-CPNT-ITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHc-----CC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            997653     21 3554 37777889999999999999999998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.84  E-value=2.3e-18  Score=195.41  Aligned_cols=369  Identities=15%  Similarity=0.068  Sum_probs=286.2

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      ...+..+...|.+.|+ +++|...|++...         ++   ..+|..+...|.+.|++++|+.+|+++++....   
T Consensus       158 ~~~~n~Li~~y~k~g~-~~~A~~lf~~m~~---------~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~---  221 (697)
T PLN03081        158 QYMMNRVLLMHVKCGM-LIDARRLFDEMPE---------RN---LASWGTIIGGLVDAGNYREAFALFREMWEDGSD---  221 (697)
T ss_pred             hHHHHHHHHHHhcCCC-HHHHHHHHhcCCC---------CC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---
Confidence            5567778888999997 8877777765421         22   456888999999999999999999998754211   


Q ss_pred             ccch------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004811          301 QEHA------------------------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (729)
Q Consensus       301 ~~~~------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (729)
                      ++..                              .....++..|...|.+.|++++|...|++..           +...
T Consensus       222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~  290 (697)
T PLN03081        222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTT  290 (697)
T ss_pred             CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCCh
Confidence            1100                              0011235667888999999999999987642           2355


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (729)
                      .+|..+...|.+.|++++|+.+|++.....-.   ++    ..++..+...+...|++++|.+.+..+++.    +.. .
T Consensus       291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---pd----~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~-~  358 (697)
T PLN03081        291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---ID----QFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFP-L  358 (697)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CC----HHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCC-C
Confidence            78999999999999999999999988653211   11    246889999999999999999999877642    222 2


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      ...++..+...|.+.|++++|...|++..+          + ...+|..+...|.+.|+.++|+.+|++....      +
T Consensus       359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g  421 (697)
T PLN03081        359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE------G  421 (697)
T ss_pred             CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence            345778899999999999999999987642          2 3468999999999999999999999998865      2


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (729)
                      . .|+ ..++..+...+...|..++|..+|+...+..    +..+. ...|..+..+|.+.|++++|.+.++++      
T Consensus       422 ~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~------  488 (697)
T PLN03081        422 V-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RIKPR-AMHYACMIELLGREGLLDEAYAMIRRA------  488 (697)
T ss_pred             C-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCC-ccchHhHHHHHHhcCCHHHHHHHHHHC------
Confidence            2 122 4568888889999999999999999887643    22222 246788999999999999999887653      


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                       ... +  ...+|..+...+...|+++.|...+++.+.+        .|+....|..|+.+|...|++++|.+.++...+
T Consensus       489 -~~~-p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        489 -PFK-P--TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             -CCC-C--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence             111 1  2457899999999999999999999998876        677777899999999999999999999997764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=9.2e-17  Score=154.50  Aligned_cols=424  Identities=12%  Similarity=0.037  Sum_probs=304.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-----------CCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGA-----------NGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (729)
                      .....+..+....+.... |..|...|..++..-....           ...+.+.........+.||...++-+.|+..
T Consensus        41 ~~yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~  119 (564)
T KOG1174|consen   41 VEYQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIET  119 (564)
T ss_pred             HHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHH
Confidence            344455555555555543 6677777776665432110           1122244455567789999999999999998


Q ss_pred             HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------------------------
Q 004811          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV--------------------------  341 (729)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------  341 (729)
                      +.......      ..|.    .-+.++..+..-++..++.-.|...+..+.-.                          
T Consensus       120 l~~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~  189 (564)
T KOG1174|consen  120 LLQVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAAT  189 (564)
T ss_pred             HhcCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhee
Confidence            87765442      1221    24455666665555545544444433221110                          


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004811          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (729)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  421 (729)
                      ..+..|........+|.++....-+.-+..++-+-....+.+        ...+..+|.+++..|++.+|+..|+++..+
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~  261 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLCA  261 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence            001111111122233433333333334444444434444333        345788999999999999999999988653


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (729)
Q Consensus       422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (729)
                            +|......-..|.++...|+++.-.......+.+        ......-|+.-+..++...++..|+.+-++++
T Consensus       262 ------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I  327 (564)
T KOG1174|consen  262 ------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCI  327 (564)
T ss_pred             ------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence                  6777777778889999999999887777777666        33455667777888899999999999999999


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (729)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (729)
                      +.         .+....++...|.++..+++.++|+-.|+.|..+.|-.       ..+|..|-.+|+..|.+.+|....
T Consensus       328 ~~---------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~A  391 (564)
T KOG1174|consen  328 DS---------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALA  391 (564)
T ss_pred             cc---------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHH
Confidence            98         44456789999999999999999999999999988655       478899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004811          582 KNAISKLRAIGERKSAFFGVALNQMG-LACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD  659 (729)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  659 (729)
                      ..++..+..        .+.++..+| .++. .-.--++|..++++++.+        .|....+...+|.++...|+++
T Consensus       392 n~~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~  455 (564)
T KOG1174|consen  392 NWTIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTK  455 (564)
T ss_pred             HHHHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccc
Confidence            988887643        345666665 4433 233468999999999999        9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +++.++++++..+        |+ ...+..||.++...+.+.+|. .+|..|+.+||+
T Consensus       456 D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~  503 (564)
T KOG1174|consen  456 DIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPK  503 (564)
T ss_pred             hHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCcc
Confidence            9999999999864        33 457889999999999999999 999999999998

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.83  E-value=2.6e-17  Score=154.45  Aligned_cols=333  Identities=15%  Similarity=0.118  Sum_probs=243.8

Q ss_pred             CCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (729)
Q Consensus       260 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  339 (729)
                      .+|..+.-...+|..++..|++..|+..|..|++..     +    ....+++..|.+|..+|+-.-|+..+.+++++  
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--  101 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----P----NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--  101 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----c----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence            335556667889999999999999999999999886     2    23446899999999999999999999999999  


Q ss_pred             HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004811          340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS  419 (729)
Q Consensus       340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al  419 (729)
                            .|+...+....|.++.++|++++|..-|..+++..+.....     -.+...++.+          .       
T Consensus       102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~----------~-------  153 (504)
T KOG0624|consen  102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALI----------Q-------  153 (504)
T ss_pred             ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhH----------H-------
Confidence                  79999999999999999999999999999999887655421     0111111110          0       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (729)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (729)
                                 ....+......+...|+...|+.+....+++        .|..+..+...+.+|...|+...|+..++.
T Consensus       154 -----------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~  214 (504)
T KOG0624|consen  154 -----------EHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQ  214 (504)
T ss_pred             -----------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                       0122333445566778888888888888888        788888888888888888888888888888


Q ss_pred             HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH---HH--HHHHHHHHHHcCCH
Q 004811          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA---GI--EAQMGVMYYMLGNY  574 (729)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~--~~~la~~~~~~g~~  574 (729)
                      +-++.         .+....++.++.+++..|+.+.++...++++++.|++..-.+..-   .+  ...-+......++|
T Consensus       215 askLs---------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~  285 (504)
T KOG0624|consen  215 ASKLS---------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW  285 (504)
T ss_pred             HHhcc---------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            87772         223567788888888888888888888888887665521111000   00  00112233445666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (729)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (729)
                      .+++...++.++.-    +............+..|+..-|++.+|+....+++.+        +|+.+.++...|.+|..
T Consensus       286 t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  286 TECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HHHHHHHHHHHhcC----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhh
Confidence            66666666655531    1112222345566778888888899999988888888        88888899999999988


Q ss_pred             cCChHHHHHHHHHHHHH
Q 004811          655 IGRLDDAIEILEFVVGI  671 (729)
Q Consensus       655 ~g~~~~A~~~~~~al~~  671 (729)
                      ...|+.|+.-|++|.++
T Consensus       354 dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  354 DEMYDDAIHDYEKALEL  370 (504)
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            88899999999988876

>PLN03077 Protein ECB2; Provisional

Probab=99.82  E-value=1.7e-17  Score=193.05  Aligned_cols=150  Identities=9%  Similarity=-0.023  Sum_probs=74.1

Q ss_pred             cccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811          196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (729)
Q Consensus       196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~  275 (729)
                      .+.+.|+...|...+......   ....|..+...+.+.|+ +++|+++|.+....-     ..|+   ...+..+...+
T Consensus       231 ~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g-----~~Pd---~~ty~~ll~a~  298 (857)
T PLN03077        231 MYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGE-CLEGLELFFTMRELS-----VDPD---LMTITSVISAC  298 (857)
T ss_pred             HHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCC-HHHHHHHHHHHHHcC-----CCCC---hhHHHHHHHHH
Confidence            344555555555555554432   23467778888999997 999999988876421     1111   22233344444


Q ss_pred             HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (729)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (729)
                      ...|+.+.|.+++..+++...   .     ....++..|...|.+.|++++|...|++...          | ...+|..
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g~---~-----~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~s~n~  359 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTGF---A-----VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAVSWTA  359 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhCC---c-----cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CeeeHHH
Confidence            445555555555544443210   0     0122344444455555555555544443210          1 1223444


Q ss_pred             HHHHHHHhcCHHHHHHHHHHH
Q 004811          356 LAEAHVQALQFSEAQKFCQMA  376 (729)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~a  376 (729)
                      +...|.+.|++++|+.+|++.
T Consensus       360 li~~~~~~g~~~~A~~lf~~M  380 (857)
T PLN03077        360 MISGYEKNGLPDKALETYALM  380 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHH
Confidence            444444455555555544443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=3.4e-17  Score=163.65  Aligned_cols=415  Identities=17%  Similarity=0.182  Sum_probs=280.6

Q ss_pred             cccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH
Q 004811          198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS  277 (729)
Q Consensus       198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~  277 (729)
                      .+.++|..++..+.+....+|.+...+-++..++...|+ |++|+.-..+.+++.         |+++..|..+|..++.
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~---------p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN---------PDWAKGYSRKGAALFG   82 (539)
T ss_pred             cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC---------CchhhHHHHhHHHHHh
Confidence            445677778888888889999999999999999999998 999999888888763         6788999999999999


Q ss_pred             cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHH
Q 004811          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---------------------QLENSLMCYTTGLE  336 (729)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~  336 (729)
                      +|+|++|+..|.+.|+..     +...    ..+..|+.++...-                     ++-.....|...++
T Consensus        83 lg~~~eA~~ay~~GL~~d-----~~n~----~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~  153 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKD-----PSNK----QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILE  153 (539)
T ss_pred             cccHHHHHHHHHHHhhcC-----CchH----HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence            999999999999999986     2222    12455555551110                     01111122333333


Q ss_pred             HHHHHhCCCCchHHHHHH-------HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC------------C------CHHH
Q 004811          337 VQKQVLGETDPRVGETCR-------YLAEAHVQALQFSEAQKFCQMALDIHKDNGSP------------A------SLEE  391 (729)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~------~~~~  391 (729)
                      ..++     .|.....+.       .++.+.. .+..    ..+.......+....+            +      ....
T Consensus       154 ~~~~-----~p~~l~~~l~d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~  223 (539)
T KOG0548|consen  154 IIQK-----NPTSLKLYLNDPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEK  223 (539)
T ss_pred             Hhhc-----CcHhhhcccccHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHh
Confidence            3222     111111111       1111000 0000    0000000000000000            0      0113


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (729)
                      +.....+|.......++..|+++|.+++.+.       .....+.+.+.+|+..|.+.+.+....++++....... +..
T Consensus       224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~k  295 (539)
T KOG0548|consen  224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYK  295 (539)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHH
Confidence            5567789999999999999999999998753       33456678899999999999999988888776433211 122


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (729)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (729)
                      ..+.++..+|..|...++++.|+.+|++++.-.+.                 ..+.......++++...+...-+.+.. 
T Consensus       296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-  357 (539)
T KOG0548|consen  296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERKAYINPEK-  357 (539)
T ss_pred             HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHHHhhChhH-
Confidence            35566667888999999999999999998877433                 223333444455554444333332222 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (729)
                            +.-...-|..++..|+|..|+.+|.+|+..        .+..+..|.+.|.||..+|.+..|+...+.++++  
T Consensus       358 ------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--  421 (539)
T KOG0548|consen  358 ------AEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--  421 (539)
T ss_pred             ------HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence                  334445688888899999999999888775        2335678888899999999999999988888888  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (729)
                            +|.....|..-|.++..+.+|++|++.|+++++.        +|....+...+.+++..+
T Consensus       422 ------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 ------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             ------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence                  8888888888899999899999999999888865        677777777777776653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.82  E-value=8.8e-16  Score=181.27  Aligned_cols=420  Identities=15%  Similarity=0.064  Sum_probs=304.4

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      ...+...+..+...|+ +.+|+.++..+-.          .......+...+..+...|++..+..++..+- ...   .
T Consensus       341 ~~lh~raa~~~~~~g~-~~~Al~~a~~a~d----------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp-~~~---~  405 (903)
T PRK04841        341 PELHRAAAEAWLAQGF-PSEAIHHALAAGD----------AQLLRDILLQHGWSLFNQGELSLLEECLNALP-WEV---L  405 (903)
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHCCC----------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCC-HHH---H
Confidence            3444555555666775 7777776554421          13345556667888888999988777775541 110   0


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (729)
                      ..++.    .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++..
T Consensus       406 ~~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  481 (903)
T PRK04841        406 LENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE  481 (903)
T ss_pred             hcCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            11111    2456788888999999999999988766432110001 123455666888999999999999999999985


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL  459 (729)
Q Consensus       380 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  459 (729)
                      .+..   .....+.++..+|.++...|++++|...+.+++......+.......++..+|.++...|++++|..++++++
T Consensus       482 ~~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  558 (903)
T PRK04841        482 LPLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAF  558 (903)
T ss_pred             CCCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3322   2233455678899999999999999999999998887776666667788999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004811          460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (729)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (729)
                      .+.....+...+.....+..+|.++...|++++|...+.+++.+.....    ......++..++.++...|++++|...
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~  634 (903)
T PRK04841        559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARRY  634 (903)
T ss_pred             HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9988765433444455677889999999999999999999999876531    223456778899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004811          540 LQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (729)
Q Consensus       540 ~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (729)
                      +.++..+.... +... ............+...|+.+.|..++......    ...........+..++.++...|++++
T Consensus       635 l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~  709 (903)
T PRK04841        635 LNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFDE  709 (903)
T ss_pred             HHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHHH
Confidence            99999886654 2111 11111111234556688999988887664431    001111123345678999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      |..++++++........  ......++..+|.++...|+.++|...+.+++++..
T Consensus       710 A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        710 AEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            99999999998665433  346677889999999999999999999999999864

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.79  E-value=7.7e-15  Score=173.25  Aligned_cols=423  Identities=15%  Similarity=0.036  Sum_probs=302.7

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (729)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (729)
                      ....+...+..+...|++.+|+.++..+-..          ..........+..+...|++..+..++..+-...    .
T Consensus       340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~  405 (903)
T PRK04841        340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV----L  405 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----H
Confidence            3455666777788899999998877665322          1233456667888888999888777665431110    0


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  422 (729)
                      ..+|.   .....+.++...|++++|..++..+.......... .......+...++.++...|++++|..++++++...
T Consensus       406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  482 (903)
T PRK04841        406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL  482 (903)
T ss_pred             hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            11233   34567778889999999999999987765432211 112234556678899999999999999999988642


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (729)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (729)
                      .. ........++..+|.++...|++++|..++++++........  ......++..+|.++...|++++|..++++++.
T Consensus       483 ~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  559 (903)
T PRK04841        483 PL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ  559 (903)
T ss_pred             CC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            21 222234556788999999999999999999999998876542  233456778999999999999999999999999


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (729)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (729)
                      +..... ....+.....+..+|.++...|++++|...+.+++.+.... + .......+..++.++...|++++|...+.
T Consensus       560 ~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~  636 (903)
T PRK04841        560 LIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN  636 (903)
T ss_pred             HHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            977642 11223334456778999999999999999999999987754 2 22345567789999999999999999999


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (729)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (729)
                      ++..+....... ..............+...|+.+.|..++.......   .+. .......+..++.++...|++++|.
T Consensus       637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~-~~~~~~~~~~~a~~~~~~g~~~~A~  711 (903)
T PRK04841        637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FAN-NHFLQGQWRNIARAQILLGQFDEAE  711 (903)
T ss_pred             HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Ccc-chhHHHHHHHHHHHHHHcCCHHHHH
Confidence            998876543211 11111111112344556789999988876654310   010 1112223568999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..+++++...+.. | .......++..+|.++...|+.++|. ..+.+++++...
T Consensus       712 ~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la~~  763 (903)
T PRK04841        712 IILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCc
Confidence            9999999886543 2 23456778889999999999999999 999999998765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=155.29  Aligned_cols=245  Identities=19%  Similarity=0.188  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      +.-..+|.||+++|-+.+|...++.+++.         ...+..+..|+.+|.+..+...|+..|.+.++.         
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---------  285 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---------  285 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---------
Confidence            34467999999999999999999999985         344678889999999999999999999999988         


Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      .|..+..+..++.++..++++++|.++|+.+++..+.+       .++...+|.-|+..++.+-|+.+|.+.+++-    
T Consensus       286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG----  354 (478)
T KOG1129|consen  286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN-------VEAIACIAVGYFYDNNPEMALRYYRRILQMG----  354 (478)
T ss_pred             CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-------ceeeeeeeeccccCCChHHHHHHHHHHHHhc----
Confidence            34456778899999999999999999999999887655       2444567888999999999999999999872    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                          ...+..+.++|.|++..++++-++..|++|+....+     .....++|++||.+....|++.-|..+|+-++.  
T Consensus       355 ----~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--  423 (478)
T KOG1129|consen  355 ----AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--  423 (478)
T ss_pred             ----CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhc--
Confidence                224578999999999999999999999999988543     345677999999999999999999999999984  


Q ss_pred             HHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCccc
Q 004811          673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIE  724 (729)
Q Consensus       673 ~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~  724 (729)
                            .+++...++.+||.+-.+.|+.++|. ..|..+-...|+  ....+++
T Consensus       424 ------~d~~h~ealnNLavL~~r~G~i~~Ar-sll~~A~s~~P~m~E~~~Nl~  470 (478)
T KOG1129|consen  424 ------SDAQHGEALNNLAVLAARSGDILGAR-SLLNAAKSVMPDMAEVTTNLQ  470 (478)
T ss_pred             ------cCcchHHHHHhHHHHHhhcCchHHHH-HHHHHhhhhCcccccccccee
Confidence                  58999999999999999999999999 999999999999  4444444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.79  E-value=6.8e-15  Score=149.49  Aligned_cols=427  Identities=14%  Similarity=0.033  Sum_probs=321.8

Q ss_pred             cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 004811          212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS  291 (729)
Q Consensus       212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  291 (729)
                      .+...-|.....|+.+++.-     .|+.|...+.+|-+.++..      +.   +|..-+.+-...|+.+....+..++
T Consensus       401 rAveccp~s~dLwlAlarLe-----tYenAkkvLNkaRe~iptd------~~---IWitaa~LEE~ngn~~mv~kii~rg  466 (913)
T KOG0495|consen  401 RAVECCPQSMDLWLALARLE-----TYENAKKVLNKAREIIPTD------RE---IWITAAKLEEANGNVDMVEKIIDRG  466 (913)
T ss_pred             HHHHhccchHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCCC------hh---HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34445577777777766643     2777777777766654321      22   2333444455555555555555444


Q ss_pred             cccchhh----------------------------------ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          292 IEIPVIE----------------------------------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (729)
Q Consensus       292 l~~~~~~----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (729)
                      +.-....                                  .|.+. ......|..-+..+...+.++-|+..|..+++.
T Consensus       467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe-ed~~~tw~~da~~~~k~~~~~carAVya~alqv  545 (913)
T KOG0495|consen  467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE-EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV  545 (913)
T ss_pred             HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc-chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence            3321100                                  00111 012234777788888899999999999999998


Q ss_pred             HHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004811          338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (729)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  417 (729)
                              .|..-..|...+.+-..-|..+.-..++++++...|+..        ..|...+..++..|+...|...+.+
T Consensus       546 --------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae--------~lwlM~ake~w~agdv~~ar~il~~  609 (913)
T KOG0495|consen  546 --------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE--------ILWLMYAKEKWKAGDVPAARVILDQ  609 (913)
T ss_pred             --------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch--------hHHHHHHHHHHhcCCcHHHHHHHHH
Confidence                    577777888888888888999999999999999887654        3477778888999999999999998


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (729)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (729)
                      ++..      .|..-.+|..--.+.....+++.|..+|.++...         .....+|+.-+.+...+++.++|+.++
T Consensus       610 af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rll  674 (913)
T KOG0495|consen  610 AFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLL  674 (913)
T ss_pred             HHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence            8753      3444566666677888899999999999998775         445688889999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (729)
                      +++++.+         |.....|..+|+++..+++.+.|...|...++.+|..       ..+|..|+.+-.+.|..-.|
T Consensus       675 Ee~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------ipLWllLakleEk~~~~~rA  738 (913)
T KOG0495|consen  675 EEALKSF---------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------IPLWLLLAKLEEKDGQLVRA  738 (913)
T ss_pred             HHHHHhC---------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------chHHHHHHHHHHHhcchhhH
Confidence            9999994         4457789999999999999999999999998888766       36788899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------cCCC------------
Q 004811          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE--------CGPY------------  637 (729)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~------------  637 (729)
                      ...++++.-.        .+.....|......-++.|+.+.|..+..+|++-+...        .-..            
T Consensus       739 R~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL  810 (913)
T KOG0495|consen  739 RSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL  810 (913)
T ss_pred             HHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence            9999988643        12245677777788888999999999999988764321        0000            


Q ss_pred             --ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          638 --HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       638 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                        ......++..+|.++....++++|.++|.+++.+        +|++.++|..+-..+...|.-++-. +.|.+.....
T Consensus       811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~k-ev~~~c~~~E  881 (913)
T KOG0495|consen  811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQK-EVLKKCETAE  881 (913)
T ss_pred             HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHH-HHHHHHhccC
Confidence              1122346778899999999999999999999987        6888999999999999999999988 9999999888


Q ss_pred             cc
Q 004811          716 SR  717 (729)
Q Consensus       716 p~  717 (729)
                      |.
T Consensus       882 P~  883 (913)
T KOG0495|consen  882 PT  883 (913)
T ss_pred             CC
Confidence            86

>PLN03077 Protein ECB2; Provisional

Probab=99.79  E-value=3.1e-16  Score=182.52  Aligned_cols=426  Identities=14%  Similarity=0.036  Sum_probs=278.4

Q ss_pred             ccccccccccccCcccccCC--CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 004811          195 TPMKKRKGKLHKGQDVSEAG--LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA  272 (729)
Q Consensus       195 ~~~~~~~~~~~a~~~~~~~~--~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la  272 (729)
                      ..+.+.++...+.+.+.+..  ...|+ ...+..+...+...|+ .+.|.+.+..+++.-     -.++   ...+..+.
T Consensus       261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~-~~~a~~l~~~~~~~g-----~~~d---~~~~n~Li  330 (857)
T PLN03077        261 SGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELLGD-ERLGREMHGYVVKTG-----FAVD---VSVCNSLI  330 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC-hHHHHHHHHHHHHhC-----Cccc---hHHHHHHH
Confidence            33445555555554443321  23454 3445556666777886 899988888876541     1222   45678888


Q ss_pred             HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004811          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (729)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (729)
                      ..|.+.|++++|..+|++...-.            ..+|..+...|.+.|++++|+.+|++.....      -.|+. .+
T Consensus       331 ~~y~k~g~~~~A~~vf~~m~~~d------------~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~-~t  391 (857)
T PLN03077        331 QMYLSLGSWGEAEKVFSRMETKD------------AVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDE-IT  391 (857)
T ss_pred             HHHHhcCCHHHHHHHHhhCCCCC------------eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCc-ee
Confidence            89999999999999998865321            1247888888999999999999998875541      12332 34


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004811          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA  432 (729)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  432 (729)
                      +..+-..+...|++++|.+++..+.+......       ..++..+...|.+.|++++|.+.|++...        + ..
T Consensus       392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~-------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------~-d~  455 (857)
T PLN03077        392 IASVLSACACLGDLDVGVKLHELAERKGLISY-------VVVANALIEMYSKCKCIDKALEVFHNIPE--------K-DV  455 (857)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------C-Ce
Confidence            44455567777888888888877765432211       24567777778888888888877765421        1 12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------------------------------hhHHHHHHHHH
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------------------------------PAVASVFVRLA  481 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~la  481 (729)
                      .+|..+...|...|++++|+..|++.+..    ..++.                               .....++..|.
T Consensus       456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi  531 (857)
T PLN03077        456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL  531 (857)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence            35666777777788888888877776531    11110                               11112233445


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 004811          482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE  561 (729)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  561 (729)
                      ..|.+.|++++|...|+..    ..         ...+|+.+...|...|+.++|+.+|++..+.     +..+. ..++
T Consensus       532 ~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~  592 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPD-EVTF  592 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-cccH
Confidence            6677777777777766653    11         1456778888888888888888888876653     11111 1234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (729)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  641 (729)
                      ..+-..+.+.|++++|..+|+...+..    +..+  ....|..+..++.+.|++++|.+++++.- +        .|+ 
T Consensus       593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~--------~pd-  656 (857)
T PLN03077        593 ISLLCACSRSGMVTQGLEYFHSMEEKY----SITP--NLKHYACVVDLLGRAGKLTEAYNFINKMP-I--------TPD-  656 (857)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHh----CCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C--------CCC-
Confidence            555567788888888888888766321    1111  23567788888888888888888877641 1        344 


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                      ..+|..|-..+...|+.+.|....++++++        .|+....+..|+.+|...|++++|. +..+...+
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~ya~~g~~~~a~-~vr~~M~~  719 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLYADAGKWDEVA-RVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHCCChHHHH-HHHHHHHH
Confidence            336666667777788888888777777765        5777778888899999999999988 77766644

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.78  E-value=2.2e-15  Score=141.71  Aligned_cols=339  Identities=14%  Similarity=0.090  Sum_probs=240.3

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004811          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (729)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  294 (729)
                      ..+|....-.+.+|..++..|+ +..|+..|..|++.         +|....+++..|.+|..+|+-.-|+..+.+++++
T Consensus        32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~---------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel  101 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEG---------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL  101 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcC---------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence            4567788889999999999998 99999999999874         3667888999999999999999999999999998


Q ss_pred             chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHHHHhcCHHHHHH
Q 004811          295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR---VGETCRYLAEAHVQALQFSEAQK  371 (729)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~  371 (729)
                      .     +    ....+....|.++.++|.+++|...|.++++.        +|.   ..++...++.+-.          
T Consensus       102 K-----p----DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~--------~~s~~~~~eaqskl~~~~e----------  154 (504)
T KOG0624|consen  102 K-----P----DFMAARIQRGVVLLKQGELEQAEADFDQVLQH--------EPSNGLVLEAQSKLALIQE----------  154 (504)
T ss_pred             C-----c----cHHHHHHHhchhhhhcccHHHHHHHHHHHHhc--------CCCcchhHHHHHHHHhHHH----------
Confidence            6     2    23446889999999999999999999999887        342   2223222222110          


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (729)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (729)
                      .                    ..+......+...|++..|+++....+.+      .|..+..+...+.||...|+...|
T Consensus       155 ~--------------------~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~A  208 (504)
T KOG0624|consen  155 H--------------------WVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKA  208 (504)
T ss_pred             H--------------------HHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHH
Confidence            0                    11223333444556777777766665542      455556666677777777777777


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH--------
Q 004811          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV--------  523 (729)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--------  523 (729)
                      +.-++.+-++        ..+....++.++.+++..|+.+.++...++++++      ..++..-...|-.|        
T Consensus       209 I~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl------dpdHK~Cf~~YKklkKv~K~le  274 (504)
T KOG0624|consen  209 IHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL------DPDHKLCFPFYKKLKKVVKSLE  274 (504)
T ss_pred             HHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc------CcchhhHHHHHHHHHHHHHHHH
Confidence            7777776666        4555667777777777777777777777777766      22232222222222        


Q ss_pred             -HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 004811          524 -SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (729)
Q Consensus       524 -a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (729)
                       +.-....++|.++++..++.++..|..   ..........+..|+...|++-+|+....+++++.        +..+.+
T Consensus       275 s~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--------~~dv~~  343 (504)
T KOG0624|consen  275 SAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--------PDDVQV  343 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--------chHHHH
Confidence             223345567777777777777655442   12222344567788999999999999999998862        335788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (729)
                      +...+.+|+....|+.|+.-|++|.+.        ++....+...+-
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~e~--------n~sn~~~reGle  382 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKALEL--------NESNTRAREGLE  382 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhc--------CcccHHHHHHHH
Confidence            999999999999999999999999998        666555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.78  E-value=7e-16  Score=156.54  Aligned_cols=375  Identities=16%  Similarity=0.073  Sum_probs=276.8

Q ss_pred             ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811          211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ  290 (729)
Q Consensus       211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  290 (729)
                      ...+....+.-..|+.-+..+...+- ++-|+..|..|++.+.         ..-..|...+..--..|..+.-..+|++
T Consensus       506 igigvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp---------~k~slWlra~~~ek~hgt~Esl~Allqk  575 (913)
T KOG0495|consen  506 IGIGVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFP---------CKKSLWLRAAMFEKSHGTRESLEALLQK  575 (913)
T ss_pred             HhhccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34555666667778888888888875 8888888888888762         2234455555555667788888888888


Q ss_pred             hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH
Q 004811          291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ  370 (729)
Q Consensus       291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  370 (729)
                      ++...     +..+.    .|+..+..+...|+...|...+.++++.        +|...++|+.--.+.+...+++.|.
T Consensus       576 av~~~-----pkae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR  638 (913)
T KOG0495|consen  576 AVEQC-----PKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERAR  638 (913)
T ss_pred             HHHhC-----Ccchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHH
Confidence            88765     22221    3677778888888888888888888887        6777778877777888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHH
Q 004811          371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE  450 (729)
Q Consensus       371 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  450 (729)
                      .+|.++....+.         ..+|..-+.+...+++.++|+.+++.+++.      .|.....|..+|.++..+++.+.
T Consensus       639 ~llakar~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~  703 (913)
T KOG0495|consen  639 DLLAKARSISGT---------ERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEM  703 (913)
T ss_pred             HHHHHHhccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHH
Confidence            888888765433         245777777888888888888888888764      46666788888888888888888


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc
Q 004811          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (729)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (729)
                      |...|...+..        .|.....|..|+.+-...|+.-.|...++++.-.         .|.....|.....+-.+.
T Consensus       704 aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~  766 (913)
T KOG0495|consen  704 AREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRA  766 (913)
T ss_pred             HHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHc
Confidence            88888888877        5777888888888888888888888888887655         444456677777777888


Q ss_pred             chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (729)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (729)
                      |+.+.|.....+|++-+|.. |      .+|..-..+.-.-++-..++.    |++   +...     .+.++..+|..+
T Consensus       767 gn~~~a~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~D----ALk---kce~-----dphVllaia~lf  827 (913)
T KOG0495|consen  767 GNKEQAELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSID----ALK---KCEH-----DPHVLLAIAKLF  827 (913)
T ss_pred             CCHHHHHHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHH----HHH---hccC-----CchhHHHHHHHH
Confidence            88888888888888887766 1      222211111112222222222    222   2211     235778889999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      +...++++|.++|.+++++        +|+..++|..+-..+...|.-++-.+.|.++...
T Consensus       828 w~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  828 WSEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             HHHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            9999999999999999999        8999999999999999999988888888888753

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.2e-17  Score=155.62  Aligned_cols=282  Identities=15%  Similarity=0.138  Sum_probs=233.6

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004811          360 HVQALQFSEAQKFCQMALDIHKDNG--SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (729)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (729)
                      ++..++...|-..+...+++.....  ...-.........+|.+|.++|-+.+|...++.++..       ......+..
T Consensus       189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfll  261 (478)
T KOG1129|consen  189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFLL  261 (478)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHHH
Confidence            4445566666666665555443222  1112222344567999999999999999999988752       223467788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004811          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (729)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (729)
                      |+.+|.+..+...|+..|.+.++.        .|.....+..+|.++..++++++|.++|+.+++.         ++..+
T Consensus       262 LskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~---------~~~nv  324 (478)
T KOG1129|consen  262 LSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL---------HPINV  324 (478)
T ss_pred             HHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc---------CCccc
Confidence            999999999999999999999998        6888899999999999999999999999999998         55556


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      .+...+|.-|+.-++.+-|+.+|++.+++--..       ...++++|.+++..++++-++..|++|+.....     +.
T Consensus       325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~  392 (478)
T KOG1129|consen  325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PG  392 (478)
T ss_pred             eeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cc
Confidence            777788889999999999999999999986555       478899999999999999999999999987543     33


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                      ..+.+|+++|.+....|++.-|..+|+-++..        +++...++.+||.+-.+.|+.++|..++..+-..      
T Consensus       393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~------  458 (478)
T KOG1129|consen  393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV------  458 (478)
T ss_pred             hhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh------
Confidence            45789999999999999999999999999988        8999999999999999999999999999998866      


Q ss_pred             CCChhHHHHHHHHHHH
Q 004811          678 TANPDVDDEKRRLAEL  693 (729)
Q Consensus       678 ~~~p~~~~~~~~La~~  693 (729)
                        .|+..+..++|+.+
T Consensus       459 --~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  459 --MPDMAEVTTNLQFM  472 (478)
T ss_pred             --CccccccccceeEE
Confidence              57777776666544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.77  E-value=1.2e-14  Score=148.15  Aligned_cols=421  Identities=14%  Similarity=0.103  Sum_probs=294.8

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      -..++..+.-.+..++ |.+.+...+..++-+         |+....+...|..+..+|+-++|..+...++..+     
T Consensus         7 E~~lF~~~lk~yE~kQ-YkkgLK~~~~iL~k~---------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-----   71 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQ-YKKGLKLIKQILKKF---------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-----   71 (700)
T ss_pred             HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhC---------CccchhHHhccchhhcccchHHHHHHHHHHhccC-----
Confidence            3467788888888887 888888887777632         4557778889999999999999999999999864     


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (729)
                      ...    -.+|..+|.++....+|++|+.+|+.|+.+        ++++..++..++.+..+.++++-....-.+.++..
T Consensus        72 ~~S----~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~  139 (700)
T KOG1156|consen   72 LKS----HVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR  139 (700)
T ss_pred             ccc----chhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            222    236999999999999999999999999999        79999999999999999999999999988888888


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND--QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (729)
Q Consensus       381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (729)
                      +...        ..|...+..+...|++..|...++..........  .......+......+....|.+++|++.+..-
T Consensus       140 ~~~r--------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  140 PSQR--------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             hhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence            7654        4588999999999999999998887765443111  12233455556677788889888888776654


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH-
Q 004811          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-  537 (729)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-  537 (729)
                      -.-        ..+........|.++..++++++|...|...+..         .|+....+..+-.++..-.+--+++ 
T Consensus       212 e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---------nPdn~~Yy~~l~~~lgk~~d~~~~lk  274 (700)
T KOG1156|consen  212 EKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---------NPDNLDYYEGLEKALGKIKDMLEALK  274 (700)
T ss_pred             hhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---------CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence            332        2333455667799999999999999999999887         4444455555544443222222233 


Q ss_pred             HHHHHHHHHHHhCCCC---------CCcHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHh-CC-
Q 004811          538 KLLQKALKIYNDAPGQ---------QSTVAGIEAQMGVMYYML-------------GNYSDSYDSFKNAISKLRAI-GE-  593 (729)
Q Consensus       538 ~~~~~al~~~~~~~~~---------~~~~~~~~~~la~~~~~~-------------g~~~~A~~~~~~al~~~~~~-~~-  593 (729)
                      ..|...-+.++...-.         .......+...-.-.+..             .+..+ ..++++.+..+... .+ 
T Consensus       275 ~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~  353 (700)
T KOG1156|consen  275 ALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGT  353 (700)
T ss_pred             HHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccc
Confidence            3333322222211000         000000000000000001             11121 12444444333322 11 


Q ss_pred             -----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811          594 -----------RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (729)
Q Consensus       594 -----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (729)
                                 ..+....++++.++.-+...|+++.|..++..|+..        .|...+.+..-|+++...|++++|.
T Consensus       354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa  425 (700)
T KOG1156|consen  354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAA  425 (700)
T ss_pred             cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHH
Confidence                       134556788889999999999999999999999998        8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811          663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (729)
                      .++.++.++-       .++ ..+-..-|.-..+..+.++|. +.+.+.
T Consensus       426 ~~l~ea~elD-------~aD-R~INsKcAKYmLrAn~i~eA~-~~~skF  465 (700)
T KOG1156|consen  426 AWLDEAQELD-------TAD-RAINSKCAKYMLRANEIEEAE-EVLSKF  465 (700)
T ss_pred             HHHHHHHhcc-------chh-HHHHHHHHHHHHHccccHHHH-HHHHHh
Confidence            9999998762       222 222224677777788888887 655443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.77  E-value=4.2e-15  Score=154.51  Aligned_cols=440  Identities=17%  Similarity=0.123  Sum_probs=322.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc
Q 004811          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (729)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (729)
                      +......+.-+. |.++++-+.-..+...+... -.   +.+..|..+.......|+|+.+.+.|++++...        
T Consensus       287 llli~es~i~Re-~~~d~ilslm~~~~k~r~~~-~q---nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--------  353 (799)
T KOG4162|consen  287 LLLIEESLIPRE-NIEDAILSLMLLLRKLRLKK-FQ---NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--------  353 (799)
T ss_pred             HHHHHhhccccc-cHHHHHHHHHHHHHHHHHhh-hc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--------
Confidence            333444444444 57888877665555443321 11   235567778888899999999999999998764        


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET-CRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                       ......|+.++.+|...|.-..|+...+..+...+      .|..... ++.-..++...+.+++++.+..+++.....
T Consensus       354 -~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~  426 (799)
T KOG4162|consen  354 -FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG  426 (799)
T ss_pred             -hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh
Confidence             22344599999999999999999999998887732      1433334 444445566789999999999999996633


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811          383 NGSPASLEEAADRRLMGLICETKG-----------DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (729)
Q Consensus       383 ~~~~~~~~~a~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (729)
                      ..   ....+.++..+|.+|..+-           ...++++.+++|++.      ++....+.+.++.-|..+++.+.|
T Consensus       427 ~~---~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~------d~~dp~~if~lalq~A~~R~l~sA  497 (799)
T KOG4162|consen  427 QR---SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF------DPTDPLVIFYLALQYAEQRQLTSA  497 (799)
T ss_pred             hh---hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHHhHHHH
Confidence            32   2233567888888875442           245666666666542      233336778999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc
Q 004811          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (729)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (729)
                      ..+.++++++       +....+.+|..+|.++...+++.+|+...+.+++-+...         .........+-...+
T Consensus       498 l~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N---------~~l~~~~~~i~~~~~  561 (799)
T KOG4162|consen  498 LDYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN---------HVLMDGKIHIELTFN  561 (799)
T ss_pred             HHHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh---------hhhchhhhhhhhhcc
Confidence            9999999998       345668899999999999999999999999999885432         222333344555589


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----------------
Q 004811          532 ELEQAIKLLQKALKIYNDAPGQQSTVA--GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE----------------  593 (729)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------  593 (729)
                      +.++|+..+...+.++...++......  ......+.+.....+..+|...+.++..+......                
T Consensus       562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~  641 (799)
T KOG4162|consen  562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG  641 (799)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence            999999999999999886544332111  12222334444555667777777776665442111                


Q ss_pred             CC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          594 RK--SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       594 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      +.  .......|...+..+...++.++|..++.++-.+        .|.....|+..|.++...|++++|.+.|..++.+
T Consensus       642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL  713 (799)
T ss_pred             CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence            00  1122346778889999999999999999999999        8999999999999999999999999999999987


Q ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH--HHHHHHhhccc--cCCCcccc
Q 004811          672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ--SLETLLDANSR--VNNDGIEL  725 (729)
Q Consensus       672 ~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~--~l~~al~~~p~--~~~~~l~~  725 (729)
                              +|+...+...||.++.+.|+..-|. .  .+..+++++|.  ..+..+|.
T Consensus       714 --------dP~hv~s~~Ala~~lle~G~~~la~-~~~~L~dalr~dp~n~eaW~~LG~  762 (799)
T KOG4162|consen  714 --------DPDHVPSMTALAELLLELGSPRLAE-KRSLLSDALRLDPLNHEAWYYLGE  762 (799)
T ss_pred             --------CCCCcHHHHHHHHHHHHhCCcchHH-HHHHHHHHHhhCCCCHHHHHHHHH
Confidence                    7888889999999999999998888 7  99999999998  55555543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=4.5e-15  Score=142.98  Aligned_cols=289  Identities=12%  Similarity=0.100  Sum_probs=236.0

Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004811          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (729)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  425 (729)
                      -+.+...+..+|.+++..|++++|+..|+++.-+.+...        ...-..|.++...|+++.-.......+.+.   
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---  296 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------EAMDLYAVLLGQEGGCEQDSALMDYLFAKV---  296 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------hhHHHHHHHHHhccCHhhHHHHHHHHHhhh---
Confidence            477888999999999999999999999999998876654        346667888888999987766655444321   


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                         ...+.-|+.-+...+...++..|+.+-+++++.        ++....++...|.++...++.++|+-.|+.|..+  
T Consensus       297 ---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--  363 (564)
T KOG1174|consen  297 ---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--  363 (564)
T ss_pred             ---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence               122334555677788899999999999999998        7888899999999999999999999999999998  


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH-HHHHH-cCCHHHHHHHHHH
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG-VMYYM-LGNYSDSYDSFKN  583 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~  583 (729)
                             .|....+|..|..+|...|++.+|......++..++..       +.++..+| .+++. -.--++|.+++++
T Consensus       364 -------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  364 -------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             -------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence                   55668899999999999999999999999999998876       45555564 33332 3345789999999


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      ++.+        .+.+..+-..+|.++...|.++.++.++++++..        .++.. .+..||.++...+.+++|.+
T Consensus       430 ~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~~-LH~~Lgd~~~A~Ne~Q~am~  492 (564)
T KOG1174|consen  430 SLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDVN-LHNHLGDIMRAQNEPQKAME  492 (564)
T ss_pred             hhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------ccccH-HHHHHHHHHHHhhhHHHHHH
Confidence            9886        2335667788999999999999999999999998        55544 78899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (729)
                      +|..|+.+        +|..-.++..|-.+-...
T Consensus       493 ~y~~ALr~--------dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  493 YYYKALRQ--------DPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHHhc--------CccchHHHHHHHHHHhcc
Confidence            99999987        687777776665554433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.74  E-value=1.5e-17  Score=167.04  Aligned_cols=266  Identities=20%  Similarity=0.161  Sum_probs=114.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (729)
                      .+|.+++..|++++|++++.+.+....   ++.    ....|..+|.+....++++.|+..|++++..        ++..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~----~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~   77 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPD----DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc---ccc----ccccccccccccccccccccccccccccccc--------cccc
Confidence            569999999999999999976654320   011    2245788999999999999999999999887        4555


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      ...+..++.+ ...+++++|+.++.++.+..+..         ..+..+..++...++++++...+.++..    ....+
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~  143 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAP  143 (280)
T ss_dssp             --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred             cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCC
Confidence            6667777777 68999999999999887765322         2356677788999999999999988653    22234


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      .....+..+|.++...|++++|+..|+++++.        .|....+...++.++...|+++++...+.........   
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---  212 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---  212 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---
Confidence            55678899999999999999999999999999        7888899999999999999999988888887777322   


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                            ....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|..++.+++...
T Consensus       213 ------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  213 ------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             ------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred             ------HHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence                  23457788999999999999999999999887665       4677899999999999999999999988754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.74  E-value=2e-17  Score=166.10  Aligned_cols=266  Identities=23%  Similarity=0.251  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (729)
Q Consensus       396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (729)
                      ..+|.+++..|++++|++.+.+.+...    .++.....|..+|.+....++++.|+..|++++..        .+....
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~   79 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKI----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQ   79 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc--------cccccc
Confidence            366999999999999999996654321    13444577788999999999999999999999987        455666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (729)
                      .+..++.+ ...+++++|+.+++++.+...       .   ...+..+..++...++++++...++++.....     ..
T Consensus        80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-------~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~  143 (280)
T PF13429_consen   80 DYERLIQL-LQDGDPEEALKLAEKAYERDG-------D---PRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----AP  143 (280)
T ss_dssp             -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred             cccccccc-ccccccccccccccccccccc-------c---cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence            77788888 789999999999988876521       1   23455667788999999999999999774221     11


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      .-..++..+|.++...|++++|+.+|++++++.        +....++..++.++...|+++++.+.+......      
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------  209 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKA------  209 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------
Confidence            235678899999999999999999999999973        224567888999999999999988888887776      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                        .|.....+..+|.+|..+|++++|+.+|++++..        +|..+.++..+|.++...|+.++|. ..+++++..
T Consensus       210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~  277 (280)
T PF13429_consen  210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRL  277 (280)
T ss_dssp             ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred             --CcCHHHHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccc-ccccccccc
Confidence              3444457788999999999999999999999976        6888999999999999999999999 988887753

>PRK12370 invasion protein regulator; Provisional

Probab=99.73  E-value=3.3e-15  Score=163.89  Aligned_cols=254  Identities=14%  Similarity=0.034  Sum_probs=202.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004811          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (729)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (729)
                      +++++|+.+|++++.+      +|..+.++..+|.++...         +++++|+..+++++++        +|....+
T Consensus       275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a  340 (553)
T PRK12370        275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA  340 (553)
T ss_pred             HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence            4578999999999753      566677888888877643         3489999999999998        7888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004811          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (729)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (729)
                      +..+|.++...|++++|+..|++++++         .|....+++.+|.++...|++++|+..+++++++.|...     
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----  406 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----  406 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence            999999999999999999999999999         445567899999999999999999999999999976642     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (729)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (729)
                        ..+..++.+++..|++++|+..+++++...       ++.....+..+|.++...|++++|...+.+....       
T Consensus       407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-------  470 (553)
T PRK12370        407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-------  470 (553)
T ss_pred             --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence              233445666778999999999999987642       1223457888999999999999999999887666       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                       .|....+...++..|...|  ++|...+++.++.....  +.++      ..++.+|.-.|+.+.+. .+ +++.+.+.
T Consensus       471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~-~~-~~~~~~~~  537 (553)
T PRK12370        471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEK-MW-NKFKNEDN  537 (553)
T ss_pred             -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHH-HH-HHhhccch
Confidence             6777778889999999888  48888888876654321  1122      23788888899988887 55 66655443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.73  E-value=2.2e-14  Score=135.93  Aligned_cols=345  Identities=15%  Similarity=0.153  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004811          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (729)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (729)
                      .-....|..++...+ +.+|+..+.+.+.-....      ......+-.+..+...+|.|++++.+--..+.....   .
T Consensus         7 k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~---~   76 (518)
T KOG1941|consen    7 KKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE---L   76 (518)
T ss_pred             HHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH---H
Confidence            345677888899987 999999999988776443      334556677788889999999988877666655422   3


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (729)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (729)
                      ++......++.+++..+....++.+++.+-...+.+-    |... ..-......++.++.-++.|+++++.|+.|+++.
T Consensus        77 ~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A  152 (518)
T KOG1941|consen   77 EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYA  152 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            3344567789999999999999999998877766651    1111 1234566778999999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (729)
Q Consensus       381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (729)
                      ..+.++  ..+..++..||.++....|+++|+-+..+|..+....+..    .....+++.++..+..+|+.-.|.++.+
T Consensus       153 ~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~  230 (518)
T KOG1941|consen  153 HNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCE  230 (518)
T ss_pred             hccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            888765  4445678899999999999999999999999888766522    2345678889999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHH-
Q 004811          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ-  535 (729)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-  535 (729)
                      ++.++.-..+  |.+..+..+..+|.+|...|+.+.|..-|+.|+.......   +......++...|.++....-..+ 
T Consensus       231 Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g---drmgqv~al~g~Akc~~~~r~~~k~  305 (518)
T KOG1941|consen  231 EAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG---DRMGQVEALDGAAKCLETLRLQNKI  305 (518)
T ss_pred             HHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999988776  5788889999999999999999999999999999877642   344556777778888776655555 


Q ss_pred             ----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          536 ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       536 ----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                          |+++-.+++++.... |....+..+...++.+|..+|.-++-...+.++-+..
T Consensus       306 ~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  306 CNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             cccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence                999999999998887 7777777888999999999998888877777766553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.73  E-value=6.2e-15  Score=156.48  Aligned_cols=437  Identities=15%  Similarity=0.085  Sum_probs=298.6

Q ss_pred             cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (729)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  289 (729)
                      +......+|..+.++-.+|..|....+ ...|..+|.+|.++-         +..+.+...++..|....+++.|.....
T Consensus       481 li~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  481 LIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD---------ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            344455566666666666666655554 566666666665541         2234455556666666666666666644


Q ss_pred             HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (729)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (729)
                      .+-+...       .......|..+|..|...+++..|+..|+.++..        +|....+|..+|.+|...|++..|
T Consensus       551 ~~~qka~-------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~A  615 (1238)
T KOG1127|consen  551 RAAQKAP-------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHA  615 (1238)
T ss_pred             HHhhhch-------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehH
Confidence            4333221       1122334667889999999999999999999988        899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHcCCH
Q 004811          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSLSRY  448 (729)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~  448 (729)
                      ++.|.++..+.|...        ...+..+.+....|.|.+|+..+...+...... .-....+.++..++..+...|=+
T Consensus       616 lKvF~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~  687 (1238)
T KOG1127|consen  616 LKVFTKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ  687 (1238)
T ss_pred             HHhhhhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999998887653        457788999999999999999998877544322 12345677788888888888989


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C--------------------CH------HHHHHHHHH
Q 004811          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT---G--------------------KL------RESKSYCEN  499 (729)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g--------------------~~------~~A~~~~~~  499 (729)
                      .+|..+++++++.+.-............|..++....-.   .                    ..      --|.+++-.
T Consensus       688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~  767 (1238)
T KOG1127|consen  688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA  767 (1238)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence            999999999988776544222122223333333322211   1                    00      012222222


Q ss_pred             HHHHHhcCCCCCChHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc
Q 004811          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML  571 (729)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~  571 (729)
                      .+.+.          .....|++||.-|+.        +.+...|+.++.+++++..+.       ...|+.||.+ ...
T Consensus       768 hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-sg~  829 (1238)
T KOG1127|consen  768 HLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-SGI  829 (1238)
T ss_pred             HHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-hcc
Confidence            22221          124567888887766        234457999999999998766       3567778877 566


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (729)
Q Consensus       572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (729)
                      |++.-|..+|-+++...        +.....|.++|.++....+++.|...|.++..+        +|.....|...+.+
T Consensus       830 gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali  893 (1238)
T KOG1127|consen  830 GNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALI  893 (1238)
T ss_pred             chhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHh
Confidence            88888888888877652        224567888888888888888888888888887        78777777777777


Q ss_pred             HHHcCChHHHHHHHHHHHHHHH-----------------------------------------HHcCCCChhHHHHHHHH
Q 004811          652 YDAIGRLDDAIEILEFVVGIRE-----------------------------------------EKLGTANPDVDDEKRRL  690 (729)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~~-----------------------------------------~~~g~~~p~~~~~~~~L  690 (729)
                      ....|+.-++...|...-.+..                                         ..+=..+|+...++...
T Consensus       894 ~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~  973 (1238)
T KOG1127|consen  894 PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAAN  973 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHH
Confidence            7777766666666655211110                                         01113578888888889


Q ss_pred             HHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          691 AELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       691 a~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      |.++..++.+++|. ....+++.+
T Consensus       974 gstlEhL~ey~~a~-ela~Rligl  996 (1238)
T KOG1127|consen  974 GSTLEHLEEYRAAL-ELATRLIGL  996 (1238)
T ss_pred             HhHHHHHHHHHHHH-HHHHHHHHH
Confidence            99999999999888 776666544

>PRK12370 invasion protein regulator; Provisional

Probab=99.72  E-value=2.1e-15  Score=165.41  Aligned_cols=263  Identities=11%  Similarity=-0.030  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc---------CChHHHHHHHHHhc
Q 004811          224 LLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQSI  292 (729)
Q Consensus       224 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al  292 (729)
                      ++.+|...+...  +.+++|+.+|++|+++.         |..+.++..+|.+|...         +++++|+..+++++
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            445555444332  22678888888888753         45577788888887644         34899999999999


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004811          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF  372 (729)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  372 (729)
                      ++.     ++++.    ++..+|.++...|++++|+.+|++++++        +|....+++.+|.++...|++++|+..
T Consensus       332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            986     44443    4888999999999999999999999999        799999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811          373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (729)
Q Consensus       373 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (729)
                      +++++++.|...        ..+..++.+++..|++++|+..+++++..     ..+.....+..+|.++..+|++++|.
T Consensus       395 ~~~Al~l~P~~~--------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~  461 (553)
T PRK12370        395 INECLKLDPTRA--------AAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELAR  461 (553)
T ss_pred             HHHHHhcCCCCh--------hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence            999999987643        22445566677789999999999887642     12444567788999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004811          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (729)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (729)
                      ..+.+....        .|....++..++..|...|  ++|...+++.++.....         ..-...++.+|.-.|+
T Consensus       462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~  522 (553)
T PRK12370        462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE  522 (553)
T ss_pred             HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence            999887665        6777778888898888888  48888888877764431         1112236777788888


Q ss_pred             HHHHHHHHHHHHH
Q 004811          533 LEQAIKLLQKALK  545 (729)
Q Consensus       533 ~~~A~~~~~~al~  545 (729)
                      -+.+..+ +++.+
T Consensus       523 ~~~~~~~-~~~~~  534 (553)
T PRK12370        523 AIAEKMW-NKFKN  534 (553)
T ss_pred             hHHHHHH-HHhhc
Confidence            8777766 55443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.72  E-value=2.4e-14  Score=135.70  Aligned_cols=345  Identities=16%  Similarity=0.121  Sum_probs=275.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (729)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (729)
                      ...-|.-++...++++|+..+.+.+...      ++....+..+-.+..+...+|.|++++.+--..+..+...  ++..
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~   80 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKL------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSD   80 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            3445677788889999999999888763      2223456667788889999999999988766666665443  1224


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (729)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (729)
                      ...+++.+++..+....+|.+++.+.+..+.+-........   ......+|..+..++.++++++.|+.|+.+...+++
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~---gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D  157 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG---GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD  157 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc---chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence            56688999999999999999999998888776433322111   245677999999999999999999999999999988


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      ......++..||.+|....++++|+-+..+|.++.+...-.+  ......+++.++..+..+|+...|.++.+++.++.-
T Consensus       158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999987765322  234566788999999999999999999999999977


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHH
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-----SYDS  580 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~  580 (729)
                      ..   .+.+..+..+.-+|.+|...|+.+.|..-|++|..+.... |+.-....++...+.++....-..+     |+++
T Consensus       238 ~~---Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~  313 (518)
T KOG1941|consen  238 QH---GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF  313 (518)
T ss_pred             Hh---CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence            63   3566778889999999999999999999999999988766 6555555666677777766554444     9999


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      -.+++++...++.+.  ....+...++.+|..+|.-++=...+.++-+.
T Consensus       314 n~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  314 NTRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            999999999888764  34567888999999999888777777776554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.72  E-value=1.4e-15  Score=136.25  Aligned_cols=209  Identities=17%  Similarity=0.135  Sum_probs=184.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      ......+...||.-|+..|++..|...+++|++.         +|....+|..+|.+|...|+.+.|.+.|++|+.+.++
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~  101 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN  101 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence            3455678899999999999999999999999999         6667889999999999999999999999999999887


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .       ..++++.|..++.+|++++|..+|++|+..      +.-.....++.++|.|..+.|+++.|.++|++++++
T Consensus       102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             c-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            7       578899999999999999999999999873      222234678999999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE  709 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  709 (729)
                              +|....+...++......|++..|..++++....        -+-.+..+....++-...|+...+. .+=.
T Consensus       169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~-~Y~~  231 (250)
T COG3063         169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQ-RYQA  231 (250)
T ss_pred             --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence                    8998899999999999999999999999987754        2355667777788888999999988 7777


Q ss_pred             HHHhhccc
Q 004811          710 TLLDANSR  717 (729)
Q Consensus       710 ~al~~~p~  717 (729)
                      ++-...|.
T Consensus       232 qL~r~fP~  239 (250)
T COG3063         232 QLQRLFPY  239 (250)
T ss_pred             HHHHhCCC
Confidence            78888887

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=3.7e-14  Score=149.94  Aligned_cols=314  Identities=14%  Similarity=0.084  Sum_probs=228.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      +......|.+....|+++.|.+.+.++.+..+..        ...+...|.++...|+++.|..++.++.+..   ++..
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~--------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~  152 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP--------VLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDN  152 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCc
Confidence            3445666778888999999999998887765332        2446778999999999999999999886422   1211


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                        ..+....+.++...|++++|...+++.++.        .|....++..++.++...|++++|...+.+.++...    
T Consensus       153 --l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~----  218 (409)
T TIGR00540       153 --ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL----  218 (409)
T ss_pred             --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----
Confidence              123444589999999999999999999988        788889999999999999999999999998887621    


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                       .+.............-+...+..+++...+.++....+..   ......++..++..+...|++++|...++++++...
T Consensus       219 -~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p  294 (409)
T TIGR00540       219 -FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG  294 (409)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence             1122222222222222234445555556666666655432   111246778899999999999999999999998632


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNLAGTYDAIGRLDDAIEILEF  667 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~  667 (729)
                      .     ..... ............++...+++.++++++.        +|+..  ..+..+|.++.+.|++++|.++|++
T Consensus       295 d-----~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~  360 (409)
T TIGR00540       295 D-----DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKN  360 (409)
T ss_pred             C-----cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            1     11000 0122233334468889999999999988        77777  7888999999999999999999995


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       668 al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      +..+      ..+|+... +..||.++...|+.++|. +++++++..
T Consensus       361 a~a~------~~~p~~~~-~~~La~ll~~~g~~~~A~-~~~~~~l~~  399 (409)
T TIGR00540       361 VAAC------KEQLDAND-LAMAADAFDQAGDKAEAA-AMRQDSLGL  399 (409)
T ss_pred             hHHh------hcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence            4332      11566555 559999999999999999 999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=5.9e-13  Score=130.77  Aligned_cols=432  Identities=15%  Similarity=0.090  Sum_probs=299.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      -....|...|.--..+++ +..|...|++||..-         ......+...+.+-++......|..++.+|+.+.+. 
T Consensus        71 ~~~~~WikYaqwEesq~e-~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-  139 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKE-IQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-  139 (677)
T ss_pred             HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-
Confidence            344455566655555554 666666666666531         122445667788888888888888888888877521 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (729)
                              .-..|+....+-..+|+..-|.+.|++-++.        .|+. .+|......-......+.|...|++.+-
T Consensus       140 --------VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~  202 (677)
T KOG1915|consen  140 --------VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVL  202 (677)
T ss_pred             --------HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence                    1123666666667788888888888888777        3433 5666666666667777788888777766


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (729)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (729)
                      ..|+.         ..|...+..-...|+...|...|.+|+..+.   ++......+...|..-..+..++.|...|+-|
T Consensus       203 ~HP~v---------~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA  270 (677)
T KOG1915|consen  203 VHPKV---------SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYA  270 (677)
T ss_pred             ecccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443         4467777777777888888888877765432   23334444555555556666666666666655


Q ss_pred             HHHH---------------HHhcC---------------------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          459 LTAF---------------KTNKG---------------------ENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (729)
Q Consensus       459 l~~~---------------~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (729)
                      ++..               ++.+|                     .++|.+-.+|+..-.+-...|+.+.-.+.|++|+.
T Consensus       271 ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa  350 (677)
T KOG1915|consen  271 LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA  350 (677)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence            5431               11111                     12566667888888888888999999999999987


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          503 IYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (729)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (729)
                      -................|.+.+.. -....+.+.+.+.|+.++++.|..   ..+.+.+|...|.....+.+...|.+.+
T Consensus       351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiL  427 (677)
T KOG1915|consen  351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKIL  427 (677)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            632211000011122233333321 234678999999999999987643   4577888999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004811          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA  661 (729)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  661 (729)
                      -.|+..+++         ..++.....+-.++++++....+|++-++.        .|....+|...|.+-..+|+.+.|
T Consensus       428 G~AIG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRa  490 (677)
T KOG1915|consen  428 GNAIGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRA  490 (677)
T ss_pred             HHHhccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHH
Confidence            999877543         234455566777889999999999999998        899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...|+-|+..-.    -+-|.  ..+......-...|.++.|. ..|+.+|+..+.
T Consensus       491 RaifelAi~qp~----ldmpe--llwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h  539 (677)
T KOG1915|consen  491 RAIFELAISQPA----LDMPE--LLWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH  539 (677)
T ss_pred             HHHHHHHhcCcc----cccHH--HHHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence            999999886310    11122  23444556667889999999 999999998876

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=1.4e-14  Score=153.13  Aligned_cols=318  Identities=13%  Similarity=0.039  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      +...+..|...+..|+ ++.|.+.+.++.+..       +.|  ...+...|.++..+|+++.|..+|.++.+..     
T Consensus        84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~-------~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----  148 (409)
T TIGR00540        84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHA-------AEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----  148 (409)
T ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcC-------CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            3455678888888997 999999888876642       222  3446677999999999999999999997654     


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (729)
                      ++..   +.+....+.++...|++++|...+++.++.        .|....++..++.++...|++++|...+.+.++..
T Consensus       149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            2221   112445699999999999999999999988        68888999999999999999999999999888763


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (729)
Q Consensus       381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (729)
                      ....    ............-....+..+++.+.+..+.....  ...+.....+..++..+...|++++|+..++++++
T Consensus       218 ~~~~----~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       218 LFDD----EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             CCCH----HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence            2111    10111111222222333444444455554443211  11223467788899999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHH
Q 004811          461 AFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (729)
Q Consensus       461 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (729)
                      .        .|+....  ...........++...++..++++++..      .+++. ...+..+|.++...|++++|.+
T Consensus       292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~------p~~~~-~~ll~sLg~l~~~~~~~~~A~~  356 (409)
T TIGR00540       292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV------DDKPK-CCINRALGQLLMKHGEFIEAAD  356 (409)
T ss_pred             h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC------CCChh-HHHHHHHHHHHHHcccHHHHHH
Confidence            7        3443321  1222333344578889999999998872      22332 3678899999999999999999


Q ss_pred             HHHH--HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          539 LLQK--ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       539 ~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      +|++  +++..++.        ..+..+|.++...|+.++|..+|++++...-.+++
T Consensus       357 ~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~  405 (409)
T TIGR00540       357 AFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD  405 (409)
T ss_pred             HHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence            9995  55543332        34568999999999999999999999887655443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.72  E-value=2.7e-15  Score=146.85  Aligned_cols=208  Identities=20%  Similarity=0.223  Sum_probs=177.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .......+..+|.++...|++++|+..+++++..         .|....++..+|.++...|++++|+.++++++...+.
T Consensus        27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~   97 (234)
T TIGR02521        27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH---------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN   97 (234)
T ss_pred             CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4456788999999999999999999999999987         3334678889999999999999999999999988654


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .       ..++..+|.++...|++++|+.+|++++....      .......+..+|.++...|++++|..+|.+++..
T Consensus        98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3       35778999999999999999999999987421      1123457888999999999999999999999998


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE  709 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  709 (729)
                              .|....++..+|.++...|++++|+.++++++.+        .|.....+..++.++...|+.++|. ...+
T Consensus       165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~  227 (234)
T TIGR02521       165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQ-RYGA  227 (234)
T ss_pred             --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence                    6777778999999999999999999999999876        2445666778899999999999999 8888


Q ss_pred             HHHhhcc
Q 004811          710 TLLDANS  716 (729)
Q Consensus       710 ~al~~~p  716 (729)
                      .+....|
T Consensus       228 ~~~~~~~  234 (234)
T TIGR02521       228 QLQKLFP  234 (234)
T ss_pred             HHHhhCc
Confidence            8776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.72  E-value=2.9e-13  Score=138.28  Aligned_cols=443  Identities=17%  Similarity=0.159  Sum_probs=308.6

Q ss_pred             cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (729)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  289 (729)
                      ........|+.+..+-..|..+...|+ -++|..+...+++.         ++....||+.+|.++....+|++|+.+|+
T Consensus        30 ~~~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~---------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~   99 (700)
T KOG1156|consen   30 IKQILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRN---------DLKSHVCWHVLGLLQRSDKKYDEAIKCYR   99 (700)
T ss_pred             HHHHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhcc---------CcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence            344455788888999999999999998 89999998888863         24457899999999999999999999999


Q ss_pred             HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (729)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (729)
                      .|+.+.     +++    ..+|..++....++++++-....-.+.+++        .|.....|..+|..+...|++..|
T Consensus       100 nAl~~~-----~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen  100 NALKIE-----KDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HHHhcC-----CCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999986     333    345899999999999999999988888888        688889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH
Q 004811          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD  449 (729)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  449 (729)
                      ....+...................+......+....|.+++|++.+..-..      ...+........|.++..+++++
T Consensus       163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~e~ka~l~~kl~~lE  236 (700)
T KOG1156|consen  163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFEETKADLLMKLGQLE  236 (700)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHhhhHHHHHHHHhhHH
Confidence            999988877665444444455566777778888899999999988764321      22233345566789999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCC----------CCCChHHHHH
Q 004811          450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPV----------PGVPPEEIAS  518 (729)
Q Consensus       450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~----------~~~~~~~~~~  518 (729)
                      +|...|...+..        +|++...+..+-.++...-+.-+++ ..|...-+.+....          .+..-+....
T Consensus       237 eA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vd  308 (700)
T KOG1156|consen  237 EAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVD  308 (700)
T ss_pred             hHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHH
Confidence            999999999987        7888877777777775322333333 44433333222110          0101111111


Q ss_pred             HH-------------HHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--------------CCCCcHHHHHHHHHHHHHHc
Q 004811          519 GL-------------TDVSSIYESMNELEQAIKLLQKALKIYNDAP--------------GQQSTVAGIEAQMGVMYYML  571 (729)
Q Consensus       519 ~~-------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~la~~~~~~  571 (729)
                      -+             ..+-.+|.   +.... ..+++.+..+....              ..+..+.+.++.++.-+...
T Consensus       309 kyL~~~l~Kg~p~vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~  384 (700)
T KOG1156|consen  309 KYLRPLLSKGVPSVFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL  384 (700)
T ss_pred             HHHHHHhhcCCCchhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence            11             11111111   11111 13444333332211              12346677888999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (729)
Q Consensus       572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (729)
                      |+++.|..+++.|+.-        .+.....+...|+++...|++++|..++.++.++        +-....+-..-|..
T Consensus       385 g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D~aDR~INsKcAKY  448 (700)
T KOG1156|consen  385 GDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------DTADRAINSKCAKY  448 (700)
T ss_pred             ccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cchhHHHHHHHHHH
Confidence            9999999999999874        4557788889999999999999999999999987        32222233467888


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          652 YDAIGRLDDAIEILEFVVGIREEKLGT-ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~~~~~g~-~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      ..+..+.++|.+...+.-.-.....+. ..-........-|..|.++|++..|+ +-|..+-..
T Consensus       449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~k~  511 (700)
T KOG1156|consen  449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIEKH  511 (700)
T ss_pred             HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHHHH
Confidence            889999999988876554321100000 01111222234478889999998888 655544433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.71  E-value=2.2e-15  Score=151.34  Aligned_cols=247  Identities=16%  Similarity=0.125  Sum_probs=179.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (729)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (729)
                      +..+.++..+.+++...  .-++...+..++.+|.+|...|++++|+..|++++++        .|....++..+|.++.
T Consensus        40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~  109 (296)
T PRK11189         40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLT  109 (296)
T ss_pred             hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence            45677777777766322  1234455788999999999999999999999999998        7888999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004811          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (729)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (729)
                      ..|++++|+..|++++++         .|....++.++|.++...|++++|+..|++++++.+..+     ....+   .
T Consensus       110 ~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~---~  172 (296)
T PRK11189        110 QAGNFDAAYEAFDSVLEL---------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRALW---L  172 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH---H
Confidence            999999999999999998         444567899999999999999999999999999876542     11111   2


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (729)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (729)
                      .+....+++++|+..|.+++...    ..  .    .|. .+.++...|++.++ ..++.+.+.+..... -.|....+|
T Consensus       173 ~l~~~~~~~~~A~~~l~~~~~~~----~~--~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~-l~~~~~ea~  239 (296)
T PRK11189        173 YLAESKLDPKQAKENLKQRYEKL----DK--E----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTE-LAERLCETY  239 (296)
T ss_pred             HHHHccCCHHHHHHHHHHHHhhC----Cc--c----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHH-HHHHHHHHH
Confidence            23455788999999998766431    11  1    111 34555556665443 233333321110000 045667899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                      +.+|.++..+|++++|+.+|++++.+.       .|+.....+.+.++....++
T Consensus       240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~-------~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        240 FYLAKYYLSLGDLDEAAALFKLALANN-------VYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999862       24666666666665554443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.71  E-value=3.1e-15  Score=134.00  Aligned_cols=208  Identities=17%  Similarity=0.156  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                      ....+...||.-|...|++..|...+++||+.        +|....+|..+|.+|...|+.+.|.+.|++|+.+.|++++
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd  104 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD  104 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence            44567889999999999999999999999999        8999999999999999999999999999999999998874


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (729)
Q Consensus       386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (729)
                              ++++.|..++.+|++++|...|++|+.    .+..+....++.++|.|..+.|+++.|..+|++++++    
T Consensus       105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~----  168 (250)
T COG3063         105 --------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL----  168 (250)
T ss_pred             --------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----
Confidence                    599999999999999999999999975    4556677889999999999999999999999999999    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (729)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (729)
                          +|........++..++..|+|..|..++++......         ..+..+.....+-...|+-+.|-.+-.+...
T Consensus       169 ----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         169 ----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             ----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                788889999999999999999999999988776621         2355666666777888999988888777777


Q ss_pred             HHHhC
Q 004811          546 IYNDA  550 (729)
Q Consensus       546 ~~~~~  550 (729)
                      .+|..
T Consensus       236 ~fP~s  240 (250)
T COG3063         236 LFPYS  240 (250)
T ss_pred             hCCCc
Confidence            76654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.70  E-value=1.9e-14  Score=152.78  Aligned_cols=374  Identities=14%  Similarity=0.106  Sum_probs=282.4

Q ss_pred             cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004811          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (729)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (729)
                      ..+...|+..|-+++++.     +    ....++..||.+|....+...|..+|++|.++        ++..+.+....+
T Consensus       471 rK~~~~al~ali~alrld-----~----~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a  533 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLD-----V----SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA  533 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcc-----c----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence            445788999999999886     2    23446889999999998999999999999999        888999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004811          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (729)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (729)
                      ..|....+++.|...+..+-+..+...      ....|..+|..|...+++..|+..|+.+++      .+|....+|..
T Consensus       534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR------~dPkD~n~W~g  601 (1238)
T KOG1127|consen  534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALR------TDPKDYNLWLG  601 (1238)
T ss_pred             HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhc------CCchhHHHHHH
Confidence            999999999999998655555443322      123466699999999999999999999875      47778899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004811          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (729)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (729)
                      +|.+|...|++..|++.|.++..+        +|......+..+.+....|+|.+|+..+...+..+..-..  .....+
T Consensus       602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLa  671 (1238)
T KOG1127|consen  602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLA  671 (1238)
T ss_pred             HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHH
Confidence            999999999999999999999998        8988899999999999999999999999998877544211  123457


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH-----------------------cCC
Q 004811          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM-----------------------LGN  573 (729)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~-----------------------~g~  573 (729)
                      .++..++..+...|-+..|..+++++++.+.-..... ......|..++.++.-                       ++.
T Consensus       672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~  751 (1238)
T KOG1127|consen  672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA  751 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence            7788888888888888889999988887765332211 1111112222221111                       111


Q ss_pred             H------HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          574 Y------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--------RYSINEAVELFEEARSILEQECGPYHP  639 (729)
Q Consensus       574 ~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (729)
                      .      --|.+++-..+.+..         .+..|+++|.-|++        +.+...|+.++.+++.+        ..
T Consensus       752 l~~~d~l~Lg~~c~~~hlsl~~---------~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--------~a  814 (1238)
T KOG1127|consen  752 LKKNDLLFLGYECGIAHLSLAI---------HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--------CA  814 (1238)
T ss_pred             CcchhHHHHHHHHhhHHHHHhh---------ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--------hh
Confidence            0      112233333332211         13467888877765        22345899999999998        56


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .....|..||.+ ...|++.-|..+|-+.+..        .|.....|.++|.++....+++-|. ..|..+..++|.
T Consensus       815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~-~af~~~qSLdP~  882 (1238)
T KOG1127|consen  815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAE-PAFSSVQSLDPL  882 (1238)
T ss_pred             ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhh-HHHHhhhhcCch
Confidence            666678888877 6668888888888888765        5778888889999998889999888 889988888887

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=8.9e-13  Score=133.40  Aligned_cols=429  Identities=13%  Similarity=0.111  Sum_probs=270.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004811          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (729)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (729)
                      ..++...+.+...++ |++|+....+.+.+.         |+...+++.--.+..+.++|++|+.+.+.-....     .
T Consensus        13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~   77 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGE-YEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V   77 (652)
T ss_pred             HHHHHHHHHhccchH-HHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence            456666677778887 888887777777653         3345567777788899999999997666544321     0


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (729)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (729)
                           .....+..|.|.++++..++|+..++-+           ++....++...|.+++++|+|++|+..|+..++...
T Consensus        78 -----~~~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   78 -----INSFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             -----cchhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence                 1111368899999999999999998821           233345677789999999999999999998876543


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (729)
Q Consensus       382 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (729)
                      +..+.     -...+.++..-...++             .....+. .......+++.|.++...|+|.+|++.+++++.
T Consensus       142 dd~d~-----~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  142 DDQDE-----ERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             chHHH-----HHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            33211     1111122211111111             1111222 233567889999999999999999999999999


Q ss_pred             HHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH
Q 004811          461 AFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (729)
Q Consensus       461 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (729)
                      ++++....++       .....+...|+.++..+|+..+|...|...+.....     +.+..+.+-++|..+-....-+
T Consensus       204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~  278 (652)
T KOG2376|consen  204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF  278 (652)
T ss_pred             HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence            9887764332       235567888999999999999999999998876322     2333444444443221111111


Q ss_pred             H---------------------------HHH-----------HHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCH
Q 004811          534 E---------------------------QAI-----------KLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNY  574 (729)
Q Consensus       534 ~---------------------------~A~-----------~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~  574 (729)
                      +                           +++           .--.++.++....++..+ ....++..-+. ......+
T Consensus       279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t-~~~~~~~  357 (652)
T KOG2376|consen  279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEAT-KVREKKH  357 (652)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHH-HHHHHHH
Confidence            1                           000           000112222222222221 11111111111 1111133


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHH
Q 004811          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG--PYHPDTLGVYSNLAGTY  652 (729)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~  652 (729)
                      .+|..+       +....+.++.....+...++.+...+|+++.|++.+...+........  ...|.   +-..+-.+|
T Consensus       358 ~ka~e~-------L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~  427 (652)
T KOG2376|consen  358 KKAIEL-------LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG---TVGAIVALY  427 (652)
T ss_pred             hhhHHH-------HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHH
Confidence            333333       333334444444567788899999999999999999955533222111  11333   334555667


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          653 DAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       653 ~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...++.+-|...+..|+..++...... +.....+..++.+-.+.|+.++|. ..|+++++.+|.
T Consensus       428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~  490 (652)
T KOG2376|consen  428 YKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPN  490 (652)
T ss_pred             HhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCc
Confidence            888888889999999998887665433 666677778888888899999999 999999998887

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=9.2e-15  Score=143.07  Aligned_cols=207  Identities=15%  Similarity=0.124  Sum_probs=172.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      +.......+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++...  
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--   95 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--   95 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence            34455778899999999999999999999999887        67778899999999999999999999999999883  


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                             +....++..+|.++...|++++|+.++++++....     .......+..+|.++...|++++|..+|.+++.
T Consensus        96 -------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        96 -------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             -------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                   22345788999999999999999999999987421     122245677899999999999999999999988


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      ..+        ....++..+|.++...|++++|..++++++..        .|.....+..++.++...|+.++|..+.+
T Consensus       164 ~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       164 IDP--------QRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             hCc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            621        12457888999999999999999999999887        45556677788999999999999999887


Q ss_pred             HHHHH
Q 004811          667 FVVGI  671 (729)
Q Consensus       667 ~al~~  671 (729)
                      .+...
T Consensus       228 ~~~~~  232 (234)
T TIGR02521       228 QLQKL  232 (234)
T ss_pred             HHHhh
Confidence            76543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.69  E-value=1.9e-13  Score=128.23  Aligned_cols=283  Identities=13%  Similarity=0.150  Sum_probs=226.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--ChhHHH
Q 004811          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ--DAEVAS  433 (729)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~  433 (729)
                      -|.-+.-..+.++|+..|...++..+...        .+...||.+|...|..+.|+...+..+.    .++  ......
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~--------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----spdlT~~qr~l  108 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQEDPETF--------EAHLTLGNLFRSRGEVDRAIRIHQTLLE----SPDLTFEQRLL  108 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHhcCchhh--------HHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCCchHHHHH
Confidence            45555667889999999999998665543        5689999999999999999998865432    122  234466


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      ++..||.-|+..|-++.|...|....+.        ......++..|..+|....+|++|+...++...+-.+    ...
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~  176 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYR  176 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cch
Confidence            7889999999999999999999988775        3445678889999999999999999999988887433    345


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      ..++..|..||..+....+.+.|+..+.+|++..++.       ..+-..+|.++...|+|+.|++.++.+++.      
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------  243 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC-------VRASIILGRVELAKGDYQKAVEALERVLEQ------  243 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-------eehhhhhhHHHHhccchHHHHHHHHHHHHh------
Confidence            6788999999999999999999999999999987766       355567899999999999999999988875      


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                       ++.+.+.++..|..+|..+|+.++.+..+.++.+.        .+. ..+...++..-....-.+.|..++.+-+..  
T Consensus       244 -n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--  311 (389)
T COG2956         244 -NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRR--  311 (389)
T ss_pred             -ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence             45678889999999999999999999999999887        332 234556677777777778888877776643  


Q ss_pred             HHcCCCChhHHHHHHHHHHHH
Q 004811          674 EKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~  694 (729)
                            +|.... .++|....
T Consensus       312 ------~Pt~~g-f~rl~~~~  325 (389)
T COG2956         312 ------KPTMRG-FHRLMDYH  325 (389)
T ss_pred             ------CCcHHH-HHHHHHhh
Confidence                  676544 34444433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.69  E-value=1.5e-13  Score=144.41  Aligned_cols=303  Identities=13%  Similarity=0.072  Sum_probs=216.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      +...+.-|......|+|++|.+.+.++-+.    .+.  +  ...+...+.+....|+++.|..++.++...      .+
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~--p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~  149 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ--P--VVNYLLAAEAAQQRGDEARANQHLERAAEL------AD  149 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc--h--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence            344456677777789999999776654432    111  1  223445566779999999999999998642      22


Q ss_pred             hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          430 EV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       430 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      +. .......+.++...|++++|+..+++.++.        .|....++..++.+|...|++++|+..+.+..+....  
T Consensus       150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~--  219 (398)
T PRK10747        150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG--  219 (398)
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--
Confidence            21 122234589999999999999999999988        7888899999999999999999999999988876211  


Q ss_pred             CCCChHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          509 PGVPPEEIA----SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (729)
Q Consensus       509 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (729)
                         +.....    .++..+........+    ...+.+..+..+..   .+....+...++..+...|+.++|...++++
T Consensus       220 ---~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~  289 (398)
T PRK10747        220 ---DEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDG  289 (398)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               122222    122222222222222    23333333332221   1122467788999999999999999999988


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI  664 (729)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  664 (729)
                      ++.     .. ++   ......+.  ...++++++++.+++.++.        +|+....+..+|.++...|++++|.++
T Consensus       290 l~~-----~~-~~---~l~~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~  350 (398)
T PRK10747        290 LKR-----QY-DE---RLVLLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLA  350 (398)
T ss_pred             Hhc-----CC-CH---HHHHHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            773     11 11   11122222  2458999999999999988        899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          665 LEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       665 ~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                      |+++++.        .|+.. .+..|+.++...|+.++|. ++|++++.+.
T Consensus       351 le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~-~~~~~~l~~~  391 (398)
T PRK10747        351 FRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAA-AMRRDGLMLT  391 (398)
T ss_pred             HHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHH-HHHHHHHhhh
Confidence            9999986        56654 4568999999999999999 9999998764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.69  E-value=1.1e-13  Score=144.74  Aligned_cols=334  Identities=13%  Similarity=0.023  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (729)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (729)
                      ..++..+|.++...|+.+.+...+.++......     +....+.....+.++...|++++|...++++++..|...   
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---   77 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---   77 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---
Confidence            345889999999999999998888888877533     334556677889999999999999999999998876542   


Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (729)
                           .++.. +..+...|++..+.....+++..  ..+..+.....+..+|.++..+|++++|+..+++++++      
T Consensus        78 -----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------  143 (355)
T cd05804          78 -----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------  143 (355)
T ss_pred             -----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence                 22333 55566666655555555555433  34567777788889999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                        .|....++..+|.++...|++++|+.++++++.....     ........+..+|.++...|++++|+..|++++...
T Consensus       144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~  216 (355)
T cd05804         144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS  216 (355)
T ss_pred             --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence              6777889999999999999999999999999987432     122334567789999999999999999999986443


Q ss_pred             HhCCCCCCcHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          548 NDAPGQQSTVAGI--EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (729)
Q Consensus       548 ~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  625 (729)
                      +.    .......  ...+...+...|....+..+ +.+..........  ..........+.++...|+.++|...++.
T Consensus       217 ~~----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~  289 (355)
T cd05804         217 AE----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAA  289 (355)
T ss_pred             cC----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            21    1111111  11223333444543333222 2222222211111  11223334678888999999999999999


Q ss_pred             HHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          626 ARSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       626 al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                      ......... .........+....|.++...|++++|++.+..++.+...+-|
T Consensus       290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg  342 (355)
T cd05804         290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG  342 (355)
T ss_pred             HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            887655410 0012334557788899999999999999999999998865544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=2e-15  Score=152.33  Aligned_cols=269  Identities=16%  Similarity=0.086  Sum_probs=202.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (729)
                      ..|..+++.|+..+|.-.|+.|+.-.     |    ..+.+|..||.+....++-..|+..+++|+++        +|..
T Consensus       290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N  352 (579)
T KOG1125|consen  290 KEGCNLMKNGDLSEAALAFEAAVKQD-----P----QHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN  352 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhhC-----h----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence            47999999999999999999999775     3    34567999999999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      ..++..||..|...|.-.+|+.++.+.+...+.......... .-......-......+..-.++|-.+   ....+. .
T Consensus       353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLea---a~~~~~-~  427 (579)
T KOG1125|consen  353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEA---ARQLPT-K  427 (579)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHH---HHhCCC-C
Confidence            999999999999999999999999999876643321100000 00000000000000111222233222   222221 2


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ....+...||.+|...|+|++|+.+|+.||..        .|.....|..||-.+..-.+..+|+..|.+|+++      
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------  493 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------  493 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------
Confidence            34567788999999999999999999999998        8999999999999999999999999999999999      


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHcCCHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDS  577 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A  577 (729)
                         .|..+++.++||..++.+|.|++|.++|-.||.+.+...+...   .--.+|..|-.++...++.+-+
T Consensus       494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence               6778899999999999999999999999999999887433221   1123444555555566665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2.1e-13  Score=127.95  Aligned_cols=274  Identities=18%  Similarity=0.198  Sum_probs=214.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHH
Q 004811          227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA  306 (729)
Q Consensus       227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  306 (729)
                      .|.-++...+ .++|++.|...++.         ++....+...||..|.+.|..+.|+.+.+..+...     .-....
T Consensus        41 ~GlNfLLs~Q-~dKAvdlF~e~l~~---------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~~q  105 (389)
T COG2956          41 KGLNFLLSNQ-PDKAVDLFLEMLQE---------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTFEQ  105 (389)
T ss_pred             hHHHHHhhcC-cchHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCchHH
Confidence            3444555555 89999998888763         35668888999999999999999999988877653     111233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (729)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (729)
                      ...++..||.-|...|-++.|...|....+.        ......++..|..+|....+|++|++..++...+.++.   
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---  174 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---  174 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---
Confidence            4567899999999999999999999987765        23445688889999999999999999988888776554   


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (729)
Q Consensus       387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (729)
                      .....+..+..++..+....+.+.|+..+.+|+..      ++....+-..+|.++...|+|..|++.++.+++.     
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----  243 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-----  243 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----
Confidence            45677888889999999999999999999999763      5566677788999999999999999999998887     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 004811          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (729)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (729)
                        |......+...|..+|..+|+.++.+..+.++.+....          ..+...++.+-....-.+.|..++.+-+..
T Consensus       244 --n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r  311 (389)
T COG2956         244 --NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQLRR  311 (389)
T ss_pred             --ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence              45556778888999999999999999999999887433          223445566666666677787777766665


Q ss_pred             HHh
Q 004811          547 YND  549 (729)
Q Consensus       547 ~~~  549 (729)
                      .|.
T Consensus       312 ~Pt  314 (389)
T COG2956         312 KPT  314 (389)
T ss_pred             CCc
Confidence            443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.68  E-value=3.4e-14  Score=148.79  Aligned_cols=339  Identities=16%  Similarity=0.104  Sum_probs=237.7

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004811          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (729)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (729)
                      +|+.+..+..+|..+...|+ ++.|...+.++.......      ..........+.++...|++++|...++++++.. 
T Consensus         2 dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-   73 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAAR------ATERERAHVEALSAWIAGDLPKALALLEQLLDDY-   73 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence            68999999999999988886 899888888887765322      2234556678999999999999999999999875 


Q ss_pred             hhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (729)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (729)
                          +.+..    ++.. +..+...|++..+.....+++..    ..+.+|....++..+|.++...|++++|+..++++
T Consensus        74 ----P~~~~----a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  140 (355)
T cd05804          74 ----PRDLL----ALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA  140 (355)
T ss_pred             ----CCcHH----HHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                33332    2332 55666666665555555555543    23446788888889999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (729)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (729)
                      +++.|...        .++..+|.++...|++++|+.++.+++.....  ........+..+|.++...|++++|+..|+
T Consensus       141 l~~~p~~~--------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         141 LELNPDDA--------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             HhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99887652        46889999999999999999999998764322  122334567789999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH
Q 004811          457 KALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (729)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (729)
                      +++....     ........  ...+...+...|....+..+ +.+........+.   +.........+.++...|+.+
T Consensus       211 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         211 THIAPSA-----ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHhcccc-----CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCHH
Confidence            9864410     01111111  11223333444543333332 2222221111011   112222346788888999999


Q ss_pred             HHHHHHHHHHHHHHhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004811          535 QAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (729)
Q Consensus       535 ~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (729)
                      +|...+..........  .+.......+....+.++...|++++|+..+..++.+...+|+.+
T Consensus       282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~  344 (355)
T cd05804         282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH  344 (355)
T ss_pred             HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            9999999887776551  022223345667789999999999999999999999998888765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.68  E-value=4.3e-14  Score=148.50  Aligned_cols=308  Identities=13%  Similarity=0.049  Sum_probs=216.4

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      +...+..|...+..|+ |++|.+...++-+.       .+.|.  ..+...+......|+++.|..+|.++.+..     
T Consensus        84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~-------~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----  148 (398)
T PRK10747         84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADH-------AEQPV--VNYLLAAEAAQQRGDEARANQHLERAAELA-----  148 (398)
T ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc-------ccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence            3445677777888887 88888666654432       12222  224444666699999999999999998764     


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (729)
                      ++..   .......+.++...|++++|+..++++++.        .|....++..++.+|...|+|++|+..+.+..+..
T Consensus       149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            2221   122445589999999999999999999888        78889999999999999999999999998887654


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (729)
Q Consensus       381 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (729)
                      .............++..+........+-+....+++..-      ...+....+...++..+...|+.++|...++++++
T Consensus       218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            321100000000112222111122222222222222211      11234456778899999999999999999999987


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 004811          461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL  540 (729)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (729)
                      .        .++ .......+.  ...+++++++..+++.++.         +|+....+..+|.++...+++++|..+|
T Consensus       292 ~--------~~~-~~l~~l~~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~~l  351 (398)
T PRK10747        292 R--------QYD-ERLVLLIPR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASLAF  351 (398)
T ss_pred             c--------CCC-HHHHHHHhh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4        222 222222222  2449999999999998877         4455678899999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          541 QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       541 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                      +++++..|+.        ..+..++.++...|+.++|..+|++++.+.
T Consensus       352 e~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        352 RAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9999986554        456689999999999999999999998864

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=1.8e-14  Score=144.85  Aligned_cols=221  Identities=18%  Similarity=0.103  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004811          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (729)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (729)
                      .+.++..+.+++...+     ......+..++.+|.+|...|++++|+..|++++++.     ++.+    .+++.+|.+
T Consensus        42 ~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~----~a~~~lg~~  107 (296)
T PRK11189         42 QEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMA----DAYNYLGIY  107 (296)
T ss_pred             HHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCH----HHHHHHHHH
Confidence            5677777777764321     1124457889999999999999999999999999986     4443    359999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004811          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (729)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (729)
                      +...|++++|+..|++++++        +|....++.++|.++...|++++|+..|++++++.|...     .    ...
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~~  170 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RAL  170 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HHH
Confidence            99999999999999999999        789999999999999999999999999999999876542     0    111


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhcCCCChhHH
Q 004811          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA---FKTNKGENHPAVA  474 (729)
Q Consensus       398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~  474 (729)
                      ...+....+++++|+..+.++....     ++..   + ..+.++...|++..+ ..+..+.+.   ..+.    .+...
T Consensus       171 ~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l----~~~~~  236 (296)
T PRK11189        171 WLYLAESKLDPKQAKENLKQRYEKL-----DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL----AERLC  236 (296)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHhhC-----Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH----HHHHH
Confidence            1223456789999999997765321     1111   1 134555566766543 233333321   1111    45667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                      .+|+.+|.++...|++++|+.+|+++++.
T Consensus       237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        237 ETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999988

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1e-14  Score=140.97  Aligned_cols=290  Identities=14%  Similarity=0.075  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811          305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (729)
Q Consensus       305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (729)
                      .....-....|..++...+|.+|+..|..|+++        .|+.+..|.+.+.++...++|++|.-..++.+++.+...
T Consensus        46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~  117 (486)
T KOG0550|consen   46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS  117 (486)
T ss_pred             HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc
Confidence            334445677889999999999999999999999        588899999999999999999999999999988876554


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811          385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLAS------------MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (729)
Q Consensus       385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (729)
                      .        .+...+.++...++..+|.+.++..-            .+.......|....+...-+.|+...|++++|.
T Consensus       118 k--------~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~  189 (486)
T KOG0550|consen  118 K--------GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ  189 (486)
T ss_pred             c--------cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence            2        35566777777777777766554211            111111122333444445566666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC---CCChHHHHHHHHHHHHHHHh
Q 004811          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP---GVPPEEIASGLTDVSSIYES  529 (729)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~la~~~~~  529 (729)
                      ..--..+++        ++....+++..|.++...++.+.|+..|++++.+......   ....+.....+..-|.-.++
T Consensus       190 ~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  190 SEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             HHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence            665555555        5666666666666666666666666666666665211100   00011122333334444455


Q ss_pred             cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 004811          530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (729)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  609 (729)
                      .|++..|.+.|..+|.+.|..   ....+.+|.+++.+....|+..+|+.-.+.++.+        .+.+..++...|.+
T Consensus       262 ~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c  330 (486)
T KOG0550|consen  262 NGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANC  330 (486)
T ss_pred             ccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHH
Confidence            555555555555555554432   2233444555555555555555555555555544        23344455555555


Q ss_pred             HHHcCCHHHHHHHHHHHHHH
Q 004811          610 CVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       610 ~~~~g~~~~A~~~~~~al~~  629 (729)
                      +..+++|++|.+.|+++++.
T Consensus       331 ~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            55555555555555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.4e-14  Score=139.95  Aligned_cols=291  Identities=19%  Similarity=0.160  Sum_probs=232.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      ..+.-....|..++.... |..|+..|..|++++         |+.+..|.+.+.+++..|+|++|.-..++.+++..  
T Consensus        47 ~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--  114 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--  114 (486)
T ss_pred             HHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--
Confidence            345566788889999986 999999999999986         44578899999999999999999999999998862  


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhCC--CCchHHHHHHHHHHHHHHhcCHHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL--------EVQKQVLGE--TDPRVGETCRYLAEAHVQALQFSE  368 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~  368 (729)
                         ..+    ..+...+.++..+++..+|...++..-        .....+...  ..|....+...-+.++...|++++
T Consensus       115 ---~~~----k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~  187 (486)
T KOG0550|consen  115 ---GFS----KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE  187 (486)
T ss_pred             ---Ccc----ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence               222    236667778877777777776555211        111111111  125556667778899999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHH
Q 004811          369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND------QDAEVASVDCSIGDTY  442 (729)
Q Consensus       369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~  442 (729)
                      |...--..+++.+.+.        .+++..|.++...++.+.|+.+|++++.+-+...      ..+.....+...|.-.
T Consensus       188 a~~ea~~ilkld~~n~--------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  188 AQSEAIDILKLDATNA--------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA  259 (486)
T ss_pred             HHHHHHHHHhcccchh--------HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence            9999888888876653        5688899999999999999999999986533221      1345566677889999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (729)
                      ++.|++..|.+.|..+|.+-..    +...++.+|.++|.+...+|+..+|+..++.++.+         ++....++..
T Consensus       260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~  326 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR  326 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence            9999999999999999998222    13356788999999999999999999999999999         7788999999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          523 VSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .|.++..+++|++|++.|+++++....
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999998655

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.9e-12  Score=129.71  Aligned_cols=460  Identities=13%  Similarity=0.042  Sum_probs=291.1

Q ss_pred             cCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 004811          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (729)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (729)
                      ........+++|.++......+....|+...++.....++.+.++ |++|+...+.-...          .......+.-
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~----------~~~~~~~fEK   85 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGAL----------LVINSFFFEK   85 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchh----------hhcchhhHHH
Confidence            333444556667766666666677779999999999999999987 76666433321110          0011122678


Q ss_pred             HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------
Q 004811          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-------------  338 (729)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------  338 (729)
                      +.|.++++..++|+..++-+-..        +    ..++...|.+++++|+|++|+..|+..++-.             
T Consensus        86 AYc~Yrlnk~Dealk~~~~~~~~--------~----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLKGLDRL--------D----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHHHHcccHHHHHHHHhccccc--------c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            99999999999999999822211        1    1236678999999999999999999874321             


Q ss_pred             ----------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHH
Q 004811          339 ----------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-------SLEEAADRRLMGLI  401 (729)
Q Consensus       339 ----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~lg~~  401 (729)
                                .+..........+.+++.|.++...|+|.+|++.++++++++.......       ......+...++.+
T Consensus       154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV  233 (652)
T KOG2376|consen  154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV  233 (652)
T ss_pred             HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence                      0111111223567889999999999999999999999988876644321       12345678889999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH----HHHHhcCCCChhHHHH
Q 004811          402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD-EAGFAYQKALT----AFKTNKGENHPAVASV  476 (729)
Q Consensus       402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~----~~~~~~~~~~~~~~~~  476 (729)
                      +..+|+.++|...|...+..  ...+.+..+.+-++|-.+-....-++ .++..++....    .+....  .+.....+
T Consensus       234 lQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~~qk~~i  309 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SKKQKQAI  309 (652)
T ss_pred             HHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHH
Confidence            99999999999999877642  33445555656565543332222222 11111111100    000000  02333455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004811          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (729)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (729)
                      +.+.+.+.+..+..+.+.+.....        ++..+.....++..-+ .......+.+|.+++...-+-.+.      .
T Consensus       310 ~~N~~lL~l~tnk~~q~r~~~a~l--------p~~~p~~~~~~ll~~~-t~~~~~~~~ka~e~L~~~~~~~p~------~  374 (652)
T KOG2376|consen  310 YRNNALLALFTNKMDQVRELSASL--------PGMSPESLFPILLQEA-TKVREKKHKKAIELLLQFADGHPE------K  374 (652)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhC--------CccCchHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhccCCc------h
Confidence            666676666666666554443321        2222333333333333 233333677777777665543322      2


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (729)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (729)
                      -..+...++.+...+|+++.|+..+...+..+......- .+.+.+-..+-..+...++.+-|...+.+|+..+......
T Consensus       375 s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~  453 (652)
T KOG2376|consen  375 SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG  453 (652)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence            245667789999999999999999985553322211110 0112233334456677777788899999999887765443


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                       .+.....+..++.+-.+.|+-++|...+++.++.        +|...+++..|...|... +.+.|.
T Consensus       454 -s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~  511 (652)
T KOG2376|consen  454 -SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAE  511 (652)
T ss_pred             -chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHH
Confidence             3555557778888888899999999999999976        577888888888877765 556664

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=6.1e-15  Score=148.94  Aligned_cols=270  Identities=17%  Similarity=0.175  Sum_probs=205.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (729)
Q Consensus       396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (729)
                      +..|..+++.|+..+|.-.|+.|++      .+|..+.+|..||.+....++-..|+..+++++++        +|....
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVk------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle  354 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVK------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE  354 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence            5678899999999999999998875      58999999999999999999999999999999999        899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC-CCC-hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVP-GVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      ++..||..|...|.-.+|+.++.+-+..-.+... ... ......    ...-......+..-.++|-.+....+..   
T Consensus       355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~---  427 (579)
T KOG1125|consen  355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK---  427 (579)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence            9999999999999999999999998776311100 000 000000    0000000111222233444443333321   


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (729)
                        .-..+...||.+|...|+|++|+.+|+.|+..        .+.....|+.||-.+....+.++|+..|++|+++    
T Consensus       428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----  493 (579)
T KOG1125|consen  428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL----  493 (579)
T ss_pred             --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence              12467789999999999999999999999986        2345789999999999999999999999999999    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHHHHHHHHHhCCHhHHH
Q 004811          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD--VDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~--~~~~~~~La~~~~~~g~~~~A~  704 (729)
                          .|..++++++||..|..+|.|++|..+|-.|+.+.++..+.....  .-.+|..|-.++...++.+-+.
T Consensus       494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence                999999999999999999999999999999999987643311111  2345666666677777766444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=7.3e-13  Score=125.39  Aligned_cols=402  Identities=18%  Similarity=0.105  Sum_probs=243.3

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHH
Q 004811          232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH  311 (729)
Q Consensus       232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  311 (729)
                      +...| |..|+.+++-++..-+        .+....-..+|.|++++|+|++|+..|+.+....       ++  ....+
T Consensus        33 ls~rD-ytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~   94 (557)
T KOG3785|consen   33 LSNRD-YTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELG   94 (557)
T ss_pred             Hhccc-chhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--Ccccc
Confidence            34444 8888888777664321        1122344568999999999999999999887642       11  23358


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (729)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (729)
                      .+||.+++.+|.|.+|.....++-+         .|.....++.++.   +.++-++-.. |...+.-..          
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlah---klndEk~~~~-fh~~LqD~~----------  151 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAH---KLNDEKRILT-FHSSLQDTL----------  151 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHH---HhCcHHHHHH-HHHHHhhhH----------
Confidence            8999999999999999887766532         2555556666554   4455333322 332222111          


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (729)
                       .-...|+.+++..-.|.+|++.|.+.+.      +.+.....-..+|.||+++.-|+-+.+.+.--+..        .|
T Consensus       152 -EdqLSLAsvhYmR~HYQeAIdvYkrvL~------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~p  216 (557)
T KOG3785|consen  152 -EDQLSLASVHYMRMHYQEAIDVYKRVLQ------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FP  216 (557)
T ss_pred             -HHHHhHHHHHHHHHHHHHHHHHHHHHHh------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CC
Confidence             2245677777778889999999988764      56666667778899999999888887777666654        56


Q ss_pred             hHHHHHHHHHHHHHHc--CCHHHH----------------HHHHH----------HHHHHHhcCCCCCChHHHHHHHHHH
Q 004811          472 AVASVFVRLADMYNRT--GKLRES----------------KSYCE----------NALRIYEKPVPGVPPEEIASGLTDV  523 (729)
Q Consensus       472 ~~~~~~~~la~~~~~~--g~~~~A----------------~~~~~----------~al~~~~~~~~~~~~~~~~~~~~~l  523 (729)
                      +...+....+..+++.  |+..++                ..+++          -|++....     --..+..+..+|
T Consensus       217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~-----L~~~IPEARlNL  291 (557)
T KOG3785|consen  217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS-----LMKHIPEARLNL  291 (557)
T ss_pred             CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH-----HHhhChHhhhhh
Confidence            6666666666655543  322221                11111          12222111     012245677889


Q ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----
Q 004811          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-----  598 (729)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----  598 (729)
                      +..|..+++..+|+.+.+..          .+....-|...|.++...|+--...++++-|-+.+.-.++.....     
T Consensus       292 ~iYyL~q~dVqeA~~L~Kdl----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG  361 (557)
T KOG3785|consen  292 IIYYLNQNDVQEAISLCKDL----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG  361 (557)
T ss_pred             eeeecccccHHHHHHHHhhc----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999999988776531          122233455667777777776666666655555444333221000     


Q ss_pred             ------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811          599 ------------------------------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (729)
Q Consensus       599 ------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  648 (729)
                                                    ......++|.++...|++.+|.++|-+.-       +++-.+.......|
T Consensus       362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-------~~~ikn~~~Y~s~L  434 (557)
T KOG3785|consen  362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-------GPEIKNKILYKSML  434 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-------ChhhhhhHHHHHHH
Confidence                                          01123455566666666666666554432       22222333345567


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc-cCCC
Q 004811          649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNND  721 (729)
Q Consensus       649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~  721 (729)
                      |.||...+..+-|..++-+.         ....+....+..+|......+++=-|. +.|..+-.+||. ..+.
T Consensus       435 ArCyi~nkkP~lAW~~~lk~---------~t~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP~pEnWe  498 (557)
T KOG3785|consen  435 ARCYIRNKKPQLAWDMMLKT---------NTPSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDPTPENWE  498 (557)
T ss_pred             HHHHHhcCCchHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCCCccccC
Confidence            77777777777766655432         112233444555677777777777777 788888788887 4443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=1.4e-11  Score=121.25  Aligned_cols=390  Identities=11%  Similarity=0.060  Sum_probs=301.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      ...+...|..-..++++..|...|++||...         ...+..|...+.+-.+......|..++.+|+.+       
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-------  136 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-------  136 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-------
Confidence            3346677888888999999999999999874         123445889999999999999999999999999       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  424 (729)
                       -|..-..|+.....--.+|+...|.+.|++-++..|..         .+|......-.+....+.|...|++-+..   
T Consensus       137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e---------qaW~sfI~fElRykeieraR~IYerfV~~---  203 (677)
T KOG1915|consen  137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE---------QAWLSFIKFELRYKEIERARSIYERFVLV---  203 (677)
T ss_pred             -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhee---
Confidence             47888889988888889999999999999999887654         45777777888889999999999877542   


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (729)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (729)
                         +|. ...|...+..-...|+..-|...|++|++.+..     +......+...|..-..+..++.|.-+|+-|+...
T Consensus       204 ---HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~  274 (677)
T KOG1915|consen  204 ---HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI  274 (677)
T ss_pred             ---ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               443 457788899999999999999999999988543     34455566677777777888888888887777643


Q ss_pred             hcC---------------CCC--------------------CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          505 EKP---------------VPG--------------------VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       505 ~~~---------------~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .+.               ++.                    ..+|....+|...-.+-...|+.+.-.+.|++|+.-.|.
T Consensus       275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp  354 (677)
T KOG1915|consen  275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP  354 (677)
T ss_pred             CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence            321               000                    112223456666677777789999999999999986654


Q ss_pred             CCCCCCcHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMY---YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (729)
                      ........-.+|..+-.++   ....+.+.+...|+.++++.+    .....++.+|...|....++.+...|...+-.|
T Consensus       355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A  430 (677)
T KOG1915|consen  355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA  430 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3222222222333332222   356789999999999998743    344567889999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHH
Q 004811          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ  706 (729)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~  706 (729)
                      +-.        .|..- +......+-.++++++....+|++.++.        .|.+..++...|.+-..+|+.+.|. .
T Consensus       431 IG~--------cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaR-a  492 (677)
T KOG1915|consen  431 IGK--------CPKDK-LFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRAR-A  492 (677)
T ss_pred             hcc--------CCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHH-H
Confidence            887        44432 4455566778889999999999999965        7999999999999999999999999 9


Q ss_pred             HHHHHHhh
Q 004811          707 SLETLLDA  714 (729)
Q Consensus       707 ~l~~al~~  714 (729)
                      .|+-|++-
T Consensus       493 ifelAi~q  500 (677)
T KOG1915|consen  493 IFELAISQ  500 (677)
T ss_pred             HHHHHhcC
Confidence            99988864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.61  E-value=2.4e-11  Score=128.62  Aligned_cols=298  Identities=16%  Similarity=0.142  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 004811          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (729)
Q Consensus       266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (729)
                      .++.....++...|++++|+.+++......         ......+-..|.++..+|++++|...|+..+..        
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------   67 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------   67 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence            345556888999999999999998765442         123445788999999999999999999999998        


Q ss_pred             CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHH----H--------------------HHHHH
Q 004811          346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLE----E--------------------AADRR  396 (729)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~----~--------------------a~~~~  396 (729)
                      +|+....+..+..+.....     +.+.-..+|++....+|....+....    .                    .....
T Consensus        68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~  147 (517)
T PF12569_consen   68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS  147 (517)
T ss_pred             CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            7888888888888774333     45666777776666555433221000    0                    01112


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhC-----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          397 LMGLICETKGDHEAALEHLVLASMTMIAN-----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (729)
Q Consensus       397 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (729)
                      .+-.+|....+..-....+..........           ..+....++++.+|..|...|++++|+.+++++++.    
T Consensus       148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----  223 (517)
T PF12569_consen  148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----  223 (517)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence            22222221111111111222111111111           112234678899999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (729)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (729)
                          .|..+..|...|.++-..|++.+|...++.|..+         +...-.+-...+..+.+.|+.++|...+..-..
T Consensus       224 ----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  224 ----TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTR  290 (517)
T ss_pred             ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence                8999999999999999999999999999999888         222334556677888899999999887654432


Q ss_pred             HHHhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811          546 IYNDAPGQQS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       546 ~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      .......+-.  ...+.....|.+|.+.|++..|++.|....+.+....+..-.
T Consensus       291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfD  344 (517)
T PF12569_consen  291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFD  344 (517)
T ss_pred             CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            2110101111  123344567999999999999999999999998887665433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=1.1e-11  Score=117.44  Aligned_cols=391  Identities=14%  Similarity=0.106  Sum_probs=217.4

Q ss_pred             ccccccccccCcccccC-CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811          197 MKKRKGKLHKGQDVSEA-GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (729)
Q Consensus       197 ~~~~~~~~~a~~~~~~~-~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~  275 (729)
                      +...++|..|+..+.-. ..+..+....-+.+|.+++..|+ |++|+..|.-+..-      .+++   +....+||.|+
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~~---~el~vnLAcc~  101 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDAP---AELGVNLACCK  101 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCCC---cccchhHHHHH
Confidence            44455666666222211 22223334566678999999997 88888887766541      2222   45577899999


Q ss_pred             HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (729)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (729)
                      +-+|.|.+|.....++-+..          .....++.++   .+.++-++-... ...++           +..+-...
T Consensus       102 FyLg~Y~eA~~~~~ka~k~p----------L~~RLlfhla---hklndEk~~~~f-h~~Lq-----------D~~EdqLS  156 (557)
T KOG3785|consen  102 FYLGQYIEAKSIAEKAPKTP----------LCIRLLFHLA---HKLNDEKRILTF-HSSLQ-----------DTLEDQLS  156 (557)
T ss_pred             HHHHHHHHHHHHHhhCCCCh----------HHHHHHHHHH---HHhCcHHHHHHH-HHHHh-----------hhHHHHHh
Confidence            99999999999988875432          2233333333   233443322222 22111           12233445


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004811          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (729)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (729)
                      ||.+++..-.|.+|++.|.+++.-.+...        ..-..++.+|.++.-|+-+.+.+.--+..      .|+...+.
T Consensus       157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~--------alNVy~ALCyyKlDYydvsqevl~vYL~q------~pdStiA~  222 (557)
T KOG3785|consen  157 LASVHYMRMHYQEAIDVYKRVLQDNPEYI--------ALNVYMALCYYKLDYYDVSQEVLKVYLRQ------FPDSTIAK  222 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhh--------hhHHHHHHHHHhcchhhhHHHHHHHHHHh------CCCcHHHH
Confidence            56666666666777777776665544332        23445666666666666665555433321      22222222


Q ss_pred             HHHHHHHHH--cCCHHHH----------------HHHHH----------HHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          436 CSIGDTYLS--LSRYDEA----------------GFAYQ----------KALTAFKTNKGENHPAVASVFVRLADMYNRT  487 (729)
Q Consensus       436 ~~la~~~~~--~g~~~~A----------------~~~~~----------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  487 (729)
                      +..+...++  .|+..++                ...++          -|++.....    -...+.+..+|...|..+
T Consensus       223 NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L----~~~IPEARlNL~iYyL~q  298 (557)
T KOG3785|consen  223 NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL----MKHIPEARLNLIIYYLNQ  298 (557)
T ss_pred             HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH----HhhChHhhhhheeeeccc
Confidence            333332222  1222111                11111          112211111    123456788899999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC----------CCCCCc-
Q 004811          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA----------PGQQST-  556 (729)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~-  556 (729)
                      ++..+|..+++..            .|....-+...|.+....|+--...+.++-|.+.+.-.          +|.... 
T Consensus       299 ~dVqeA~~L~Kdl------------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA  366 (557)
T KOG3785|consen  299 NDVQEAISLCKDL------------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA  366 (557)
T ss_pred             ccHHHHHHHHhhc------------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence            9999888776542            22333445666777777666544444444443333211          111100 


Q ss_pred             -------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 004811          557 -------------------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV  611 (729)
Q Consensus       557 -------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  611 (729)
                                               --...++++.++...|++.+|.+.|-+.-..       ...........||.||.
T Consensus       367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-------~ikn~~~Y~s~LArCyi  439 (557)
T KOG3785|consen  367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-------EIKNKILYKSMLARCYI  439 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-------hhhhhHHHHHHHHHHHH
Confidence                                     0112356788888889999998888654321       11122345667899999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004811          612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (729)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (729)
                      ..+.++-|-.++-+.-.         ..+....+..+|..+...+++=-|.+.|...
T Consensus       440 ~nkkP~lAW~~~lk~~t---------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l  487 (557)
T KOG3785|consen  440 RNKKPQLAWDMMLKTNT---------PSERFSLLQLIANDCYKANEFYYAAKAFDEL  487 (557)
T ss_pred             hcCCchHHHHHHHhcCC---------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999998877755321         3344456677888888888877666666544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=2.3e-09  Score=106.26  Aligned_cols=458  Identities=13%  Similarity=0.038  Sum_probs=299.5

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-ChHHHHHHHHHhcccchhh
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  298 (729)
                      .+...+++|..++.--+|.+.|...+++|..+.+.+..-.  ..-..+...|+.+|.... .+..|...+++++++.   
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels---  119 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS---  119 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh---
Confidence            4567789999998888899999999999999987663221  223567788999999888 7999999999999986   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHHHHHHHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQKFCQMA  376 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a  376 (729)
                        ...|......++.|+.++....++..|++.+.-..+.+..+    ......+++.+  +.++....+..+.......+
T Consensus       120 --q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~----~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~  193 (629)
T KOG2300|consen  120 --QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHI----CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRC  193 (629)
T ss_pred             --cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchh----hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence              44444455668999999999999999998854333221110    11222333333  33344444555555666665


Q ss_pred             HHHHHhcCCCC-CHHHHH-HHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhCCC-------------ChhH--------H
Q 004811          377 LDIHKDNGSPA-SLEEAA-DRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQ-------------DAEV--------A  432 (729)
Q Consensus       377 l~~~~~~~~~~-~~~~a~-~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~--------~  432 (729)
                      -.+........ ..+... .+..+-. .|...|+...+...+++..+.......             .+..        .
T Consensus       194 ~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqi  273 (629)
T KOG2300|consen  194 GQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQI  273 (629)
T ss_pred             HHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhh
Confidence            55554443221 111111 1222322 345567777776666644332221111             1111        1


Q ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          433 SVDCSIGDT--YLSLSRYDEAGFAYQKALTAFKTNKGEN--HP----AVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (729)
Q Consensus       433 ~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (729)
                      .++..+-.+  -...|-+++|.++-++++...++....+  .+    .....+-.+..+-.-.|++.+|++....+.+.+
T Consensus       274 caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~  353 (629)
T KOG2300|consen  274 CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWC  353 (629)
T ss_pred             HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            111111111  1245778999999999988766654332  11    122345566777788999999999999999887


Q ss_pred             hcCCCC--CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          505 EKPVPG--VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (729)
Q Consensus       505 ~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (729)
                      .+.- +  --....+.+...+|.....-+.++.|...|..|.+.....    ...+.+-.++|..|...|+-+.-.+   
T Consensus       354 ~r~p-~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~---  425 (629)
T KOG2300|consen  354 TRFP-TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK---  425 (629)
T ss_pred             HhCC-chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH---
Confidence            7631 1  1122345667778888888899999999999998876433    2345566789999999887654333   


Q ss_pred             HHHHHHHHhCCCC------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811          583 NAISKLRAIGERK------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (729)
Q Consensus       583 ~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (729)
                       +++.   ++..+      ....+.+++..|...+.++++.+|...+.+.+++.....  .+.-..-.+..|+.+..-.|
T Consensus       426 -~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslg  499 (629)
T KOG2300|consen  426 -ALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLG  499 (629)
T ss_pred             -HHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhc
Confidence             3332   22221      112345677788888999999999999999999853211  12233446678899999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC--HhHHH
Q 004811          657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR--VRSRK  704 (729)
Q Consensus       657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~--~~~A~  704 (729)
                      +..++.....-++++..++  ++.|-.......+-.+|...|+  .+...
T Consensus       500 n~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~  547 (629)
T KOG2300|consen  500 NTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMEN  547 (629)
T ss_pred             chHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHH
Confidence            9999999999999998776  6677777777778888999998  44443

>PLN02789 farnesyltranstransferase

Probab=99.51  E-value=6.5e-12  Score=125.66  Aligned_cols=231  Identities=13%  Similarity=0.054  Sum_probs=186.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004811          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEE  515 (729)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (729)
                      .+-.++...+++++|+..+.+++.+        +|....+|...+.++..+| ++++++..+++++..         .+.
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------npk  104 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------NPK  104 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------CCc
Confidence            3334456778999999999999998        8999999999999999998 689999999999988         444


Q ss_pred             HHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          516 IASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       516 ~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      ...+|...+.++...|+.  ++++.++.+++++.++.       ..+|...+.++...|++++|+.++.++++.-     
T Consensus       105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-----  172 (320)
T PLN02789        105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEED-----  172 (320)
T ss_pred             chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-----
Confidence            567799999888888874  67899999999887766       5789999999999999999999999999861     


Q ss_pred             CCChHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHH
Q 004811          594 RKSAFFGVALNQMGLACVQR---YSI----NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAI  662 (729)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  662 (729)
                         +....+|+..+.++...   |.+    ++++.+..+++.+        +|+...+|..++.++..    .++..+|+
T Consensus       173 ---~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~  241 (320)
T PLN02789        173 ---VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVS  241 (320)
T ss_pred             ---CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence               22457888888887765   323    5788888899998        89999999999999988    45667788


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC------------------CHhHHHHHHHHHHHhhcc
Q 004811          663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG------------------RVRSRKAQSLETLLDANS  716 (729)
Q Consensus       663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g------------------~~~~A~~~~l~~al~~~p  716 (729)
                      ..+.+++..        .|....++..|+.+|....                  ..++|. ..++.+-+.||
T Consensus       242 ~~~~~~~~~--------~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~d~  304 (320)
T PLN02789        242 SVCLEVLSK--------DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ-AVCSELEVADP  304 (320)
T ss_pred             HHHHHhhcc--------cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH-HHHHHHHhhCc
Confidence            888887653        5778889999999998643                  235677 77777755555

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.48  E-value=4.6e-12  Score=123.90  Aligned_cols=182  Identities=19%  Similarity=0.150  Sum_probs=150.3

Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      .+.....++.+|..+...|++++|+..|++++...+..    .....+++.+|.++...|++++|+..|+++++..+.  
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN--  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--
Confidence            34457789999999999999999999999998887644    223457889999999999999999999999986432  


Q ss_pred             CCCChHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH---H--------------HHH
Q 004811          593 ERKSAFFGVALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHPDTLG---V--------------YSN  647 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--------------~~~  647 (729)
                         .+....+++.+|.++...        |++++|+..|++++..        +|....   +              ...
T Consensus       103 ---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~~~~~~~~~~~~~~~  171 (235)
T TIGR03302       103 ---HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--------YPNSEYAPDAKKRMDYLRNRLAGKELY  171 (235)
T ss_pred             ---CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence               223345788899999876        7899999999999987        444322   1              246


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|.+|...|++.+|+..|++++..+     +.+|....+++.+|.++...|++++|. .+++.+....|+
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~~  235 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            7889999999999999999999875     556888999999999999999999999 999888877664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.47  E-value=6.4e-12  Score=125.40  Aligned_cols=229  Identities=17%  Similarity=0.177  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (729)
                      +..+...|..|...+++++|.+.|.++.......++....+..+...+.+|... ++++|+.+|++++.++...+  ...
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~  111 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence            445666677888889999999999999988888888888888888888888666 99999999999999998775  245


Q ss_pred             hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          472 AVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       472 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      ..+.++..+|.+|... |++++|+.+|++|+++++..   ........++..+|.++...|+|++|+..|++........
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence            5688999999999999 99999999999999999873   3566678889999999999999999999999988765433


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 004811          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARS  628 (729)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  628 (729)
                      ..........+...+.+++..||+..|...+++.....+....   ......+..|-.++..  ...+..|+.-|.....
T Consensus       189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence            2223334455677888999999999999888887654322222   2234566666666654  3467888888877766


Q ss_pred             H
Q 004811          629 I  629 (729)
Q Consensus       629 ~  629 (729)
                      +
T Consensus       266 l  266 (282)
T PF14938_consen  266 L  266 (282)
T ss_dssp             -
T ss_pred             c
Confidence            6

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.46  E-value=2e-10  Score=121.71  Aligned_cols=291  Identities=13%  Similarity=0.046  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004811          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (729)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (729)
                      +++..+.++...|++++|+.++.+....        -.+....+...|.++..+|++++|...|...++..|++.     
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~-----   72 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY-----   72 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----
Confidence            4666788899999999999999876555        467788899999999999999999999999999988764     


Q ss_pred             HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhCCC--------------------------ChhHHHHHHHH
Q 004811          390 EEAADRRLMGLICETK-----GDHEAALEHLVLASMTMIANDQ--------------------------DAEVASVDCSI  438 (729)
Q Consensus       390 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~l  438 (729)
                         ..+..+..+....     .+.+.-...|.+....+.....                          ...+..+..++
T Consensus        73 ---~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l  149 (517)
T PF12569_consen   73 ---DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL  149 (517)
T ss_pred             ---HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence               2244444443222     1344445555543222111000                          00011122222


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh---cC--------CCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTN---KG--------ENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~---~~--------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      -.+|.   +..++.-+..-+.......   ..        ...| ...++++.+|+.|...|++++|+.++++|+..   
T Consensus       150 k~Ly~---d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---  223 (517)
T PF12569_consen  150 KPLYK---DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---  223 (517)
T ss_pred             HHHHc---ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Confidence            22332   2222222111122221111   00        0122 23578899999999999999999999999998   


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                            .|..+..|...|.++...|++.+|...++.|..+....       -.+-...+..+++.|+.++|...+.....
T Consensus       224 ------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  224 ------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLRAGRIEEAEKTASLFTR  290 (517)
T ss_pred             ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence                  56678899999999999999999999999999886554       23445678888999999999887754432


Q ss_pred             HHH-HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          587 KLR-AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       587 ~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      --. ...+-......+.....|.+|.+.|++..|+..|..+.+++.....
T Consensus       291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            110 0000011123445567799999999999999999999999888654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.46  E-value=6.5e-09  Score=106.66  Aligned_cols=450  Identities=14%  Similarity=0.124  Sum_probs=269.2

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      ...|+.....+..+|+ ...-...|.+||..++..    .|   ..+|-..-......|-.+-++..|++-|++.+    
T Consensus       102 pRIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvt----qH---~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----  169 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVT----QH---DRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----  169 (835)
T ss_pred             CHHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchH----hh---ccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----
Confidence            3456666667777876 788888888888765322    11   11122122222334444556666666555541    


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------------HHHhC
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-------------------------------------KQVLG  343 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------------------~~~~~  343 (729)
                       ...       ......+...+++++|.+.|...+..-                                     +.-.+
T Consensus       170 -~~~-------eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~  241 (835)
T KOG2047|consen  170 -EAR-------EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR  241 (835)
T ss_pred             -HHH-------HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence             111       112223334444454444444332210                                     00001


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH---------------------------HHHHHH-
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL---------------------------EEAADR-  395 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------------~~a~~~-  395 (729)
                      .-.......|..||..|...|.+++|...|++++...-...+-...                           .....- 
T Consensus       242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~  321 (835)
T KOG2047|consen  242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL  321 (835)
T ss_pred             cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence            1123466788999999999999999999999987643211110000                           000000 


Q ss_pred             -----------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004811          396 -----------------------------RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS  446 (729)
Q Consensus       396 -----------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  446 (729)
                                                   ..+-.+-...|+..+-+..|..|+...............|..+|.+|...|
T Consensus       322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~  401 (835)
T KOG2047|consen  322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG  401 (835)
T ss_pred             HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence                                         001122223456677777777776544333334455678899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC----CCCCChH-----HHH
Q 004811          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP----VPGVPPE-----EIA  517 (729)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~-----~~~  517 (729)
                      +.+.|...|+++...--.    .-.+.+.+|...|..-....+++.|+.+.++|...-...    ..+..+.     ...
T Consensus       402 ~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl  477 (835)
T KOG2047|consen  402 DLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL  477 (835)
T ss_pred             cHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence            999999999999886211    124558899999999999999999999999987653221    0111111     123


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      .+|..++.+....|-++.....|++.+++.--.       ..+..+.|..+....-++++.+.|++.+.+++      .+
T Consensus       478 kiWs~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p  544 (835)
T KOG2047|consen  478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFK------WP  544 (835)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------Cc
Confidence            456666777777777777778888887775443       35567888888888889999999999988753      22


Q ss_pred             HHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 004811          598 FFGVALNQM---GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVG---  670 (729)
Q Consensus       598 ~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~---  670 (729)
                      ....+|+..   ...-+..-..+.|..+|++|++.+       .|.... ++...|.+-..-|--..|+..|++|-.   
T Consensus       545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~  617 (835)
T KOG2047|consen  545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK  617 (835)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence            233333322   222223347899999999999863       244433 455556666677877777777777532   


Q ss_pred             -------------HHHHHcCC--------------CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          671 -------------IREEKLGT--------------ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       671 -------------~~~~~~g~--------------~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                                   -...++|.              .+........+.|.+-...|..+.|. ..|.-.-++.
T Consensus       618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR-aIya~~sq~~  688 (835)
T KOG2047|consen  618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR-AIYAHGSQIC  688 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhhhcC
Confidence                         12223332              12233444556677777778888877 6666555543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.46  E-value=3.1e-11  Score=118.06  Aligned_cols=195  Identities=14%  Similarity=0.127  Sum_probs=150.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .......++.+|..+...|++++|+..|++++...     ++++....+++.+|.++...|++++|+..|+++++.... 
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence            44556788999999999999999999999998872     223445578899999999999999999999999998433 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESM--------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (729)
                           .+....+++.+|.++...        |++++|+..|++++...+....    ...++..++...           
T Consensus       103 -----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~-----------  162 (235)
T TIGR03302       103 -----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLR-----------  162 (235)
T ss_pred             -----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHH-----------
Confidence                 444456788899999876        8999999999999988765511    011111111111           


Q ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004811          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD  659 (729)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  659 (729)
                            ..           .......+|.+|...|++.+|+..|++++..+     +++|....+++.+|.++..+|+++
T Consensus       163 ------~~-----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       163 ------NR-----------LAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             ------HH-----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHH
Confidence                  00           11233467889999999999999999999872     335667789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 004811          660 DAIEILEFVVG  670 (729)
Q Consensus       660 ~A~~~~~~al~  670 (729)
                      +|..+++....
T Consensus       221 ~A~~~~~~l~~  231 (235)
T TIGR03302       221 LAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHh
Confidence            99998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.44  E-value=5e-09  Score=107.48  Aligned_cols=329  Identities=14%  Similarity=0.116  Sum_probs=220.3

Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Q 004811          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (729)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  425 (729)
                      +|.....|.....  +..|+..+-+..|.+|+...........+  ...|..+|.+|...|+.+.|...|+++...  ..
T Consensus       345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y  418 (835)
T KOG2047|consen  345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKV--PY  418 (835)
T ss_pred             CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--Cc
Confidence            5666666665544  44688888899999888754333323333  356889999999999999999999998653  12


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCCh------hHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT----NKGENHP------AVASVFVRLADMYNRTGKLRESKS  495 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~  495 (729)
                      +...+.+.+|+..|..-....+++.|+.+.++|...-..    .....+|      ....+|..++.+....|-++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            234566889999999999999999999999988765221    1111122      234567777888888899999999


Q ss_pred             HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH---HHHHHHHHcC
Q 004811          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA---QMGVMYYMLG  572 (729)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~la~~~~~~g  572 (729)
                      .|++.+++.-.         ...+..+.|..+....-+++|.+.|++.+.+++-     +....+|.   .....-+..-
T Consensus       499 vYdriidLria---------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-----p~v~diW~tYLtkfi~rygg~  564 (835)
T KOG2047|consen  499 VYDRIIDLRIA---------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-----PNVYDIWNTYLTKFIKRYGGT  564 (835)
T ss_pred             HHHHHHHHhcC---------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC-----ccHHHHHHHHHHHHHHHhcCC
Confidence            99999888322         3456778888888888999999999998887642     22233333   2222333334


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------HHHHhcCC
Q 004811          573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS----------------ILEQECGP  636 (729)
Q Consensus       573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~~~~~~~  636 (729)
                      ..+.|..+|++|++.++      +...-.++...+.+-...|-...|+..|++|-.                ....++|+
T Consensus       565 klEraRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv  638 (835)
T KOG2047|consen  565 KLERARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV  638 (835)
T ss_pred             CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            78899999999998543      222233445555555566666666666666532                12222331


Q ss_pred             --------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCHh
Q 004811          637 --------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAELLKEAGRVR  701 (729)
Q Consensus       637 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La~~~~~~g~~~  701 (729)
                                    .+..........|.+-...|..+.|...|.-+-+++       +|. ....|...-..-.+.|+-+
T Consensus       639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~-------dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC-------DPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC-------CCcCChHHHHHHHHHHHhcCCHH
Confidence                          123334456677888889999999999999888875       333 3455666677778889844


Q ss_pred             HHHHHHH
Q 004811          702 SRKAQSL  708 (729)
Q Consensus       702 ~A~~~~l  708 (729)
                      .-. +.|
T Consensus       712 T~k-eML  717 (835)
T KOG2047|consen  712 TYK-EML  717 (835)
T ss_pred             HHH-HHH
Confidence            433 444

>PLN02789 farnesyltranstransferase

Probab=99.41  E-value=2.3e-10  Score=114.56  Aligned_cols=209  Identities=10%  Similarity=-0.038  Sum_probs=170.9

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (729)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (729)
                      ++...+.+++|+..+.+++.+      .|....+|...+.++..+| ++++++..+.+++..        +|....+|..
T Consensus        46 ~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~  111 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHH  111 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHH
Confidence            344557788999999998864      6777889999999999998 689999999999998        7888899999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcH
Q 004811          480 LADMYNRTGKL--RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV  557 (729)
Q Consensus       480 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  557 (729)
                      .+.++...|+.  ++++.++.+++++         ++....+|...+.++...|++++|++++.++++..+..       
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~---------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-------  175 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSL---------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-------  175 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-------
Confidence            99999999874  7789999999988         55567899999999999999999999999999987665       


Q ss_pred             HHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004811          558 AGIEAQMGVMYYML---GNY----SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEA  626 (729)
Q Consensus       558 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  626 (729)
                      ..+|+..+.++...   |.+    ++++.+..+++.+.        +....+|+.++.++..    .++..+|...+.++
T Consensus       176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~  247 (320)
T PLN02789        176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV  247 (320)
T ss_pred             hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence            46788888887765   333    46777888888762        2235688888888877    45567788888887


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          627 RSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (729)
                      +..        .+....++..|+.+|...
T Consensus       248 ~~~--------~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        248 LSK--------DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             hcc--------cCCcHHHHHHHHHHHHhh
Confidence            775        677778899999999863

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=1.9e-07  Score=93.07  Aligned_cols=464  Identities=12%  Similarity=0.066  Sum_probs=293.6

Q ss_pred             hHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHH-HcCChHHHHHHHHHhcccch
Q 004811          220 LGPLLLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPV  296 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  296 (729)
                      .+.+++.+|..+...+  + ..++|.+++.....      ..+..-.+.+...+|.+++ ...+++.|...+++|..+..
T Consensus         6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~   78 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK   78 (629)
T ss_pred             HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence            4567889998888777  4 56666665544432      2222344667777887765 57889999999999998764


Q ss_pred             hhccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004811          297 IEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQ  374 (729)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~  374 (729)
                      ..+.-  ....+.+...|+.+|.... .+..|...+++++++.+.     .| .....++.|+.++....++..|.+.+.
T Consensus        79 ~ip~f--ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~-----~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen   79 SIPSF--YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS-----VPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             ccccH--HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            33222  2346677888999998887 889999999999999654     23 234567889999999999999998843


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH---H-HHHHHHHH-HHHHcCC
Q 004811          375 MALDIHKDNGSPASLEEAADRRLM--GLICETKGDHEAALEHLVLASMTMIANDQDAEV---A-SVDCSIGD-TYLSLSR  447 (729)
Q Consensus       375 ~al~~~~~~~~~~~~~~a~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~-~~~~~la~-~~~~~g~  447 (729)
                      -....    .+........+++.+  +.+.....+..+.......+-.+......++..   . ..|..+-. .|...|+
T Consensus       152 vga~s----Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq  227 (629)
T KOG2300|consen  152 VGAES----ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQ  227 (629)
T ss_pred             ccccc----cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            33222    222111222233333  334444445555555555554444433333322   1 12223333 3445677


Q ss_pred             HHHHHHHHHHHHHHHHHhc-----------CCCChhHH--------HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhc
Q 004811          448 YDEAGFAYQKALTAFKTNK-----------GENHPAVA--------SVFVRLADM--YNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~-----------~~~~~~~~--------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      ...+...+++.-.......           +.+.+...        .++..+-.+  -...|-+++|.++-++++...++
T Consensus       228 ~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ek  307 (629)
T KOG2300|consen  228 VRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEK  307 (629)
T ss_pred             hhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            7777766664433322221           11112111        111111111  12457788999999999888766


Q ss_pred             CCCCC-ChH----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHH
Q 004811          507 PVPGV-PPE----EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ---STVAGIEAQMGVMYYMLGNYSDSY  578 (729)
Q Consensus       507 ~~~~~-~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~  578 (729)
                      ....+ ..+    .....+-.++.+-.-.|++.+|++....+.+.+...++..   ...+.+...+|......+.++.|.
T Consensus       308 lkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe  387 (629)
T KOG2300|consen  308 LKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAE  387 (629)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHH
Confidence            42111 111    1223455667777889999999999999999988876532   234566777888888899999999


Q ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--h-----hHHHHHHHHHHH
Q 004811          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH--P-----DTLGVYSNLAGT  651 (729)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~-----~~~~~~~~la~~  651 (729)
                      ..|..|.+....     ....+.+-.++|..|.+.|+-+.-.    ++++..    ++.+  +     ....+++..|..
T Consensus       388 ~hf~~a~k~t~~-----~dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~p~nt~s~ssq~l~a~~~~v~glf  454 (629)
T KOG2300|consen  388 FHFIEATKLTES-----IDLQAFCNLNLAISYLRIGDAEDLY----KALDLI----GPLNTNSLSSQRLEASILYVYGLF  454 (629)
T ss_pred             HHHHHHHHhhhH-----HHHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----CCCCCCcchHHHHHHHHHHHHHHH
Confidence            999999887543     2335677788999999987654332    233221    2111  1     123466777888


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...++++.||...+.+.+++....  ..+.-....+..|+.+....|+..++. +...-++++...
T Consensus       455 af~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~-nmvrpamqlAkK  517 (629)
T KOG2300|consen  455 AFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESR-NMVRPAMQLAKK  517 (629)
T ss_pred             HHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHH-hccchHHHHHhc
Confidence            889999999999999999875211  112233455677899999999999999 888877776543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.39  E-value=3.3e-11  Score=120.26  Aligned_cols=231  Identities=17%  Similarity=0.178  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      +..+...|.+|...+++++|...|.++..+..+.   .+....+..+...+.+|... ++++|+.+|++|+.++... |.
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-G~  109 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-GR  109 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-T-
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-Cc
Confidence            4445555777888899999999999999988773   34566677888888888766 9999999999999999887 87


Q ss_pred             CCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          554 QSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      ....+.++..+|.+|... |++++|+.+|++|++++...+.  +.....++..+|.++...|+|++|++.|++.......
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            788889999999999999 9999999999999999988663  3456778899999999999999999999998775322


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHH
Q 004811          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLET  710 (729)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~  710 (729)
                      ... ........++..+.|+...|+...|...+++......   +-.+..-......|...+..  ...+.+++ ..|..
T Consensus       188 ~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~~D~e~f~~av-~~~d~  262 (282)
T PF14938_consen  188 NNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEEGDVEAFTEAV-AEYDS  262 (282)
T ss_dssp             HCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHTT-CCCHHHHC-HHHTT
T ss_pred             ccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHhCCHHHHHHHH-HHHcc
Confidence            111 0223344667888899999999999999988875421   11123334445555555442  34555666 66655


Q ss_pred             HHhhcc
Q 004811          711 LLDANS  716 (729)
Q Consensus       711 al~~~p  716 (729)
                      .-.+||
T Consensus       263 ~~~ld~  268 (282)
T PF14938_consen  263 ISRLDN  268 (282)
T ss_dssp             SS---H
T ss_pred             cCccHH
Confidence            555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=2.1e-09  Score=100.06  Aligned_cols=225  Identities=17%  Similarity=0.165  Sum_probs=170.1

Q ss_pred             HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (729)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (729)
                      .+..+|..|++++..-.+..     +    .....+..||.||+...+|..|..+|++.-.+        .|........
T Consensus        21 I~d~ry~DaI~~l~s~~Er~-----p----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY   83 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERS-----P----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY   83 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcC-----c----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence            66778999999888766554     1    12335888999999999999999999998887        6888888899


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004811          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (729)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (729)
                      .|..+++.+.+..|+.......+. +.       ....++..-+.+.+..+++..+....++.        .....+...
T Consensus        84 ~AQSLY~A~i~ADALrV~~~~~D~-~~-------L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~  147 (459)
T KOG4340|consen   84 QAQSLYKACIYADALRVAFLLLDN-PA-------LHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ  147 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHhcCC-HH-------HHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence            999999999999999887665542 11       11234556677777888888887776543        112456677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-----
Q 004811          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG-----  510 (729)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----  510 (729)
                      .+.|.+.++.|+++.|++-|+.+++.        ....+..-++++.++++.++++.|+++..+.++.--+..|.     
T Consensus       148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm  219 (459)
T KOG4340|consen  148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM  219 (459)
T ss_pred             ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence            89999999999999999999999987        44455667899999999999999999998887754332110     


Q ss_pred             ----C-----------ChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004811          511 ----V-----------PPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (729)
Q Consensus       511 ----~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (729)
                          .           .......+++..+.++++.++++.|.+.+.
T Consensus       220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                0           012245667777888999999988876653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.35  E-value=1.9e-08  Score=98.20  Aligned_cols=303  Identities=15%  Similarity=0.099  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004811          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (729)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (729)
                      ....-|..-...|+|.+|+....++-+..+..        ..++..-+.....+|+++.|-.++.++-+.   .  ....
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p--------~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~--~~~~  152 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP--------VLAYLLAAEAAQQRGDEDRANRYLAEAAEL---A--GDDT  152 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch--------HHHHHHHHHHHHhcccHHHHHHHHHHHhcc---C--CCch
Confidence            34445556667899999999988865544322        345677788889999999999999887532   1  1223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      ......++.+....|+++.|.....++++.        .|....++.....+|...|++.+...++.+..+.      +.
T Consensus       153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka------~~  218 (400)
T COG3071         153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA------GL  218 (400)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc------cC
Confidence            456677899999999999999999999998        7888899999999999999999998888776554      11


Q ss_pred             ChHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          512 PPEEIASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       512 ~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                      -......-+-+.+..  +....+-..+.. +....+-.+......   ..+...++.-+...|++++|.+..+++++...
T Consensus       219 l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~  294 (400)
T COG3071         219 LSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQW  294 (400)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            122222222222222  111122222221 122222222221122   24455678889999999999999999987521


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                         +      ......++  ...-+++..=++..++.++.        +|+....+..||.+|.+.+.|.+|..+|+.++
T Consensus       295 ---D------~~L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl  355 (400)
T COG3071         295 ---D------PRLCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAAL  355 (400)
T ss_pred             ---C------hhHHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence               1      11111111  33557778878888888877        88888899999999999999999999999998


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      ...         .....+..+|.++.++|+..+|. +.++.++.+
T Consensus       356 ~~~---------~s~~~~~~la~~~~~~g~~~~A~-~~r~e~L~~  390 (400)
T COG3071         356 KLR---------PSASDYAELADALDQLGEPEEAE-QVRREALLL  390 (400)
T ss_pred             hcC---------CChhhHHHHHHHHHHcCChHHHH-HHHHHHHHH
Confidence            752         33566888999999999999999 999988854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=1.2e-07  Score=99.79  Aligned_cols=423  Identities=17%  Similarity=0.131  Sum_probs=234.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---hCCCC
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---LGETD  346 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~  346 (729)
                      .|-..|...|.|++|.++.+.--++.           .-..|++.|..+...++.+.|+++|+++-.....+   +.+ +
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~~DRiH-----------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~  898 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAETKDRIH-----------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-Y  898 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhhcccee-----------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-C
Confidence            35556777777777777665433322           12358899999999999999999999863221111   111 1


Q ss_pred             c----------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHHHH
Q 004811          347 P----------RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-------------ASLEEAADRRLMGLICE  403 (729)
Q Consensus       347 ~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~a~~~~~lg~~~~  403 (729)
                      |          .....|...|..+...|+.+.|+.+|..|-+.+....-.             .....-.+.+.||+.|.
T Consensus       899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE  978 (1416)
T KOG3617|consen  899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE  978 (1416)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence            2          122467778888999999999999998886654321100             00001246788999999


Q ss_pred             HhCCHHHHHHHHHHH------HHHHHhCCCChhHHHH--------HHHHHHHHHHcC-CHHHHHHHHHHH------HHHH
Q 004811          404 TKGDHEAALEHLVLA------SMTMIANDQDAEVASV--------DCSIGDTYLSLS-RYDEAGFAYQKA------LTAF  462 (729)
Q Consensus       404 ~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~--------~~~la~~~~~~g-~~~~A~~~~~~a------l~~~  462 (729)
                      ..|++.+|+.+|.+|      +++.+.++.....+..        +...|..|...| .++.|..+|.+|      ++++
T Consensus       979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen  979 NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence            999999999998776      3444444332222211        123345556665 666676666543      3322


Q ss_pred             ------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHhcCC------------CC--
Q 004811          463 ------------KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC------ENALRIYEKPV------------PG--  510 (729)
Q Consensus       463 ------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~------------~~--  510 (729)
                                  .+-.  +....+..+..-+..+....+|++|..++      +.|+.++....            +.  
T Consensus      1059 F~tqQf~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred             HhhcccHHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcC
Confidence                        1111  12233556677788888999999998765      45555543321            11  


Q ss_pred             --CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-----CCCCC---------cHHHHHHHHHHHHHHcCCH
Q 004811          511 --VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA-----PGQQS---------TVAGIEAQMGVMYYMLGNY  574 (729)
Q Consensus       511 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~---------~~~~~~~~la~~~~~~g~~  574 (729)
                        .+......++..+|.++.++|.|..|-+-|.+|-......     .|+..         ..-.+ +-++.-|+..-+|
T Consensus      1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEi-YImAANyLQtlDW 1215 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEI-YIMAANYLQTLDW 1215 (1416)
T ss_pred             CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccccee-eeehhhhhhhccc
Confidence              1223456788899999999999999998888764433211     02111         00111 1233344444444


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HH
Q 004811          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV--------QRYSINEAVELFEEARSILEQECGPYHPDTL--GV  644 (729)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~  644 (729)
                      ..--+.++..+..+.+         ..++-.||..|.        ...+|++|.-.+++|.+-+.+....++....  ..
T Consensus      1216 q~~pq~mK~I~tFYTK---------gqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~L 1286 (1416)
T KOG3617|consen 1216 QDNPQTMKDIETFYTK---------GQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDAL 1286 (1416)
T ss_pred             ccChHHHhhhHhhhhc---------chhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            4333333333333221         122233333322        2345666666666665544433221111111  11


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          645 YSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       645 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...++.+-..    +--.+++..-..++-.+.++-.-++.-.....+..|.+.+....+|..|. ..++.+-...|.
T Consensus      1287 q~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1287 QEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHH-HHHHHHhhcCCc
Confidence            1122222111    11112333333344333332211222234566777888899999999999 999999888887

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.32  E-value=1.8e-10  Score=127.33  Aligned_cols=285  Identities=12%  Similarity=0.100  Sum_probs=194.3

Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  423 (729)
                      .-+|....++..|...+...+++++|+..++.+++..|...        ..++.+|.++...+++..+...         
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--------~~yy~~G~l~~q~~~~~~~~lv---------   87 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--------SALYISGILSLSRRPLNDSNLL---------   87 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--------ehHHHHHHHHHhhcchhhhhhh---------
Confidence            34688999999999999999999999999999999887765        4588999999999986666543         


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                                   .++.......++ .++.++...+..        .+..-.+++.+|.||.++|++++|...|++++++
T Consensus        88 -------------~~l~~~~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~  145 (906)
T PRK14720         88 -------------NLIDSFSQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA  145 (906)
T ss_pred             -------------hhhhhcccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence                         233444444555 444444443332        3555668899999999999999999999999988


Q ss_pred             HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                               ++..+.+++++|..|... ++++|+.++.+|+..+-+. ........+|..  .+.....+++.=..+.++
T Consensus       146 ---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~k  212 (906)
T PRK14720        146 ---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-KQYVGIEEIWSK--LVHYNSDDFDFFLRIERK  212 (906)
T ss_pred             ---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-hcchHHHHHHHH--HHhcCcccchHHHHHHHH
Confidence                     456678899999999988 9999999999998875543 111122222211  122222233322222222


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      .+..   .+   .......+.-+=..|...++|++++.+++.++++        +|....+...|+.+|.  +.|.. ..
T Consensus       213 i~~~---~~---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~  275 (906)
T PRK14720        213 VLGH---RE---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HS  275 (906)
T ss_pred             HHhh---hc---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cc
Confidence            2221   11   1123455666678888899999999999999999        8888889999999998  55544 55


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .|+.++++.                   .+-.....+..++ ..|++.+..++.
T Consensus       276 ~~ee~l~~s-------------------~l~~~~~~~~~~i-~~fek~i~f~~G  309 (906)
T PRK14720        276 LLEDYLKMS-------------------DIGNNRKPVKDCI-ADFEKNIVFDTG  309 (906)
T ss_pred             hHHHHHHHh-------------------ccccCCccHHHHH-HHHHHHeeecCC
Confidence            666666542                   1111123456666 777777776665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.31  E-value=7e-09  Score=101.17  Aligned_cols=301  Identities=17%  Similarity=0.077  Sum_probs=208.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcccc
Q 004811          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (729)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (729)
                      .....|-.-+..|+ |.+|.....++-+.       .+.|  ..+|..-+.+...+|+++.|-.++.++-+..     .+
T Consensus        86 ~~~~egl~~l~eG~-~~qAEkl~~rnae~-------~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~  150 (400)
T COG3071          86 KALNEGLLKLFEGD-FQQAEKLLRRNAEH-------GEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD  150 (400)
T ss_pred             HHHHHHHHHHhcCc-HHHHHHHHHHhhhc-------Ccch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC
Confidence            34455666666776 77777666664432       2223  4557777888899999999999999998873     11


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                      +   ...+....+.+....|+++.|..-..++++.        .|....++.....+|...|+|.....++.+.-+..--
T Consensus       151 ~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l  219 (400)
T COG3071         151 D---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL  219 (400)
T ss_pred             c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence            1   3345888999999999999999999999988        6888899999999999999999998887765443211


Q ss_pred             cCCCCCHHHHHHHHHHHHH--HHHhCCHHHHH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          383 NGSPASLEEAADRRLMGLI--CETKGDHEAAL---EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK  457 (729)
Q Consensus       383 ~~~~~~~~~a~~~~~lg~~--~~~~g~~~~A~---~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  457 (729)
                      .     .....-+...+..  .....+-..+.   .+++..   -.....+|.   +...++.-+..+|+.++|.+..++
T Consensus       220 ~-----~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~---pr~lr~~p~---l~~~~a~~li~l~~~~~A~~~i~~  288 (400)
T COG3071         220 S-----DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ---PRKLRNDPE---LVVAYAERLIRLGDHDEAQEIIED  288 (400)
T ss_pred             C-----hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc---cHHhhcChh---HHHHHHHHHHHcCChHHHHHHHHH
Confidence            1     1111122222211  11222222222   222211   111222333   345567788999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004811          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (729)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (729)
                      +++...      ++.   ....++  ...-+++..=++..++.++.         ++.....+..||.++.+.+.|.+|.
T Consensus       289 ~Lk~~~------D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA~  348 (400)
T COG3071         289 ALKRQW------DPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKAS  348 (400)
T ss_pred             HHHhcc------Chh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHHH
Confidence            988611      222   111111  23457777777777887777         3333478999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                      .+|+.++...+..        ..+..+|.++.++|+..+|...+++++.+.
T Consensus       349 ~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         349 EALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            9999998876543        567889999999999999999999998554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.30  E-value=3.5e-06  Score=93.87  Aligned_cols=476  Identities=13%  Similarity=0.043  Sum_probs=291.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      ..+.+.+++|..++..-+|++.|..++++++.+.++.  .-. .....+...++.++.+.+... |...++++++.... 
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-  131 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-  131 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence            4677889999999988888999999999999987551  111 223455667799999888877 99999999987632 


Q ss_pred             ccccchHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004811          299 EGQEHALAKFAGHMQL--GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-VGETCRYLAEAHVQALQFSEAQKFCQM  375 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (729)
                        ..+..  +...+.+  ...+...+++..|+..++.........   .++. ...+....+.++...+..+++++.+++
T Consensus       132 --~~~~~--w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~  204 (608)
T PF10345_consen  132 --YGHSA--WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLELLQR  204 (608)
T ss_pred             --cCchh--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence              11111  1112222  223333379999999999998886531   1222 233444456667777888899999998


Q ss_pred             HHHHHHhc--CCCCCHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHhCCCCh----------------------
Q 004811          376 ALDIHKDN--GSPASLEEAADRRLMGL--ICETKGDHEAALEHLVLASMTMIANDQDA----------------------  429 (729)
Q Consensus       376 al~~~~~~--~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------  429 (729)
                      +.......  .+........++..+-.  ++...|++..+...+.+.-..+......+                      
T Consensus       205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~  284 (608)
T PF10345_consen  205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS  284 (608)
T ss_pred             HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence            87766543  11113333344444443  45667887777777665543333221110                      


Q ss_pred             --------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCh---------------hHHHHH
Q 004811          430 --------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG---ENHP---------------AVASVF  477 (729)
Q Consensus       430 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~  477 (729)
                                    ..+-+|..-|......+..++|.+++.++++..++...   ...+               ....++
T Consensus       285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~  364 (608)
T PF10345_consen  285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL  364 (608)
T ss_pred             CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence                          11233444466677778888999999999999887661   1000               122344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC----C
Q 004811          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG----Q  553 (729)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~  553 (729)
                      ..++.+.+-.+++..|...+..+.....+.............++..|..+...|+.+.|+.+|.+..-.......    .
T Consensus       365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~  444 (608)
T PF10345_consen  365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF  444 (608)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence            566777788999999999999988886653211123345677888999999999999999999865533322211    1


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-GERKSAFFGVALNQMGLACV--QRYSINEAVELFEEARSIL  630 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~  630 (729)
                      ......+..++..++...+.-.....-+...++..... ..........++..+-..+.  ..-...++...+.++++.+
T Consensus       445 ~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~  524 (608)
T PF10345_consen  445 RELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMA  524 (608)
T ss_pred             hHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH
Confidence            12223334566667766555433222233333322222 11112222222222222221  2224458999999999988


Q ss_pred             -HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH---HHHHHHHHHHHhCCHhHHHHH
Q 004811          631 -EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD---EKRRLAELLKEAGRVRSRKAQ  706 (729)
Q Consensus       631 -~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~---~~~~La~~~~~~g~~~~A~~~  706 (729)
                       .....  ..-..-++..++..+. .|+..+.......+..+..+.  ++..+...   +-..++..+...|+.++|. .
T Consensus       525 ~~~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~  598 (608)
T PF10345_consen  525 NNKLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE-E  598 (608)
T ss_pred             HHhhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-H
Confidence             44322  2333335556666666 899999888888888877654  11222222   3346677789999999998 7


Q ss_pred             HHHHHH
Q 004811          707 SLETLL  712 (729)
Q Consensus       707 ~l~~al  712 (729)
                      ...+.-
T Consensus       599 ~~~~~~  604 (608)
T PF10345_consen  599 ARQQLD  604 (608)
T ss_pred             HHHHHH
Confidence            666554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=6.7e-09  Score=96.75  Aligned_cols=393  Identities=13%  Similarity=-0.019  Sum_probs=231.2

Q ss_pred             ccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc
Q 004811          199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL  278 (729)
Q Consensus       199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  278 (729)
                      ...+|..+|+.+.......|.....+-.+|.+|+...+ |..|.++|++.-..+         |.........+..+++.
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH---------PELEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHHHh
Confidence            34455566655556666677777777778888888776 777777777766554         33344445557777777


Q ss_pred             CChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 004811          279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE  358 (729)
Q Consensus       279 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  358 (729)
                      +.+..|+..........         ...-.++..-+.+.+..+++..+....++.       .   ....+....+.|.
T Consensus        92 ~i~ADALrV~~~~~D~~---------~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p---~en~Ad~~in~gC  152 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDNP---------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------P---SENEADGQINLGC  152 (459)
T ss_pred             cccHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcccccCcchHHHHHhc-------c---CCCccchhccchh
Confidence            77777777776654321         111222333445555556665555444331       0   1245667788899


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-------------
Q 004811          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-------------  425 (729)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------  425 (729)
                      +.++.|+++.|++-|+.+++...-..        ..-++++.++++.++++.|+++....+..-...             
T Consensus       153 llykegqyEaAvqkFqaAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi  224 (459)
T KOG4340|consen  153 LLYKEGQYEAAVQKFQAALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI  224 (459)
T ss_pred             eeeccccHHHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence            99999999999999999988764432        236788999999999999999887765432111             


Q ss_pred             -----CCC-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          426 -----DQD-----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS  495 (729)
Q Consensus       426 -----~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  495 (729)
                           ++.     .....+++..+.++++.++++.|.+.+...--..+      +...+..+.+++..-. .+++.+...
T Consensus       225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE------~elDPvTLHN~Al~n~-~~~p~~g~~  297 (459)
T KOG4340|consen  225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE------EELDPVTLHNQALMNM-DARPTEGFE  297 (459)
T ss_pred             chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc------ccCCchhhhHHHHhcc-cCCccccHH
Confidence                 000     12334556667788888888888775543221111      2233456666665433 355666666


Q ss_pred             HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHH-HHcCC
Q 004811          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMY-YMLGN  573 (729)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~-~~~g~  573 (729)
                      -+.-.+.+.         |.-..++.++-.+|++..-|+-|...+-       ..+.... .+...++.+-..+ ..+-.
T Consensus       298 KLqFLL~~n---------PfP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yly~LLdaLIt~qT~  361 (459)
T KOG4340|consen  298 KLQFLLQQN---------PFPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYLYDLLDALITCQTA  361 (459)
T ss_pred             HHHHHHhcC---------CCChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHHHHHHHHHHhCCCC
Confidence            555555551         1223456667777777665655554432       2211111 1122223333322 33456


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQM-GLACVQR-----YSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (729)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (729)
                      .++|.+-+......+..           -+..+ +.+....     .....|++-|++++++           ...++..
T Consensus       362 pEea~KKL~~La~~l~~-----------kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-----------YLPVlMa  419 (459)
T KOG4340|consen  362 PEEAFKKLDGLAGMLTE-----------KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-----------YLPVLMA  419 (459)
T ss_pred             HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence            66666655544332111           11111 1111111     1234566667777665           2336678


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          648 LAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      .|++|+...+|.-+.+.|+..++.+.
T Consensus       420 ~AkiyW~~~Dy~~vEk~Fr~SvefC~  445 (459)
T KOG4340|consen  420 QAKIYWNLEDYPMVEKIFRKSVEFCN  445 (459)
T ss_pred             HHHhhccccccHHHHHHHHHHHhhhc
Confidence            89999999999999999999998873

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.26  E-value=1.1e-10  Score=103.33  Aligned_cols=127  Identities=10%  Similarity=0.037  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH
Q 004811          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (729)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  616 (729)
                      ..+|++++++.+..          +..+|.++...|++++|+.+|++++.+        .+....++..+|.++...|++
T Consensus        13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence            45678888876643          456899999999999999999999876        233568999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004811          617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE  696 (729)
Q Consensus       617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~  696 (729)
                      ++|+..|++++.+        +|....+++++|.++..+|++++|+..|++++.+        .|+....+..++.+...
T Consensus        75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence            9999999999998        8999999999999999999999999999999987        57777777777776554


Q ss_pred             h
Q 004811          697 A  697 (729)
Q Consensus       697 ~  697 (729)
                      .
T Consensus       139 l  139 (144)
T PRK15359        139 V  139 (144)
T ss_pred             H
Confidence            3

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.24  E-value=1.1e-10  Score=103.23  Aligned_cols=112  Identities=18%  Similarity=0.132  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (729)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  657 (729)
                      ..+|++++++-+           ..+..+|.++...|++++|+.+|++++.+        +|....++..+|.++...|+
T Consensus        13 ~~~~~~al~~~p-----------~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLLSVDP-----------ETVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHHHcCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence            456777777521           13557899999999999999999999998        89999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +++|+..|++++.+        +|....+++++|.++...|++++|+ ..|+.++.++|+
T Consensus        74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~  124 (144)
T PRK15359         74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYA  124 (144)
T ss_pred             HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            99999999999986        6889999999999999999999999 999999999998

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.6e-07  Score=99.00  Aligned_cols=341  Identities=16%  Similarity=0.126  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 004811          222 PLLLKQARELISSGDNPQKALELAL--------RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (729)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~--------~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  293 (729)
                      .+|-.+|....+..+ .+-|.-+.-        +|++..++.    ++..    -...|.+...+|-.++|..+|++.-+
T Consensus       758 ~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~----~~e~----eakvAvLAieLgMlEeA~~lYr~ckR  828 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQN----GEED----EAKVAVLAIELGMLEEALILYRQCKR  828 (1416)
T ss_pred             HHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhC----Ccch----hhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            456666766666665 666655431        233322222    1111    12245566778888999998888653


Q ss_pred             cchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004811          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC  373 (729)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  373 (729)
                      .                 -.|-..|...|.+++|.+..+.-          +.-.....|++.|..+...++.+.|+++|
T Consensus       829 ~-----------------DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~Aleyy  881 (1416)
T KOG3617|consen  829 Y-----------------DLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYY  881 (1416)
T ss_pred             H-----------------HHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence            3                 23556788888888887765431          12345678899999999999999999999


Q ss_pred             HHHHHH----HHhcCCC-CCH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811          374 QMALDI----HKDNGSP-ASL-------EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (729)
Q Consensus       374 ~~al~~----~~~~~~~-~~~-------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (729)
                      +++-..    .+-..+. ..+       .....|...|......|+.+.|+.+|..|..              |+.+-.+
T Consensus       882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------------~fs~VrI  947 (1416)
T KOG3617|consen  882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------------YFSMVRI  947 (1416)
T ss_pred             HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------hhhheee
Confidence            876221    1110000 000       0023466778888888888888888877642              3334444


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHhcCCCCCChHH
Q 004811          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL------RIYEKPVPGVPPEE  515 (729)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~  515 (729)
                      .+.+|+.++|....++.             ....+.+.||+.|...|++.+|+.+|.+|-      +++++..   -...
T Consensus       948 ~C~qGk~~kAa~iA~es-------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~ 1011 (1416)
T KOG3617|consen  948 KCIQGKTDKAARIAEES-------------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR 1011 (1416)
T ss_pred             EeeccCchHHHHHHHhc-------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH
Confidence            44455555544332221             122344556666666666666666655443      2222210   0000


Q ss_pred             HHH--------HHHHHHHHHHhcc-hHHHHHHHHHH------------------HHHHHHhCCCCCCcHHHHHHHHHHHH
Q 004811          516 IAS--------GLTDVSSIYESMN-ELEQAIKLLQK------------------ALKIYNDAPGQQSTVAGIEAQMGVMY  568 (729)
Q Consensus       516 ~~~--------~~~~la~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~la~~~  568 (729)
                      .+.        -+...|..|...| ..+.|..+|.+                  ++++........ .-+.++..-+..+
T Consensus      1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~-sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG-SDPKLLRRCADFF 1090 (1416)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC-CCHHHHHHHHHHH
Confidence            000        0111222233333 34444443332                  344444332222 2245667778888


Q ss_pred             HHcCCHHHHHHHHH------HHHHHHHHhC-----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          569 YMLGNYSDSYDSFK------NAISKLRAIG-----------------ERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (729)
Q Consensus       569 ~~~g~~~~A~~~~~------~al~~~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  625 (729)
                      ....+|++|..++-      .|+.++...+                 .........++..+|.++.++|.|..|.+-|.+
T Consensus      1091 ~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence            88889999877654      4554433211                 111122345788999999999999999999888


Q ss_pred             HHHH
Q 004811          626 ARSI  629 (729)
Q Consensus       626 al~~  629 (729)
                      |-..
T Consensus      1171 AGdK 1174 (1416)
T KOG3617|consen 1171 AGDK 1174 (1416)
T ss_pred             hhhH
Confidence            7544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=8.7e-09  Score=94.18  Aligned_cols=209  Identities=14%  Similarity=0.094  Sum_probs=163.7

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (729)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (729)
                      +.++-+++....+.........++...++-.+..+....|+.+-|..++++....        .|....+...-|..+..
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lEa   98 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLEA   98 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHH
Confidence            4556666665555443333345566667777888888999999999998887666        46666777788999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (729)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (729)
                      .|++++|+++|+..++-         +|....++-..-.+...+|+.-+|++.+..-++.+...       ..+|..++.
T Consensus        99 ~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLae  162 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELAE  162 (289)
T ss_pred             hhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHHH
Confidence            99999999999998765         34445566666677788999999999999999988766       589999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDTLG  643 (729)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (729)
                      +|+..|+|++|.-++++.+=+        .|+....+..+|.+++-+|   ++.-|.++|.+++++        .|....
T Consensus       163 iY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~r  226 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNLR  226 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhHH
Confidence            999999999999999998865        3445677888888888776   678899999999999        777777


Q ss_pred             HHHHHHHHHHHc
Q 004811          644 VYSNLAGTYDAI  655 (729)
Q Consensus       644 ~~~~la~~~~~~  655 (729)
                      +++.+-.+....
T Consensus       227 al~GI~lc~~~l  238 (289)
T KOG3060|consen  227 ALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHHHHH
Confidence            777666555433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.20  E-value=1.3e-09  Score=119.96  Aligned_cols=156  Identities=11%  Similarity=0.003  Sum_probs=131.9

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004811          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (729)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (729)
                      +....+...+-+++.+.+.      .+....++.+||.+....|.+++|..+++.++++.|+.       ..+...++.+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~  129 (694)
T PRK15179         63 AAVHKPAAALPELLDYVRR------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRG  129 (694)
T ss_pred             hhhcchHhhHHHHHHHHHh------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHH
Confidence            3333444444455555433      34457889999999999999999999999999998877       5788899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (729)
Q Consensus       568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (729)
                      +.+.+++++|+..+++++..        .+..+.+++.+|.++.+.|++++|+.+|++++.-        +|+...++..
T Consensus       130 L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~  193 (694)
T PRK15179        130 VKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG  193 (694)
T ss_pred             HHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence            99999999999999999886        2335788999999999999999999999999986        8888899999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          648 LAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      +|.++...|+.++|...|+++++..
T Consensus       194 ~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        194 WAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.20  E-value=1.4e-09  Score=101.65  Aligned_cols=122  Identities=13%  Similarity=0.134  Sum_probs=107.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004811          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (729)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  650 (729)
                      .++.++++..+++++..        .+.....|..+|.+|...|++++|+..|++++.+        .|+...++..+|.
T Consensus        52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~  115 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT  115 (198)
T ss_pred             chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            56678888888888875        2234678999999999999999999999999999        8889999999999


Q ss_pred             HH-HHcCC--hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          651 TY-DAIGR--LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       651 ~~-~~~g~--~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++ ...|+  +++|...++++++.        +|....+++.||..+...|++++|+ ..++++++++|.
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~  176 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSP  176 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            74 67787  59999999999987        7888899999999999999999999 999999999886

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=5.1e-09  Score=109.38  Aligned_cols=253  Identities=17%  Similarity=0.142  Sum_probs=195.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHhcC----------CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004811          236 DNPQKALELALRAAKSFEIGAN----------GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL  305 (729)
Q Consensus       236 ~~~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  305 (729)
                      +-.+.+...-+.+.+.++....          ...-|.....-..++..+...|-...|+..|++.-             
T Consensus       359 RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle-------------  425 (777)
T KOG1128|consen  359 RTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------------  425 (777)
T ss_pred             cchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------------
Confidence            3355666555555554433210          11124456667788999999999999999998742             


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                          .|.....||...|+..+|.....+-++.         +..+..|..+|.+.....-|++|.++.+..-        
T Consensus       426 ----mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d~s~yEkawElsn~~s--------  484 (777)
T KOG1128|consen  426 ----MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHDPSLYEKAWELSNYIS--------  484 (777)
T ss_pred             ----HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccChHHHHHHHHHhhhhh--------
Confidence                3677889999999999999888776653         4555667777776655544555544443322        


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (729)
Q Consensus       386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (729)
                            +.+...+|......++|.++..+++..+.+      .+.....|+.+|.+..+.+++..|..+|..++.+    
T Consensus       485 ------arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL----  548 (777)
T KOG1128|consen  485 ------ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----  548 (777)
T ss_pred             ------HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----
Confidence                  234667777777899999999999988764      6777789999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (729)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (729)
                          .|+...+|++++..|...++-.+|...+.+|++.-         .....+|.|.-.+....|.+++|++.|.+.+.
T Consensus       549 ----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---------~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  549 ----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             ----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---------CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence                89999999999999999999999999999999983         22355677888888999999999999999998


Q ss_pred             HHHhCC
Q 004811          546 IYNDAP  551 (729)
Q Consensus       546 ~~~~~~  551 (729)
                      +.....
T Consensus       616 ~~~~~~  621 (777)
T KOG1128|consen  616 LRKKYK  621 (777)
T ss_pred             hhhhcc
Confidence            877654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.19  E-value=2.9e-09  Score=117.88  Aligned_cols=236  Identities=13%  Similarity=0.030  Sum_probs=171.8

Q ss_pred             CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004811          213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (729)
Q Consensus       213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (729)
                      ++.-.|....++..++..+...++ +++|+..++.+++..         |+....++.+|.++++.+++.++...  .++
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l   90 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI   90 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence            445678899999999999989987 999999999888764         55677889999999999999988877  666


Q ss_pred             ccchhhccccch----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004811          293 EIPVIEEGQEHA----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ  362 (729)
Q Consensus       293 ~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  362 (729)
                      .+........-.          ...-.+++.+|.||..+|++++|...|++++++        +|..+.++.++|..|..
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE  162 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence            664221100000          001146899999999999999999999999999        79999999999999999


Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (729)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (729)
                      . ++++|+.++.+|+...-........  -.  .....+...-.+++.-....++.+.    .-........+.-+=..|
T Consensus       163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~--~e--~W~k~~~~~~~d~d~f~~i~~ki~~----~~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        163 E-DKEKAITYLKKAIYRFIKKKQYVGI--EE--IWSKLVHYNSDDFDFFLRIERKVLG----HREFTRLVGLLEDLYEPY  233 (906)
T ss_pred             h-hHHHHHHHHHHHHHHHHhhhcchHH--HH--HHHHHHhcCcccchHHHHHHHHHHh----hhccchhHHHHHHHHHHH
Confidence            9 9999999999999876443321111  00  1111222222333333333332221    111334455566667889


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (729)
                      ...++|++++.+++.++++        .+....+...++.+|.
T Consensus       234 ~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        234 KALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH
Confidence            9999999999999999998        7778888999999887

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.19  E-value=1.6e-09  Score=119.31  Aligned_cols=158  Identities=14%  Similarity=0.091  Sum_probs=135.6

Q ss_pred             chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (729)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (729)
                      +....+...+-+++.+..+.+    ....++..||.+....|.+++|..+++.++++.        +....++..++.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L  130 (694)
T PRK15179         63 AAVHKPAAALPELLDYVRRYP----HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGV  130 (694)
T ss_pred             hhhcchHhhHHHHHHHHHhcc----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHH
Confidence            333344444445555544432    225788999999999999999999999999973        33567899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      .+.+++++|+..+++++..        .|+...+++.+|.++.++|++++|+.+|++++.-        +|+...++..+
T Consensus       131 ~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~  194 (694)
T PRK15179        131 KRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGW  194 (694)
T ss_pred             HHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHH
Confidence            9999999999999999999        8999999999999999999999999999999963        78999999999


Q ss_pred             HHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          691 AELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       691 a~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      |.++...|+.++|. ..|+++++...+
T Consensus       195 a~~l~~~G~~~~A~-~~~~~a~~~~~~  220 (694)
T PRK15179        195 AQSLTRRGALWRAR-DVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHcCCHHHHH-HHHHHHHHhhCc
Confidence            99999999999999 999999988765

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.16  E-value=2.1e-05  Score=87.76  Aligned_cols=423  Identities=14%  Similarity=0.031  Sum_probs=263.8

Q ss_pred             hHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 004811          281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA-MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA  359 (729)
Q Consensus       281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  359 (729)
                      ...|+.+++-+++-.     .-.|...+.+++.+|.++. ...+++.|..++.+++.+.++  ..-......+...++.+
T Consensus        37 I~~ai~CL~~~~~~~-----~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i  109 (608)
T PF10345_consen   37 IATAIKCLEAVLKQF-----KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARI  109 (608)
T ss_pred             HHHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHH
Confidence            345777777777522     3344566778999999988 789999999999999988754  11112234566778899


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM-GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (729)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (729)
                      +.+.+... |...++++++........  . ...++..+ ...+...+++..|++.++.........++......+....
T Consensus       110 ~~~~~~~~-a~~~l~~~I~~~~~~~~~--~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~  185 (608)
T PF10345_consen  110 YFKTNPKA-ALKNLDKAIEDSETYGHS--A-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE  185 (608)
T ss_pred             HHhcCHHH-HHHHHHHHHHHHhccCch--h-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence            98888777 999999999988774321  1 12223333 3333334899999999999988777667766666677777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhcCCCCC---
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTN--KGENHPAVASVFVRLADM--YNRTGKLRESKSYCENALRIYEKPVPGV---  511 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~---  511 (729)
                      +.+....+..+++++.++++.......  .+..++....++..+-.+  +...|++..+...+++.-..+.......   
T Consensus       186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~  265 (608)
T PF10345_consen  186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWP  265 (608)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            888888898999999999998776654  111234444555555444  4556777777766655444333221000   


Q ss_pred             ------------------------------ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC-C----CCc
Q 004811          512 ------------------------------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-Q----QST  556 (729)
Q Consensus       512 ------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~----~~~  556 (729)
                                                    ...-.+-+|..-|......+..++|.+++.++++...+... .    ...
T Consensus       266 ~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s  345 (608)
T PF10345_consen  266 SWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES  345 (608)
T ss_pred             CcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC
Confidence                                          00112233444455566677777999999999998877541 0    001


Q ss_pred             --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          557 --------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE-RKSAFFGVALNQMGLACVQRYSINEAVE  621 (729)
Q Consensus       557 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~  621 (729)
                                    ...++..++.+.+-.+++..|......+.......+. ......+.+++..|..+...|+.+.|..
T Consensus       346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~  425 (608)
T PF10345_consen  346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY  425 (608)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence                          1233456677788899999999999988887665543 1223456778888999999999999999


Q ss_pred             HHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-CCChhHHHHHHHHHHHHHH-
Q 004811          622 LFEEARSILEQECGP---YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEKRRLAELLKE-  696 (729)
Q Consensus       622 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~~~~La~~~~~-  696 (729)
                      +|.+.+-.......+   ...-..-+..++..++...+........+...++..+.... ..+.....++..+-.++.. 
T Consensus       426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~  505 (608)
T PF10345_consen  426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF  505 (608)
T ss_pred             HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence            999555333222222   12223335567777887766544422222333322211111 1222333333333223322 


Q ss_pred             -hCCHhHHHHHHHHHHHhhc
Q 004811          697 -AGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       697 -~g~~~~A~~~~l~~al~~~  715 (729)
                       .-...++. ..+..+++..
T Consensus       506 ~~~~~ne~k-~~l~~~L~~~  524 (608)
T PF10345_consen  506 EPFSSNEAK-RHLQEALKMA  524 (608)
T ss_pred             CccccHHHH-HHHHHHHHHH
Confidence             22233666 7777776654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.10  E-value=1.2e-08  Score=106.61  Aligned_cols=224  Identities=15%  Similarity=0.140  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (729)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (729)
                      ......++..+...|-...|+..|++.                ..|.....||...|+..+|..+..+-++..   .+  
T Consensus       398 Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~lek~---~d--  456 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELEKD---PD--  456 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhcCC---Cc--
Confidence            344678999999999999998888764                345556778888999999999888777621   11  


Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (729)
                          +..|..+|.+....--|++|.++.+..            .+.+...+|......++|.++..+++..+++      
T Consensus       457 ----~~lyc~LGDv~~d~s~yEkawElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------  514 (777)
T KOG1128|consen  457 ----PRLYCLLGDVLHDPSLYEKAWELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEI------  514 (777)
T ss_pred             ----chhHHHhhhhccChHHHHHHHHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhc------
Confidence                244666777666666666666665432            2335566777778899999999999999999      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                        +|.....|+.+|.+..+.+++..|..+|..++.+         .|+...+|++++..|...++-.+|...+.+|++..
T Consensus       515 --nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  515 --NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             --CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence              8999999999999999999999999999999998         66678999999999999999999999999999876


Q ss_pred             HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      .++       ..+|-+.-.+..+.|.+++|+..|.+.+.+-+...
T Consensus       584 ~~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  584 YQH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             CCC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            433       24556677788899999999999999998765544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=3.3e-08  Score=90.47  Aligned_cols=195  Identities=16%  Similarity=0.117  Sum_probs=151.6

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004811          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (729)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (729)
                      .+.++-+++....+.....-   ...++...++-.+..+....|+.+-|..++++....+|..       ..+...-|..
T Consensus        26 rnseevv~l~~~~~~~~k~~---~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-------~RV~~lkam~   95 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSG---ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-------KRVGKLKAML   95 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhc---ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-------hhHHHHHHHH
Confidence            44556666666665554432   1234456677788888889999999999999887777554       2444566888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (729)
Q Consensus       568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (729)
                      +...|++++|+++|+..++-       + +....++-..-.+...+|+.-+|++.+...++.        .+...++|..
T Consensus        96 lEa~~~~~~A~e~y~~lL~d-------d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~e  159 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLED-------D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHE  159 (289)
T ss_pred             HHHhhchhhHHHHHHHHhcc-------C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHH
Confidence            89999999999999988762       2 223445555556677888888999999999988        6777889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHhhccc
Q 004811          648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR---VRSRKAQSLETLLDANSR  717 (729)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~---~~~A~~~~l~~al~~~p~  717 (729)
                      |+.+|...|+|++|.-+|++++-+        .|.....+.+||.++.-+|-   +.-|. ++|.++++++|.
T Consensus       160 LaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~ar-kyy~~alkl~~~  223 (289)
T KOG3060|consen  160 LAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELAR-KYYERALKLNPK  223 (289)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhChH
Confidence            999999999999999999999865        68888889999999888774   44677 899999999994

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.08  E-value=7.4e-09  Score=96.85  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=121.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (729)
Q Consensus       398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (729)
                      -+..|+..|+++......++..        .+.         .-+...++.++++..+++++..        +|.....|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~--------~~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~w   76 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA--------DPL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQW   76 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh--------Ccc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHHH
Confidence            4557888899887654432111        000         0112367788999999999998        89999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH-Hhcch--HHHHHHHHHHHHHHHHhCCCCC
Q 004811          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNE--LEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      ..+|.+|...|++++|+..|++++.+         .|....++..+|.++ ...|+  +++|...++++++..+..    
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l---------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~----  143 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQL---------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE----  143 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----
Confidence            99999999999999999999999999         444577889999974 67777  599999999999998776    


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                         ..++..+|..+...|++++|+.+|++++++.
T Consensus       144 ---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        144 ---VTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence               4788999999999999999999999999874

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=5.6e-10  Score=105.03  Aligned_cols=101  Identities=22%  Similarity=0.343  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      +..+-.-|.-+.+.++|.+|+..|.+||++        +|..+..|.+.|.+|.++|.++.|++..+.++.+        
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------  144 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------  144 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence            445566678888899999999999999999        9999999999999999999999999999999988        


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|.+..+|.+||.+|..+|++++|+ +.|+++|+++|+
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~-~aykKaLeldP~  181 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAI-EAYKKALELDPD  181 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHH-HHHHhhhccCCC
Confidence            8999999999999999999999999 999999999998

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.05  E-value=1.6e-08  Score=93.67  Aligned_cols=168  Identities=15%  Similarity=0.161  Sum_probs=141.4

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      ..|....+ ..++..+...|+-+.+..+..++...        ++.....+..+|...+..|+|.+|+..+.++..+   
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---  129 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---  129 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence            45555566 88899999999999999988887665        6666677777999999999999999999999988   


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                            .|..+.+|..+|.+|.+.|++++|...|.+++++.+..       ..+..++|..|.-.|+++.|..++..+..
T Consensus       130 ------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         130 ------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence                  44557889999999999999999999999999998876       36788999999999999999999998876


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      .        +.....+..+++.+....|++++|.....+-+
T Consensus       197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             C--------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            3        12234678899999999999999987765533

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.04  E-value=1.2e-08  Score=88.08  Aligned_cols=110  Identities=16%  Similarity=0.087  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      ....+.+|..+...|++++|...|+-...+        .+.....|.+||.++..+|+|.+|+..|.+|+.+        
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--------   98 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--------   98 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence            455678999999999999999999988876        3446789999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR  688 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~  688 (729)
                      +|+....++++|.|+...|+.+.|+..|+.++..+     ..+|.......
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~-----~~~~~~~~l~~  144 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC-----GEVSEHQILRQ  144 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----ccChhHHHHHH
Confidence            88889999999999999999999999999999987     24566554443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.03  E-value=3.5e-09  Score=93.40  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      .......+|.++...|++++|...|++++..        +|....++..+|.++..+|++++|+.+|++++.+       
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   80 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-------   80 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            4567889999999999999999999999998        7888899999999999999999999999999876       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                       +|.....++.+|.++...|++++|. ..|+.+++++|+
T Consensus        81 -~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  117 (135)
T TIGR02552        81 -DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGE  117 (135)
T ss_pred             -CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccc
Confidence             5888899999999999999999999 999999999998

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.03  E-value=2.5e-07  Score=87.37  Aligned_cols=183  Identities=17%  Similarity=0.187  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      ...++..|..++..|+|.+|+..|++.+..+     +..+....+.+.+|.++...|++++|+..+++.+..+..     
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-----   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-----   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence            4567889999999999999999999998874     346778899999999999999999999999999999654     


Q ss_pred             ChHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          512 PPEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (729)
                       ++....+++.+|.++..+.           ...+|+..|+..+..+|+..                     -..+|...
T Consensus        75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~  132 (203)
T PF13525_consen   75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR  132 (203)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred             -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence             5567788888888876543           34578888888888877652                     12334333


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004811          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (729)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (729)
                      +..+...           .+.--..+|..|.+.|.+..|+..++.+++.+     |+.+....++..++.+|..+|..+.
T Consensus       133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence            3333322           33445567999999999999999999999883     3356666789999999999999885


Q ss_pred             HH
Q 004811          661 AI  662 (729)
Q Consensus       661 A~  662 (729)
                      |.
T Consensus       197 a~  198 (203)
T PF13525_consen  197 AD  198 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.02  E-value=2.2e-08  Score=92.72  Aligned_cols=167  Identities=17%  Similarity=0.148  Sum_probs=141.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .|....+ ..++..+...|+-+.+..+..++...         ++.....+..+|......|++.+|+..++++..+.+.
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~  132 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT  132 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence            5766777 89999999999999998888886655         2223445555899999999999999999999998776


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .       ..+|..+|.+|.+.|+++.|...|.+++++...        ...+.+++|..+.-.|+++.|..++..+...
T Consensus       133 d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         133 D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAPN--------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            6       578899999999999999999999999998432        3468999999999999999999999999876


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                              -+....+..+|+.+...+|++++|.....+-+
T Consensus       198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             --------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence                    45566788999999999999999988776544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.01  E-value=2.3e-09  Score=84.02  Aligned_cols=76  Identities=28%  Similarity=0.386  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      +..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.+|..+|++++|+.++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            346789999999999999999999999999999 6666767788899999999999999999999999999999875

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=4.9e-09  Score=98.81  Aligned_cols=120  Identities=23%  Similarity=0.239  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      +.-+-.-|.-+.+.++|.+|+..|.+||.+.        +..+..|.+.|.+|.++|.++.|++-++.|+.+        
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------  144 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD--------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------  144 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence            4445567888899999999999999999972        335788999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR  701 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~  701 (729)
                      +|....+|..||.+|..+|++++|++.|++++++        +|++...+.+|..+-..++...
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999988        6888888888887777776655

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.00  E-value=7.7e-06  Score=88.45  Aligned_cols=341  Identities=12%  Similarity=0.034  Sum_probs=220.8

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004811          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE-LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (729)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  295 (729)
                      +|...+.+..-+..|...|. +.+||++.-.|-+           |. .+..+...+.-.+..++..--..+....-.  
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d-----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~--  408 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD-----------PEMAADLLEQLEWQLFNGSELSLLLAWLKALPA--  408 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC-----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCH--
Confidence            34556666666666667775 8888888665532           22 233444455556666665444333322110  


Q ss_pred             hhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004811          296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQ  374 (729)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  374 (729)
                        ..-..+|    ......++......++.+|..+..++....+... +......+......|.+....|++++|+++.+
T Consensus       409 --~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar  482 (894)
T COG2909         409 --ELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLAR  482 (894)
T ss_pred             --HHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence              0001111    2345677888889999999999988876643310 00112344555667788889999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA  454 (729)
Q Consensus       375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  454 (729)
                      .++...+....   ...+.++..+|.+..-.|++++|+.+..++.+.....+.......+.+..+.++..+|+...|  .
T Consensus       483 ~al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a--~  557 (894)
T COG2909         483 LALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA--E  557 (894)
T ss_pred             HHHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH--H
Confidence            99998877643   334577889999999999999999999999999888888787888888899999999943333  2


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH
Q 004811          455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (729)
Q Consensus       455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (729)
                      -.++.........+..+.........+.++...-+++.+..-....+++.....  ........+++.|+.++...|+++
T Consensus       558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~  635 (894)
T COG2909         558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLD  635 (894)
T ss_pred             HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHH
Confidence            233333322222222333223333344444444447777777777777654432  112222333468999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (729)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (729)
                      +|...+.+...............+.++.........+|+...|.....+.
T Consensus       636 ~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         636 KALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            99999999998887663222344455555556667889999988877663

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.00  E-value=7.4e-09  Score=89.47  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      ....++.+|..+...|++++|...|+-...+        +|.....|++||.++..+|++++|+..|.+++.+       
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence            3466788899999999999999999999999        9999999999999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                       +|+.+.+++++|.++...|+.+.|. ..|+.++...
T Consensus        99 -~~ddp~~~~~ag~c~L~lG~~~~A~-~aF~~Ai~~~  133 (157)
T PRK15363         99 -KIDAPQAPWAAAECYLACDNVCYAI-KALKAVVRIC  133 (157)
T ss_pred             -CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHh
Confidence             6888899999999999999999999 9999999887

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.99  E-value=2.2e-09  Score=84.16  Aligned_cols=77  Identities=34%  Similarity=0.544  Sum_probs=71.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      ||+.+.++.++|.+|..+|++++|+.+|++++++ .+.+|+.+|..+.++.++|.++...|++++|+ .++++++++..
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~-~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL-EYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhc
Confidence            5888999999999999999999999999999999 77888888999999999999999999999999 99999998753

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.97  E-value=2.7e-08  Score=91.21  Aligned_cols=119  Identities=14%  Similarity=0.084  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (729)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (729)
                      .+..++.+|.++...|++++|+..|++++.+..     .+...+.++.++|.++...|++++|+.+|++++.+       
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-------  101 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-------  101 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            467788999999999999999999999998732     22334568999999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004811          637 YHPDTLGVYSNLAGTYD-------AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR  688 (729)
Q Consensus       637 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~  688 (729)
                       +|.....+..+|.++.       .+|++++|+..+.+++..+++.++.+++....+..
T Consensus       102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~  159 (168)
T CHL00033        102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN  159 (168)
T ss_pred             -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence             6766677777777777       89999999999999999999998877665544333

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.96  E-value=2.2e-07  Score=104.13  Aligned_cols=444  Identities=15%  Similarity=0.104  Sum_probs=294.9

Q ss_pred             HHHHHHHHHHHHHH-HHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHH
Q 004811          238 PQKALELALRAAKS-FEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (729)
Q Consensus       238 ~~~A~~~~~~Al~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  316 (729)
                      .+.|++++..|+-- ...+..-...|+.   .+-++..+...+++.+|...=++++++.+...+..+|. .+..+..++.
T Consensus       640 ~~dav~~~~~al~k~~~~~~~~~fnp~~---f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv  715 (1236)
T KOG1839|consen  640 LDDAVKYATKALVKLVAVCGPYGFNPAG---FYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSV  715 (1236)
T ss_pred             hHHHHHHHHHHHHHHHhhhcccccCccc---cccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhccccce
Confidence            34577776555533 3333222222332   33337777888999999999999999887777877764 4556777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004811          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR  396 (729)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  396 (729)
                      .++....+.+|+.+-.+++.+.-.+.+..+|..+..+.+.+..-...+  +-+.+.+..+++-........+...+.. .
T Consensus       716 ~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H  792 (1236)
T KOG1839|consen  716 FPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-H  792 (1236)
T ss_pred             eeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-H
Confidence            777888889999999999988877777667766654444333322223  7777888888887777666655555444 3


Q ss_pred             HHHHHHHH---hCCHHHHHHHHHHHHHHH----HhCCCChh---------------------------HHHHHHHHHHHH
Q 004811          397 LMGLICET---KGDHEAALEHLVLASMTM----IANDQDAE---------------------------VASVDCSIGDTY  442 (729)
Q Consensus       397 ~lg~~~~~---~g~~~~A~~~~~~al~~~----~~~~~~~~---------------------------~~~~~~~la~~~  442 (729)
                      .+..++..   ..+...+....-++....    ......+.                           ...-...+..+.
T Consensus       793 ~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~  872 (1236)
T KOG1839|consen  793 ALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETIL  872 (1236)
T ss_pred             HHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHh
Confidence            33332222   222222222111111000    00000000                           000001111122


Q ss_pred             HHcCCHHHHH---HHHHHHHHHHHHhcCC-----------------------CCh--hHHHHHHHHHHHHHHcCCHHHHH
Q 004811          443 LSLSRYDEAG---FAYQKALTAFKTNKGE-----------------------NHP--AVASVFVRLADMYNRTGKLRESK  494 (729)
Q Consensus       443 ~~~g~~~~A~---~~~~~al~~~~~~~~~-----------------------~~~--~~~~~~~~la~~~~~~g~~~~A~  494 (729)
                      ...|...-+.   ..+..-+....+....                       ..|  ..+.-....+......|.+.+|.
T Consensus       873 ~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~  952 (1236)
T KOG1839|consen  873 LKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAY  952 (1236)
T ss_pred             hhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhh
Confidence            2222211111   1111111111111100                       011  12233344566666778888888


Q ss_pred             HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCC
Q 004811          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGN  573 (729)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~  573 (729)
                      + .-+++.++.... +..++.....|..|+.++...+++++|+.+-.++.-+.....|... .....+.+++...+..++
T Consensus       953 ~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen  953 E-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred             h-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence            8 777777766543 5568889999999999999999999999999999988887767654 556778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (729)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (729)
                      ...|...+.++..+..-..+..++..+.+..+++.++...++++.|+.+++.|+.......++..-.....+..+++++.
T Consensus      1031 ~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred             ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence            99999999999988766655555557778889999999999999999999999999999999888888889999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811          654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      .++++..|....+....++...+|++|+........+
T Consensus      1111 s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence            9999999999999999999999999998876654433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.95  E-value=2e-08  Score=88.62  Aligned_cols=111  Identities=17%  Similarity=0.252  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004811          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (729)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (729)
                      .|++++...+..       ......+|..+...|++++|...|++++...        +....++..+|.++...|++++
T Consensus         5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~   69 (135)
T TIGR02552         5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEE   69 (135)
T ss_pred             hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence            455555554433       4667889999999999999999999988752        2246789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      |+.+|++++.+        +|.....++.+|.+|...|++++|+.+|++++++.
T Consensus        70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            99999999998        78888899999999999999999999999999873

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.95  E-value=3.6e-07  Score=88.32  Aligned_cols=188  Identities=12%  Similarity=0.068  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      ...++..|..+...|+|++|+..|++++...     +..+....+...+|.+|.+.+++++|+..+++.++....     
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-----  101 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----  101 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-----
Confidence            4456778899999999999999999998873     234566667799999999999999999999999999544     


Q ss_pred             ChHHHHHHHHHHHHHHHhcc------------------hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004811          512 PPEEIASGLTDVSSIYESMN------------------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (729)
                       ++....+++.+|.++...+                  ...+|+..|++.++.+|+..                     -
T Consensus       102 -~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~---------------------y  159 (243)
T PRK10866        102 -HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ---------------------Y  159 (243)
T ss_pred             -CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh---------------------h
Confidence             6677888999998764443                  13467777777777776551                     0


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (729)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (729)
                      ..+|...+..+...           .+.--..+|..|.+.|.|..|+.-++.+++.+     |+.+...+++..++..|.
T Consensus       160 a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~  223 (243)
T PRK10866        160 TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR  223 (243)
T ss_pred             HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence            12333333222222           23344577899999999999999999998873     336777889999999999


Q ss_pred             HcCChHHHHHHHHH
Q 004811          654 AIGRLDDAIEILEF  667 (729)
Q Consensus       654 ~~g~~~~A~~~~~~  667 (729)
                      .+|..++|..+...
T Consensus       224 ~lg~~~~a~~~~~~  237 (243)
T PRK10866        224 QLQLNAQADKVAKI  237 (243)
T ss_pred             HcCChHHHHHHHHH
Confidence            99999999887654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=3.9e-06  Score=76.59  Aligned_cols=221  Identities=14%  Similarity=0.056  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (729)
                      +..|..-+..|....+|++|...+.+|......+......+..+-..+.+...+..+.++..+|++|..++.+.+   .|
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---sp  107 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SP  107 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---Cc
Confidence            445666677788888999999999999888777777777888888999999999999999999999999999987   56


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (729)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (729)
                      +.+..-...|--....-++++|+.+|++++.+.+.   ++........+...++++.+..++++|-..+.+-..+.... 
T Consensus       108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~-  183 (308)
T KOG1585|consen  108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC-  183 (308)
T ss_pred             chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence            66666566666667788999999999999999877   44445556778888999999999999998888776665544 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE  624 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  624 (729)
                      .........+.....+|+...+|..|..+|+...++    +....+....++.+|-..| ..|+.++....+.
T Consensus       184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            223333445556666777788999999999886554    2222223345555555444 4567776655543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.92  E-value=1.4e-05  Score=83.65  Aligned_cols=224  Identities=16%  Similarity=0.196  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQK------ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .|-.-|.+|.+..++++|+++|++      ++++.+-.+   .......-...|.-+...|+++.|+..|-++-.+.+. 
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka-  738 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA-  738 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence            344557777778888888888764      455544433   2333444455677788889999998888766444211 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                                      ........+|.+|+..++.....        ......|-.++.-|...|+|+.|.++|.++-..
T Consensus       739 ----------------ieaai~akew~kai~ildniqdq--------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~  794 (1636)
T KOG3616|consen  739 ----------------IEAAIGAKEWKKAISILDNIQDQ--------KTASGYYGEIADHYANKGDFEIAEELFTEADLF  794 (1636)
T ss_pred             ----------------HHHHhhhhhhhhhHhHHHHhhhh--------ccccccchHHHHHhccchhHHHHHHHHHhcchh
Confidence                            12223344555665554432221        111233456677778888888888777654221


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH--
Q 004811          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEIL--  665 (729)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--  665 (729)
                                      ..-...|-+.|+|+.|.++-+++..         .......|..-+.-+...|+|.+|..+|  
T Consensus       795 ----------------~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyit  849 (1636)
T KOG3616|consen  795 ----------------KDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYIT  849 (1636)
T ss_pred             ----------------HHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence                            1123445566777777665555432         1223334445555555555555554444  


Q ss_pred             ----HHHHHHHHH---------HcCCCChhH-HHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811          666 ----EFVVGIREE---------KLGTANPDV-DDEKRRLAELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       666 ----~~al~~~~~---------~~g~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (729)
                          .++++++.+         +.+..||+. .+.+..+|.-|...|+...|. ..|-++
T Consensus       850 i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae-~~flea  908 (1636)
T KOG3616|consen  850 IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE-EHFLEA  908 (1636)
T ss_pred             ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH-HHHHhh
Confidence                233333332         222344543 467788999999999999998 655544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.90  E-value=1.6e-05  Score=83.24  Aligned_cols=227  Identities=16%  Similarity=0.189  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHH------hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          267 CLHVIAAIYCSLGQYNEAIPVLEQ------SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (729)
Q Consensus       267 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (729)
                      .|...|.+|.+..++++|+++|.+      ++++.+...    |...+..--..|.-+...|+++.|+.+|-++-.+.+.
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            344556667777778888887765      333322111    1222233445677788888899888888776544222


Q ss_pred             HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                                      ........+|.+|+..+...-+.....         ..|-.++.-|...|+|+.|.++|.++- 
T Consensus       739 ----------------ieaai~akew~kai~ildniqdqk~~s---------~yy~~iadhyan~~dfe~ae~lf~e~~-  792 (1636)
T KOG3616|consen  739 ----------------IEAAIGAKEWKKAISILDNIQDQKTAS---------GYYGEIADHYANKGDFEIAEELFTEAD-  792 (1636)
T ss_pred             ----------------HHHHhhhhhhhhhHhHHHHhhhhcccc---------ccchHHHHHhccchhHHHHHHHHHhcc-
Confidence                            122233456777776665443332222         225667888889999999999887652 


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH---
Q 004811          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC---  497 (729)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---  497 (729)
                                   ....--.+|.+.|+|.+|.+.-.+...         .......|...+.-+-..|+|.+|..+|   
T Consensus       793 -------------~~~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti  850 (1636)
T KOG3616|consen  793 -------------LFKDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITI  850 (1636)
T ss_pred             -------------hhHHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence                         122234567788899888776555432         3445666777777788888888887776   


Q ss_pred             ---HHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811          498 ---ENALRIYEKPVPGV---------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (729)
Q Consensus       498 ---~~al~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (729)
                         .+++.++.+....+         .......+...+|.-|...|+...|...|-++-.
T Consensus       851 ~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  851 GEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             cCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence               44555554432111         1112334555666777777777777766665543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.89  E-value=5.2e-07  Score=85.22  Aligned_cols=183  Identities=18%  Similarity=0.241  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      ...++..|..++..|+|.+|+..|++.+...     +..+. ...+.+.+|.+++..|++++|+..|++.+...+.    
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence            5568889999999999999999999998875     33332 3456899999999999999999999999988644    


Q ss_pred             CCchHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 004811          345 TDPRVGETCRYLAEAHVQAL-----------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~  413 (729)
                       ++....+++.+|.+++...           ...+|+..|+..+..+|+..-.                      .+|..
T Consensus        75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~~  131 (203)
T PF13525_consen   75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAKK  131 (203)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHHH
T ss_pred             -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHHH
Confidence             6788899999999877653           2357888888888888776421                      12222


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (729)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (729)
                      .+..+.         ...+.--..+|..|...|.|..|+..++.+++.+.     +.+....++..++..|..+|..+.|
T Consensus       132 ~l~~l~---------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  132 RLAELR---------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHH---------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHH---------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence            221111         11223345678999999999999999999988743     3566677889999999999988754


Q ss_pred             H
Q 004811          494 K  494 (729)
Q Consensus       494 ~  494 (729)
                      .
T Consensus       198 ~  198 (203)
T PF13525_consen  198 D  198 (203)
T ss_dssp             H
T ss_pred             H
Confidence            3

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.86  E-value=3e-08  Score=98.20  Aligned_cols=258  Identities=16%  Similarity=0.113  Sum_probs=155.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (729)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (729)
                      .-++..|+|..++.-+..      ..............+.+++..+|+++..+.-...          ...|. ..+...
T Consensus         9 rn~fy~G~Y~~~i~e~~~------~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~   71 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASL------KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL   71 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHC------HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhc------cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence            345667888888865541      1223445566677788889999987765533211          11222 334455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (729)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (729)
                      ++..+...++.+.++..++..       ................|.++...|++++|++.+.+.-     .       ..
T Consensus        72 la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~-------lE  132 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----S-------LE  132 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----C-------HH
T ss_pred             HHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----c-------cc
Confidence            555554434444443333221       1111121223345566778888899998888876531     0       23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      .......+|+..++++.|.+.++.+.++    .+ +   ...+....+++.+..|  ++.+|...|++..+.        
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~e-D---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------  196 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI----DE-D---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------  196 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC----SC-C---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-c---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence            4445677888999999998888765432    11 1   1122222333444444  588888888886443        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .+....++..+|.++..+|+|++|...+++++.        .+|...+++.+++.+....|+..++..+++.++...+|+
T Consensus       197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence            345566788899999999999999999888874        367788889999999999998855443788888878875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.85  E-value=1.9e-06  Score=83.26  Aligned_cols=190  Identities=11%  Similarity=0.078  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (729)
                      ....++..|..+...|++++|+..|++++.....      .+....+...+|.+|...+++++|+..+++.++..|+++ 
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-
Confidence            4556778899999999999999999999998433      456677789999999999999999999999999988774 


Q ss_pred             CCCcHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC
Q 004811          553 QQSTVAGIEAQMGVMYYMLG---------------NY---SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (729)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  614 (729)
                         ....+++.+|.++...+               |.   .+|+..|++.++.++.     ...                
T Consensus       104 ---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~y----------------  159 (243)
T PRK10866        104 ---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQY----------------  159 (243)
T ss_pred             ---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----Chh----------------
Confidence               33567778887764443               22   2344555555544321     111                


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (729)
                       ..+|...+..+...           .+.--+.+|..|.+.|.+.-|+.-++.+++-+     |..+...+++..++..|
T Consensus       160 -a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay  222 (243)
T PRK10866        160 -TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY  222 (243)
T ss_pred             -HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence             12233222222221           22233578999999999999999999999877     77788999999999999


Q ss_pred             HHhCCHhHHHHHHHHHH
Q 004811          695 KEAGRVRSRKAQSLETL  711 (729)
Q Consensus       695 ~~~g~~~~A~~~~l~~a  711 (729)
                      ...|..++|. .....+
T Consensus       223 ~~lg~~~~a~-~~~~~l  238 (243)
T PRK10866        223 RQLQLNAQAD-KVAKII  238 (243)
T ss_pred             HHcCChHHHH-HHHHHH
Confidence            9999999998 655443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.83  E-value=6e-08  Score=83.33  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (729)
                      .+++.+|..+...|++++|+..|++++..     .++++....+++.+|.++...|++++|+.+|++++...     +.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            46788999999999999999999999887     22234446789999999999999999999999999764     555


Q ss_pred             hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +....++..+|.++...|++++|. ..++.+++..|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~  108 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPG  108 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcC
Confidence            556788999999999999999999 999999999997

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.82  E-value=7.4e-08  Score=88.33  Aligned_cols=121  Identities=17%  Similarity=0.062  Sum_probs=95.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      ......+++.+|.++...|++++|+..|++++.+..      ++.....++.++|.++...|++++|+.++++++.+.+.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            345678889999999999999999999999999832      23445678999999999999999999999999998655


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (729)
                      .......++.++..+|..+...|+++.|+..+.+++..+++.....+
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p  151 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP  151 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            43222234445555555555999999999999999988777654444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.82  E-value=4.6e-07  Score=83.37  Aligned_cols=111  Identities=17%  Similarity=0.250  Sum_probs=89.8

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      ..+..++.+|..+...|++++|+.+|++++.+...     +.....++..+|.++...|++++|+.+|++++..      
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  101 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------  101 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            44667899999999999999999999999986432     1223578999999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcCCC
Q 004811          636 PYHPDTLGVYSNLAGTYDAIGR-------LDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~g~~  679 (729)
                        +|.....+..+|.+|...|+       ++.|+..++++++.+++.+..+
T Consensus       102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence              78888888899999987665       6666666666766666655443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.81  E-value=3e-08  Score=98.27  Aligned_cols=253  Identities=17%  Similarity=0.103  Sum_probs=158.5

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (729)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (729)
                      -++..|+|..++.-+.  +  ...    ...........+.+.+..+|+++..+.-+..       .. .|. ..+...+
T Consensus        10 n~fy~G~Y~~~i~e~~--~--~~~----~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~~~-l~av~~l   72 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS--L--KSF----SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-SPE-LQAVRLL   72 (290)
T ss_dssp             HHHCTT-HHHHCHHHH--C--HTS----TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-SCC-CHHHHHH
T ss_pred             HHHHhhhHHHHHHHhh--c--cCC----CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-Chh-HHHHHHH
Confidence            4566889888886655  1  111    1123345677889999999998877654421       12 222 2334555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (729)
                      +..+...++.+.++..++..+.-      .............|.++...|++++|+..+.+.              ....
T Consensus        73 a~y~~~~~~~e~~l~~l~~~~~~------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~lE  132 (290)
T PF04733_consen   73 AEYLSSPSDKESALEELKELLAD------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSLE  132 (290)
T ss_dssp             HHHHCTSTTHHCHHHHHHHCCCT------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCHH
T ss_pred             HHHHhCccchHHHHHHHHHHHHh------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Cccc
Confidence            55554444555554443332211      112233455667788888899999988877653              1134


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCC
Q 004811          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKS  596 (729)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~  596 (729)
                      .......+|..+++++.|.+.++.+.++     .++..  .+....+++.+..|  ++.+|..+|++..+.+        
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--------  197 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--------  197 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--------
Confidence            5556778999999999999888776543     22221  22223344444555  5889999998854421        


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI  671 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  671 (729)
                      .....+++.++.++..+|+|++|...+++++..        +|....++.+++.+...+|+. +.+.+++.+....
T Consensus       198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            113567899999999999999999999999876        788888999999999999998 5566666665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.81  E-value=0.00022  Score=77.61  Aligned_cols=340  Identities=11%  Similarity=-0.023  Sum_probs=210.9

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (729)
                      +.....+..-+..+...|...+|+.+.-.|-+-          ......+-..+.-+...++..--..+    ++..+.-
T Consensus       344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~----------~~aa~lle~~~~~L~~~~~lsll~~~----~~~lP~~  409 (894)
T COG2909         344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDP----------EMAADLLEQLEWQLFNGSELSLLLAW----LKALPAE  409 (894)
T ss_pred             CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCH----------HHHHHHHHhhhhhhhcccchHHHHHH----HHhCCHH
Confidence            444555666677777788888888766554322          22333344445555555554332222    2111000


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                      .   -...+......+.......++.+|..+..++....+..... .....+...-..|.+....|+++.|+++.+.++.
T Consensus       410 ~---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         410 L---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             H---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            0   01123344556677778899999999999888776553221 2223455556678888999999999999999986


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH--HHHHH
Q 004811          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES--KSYCE  498 (729)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~  498 (729)
                      ....... .....++..+|.+..-.|++++|..+...+.++.+....  ......+....+.++..+|+...|  ...|.
T Consensus       487 ~L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~  563 (894)
T COG2909         487 QLPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAEQEKAFN  563 (894)
T ss_pred             hcccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6544332 334557788999999999999999999999999877642  344455666778889999943333  33333


Q ss_pred             HHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004811          499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY  578 (729)
Q Consensus       499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  578 (729)
                      ..-......  ...+.....++..+...+   -+++.+..-....+.+.............+++.|+.+++..|++++|.
T Consensus       564 ~~~~q~l~q--~~~~~f~~~~r~~ll~~~---~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~  638 (894)
T COG2909         564 LIREQHLEQ--KPRHEFLVRIRAQLLRAW---LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL  638 (894)
T ss_pred             HHHHHHhhh--cccchhHHHHHHHHHHHH---HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence            222221110  011112223333333333   337777777777777665443333333334468999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      ..+.+...+..... .+....+.++.........+|+..+|.....+..
T Consensus       639 ~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         639 AQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             HHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            99999888776544 3334444455555556667899999988887743

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.80  E-value=1e-05  Score=81.02  Aligned_cols=409  Identities=14%  Similarity=0.113  Sum_probs=247.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---  341 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  341 (729)
                      ...+++.|.+|+...++..|++.....+........    .....+.+..-..+....+.++|+.++.-.-++....   
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~----~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~  175 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLES----SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK  175 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            456788899999999999999888776654321111    1112223444555666667777776654333322110   


Q ss_pred             -hCC----------CCchH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004811          342 -LGE----------TDPRV-----------GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG  399 (729)
Q Consensus       342 -~~~----------~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg  399 (729)
                       .|.          ..|..           ..+.......|.+..+...+..-.+.++.+..+.        +..+...+
T Consensus       176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LKs  247 (696)
T KOG2471|consen  176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLKS  247 (696)
T ss_pred             ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHHH
Confidence             110          01111           1122223334455555555555555555444322        34577889


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCC--CChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCC------
Q 004811          400 LICETKGDHEAALEHLVLASMTMIAND--QDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGE------  468 (729)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~------  468 (729)
                      ..++..|++.+|.+.+...- +....+  ..|.  ....++++|.+++++|.|.-+..+|.+|++ .+.+....      
T Consensus       248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            99999999999998875431 111111  1122  344568999999999999999999999996 44433211      


Q ss_pred             ---CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch-------------
Q 004811          469 ---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE-------------  532 (729)
Q Consensus       469 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  532 (729)
                         .......++++.|..|...|++-.|.++|.++...+...         ...|..+|.++....+             
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---------PrlWLRlAEcCima~~~~l~ee~~~s~s~  397 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---------PRLWLRLAECCIMALQKGLLEEGNSSLSR  397 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence               012345688999999999999999999999999998762         4567777777653211             


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHHHhC--------------------------
Q 004811          533 ------------------------------------LEQAIKLLQKALKIYNDA--------------------------  550 (729)
Q Consensus       533 ------------------------------------~~~A~~~~~~al~~~~~~--------------------------  550 (729)
                                                          .+=|.-+++.++-+.+..                          
T Consensus       398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~  477 (696)
T KOG2471|consen  398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN  477 (696)
T ss_pred             ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence                                                122444455554443110                          


Q ss_pred             --------CCCC--------C--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004811          551 --------PGQQ--------S--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (729)
Q Consensus       551 --------~~~~--------~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (729)
                              .|+.        +        ....++.+.+.+-...|+.-.|+..-.+.++..+         ...++..|
T Consensus       478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------lS~~~kfL  548 (696)
T KOG2471|consen  478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------LSKIYKFL  548 (696)
T ss_pred             CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---------hhhHHHHH
Confidence                    0000        0        1244566778888899999999999988887632         23344444


Q ss_pred             -----HHHHHHcCCHHHHHHHHHHHHH------------HHHHhc------CC---C-------ChhH--HHHHHHHHHH
Q 004811          607 -----GLACVQRYSINEAVELFEEARS------------ILEQEC------GP---Y-------HPDT--LGVYSNLAGT  651 (729)
Q Consensus       607 -----a~~~~~~g~~~~A~~~~~~al~------------~~~~~~------~~---~-------~~~~--~~~~~~la~~  651 (729)
                           |.++..+.+..+|..++.--+-            -+....      .+   .       .++.  ...+++||.+
T Consensus       549 GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a  628 (696)
T KOG2471|consen  549 GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAA  628 (696)
T ss_pred             HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHH
Confidence                 4555567777787776654210            011100      00   0       1121  2367899999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811          652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (729)
                      |..+|++++|..++..+..+..+.      ....+......+-...|+...|. ..+++.
T Consensus       629 ~alq~~~dqAk~ll~~aatl~hs~------v~~~A~~lavyidL~~G~~q~al-~~lk~~  681 (696)
T KOG2471|consen  629 LALQGHHDQAKSLLTHAATLLHSL------VNVQATVLAVYIDLMLGRSQDAL-ARLKQC  681 (696)
T ss_pred             HHHhcccHHHHHHHHHHHHhhhcc------ccHHHHHHHHHHHHhcCCCcchH-HHHHhc
Confidence            999999999999999999875311      12233333334456789999998 766653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=7e-06  Score=74.93  Aligned_cols=222  Identities=15%  Similarity=0.159  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      .+..|..-+.+|....+|++|...+.+|.+-++...  .....+.++-..+.+...+..+.++..+|++|..++.+..  
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G--  105 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG--  105 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--
Confidence            344455557788888999999999999998766543  1344567788888889999999999999999999998863  


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (729)
                        .++.+..-...+--....-++++|+.+|++++.+.... +........+...+.++.+...|.+|-..+.+-..+...
T Consensus       106 --spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~  182 (308)
T KOG1585|consen  106 --SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK  182 (308)
T ss_pred             --CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence              22333333333444456678999999999999998876 444555667788899999999999999998887776665


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      ......  ....+.....+|+...+|..|..+|+...++    .+-..++...++.+|-..|. .|+.++....+.
T Consensus       183 ~~~y~~--~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  183 CDAYNS--QCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             Hhhccc--HHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence            544332  2344555566777778999999999987665    22235666777788777664 577776665544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.80  E-value=5.4e-08  Score=100.24  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      +...|..++..|+|++|+.+|++++.+        +|....++..+|.+|..+|++++|+..+++++.+        +|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            455688889999999999999999999        8889999999999999999999999999999987        688


Q ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...+++++|.+|..+|++++|+ ..|++++.++|+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~l~P~  102 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAK-AALEKGASLAPG  102 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence            8899999999999999999999 999999999997

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.79  E-value=1e-06  Score=98.41  Aligned_cols=219  Identities=12%  Similarity=0.064  Sum_probs=152.2

Q ss_pred             cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (729)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (729)
                      +++..+...+|+.+..|+.....++..++ .++|++.+++||..+.-.. .....+.+.+|.+|-..|   |.-+...+.
T Consensus      1445 eDferlvrssPNSSi~WI~YMaf~LelsE-iekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~y---G~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSE-IEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAY---GTEESLKKV 1519 (1710)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhhhh-hHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhh---CcHHHHHHH
Confidence            68888899999999999999999999998 9999999999998762111 112245666677666666   667778889


Q ss_pred             HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004811          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS  367 (729)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  367 (729)
                      |++|.+.+          ....+|..|..+|...+.+++|.++|+..++.+.        .....|..+|..++.+.+-+
T Consensus      1520 FeRAcqyc----------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1520 FERACQYC----------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred             HHHHHHhc----------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHH
Confidence            99988875          1234688899999999999999999999888852        45678889999999998889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004811          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR  447 (729)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  447 (729)
                      .|..++.+||...|....      .......|.+-+..|+.+.+...|+..+.      ..|.....|.-+...-...|+
T Consensus      1582 aa~~lL~rAL~~lPk~eH------v~~IskfAqLEFk~GDaeRGRtlfEgll~------ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEH------VEFISKFAQLEFKYGDAERGRTLFEGLLS------AYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             HHHHHHHHHHhhcchhhh------HHHHHHHHHHHhhcCCchhhHHHHHHHHh------hCccchhHHHHHHHHHHccCC
Confidence            999999999888776321      22334445555555555555555544332      123333344444444444555


Q ss_pred             HHHHHHHHHHHHHH
Q 004811          448 YDEAGFAYQKALTA  461 (729)
Q Consensus       448 ~~~A~~~~~~al~~  461 (729)
                      .+.+...|++++.+
T Consensus      1650 ~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHHHHHHHHHhc
Confidence            55555555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.79  E-value=8.5e-07  Score=78.91  Aligned_cols=124  Identities=20%  Similarity=0.236  Sum_probs=98.4

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (729)
                      ...++...+...++..+.-     .++.+....+.+.+|.+++..|++++|...|+.++..      ..++.....+...
T Consensus        22 ~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------~~d~~l~~~a~l~   90 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------APDPELKPLARLR   90 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCHHHHHHHHHH
Confidence            3578888887777776665     2234455788899999999999999999999999987      3334555678889


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (729)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (729)
                      |+.++...|++++|+..++..        ........++..+|.+|...|++++|+..|++|+
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999998651        1222345567789999999999999999999874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.78  E-value=1.1e-07  Score=98.10  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (729)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (729)
                      +...|..++..|+|++|+.+|.+++.+.        +....++..+|.+|..+|++++|+..+++++.+        +|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            3466888999999999999999999862        224578999999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (729)
                      ...+++.+|.+|..+|++++|+..|++++.+        +|....+...++.+....
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987        566677777777775554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.77  E-value=3.6e-07  Score=84.06  Aligned_cols=108  Identities=17%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (729)
Q Consensus       258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (729)
                      ..+.+..+.+++.+|..+...|++++|+.+|++++.+..     +.+ ....++..+|.++...|++++|+.+|++++..
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPN-DRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445567788899999999999999999999999998742     111 12346899999999999999999999999998


Q ss_pred             HHHHhCCCCchHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHH
Q 004811          338 QKQVLGETDPRVGETCRYLAEAHVQALQ-------FSEAQKFCQMALDI  379 (729)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~  379 (729)
                              .|.....+..+|.++...|+       ++.|+..+.++++.
T Consensus       102 --------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~  142 (172)
T PRK02603        102 --------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY  142 (172)
T ss_pred             --------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence                    67778888899999988776       44444444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.77  E-value=5.5e-07  Score=80.09  Aligned_cols=135  Identities=22%  Similarity=0.245  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      +...+..+...+..++ +..+...+++.+.-+      ...+....+...+|.+++..|++++|+..|+.++...     
T Consensus        11 a~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----   78 (145)
T PF09976_consen   11 ASALYEQALQALQAGD-PAKAEAAAEQLAKDY------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----   78 (145)
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHC------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----
Confidence            3445566666667776 777777666666542      2224557788889999999999999999999999753     


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (729)
                      ++. .....+.+.||.++...|++++|+..++...         ..+....++..+|.+|...|++++|+..|++++
T Consensus        79 ~d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   79 PDP-ELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            222 2334568899999999999999999986621         135567788899999999999999999999874

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.4e-07  Score=93.12  Aligned_cols=140  Identities=12%  Similarity=0.174  Sum_probs=118.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (729)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (729)
                      ...|..|++.|+|..|...|++|+..+......+.       .....++.+++.++.++++|.+|+....++|.+     
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----  286 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----  286 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence            45688999999999999999999988763322211       123457899999999999999999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                         +|.+..+++..|.++..+|+++.|+..|++++++        .|.+..+...|..+-.+..++.+...+.|..++..
T Consensus       287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence               8999999999999999999999999999999988        68888889999988888877777754888888876


Q ss_pred             ccc
Q 004811          715 NSR  717 (729)
Q Consensus       715 ~p~  717 (729)
                      .+.
T Consensus       356 ~~~  358 (397)
T KOG0543|consen  356 LAE  358 (397)
T ss_pred             ccc
Confidence            553

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=1e-05  Score=73.45  Aligned_cols=197  Identities=12%  Similarity=0.147  Sum_probs=136.9

Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (729)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (729)
                      .+.+++|.++|.++-.++                      ....++..|-..|.++.......+...+.+..|...+.+|
T Consensus        27 ~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy   84 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY   84 (288)
T ss_pred             CcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence            457888888887775544                      2334455555666666666566666667777777777776


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      .. ++..+|+.+++++++++...+.  ...-+..+..+|.+|..- .++++|+.+|+++-+.+..-   ......-.++.
T Consensus        85 kk-~~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~l  158 (288)
T KOG1586|consen   85 KK-VDPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLL  158 (288)
T ss_pred             hc-cChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHH
Confidence            55 5999999999999999887752  334456677899999875 99999999999999998652   22333445677


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                      ..+..-...++|.+|+..|++.....-+..-.....-..+..-|.+++-..+.-.+...+++-.++
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            788888889999999999998877654442222223334456677777767766665555554444

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.75  E-value=1.6e-06  Score=97.53  Aligned_cols=400  Identities=14%  Similarity=0.103  Sum_probs=268.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 004811          313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA  392 (729)
Q Consensus       313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a  392 (729)
                      .++..+...+++.+|...-++++++.+..++...|+...-+..++..++....+.+|+.+-.+++.+.........+..+
T Consensus       670 s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~  749 (1236)
T KOG1839|consen  670 SLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTA  749 (1236)
T ss_pred             cCceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCcccc
Confidence            34777788899999999999999999999999999999999999988888888899999999988887666554444333


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CC-ChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHH--h
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQ-DAEVASVDCSIGDTYLS---LSRYDEAGFAYQKALTAFKT--N  465 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~--~  465 (729)
                      ..+.+....-...|  +-++.++..+++.+... +. +...+.. ..+..++..   ......+..-.-++.++..+  .
T Consensus       750 a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~  826 (1236)
T KOG1839|consen  750 ATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAA  826 (1236)
T ss_pred             chhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhc
Confidence            33333322222222  55666666665443332 11 1111111 222222221   11111111111111110000  0


Q ss_pred             cCCCChh---------------------------HHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHhcCC-------
Q 004811          466 KGENHPA---------------------------VASVFVRLADMYNRTGKLRESKS---YCENALRIYEKPV-------  508 (729)
Q Consensus       466 ~~~~~~~---------------------------~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~~~~-------  508 (729)
                      .+...+.                           ...-...+..+....|...-+..   .+..-+....+..       
T Consensus       827 ~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~  906 (1236)
T KOG1839|consen  827 AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEP  906 (1236)
T ss_pred             cCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCC
Confidence            0000010                           00000111122222222111111   1111111100000       


Q ss_pred             -CC--------------CChH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH
Q 004811          509 -PG--------------VPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM  570 (729)
Q Consensus       509 -~~--------------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~  570 (729)
                       ..              ...|  ..+.-....+......|.+.+|.+ .-+++.+..+..+.. +..+..|..++.++..
T Consensus       907 ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~  985 (1236)
T KOG1839|consen  907 KSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNR  985 (1236)
T ss_pred             CCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh
Confidence             00              0011  122334455666677888888888 888888877665554 4778889999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004811          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (729)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  650 (729)
                      .|++++|+.+-.++.-+..+....+++.....+.+++...+..++...|+..+.+++.+..-..++++|..+.+..+++.
T Consensus       986 ~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~ 1065 (1236)
T KOG1839|consen  986 LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLEL 1065 (1236)
T ss_pred             hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHH
Confidence            99999999999999999888888888888899999999999999999999999999999888888899999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       651 ~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++...++++.|+.+++.|+.+...++|+.+-.+...+..++++....+++..|. ...+....+.+.
T Consensus      1066 l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al-~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1066 LLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL-EHEKVTYGIYKE 1131 (1236)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH-HHHhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998 888777766554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.73  E-value=5.5e-08  Score=74.01  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHhhcc
Q 004811          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG-RVRSRKAQSLETLLDANS  716 (729)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g-~~~~A~~~~l~~al~~~p  716 (729)
                      +.++..+|.++...|++++|+.+|++++++        +|....+++++|.++..+| ++++|+ ..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI-EDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH-HHHHHHHHcCc
Confidence            568899999999999999999999999998        7999999999999999999 799999 99999999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.73  E-value=3.1e-07  Score=78.82  Aligned_cols=104  Identities=18%  Similarity=0.213  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      .+++.+|..+...|++++|+..|.+++....     .......++..+|.++...|++++|+.+|++++..     .+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            4678899999999999999999999987521     12223567889999999999999999999999987     2224


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      +....++..+|.++..+|++++|+.++++++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            4456789999999999999999999999999873

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.71  E-value=1.4e-07  Score=77.09  Aligned_cols=99  Identities=25%  Similarity=0.396  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      ++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|++++.+        .|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence            4678899999999999999999999988        6666678999999999999999999999999876        35


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ....++..++.++...|++++|. ..+..++..+|+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~  100 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDPN  100 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCCC
Confidence            55578999999999999999999 999999998874

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=1.3e-06  Score=88.11  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=128.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      +....+++..+..++..|++++|+..++..+..        .|++...+...+.++...++..+|.+.+++++.+     
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----  369 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----  369 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence            345567888999999999999999999997776        7889999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                          .|.......++|..|.+.|++.+|+..++..+.-.+..       ...|..|+..|..+|+..+|...        
T Consensus       370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A--------  430 (484)
T COG4783         370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLA--------  430 (484)
T ss_pred             ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHH--------
Confidence                33446678899999999999999999998887766655       46788999999999987765433        


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                                       .++.|...|++++|+..+..+.+.
T Consensus       431 -----------------~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         431 -----------------RAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             -----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence                             355666789999999999988776

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.9e-07  Score=90.02  Aligned_cols=146  Identities=16%  Similarity=0.187  Sum_probs=116.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC------HhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS------LELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (729)
                      ..+...-..|+.+++.|+ |..|+..|++|+..+......++.      .....++.+++.||.++++|.+|+....++|
T Consensus       206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345567788999999997 999999999999998754332222      2235678999999999999999999999999


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH-HH
Q 004811          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA-QK  371 (729)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~  371 (729)
                      .+.     +.+    ..++++.|.++..+|+|+.|+..|++++++        .|.+..+...|..+..+..++.+. .+
T Consensus       285 e~~-----~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk  347 (397)
T KOG0543|consen  285 ELD-----PNN----VKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKK  347 (397)
T ss_pred             hcC-----CCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            986     333    446999999999999999999999999999        688888888888777666655444 67


Q ss_pred             HHHHHHHHHHh
Q 004811          372 FCQMALDIHKD  382 (729)
Q Consensus       372 ~~~~al~~~~~  382 (729)
                      +|..++.....
T Consensus       348 ~y~~mF~k~~~  358 (397)
T KOG0543|consen  348 MYANMFAKLAE  358 (397)
T ss_pred             HHHHHhhcccc
Confidence            77777765543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.68  E-value=4.2e-06  Score=93.82  Aligned_cols=222  Identities=11%  Similarity=0.142  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc
Q 004811          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (729)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (729)
                      ..+-|++.+.-        +|..+..|...-..+...++.++|.+.+++||....-    ....+...+|..+-++...-
T Consensus      1443 saeDferlvrs--------sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~----REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--------SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF----REEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred             CHHHHHHHHhc--------CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc----chhHHHHHHHHHHHhHHHhh
Confidence            34445555544        7999999999999999999999999999999987411    11233344555555555555


Q ss_pred             chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (729)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (729)
                      |.-+.-.+.|++|.+++...        .++..|..+|...+.+++|.++|+..++.+.+        ...+|..+|..+
T Consensus      1511 G~eesl~kVFeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFL 1574 (1710)
T ss_pred             CcHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHH
Confidence            66677788899988887544        67888999999999999999999999887642        346899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      +.+.+-++|..++.+|+..+.+      ..........|++-++.|+.+.+..+|+-.+.-        +|...+.|.-+
T Consensus      1575 l~~ne~~aa~~lL~rAL~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVY 1640 (1710)
T ss_pred             hcccHHHHHHHHHHHHHhhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHH
Confidence            9999999999999999998332      235667788899999999999999999998854        68888889888


Q ss_pred             HHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          691 AELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       691 a~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                      ...-...|+.+... ..|++++.+.
T Consensus      1641 id~eik~~~~~~vR-~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVR-DLFERVIELK 1664 (1710)
T ss_pred             HHHHHccCCHHHHH-HHHHHHHhcC
Confidence            88889999999998 9999988764

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=7.5e-06  Score=74.24  Aligned_cols=196  Identities=15%  Similarity=0.121  Sum_probs=138.7

Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (729)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (729)
                      .+++++|.++|.++-.+                       |....+|..|=..|.++-+..... +..+..+..|...+.
T Consensus        27 ~~k~eeAadl~~~Aan~-----------------------yklaK~w~~AG~aflkaA~~h~k~-~skhDaat~YveA~~   82 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANM-----------------------YKLAKNWSAAGDAFLKAADLHLKA-GSKHDAATTYVEAAN   82 (288)
T ss_pred             CcchHHHHHHHHHHHHH-----------------------HHHHHhHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHH
Confidence            44677777666665544                       444455666666666666666655 555666777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (729)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (729)
                      +|.+ ++..+|+.+++++++++...+.-.  .-+..+..+|.+|..- .++++|+.+|+++-+.+.....  ....-.++
T Consensus        83 cykk-~~~~eAv~cL~~aieIyt~~Grf~--~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--~ssANKC~  157 (288)
T KOG1586|consen   83 CYKK-VDPEEAVNCLEKAIEIYTDMGRFT--MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--VSSANKCL  157 (288)
T ss_pred             Hhhc-cChHHHHHHHHHHHHHHHhhhHHH--HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--hhhHHHHH
Confidence            7655 499999999999999998876542  2345677889998865 8999999999999998765322  22233466


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV----DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~----~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...|..-...++|.+|+..|++.....     -+++..    -.-++.-|.++....+.-.+. ..+++..+++|.
T Consensus       158 lKvA~yaa~leqY~~Ai~iyeqva~~s-----~~n~LLKys~KdyflkAgLChl~~~D~v~a~-~ALeky~~~dP~  227 (288)
T KOG1586|consen  158 LKVAQYAAQLEQYSKAIDIYEQVARSS-----LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ-RALEKYQELDPA  227 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHhHHHHHHHHHHHHhHhcccHHHHH-HHHHHHHhcCCc
Confidence            777888888999999999999887542     112221    223455667777778888888 999999999997

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.66  E-value=3.9e-07  Score=88.65  Aligned_cols=106  Identities=14%  Similarity=0.136  Sum_probs=91.5

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          601 VALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       601 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      ..++..|..+ ...|+|++|+..|+..++.+     |+++....+++.+|.+|...|++++|+..|++++..+     |+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3445555554 56799999999999999981     2233346799999999999999999999999999876     77


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|...++++.+|.++...|++++|+ ..|+++++..|+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~  249 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPG  249 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence            8899999999999999999999999 999999999997

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=1.4e-06  Score=87.90  Aligned_cols=152  Identities=18%  Similarity=0.103  Sum_probs=107.2

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh
Q 004811          218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI  297 (729)
Q Consensus       218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  297 (729)
                      |....+++..|...+..|+ +++|+..+...++..         |+.+..+...+.+++..++..+|.+.+++++.+.  
T Consensus       303 ~~~~aa~YG~A~~~~~~~~-~d~A~~~l~~L~~~~---------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--  370 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQ-YDEALKLLQPLIAAQ---------PDNPYYLELAGDILLEANKAKEAIERLKKALALD--  370 (484)
T ss_pred             ccchHHHHHHHHHHHHhcc-cchHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--
Confidence            5666777778888888876 777777777644432         4446667777888888888888888888888775  


Q ss_pred             hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004811          298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (729)
Q Consensus       298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (729)
                         +..+    ...+.+|.+|...|++.+|+..+...+..        +|+.+..|..||..|..+|+-.+|...     
T Consensus       371 ---P~~~----~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A-----  430 (484)
T COG4783         371 ---PNSP----LLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLA-----  430 (484)
T ss_pred             ---CCcc----HHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHH-----
Confidence               3332    23677888888888888888777776665        677777888888888887776655543     


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004811          378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (729)
Q Consensus       378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  421 (729)
                                          .+..|...|++++|+..+..+.+.
T Consensus       431 --------------------~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         431 --------------------RAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             --------------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence                                344455567778888777776543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.64  E-value=1.9e-07  Score=70.98  Aligned_cols=64  Identities=30%  Similarity=0.443  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG-RLDDAIEILEFVVGI  671 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  671 (729)
                      +.+|..+|.++...|++++|+.+|++++++        +|+...+++++|.+|..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            568899999999999999999999999999        9999999999999999999 799999999999986

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.63  E-value=0.00024  Score=69.64  Aligned_cols=302  Identities=15%  Similarity=0.080  Sum_probs=205.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHH
Q 004811          227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA  306 (729)
Q Consensus       227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  306 (729)
                      .|.+....|+ -..|...-.++-+++..     +.+  +.++..-+..-...|+|+.|.+-|+.++...         ..
T Consensus        90 tGliAagAGd-a~lARkmt~~~~~llss-----Dqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---------Et  152 (531)
T COG3898          90 TGLIAAGAGD-ASLARKMTARASKLLSS-----DQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDDP---------ET  152 (531)
T ss_pred             hhhhhhccCc-hHHHHHHHHHHHhhhhc-----cch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---------HH
Confidence            3444445565 67777777776655421     112  2334445777788999999999999988652         22


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (729)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (729)
                      ....+..|-.--...|..+.|+.+-+.+...        -|....++...-...+..|+|+.|+++.+......--..+.
T Consensus       153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~  224 (531)
T COG3898         153 RLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV  224 (531)
T ss_pred             HHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence            2223334444446789999999999999888        47777888888888899999999999998776644322221


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (729)
Q Consensus       387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (729)
                      .....+..+...+.. ...-+...|...-.++.+      ..++.+..-..-+..++..|+..++-.+++.+-+.     
T Consensus       225 aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~K------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-----  292 (531)
T COG3898         225 AERSRAVLLTAKAMS-LLDADPASARDDALEANK------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-----  292 (531)
T ss_pred             HHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhh------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-----
Confidence            111122222222222 222356677776666654      34555566667789999999999999999888775     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 004811          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (729)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (729)
                       +.||..       +.+|....--+.++.-++++-.+..-      .++.......++...+..|++..|..--+.+...
T Consensus       293 -ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~  358 (531)
T COG3898         293 -EPHPDI-------ALLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE  358 (531)
T ss_pred             -CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence             225544       44454444445566677776665322      4456778888999999999999999988888887


Q ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004811          547 YNDAPGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISK  587 (729)
Q Consensus       547 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  587 (729)
                      .+..        .++..|+.+-... |+-.+...++-+++..
T Consensus       359 ~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         359 APRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             Cchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            7654        5677788887665 9999999999988874

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=1.7e-05  Score=73.68  Aligned_cols=158  Identities=18%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                      .-|.+|...|++++|++.......+            .+...-..++.++.+++-|...++++.++-.          -.
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~~l------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~  170 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGENL------------EAAALNVQILLKMHRFDLAEKELKKMQQIDE----------DA  170 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HH
Confidence            3445555556666665555442221            1111223444555555555555555544321          12


Q ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          602 ALNQMGLACVQR----YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       602 ~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                      ++..||..+...    +++.+|.-+|++.-+.        .+.....+..+|.|...+|+|++|...++.++.-      
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------  236 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK------  236 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------
Confidence            333344433321    2344555555444332        2333345555666666666666666666666532      


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       678 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                        ++..++++.++..+-...|...++..+.+.++...+|+
T Consensus       237 --d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~  274 (299)
T KOG3081|consen  237 --DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE  274 (299)
T ss_pred             --cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence              34445555555555555666555554455555555554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.60  E-value=2.6e-07  Score=73.38  Aligned_cols=81  Identities=25%  Similarity=0.377  Sum_probs=68.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811          613 RYSINEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       613 ~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      .|+++.|+.+|+++++.        .|.  ....++.+|.+|..+|++++|+.++++ ...        ++......+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~   64 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLL   64 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHH
Confidence            68999999999999998        442  555788899999999999999999998 443        46667888889


Q ss_pred             HHHHHHhCCHhHHHHHHHHHH
Q 004811          691 AELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       691 a~~~~~~g~~~~A~~~~l~~a  711 (729)
                      |.++..+|++++|+ ..|+++
T Consensus        65 a~~~~~l~~y~eAi-~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAI-KALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHH-HHHHHH
T ss_pred             HHHHHHhCCHHHHH-HHHhcC
Confidence            99999999999999 988875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.59  E-value=3e-07  Score=72.99  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=69.0

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (729)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (729)
                      .+|+++.|+.+|+++++..+.     .. ....+..+|.+++..|++++|+.++++ ...        ++....+.+.+|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a   65 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA   65 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence            368999999999999987432     11 455777899999999999999999999 555        566677888899


Q ss_pred             HHHHHcCChHHHHHHHHHH
Q 004811          650 GTYDAIGRLDDAIEILEFV  668 (729)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~a  668 (729)
                      .++..+|++++|+..|+++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.58  E-value=0.00052  Score=67.40  Aligned_cols=299  Identities=15%  Similarity=0.025  Sum_probs=207.8

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004811          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (729)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (729)
                      |.+-.-.|+-..|.++-.++-.+......      ..++..-+..-...|+++.|..-|+-.+.      ++.....-+.
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqe------pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLR  158 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQE------PLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLR  158 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccch------HHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHH
Confidence            44455678888999888888766554433      35566778888889999999999987652      2222222223


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH-
Q 004811          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE-  515 (729)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-  515 (729)
                      .|-.--...|..+.|+.|.+++...        -|...+++...-...+..|+++.|+++.+.......-   +.+... 
T Consensus       159 gLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi---e~~~aeR  227 (531)
T COG3898         159 GLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI---EKDVAER  227 (531)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---chhhHHH
Confidence            3333345689999999999999887        6777788888888889999999999999876654211   111111 


Q ss_pred             -HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811          516 -IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       516 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (729)
                       .+..+...+.... .-+...|...-.+++++.++.       ...-..-+..++..|+..++-.+++.+.+.     +.
T Consensus       228 ~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl-------vPaav~AAralf~d~~~rKg~~ilE~aWK~-----eP  294 (531)
T COG3898         228 SRAVLLTAKAMSLL-DADPASARDDALEANKLAPDL-------VPAAVVAARALFRDGNLRKGSKILETAWKA-----EP  294 (531)
T ss_pred             HHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc-------chHHHHHHHHHHhccchhhhhhHHHHHHhc-----CC
Confidence             1222222222222 235777888888888876654       334455688999999999999999988774     22


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (729)
                      + +.       ++.+|....--+.++.-++++-.+..-     .|+..+.....+..-...|++..|..--+.+..+   
T Consensus       295 H-P~-------ia~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~---  358 (531)
T COG3898         295 H-PD-------IALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE---  358 (531)
T ss_pred             C-hH-------HHHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---
Confidence            2 22       344455444445566667766554222     6788888999999999999999999988888765   


Q ss_pred             HcCCCChhHHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHhh
Q 004811          675 KLGTANPDVDDEKRRLAELLKEA-GRVRSRKAQSLETLLDA  714 (729)
Q Consensus       675 ~~g~~~p~~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~  714 (729)
                           .|. ..++..|+.+-... |+..+.. .++-+++..
T Consensus       359 -----~pr-es~~lLlAdIeeAetGDqg~vR-~wlAqav~A  392 (531)
T COG3898         359 -----APR-ESAYLLLADIEEAETGDQGKVR-QWLAQAVKA  392 (531)
T ss_pred             -----Cch-hhHHHHHHHHHhhccCchHHHH-HHHHHHhcC
Confidence                 343 45677788887765 9999999 999999875

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=1.2e-05  Score=80.69  Aligned_cols=338  Identities=14%  Similarity=0.059  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHh
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE-VQKQVL  342 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~  342 (729)
                      ..++...+..++..|+|.+|.+.+...--.. ..-+...+ ......|.++|.+++.+|.|.-+..+|.+|++ .+.++.
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            4557778999999999999999886543221 11111111 11233478999999999999999999999996 443332


Q ss_pred             CCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC---HHH
Q 004811          343 GET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD---HEA  410 (729)
Q Consensus       343 ~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~  410 (729)
                      ..-         .....+++++.|..|...|+.-.|.++|.++...+..+.        ..|..++.++....+   .++
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCima~~~~l~ee  390 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIMALQKGLLEE  390 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhhhhhhhh
Confidence            110         123557889999999999999999999999999987764        568888888764321   111


Q ss_pred             HHHHHHH--------------HHHHHH----hCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHh------
Q 004811          411 ALEHLVL--------------ASMTMI----ANDQDAEVASVDCSIGDTYLSLSRYDEA-GFAYQKALTAFKTN------  465 (729)
Q Consensus       411 A~~~~~~--------------al~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~------  465 (729)
                      ......+              .+.+-.    ..+........-..+|.++.+.+-+--- ...+...+......      
T Consensus       391 ~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~  470 (696)
T KOG2471|consen  391 GNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSS  470 (696)
T ss_pred             ccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCC
Confidence            1111100              000000    0000000000011112222111100000 00000000000000      


Q ss_pred             ---------------cCC-------C--------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004811          466 ---------------KGE-------N--------HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE  515 (729)
Q Consensus       466 ---------------~~~-------~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (729)
                                     .|.       .        ......++.+.+.+-..+|+.-.|+..-++.++..+          
T Consensus       471 ~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~----------  540 (696)
T KOG2471|consen  471 SEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD----------  540 (696)
T ss_pred             CcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh----------
Confidence                           000       0        012345566777777888888888888888777632          


Q ss_pred             HHHHHHHHHHHH-----HhcchHHHHHHHHHHHH------H--HHHhCCC--------------CC---------CcHHH
Q 004811          516 IASGLTDVSSIY-----ESMNELEQAIKLLQKAL------K--IYNDAPG--------------QQ---------STVAG  559 (729)
Q Consensus       516 ~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~--~~~~~~~--------------~~---------~~~~~  559 (729)
                      ...++..||.+|     +.+.+..+|...+.--+      .  .....++              ..         .....
T Consensus       541 lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v  620 (696)
T KOG2471|consen  541 LSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGV  620 (696)
T ss_pred             hhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHH
Confidence            234454555444     44666677766554310      0  0000000              00         11234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      .+++||.++.-+|++++|..++..|..+.......      .+....-.+-+..|+...|+..+++..
T Consensus       621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~------~A~~lavyidL~~G~~q~al~~lk~~~  682 (696)
T KOG2471|consen  621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNV------QATVLAVYIDLMLGRSQDALARLKQCT  682 (696)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccH------HHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence            57899999999999999999999999886532221      222222234456788888888777653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.56  E-value=1.5e-06  Score=72.84  Aligned_cols=102  Identities=25%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (729)
                      .+++.+|.++-..|+.++|+.+|++++..     +...+....++..+|..+..+|++++|+.++++++.-+     |++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            36788999999999999999999999885     44456667799999999999999999999999998642     333


Q ss_pred             hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                      +........++.++...|+.++|+ ..+-.++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl-~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEAL-EWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence            336777788899999999999999 76655543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.52  E-value=4.1e-06  Score=70.30  Aligned_cols=99  Identities=22%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      .+.+.+|.++...|+.++|+.+|++++..     +........++..+|..+..+|++++|+..+++++..        .
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~   68 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------F   68 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence            35678999999999999999999999884     2223445678999999999999999999999999876        4


Q ss_pred             hh---HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          639 PD---TLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       639 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                      |+   ...+...++.++...|++++|+..+-.++.
T Consensus        69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44   666778899999999999999999988774

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=6.4e-05  Score=70.00  Aligned_cols=249  Identities=13%  Similarity=0.048  Sum_probs=159.4

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (729)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (729)
                      -++..|+|..++....+.-...   .      .......+.+.|..+|++...+.-...+        ..+. ..+...+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~---~------~~e~d~y~~raylAlg~~~~~~~eI~~~--------~~~~-lqAvr~~   78 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSK---T------DVELDVYMYRAYLALGQYQIVISEIKEG--------KATP-LQAVRLL   78 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhcccc---c------hhHHHHHHHHHHHHcccccccccccccc--------cCCh-HHHHHHH
Confidence            3455677777666544432211   1      1234667778888888876655443211        1122 2233444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (729)
                      +.+...-++.+.-+.-..+-+..      .........+..-|.+|..-|++++|++.......+              .
T Consensus        79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E  138 (299)
T KOG3081|consen   79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E  138 (299)
T ss_pred             HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence            55554455544444433333222      112233345555678899999999999988774333              2


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 004811          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      +...-..++.++.+++-|...++++.++..+.         ++..||..|...    +.+..|.-+|++.-+       +
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k  202 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K  202 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c
Confidence            33334567788899999999999988876543         445566655542    356666666665433       2


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                      .++ ....++.++.++..+|+|++|...++.++..        ++...+++.++..+-...|...++.+-+-.-+.
T Consensus       203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            222 3578889999999999999999999999998        777788999999999999998887765554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.51  E-value=1.3e-06  Score=82.30  Aligned_cols=104  Identities=21%  Similarity=0.178  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      +++.|.-++..|+|..|...|...++.     .|+.+....+++.||.+++.+|++++|...|..+++-+     +.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            677788888999999999999999987     44477788899999999999999999999999999866     78899


Q ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .+++++.||.+...+|+.++|. ..|+++++..|.
T Consensus       214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~  247 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPG  247 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCC
Confidence            9999999999999999999999 999999999997

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.51  E-value=0.0028  Score=69.13  Aligned_cols=230  Identities=16%  Similarity=0.064  Sum_probs=129.5

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHH
Q 004811          232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH  311 (729)
Q Consensus       232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  311 (729)
                      ...++ +.+|+....+.++-+         |....+...-|..+.++|++++|..+++..-...     .++    -..+
T Consensus        20 ld~~q-fkkal~~~~kllkk~---------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D----~~tL   80 (932)
T KOG2053|consen   20 LDSSQ-FKKALAKLGKLLKKH---------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTD----DLTL   80 (932)
T ss_pred             hhhHH-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCc----hHHH
Confidence            34444 666666666665532         3344445556889999999999997766543332     222    2246


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (729)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (729)
                      ..+-.+|..++++++|..+|++++..        .|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|+...      
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y------  145 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY------  145 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc------
Confidence            77889999999999999999999988        577 677778888888888877655544333333333321      


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          392 AADRRLMGLICETKGDHEAALE-----HLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~-----~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (729)
                       ..|..+..+.......+.+..     +-++..+.. ...+.....+.+.. .-.++..+|++++|...+..-+.-  ..
T Consensus       146 -yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~--~l  221 (932)
T KOG2053|consen  146 -YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGKYQEALEFLAITLAE--KL  221 (932)
T ss_pred             -hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHH--hc
Confidence             124444444444444443333     122222211 11222222233322 235667789999999988433221  11


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                          .+............+...++|.+-.+...+++..
T Consensus       222 ----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  222 ----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             ----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence                1222222233344445555555554444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.50  E-value=7.4e-07  Score=72.69  Aligned_cols=97  Identities=30%  Similarity=0.423  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      +++.+|.++...|++++|+..+++++..        .|....++..+|.++...+++++|+.+|++++.....       
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-------   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence            4678899999999999999999999987        4555688999999999999999999999999987322       


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                        ...++..+|.++...|++++|..++.+++...
T Consensus        67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence              23678899999999999999999999887654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.48  E-value=4.7e-06  Score=81.10  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=87.3

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          559 GIEAQMGVMY-YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       559 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      ...+..+..+ ...|+|++|+..|+..+..++.     ......+++.+|.+|+..|++++|+..|++++..     .|+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCC
Confidence            3445556654 6679999999999999987543     2334678999999999999999999999999987     344


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      ++....+++.+|.++..+|++++|+..|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            77788999999999999999999999999999874

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.46  E-value=5.3e-07  Score=67.55  Aligned_cols=59  Identities=25%  Similarity=0.320  Sum_probs=55.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      .+|..++..|++++|+..|+++++.        +|....+++.+|.++..+|++++|+.+|++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999998        8999999999999999999999999999999987

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.45  E-value=1.2e-06  Score=65.71  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=58.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +.+|..+...|++++|+..|+++++.        +|....+++.+|.++..+|++++|+ ..|+++++.+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence            35789999999999999999999954        7999999999999999999999999 999999999996

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=5.3e-05  Score=68.05  Aligned_cols=232  Identities=15%  Similarity=0.079  Sum_probs=145.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      +...+..++..|..|-..|-+.-|.--|.+++.+        .|..+.+++.+|..+...|+|+.|.+.|...+++    
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence            4455677888899999999999999999999999        8999999999999999999999999999999998    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AIS  586 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~  586 (729)
                           +|..-.+..+.|..++--|++.-|.+-+.+-.+-.+   .++...  .|..+   -...-+..+|..-+.+ +..
T Consensus       129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~---~DPfR~--LWLYl---~E~k~dP~~A~tnL~qR~~~  195 (297)
T COG4785         129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP---NDPFRS--LWLYL---NEQKLDPKQAKTNLKQRAEK  195 (297)
T ss_pred             -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC---CChHHH--HHHHH---HHhhCCHHHHHHHHHHHHHh
Confidence                 555567788889999999999999877765544333   333211  11111   1223466677655433 222


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      ..+       .  .+-|+..+   +-+|+..+ ..+++++....+... .-.....++++.||..|...|+.++|..+|+
T Consensus       196 ~d~-------e--~WG~~iV~---~yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK  261 (297)
T COG4785         196 SDK-------E--QWGWNIVE---FYLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEATALFK  261 (297)
T ss_pred             ccH-------h--hhhHHHHH---HHHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            110       1  11111111   11222211 122333332211100 0012234588999999999999999999999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (729)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (729)
                      -++...--    +.-+..-+.+.|+.+...+.+..+
T Consensus       262 LaiannVy----nfVE~RyA~~EL~~l~q~~~~l~~  293 (297)
T COG4785         262 LAVANNVY----NFVEHRYALLELSLLGQDQDDLAE  293 (297)
T ss_pred             HHHHHhHH----HHHHHHHHHHHHHHhccccchhhh
Confidence            88764210    012233455556665555544333

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=0.00025  Score=66.51  Aligned_cols=301  Identities=12%  Similarity=0.067  Sum_probs=184.7

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004811          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (729)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (729)
                      ..+|.-..+.+++++|+..|.+.+...-...+....+.-.+...++.+|...|++..-.+........+.... .+....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~K   85 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITK   85 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHH
Confidence            3466667788899999999999887632222222223345678899999999998776666554443333222 233333


Q ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          434 VDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       434 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      +...+-..+ .....++.-+..+...++.+.+...  .......-..++.++.+.|+|.+|+......+.-+++   -++
T Consensus        86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DD  160 (421)
T COG5159          86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK---YDD  160 (421)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcC
Confidence            333332222 3345677777887777776543210  1122334456788999999999999999998888777   345


Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      .+....++..-..+|....+..++...+..|.......+-++...+.+-..-|.+++...+|..|..+|-++++-+....
T Consensus       161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~  240 (421)
T COG5159         161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK  240 (421)
T ss_pred             ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence            56667778888899999999999988888887776655444444444444557778888899999999999988654433


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 004811          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFV  668 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a  668 (729)
                      .........-|..+..+.  .+..++-...++  .+++.+       +....+++...+..+..  +.+|..|+..|..-
T Consensus       241 ~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e  311 (421)
T COG5159         241 MDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE  311 (421)
T ss_pred             chHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence            221111111122233333  333333332222  222211       23445566666666643  34677777766654


Q ss_pred             H
Q 004811          669 V  669 (729)
Q Consensus       669 l  669 (729)
                      +
T Consensus       312 l  312 (421)
T COG5159         312 L  312 (421)
T ss_pred             h
Confidence            4

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.39  E-value=0.00025  Score=69.01  Aligned_cols=207  Identities=28%  Similarity=0.390  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      .......+..+...+.+..+...+...+..  .     ..+.....+..++..+...+++..++..+..++...+..   
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  128 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL--E-----LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---  128 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh--h-----hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence            455666666777777777777777666653  0     022335556666677777777777777776666543332   


Q ss_pred             CCcHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          554 QSTVAGIEAQMGV-MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       554 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                          .......+. ++...|+++.|...|.+++...    .. .......+...+..+...++++.|+..+.+++..   
T Consensus       129 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---  196 (291)
T COG0457         129 ----DLAEALLALGALYELGDYEEALELYEKALELD----PE-LNELAEALLALGALLEALGRYEEALELLEKALKL---  196 (291)
T ss_pred             ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence                111222233 6777777777777777774421    00 0113344444555566677777777777777776   


Q ss_pred             hcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811          633 ECGPYHPD-TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       633 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (729)
                           .+. ....+..++.++...++++.|+..+..++...        |.....+..++..+...|.++++. ..+..+
T Consensus       197 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  262 (291)
T COG0457         197 -----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEAL-EALEKA  262 (291)
T ss_pred             -----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHH-HHHHHH
Confidence                 444 45566777777777777777777777777652        334445555666666666677777 777777


Q ss_pred             Hhhcc
Q 004811          712 LDANS  716 (729)
Q Consensus       712 l~~~p  716 (729)
                      +..+|
T Consensus       263 ~~~~~  267 (291)
T COG0457         263 LELDP  267 (291)
T ss_pred             HHhCc
Confidence            76666

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=7.2e-06  Score=72.46  Aligned_cols=119  Identities=23%  Similarity=0.197  Sum_probs=98.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      .-+..+-.-|+.+|..|+ |.+|..-|..||.+++..    +......+|.+.|.++++++.++.|+..+.+++++.   
T Consensus        93 ~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---  164 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGD-YEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---  164 (271)
T ss_pred             HHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence            345667788999999998 999999999999997654    234567789999999999999999999999999996   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA  359 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  359 (729)
                            +....++.+.|.+|..+..|++|+..|.+.++.        +|....+...++.+
T Consensus       165 ------pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  165 ------PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL  211 (271)
T ss_pred             ------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence                  234456788999999999999999999999998        67766665555444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=3.9e-05  Score=68.86  Aligned_cols=203  Identities=15%  Similarity=0.065  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (729)
Q Consensus       390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (729)
                      ..+..++..|..|-..|-+.-|.--|.+++.+      .|..+.+++.+|..+...|+|+.|.+.|...+++        
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------  128 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------  128 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------
Confidence            34566777888888888888888888888754      6778889999999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHHH
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL-QKALKIYN  548 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~  548 (729)
                      +|..-.+..+.|..+..-|++.-|...+.+-.+.      ...+|... .|..+-   ...-+..+|...+ +++.....
T Consensus       129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~~~d~  198 (297)
T COG4785         129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAEKSDK  198 (297)
T ss_pred             CCcchHHHhccceeeeecCchHhhHHHHHHHHhc------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHHhccH
Confidence            8988899999999999999999998887776555      22233322 222221   2234566666544 33333322


Q ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (729)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (729)
                      ...|    ...+-+.+       |+..+ ...++++....+. ...-......+++.+|..+...|+.++|..+|+-++.
T Consensus       199 e~WG----~~iV~~yL-------gkiS~-e~l~~~~~a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         199 EQWG----WNIVEFYL-------GKISE-ETLMERLKADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             hhhh----HHHHHHHH-------hhccH-HHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            2211    11111222       22211 1223333222110 0001123457899999999999999999999999886


Q ss_pred             H
Q 004811          629 I  629 (729)
Q Consensus       629 ~  629 (729)
                      .
T Consensus       266 n  266 (297)
T COG4785         266 N  266 (297)
T ss_pred             H
Confidence            5

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=0.00036  Score=67.17  Aligned_cols=300  Identities=16%  Similarity=0.117  Sum_probs=191.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004811          354 RYLAEAHVQALQFSEAQKFCQMALDIHKD--NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (729)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (729)
                      ...+.......++++++..+.+.+.....  ..+......-.....+|.++...|+..+-..........+...+. +..
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-aka   86 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKA   86 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHH
Confidence            34444555566778888888888774211  111111112345678999999999998877776655443333222 222


Q ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          432 ASVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       432 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      +.+...+-..+. .-+..+.-+..+..+++...+...  .......-..+..+|...++|.+|+......+.-.++.   
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl---  161 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL---  161 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---
Confidence            333333333332 334555667777777776544320  12223345678899999999999999999998887773   


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (729)
                      ++......++..=..+|+...+..+|...+..|.......+-++...+.+-..-|.++....+|..|..||-+|.+-+..
T Consensus       162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s  241 (411)
T KOG1463|consen  162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS  241 (411)
T ss_pred             ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence            34555667777778899999999999998888877766554444444555555677888889999999999999987766


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 004811          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILE  666 (729)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~  666 (729)
                      .+...  ....++-.|-.+-...+..++--.++.  .+++.        ......++...|.++..  +.+|+.|+.-|.
T Consensus       242 ~~~~v--~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk  311 (411)
T KOG1463|consen  242 LDDDV--KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYK  311 (411)
T ss_pred             cCCcH--HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence            65542  233445555555556666666554443  33332        33445577778887754  346777777776


Q ss_pred             HHH
Q 004811          667 FVV  669 (729)
Q Consensus       667 ~al  669 (729)
                      .-+
T Consensus       312 ~eL  314 (411)
T KOG1463|consen  312 KEL  314 (411)
T ss_pred             HHH
Confidence            655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.36  E-value=0.0011  Score=64.44  Aligned_cols=229  Identities=26%  Similarity=0.300  Sum_probs=164.7

Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (729)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (729)
                      .+.+..+...+..++......      .........+..+...+++..+...+......    ...+.....+..++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  105 (291)
T COG0457          36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL  105 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence            345556666666655554332      11245777888888899999999888877643    23455667778888888


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      ...+++..++..+..++..        .+.........+. ++...|+++.|...+.+++.....      .......+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~  171 (291)
T COG0457         106 EALGKYEEALELLEKALAL--------DPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------LNELAEALL  171 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcC--------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ccchHHHHH
Confidence            8888888888888888775        2222233344444 889999999999999999663110      013345566


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                      .++..+...++++.|+..+.+++...+..      ....+..++..+...+++..|...+..++...+.        ...
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~  237 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAE  237 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHH
Confidence            66666888899999999999999887662      2456778899999999999999999999886432        234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .+..++..+...+.++++...+.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         238 ALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5666677777777899999999999887

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.36  E-value=0.0018  Score=69.40  Aligned_cols=190  Identities=18%  Similarity=0.120  Sum_probs=133.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH---HHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA---SGLTDVSSIYE----SMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      -.+.--.|+-+.++..+.++.+. ..    ...+...   -.|+.......    .....+.|.+.+......+|+.   
T Consensus       195 l~~vGF~gdR~~GL~~L~~~~~~-~~----i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s---  266 (468)
T PF10300_consen  195 LSFVGFSGDRELGLRLLWEASKS-EN----IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS---  266 (468)
T ss_pred             HhhcCcCCcHHHHHHHHHHHhcc-CC----cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc---
Confidence            33444569999999999988662 11    1121111   11111111111    2345677888888888887765   


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (729)
                          +..+...|.++...|+.++|+..|++++.......    .....++..++.++..+.+|++|..+|.+..+..   
T Consensus       267 ----~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s---  335 (468)
T PF10300_consen  267 ----ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES---  335 (468)
T ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc---
Confidence                45677889999999999999999999885433322    2345688999999999999999999999988761   


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 004811          634 CGPYHPDTLGVYSNLAGTYDAIGRL-------DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL  693 (729)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~  693 (729)
                          ....+...+..|.|+...|+.       ++|.++|.++-.+..+..|...|...-+.......
T Consensus       336 ----~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~  398 (468)
T PF10300_consen  336 ----KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKY  398 (468)
T ss_pred             ----ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHH
Confidence                223344566788899999999       99999999999988887777777655555444443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.35  E-value=2.2e-05  Score=64.23  Aligned_cols=102  Identities=23%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      ...+-..|..+...|+ .+.|++.|.+|+.+.         |..+.+|++.+..+.-+|+.++|+..+++++++.    +
T Consensus        43 S~~LEl~~valaE~g~-Ld~AlE~F~qal~l~---------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g  108 (175)
T KOG4555|consen   43 SRELELKAIALAEAGD-LDGALELFGQALCLA---------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----G  108 (175)
T ss_pred             HHHHHHHHHHHHhccc-hHHHHHHHHHHHHhc---------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----C
Confidence            3455667778888887 999999999999987         5568889999999999999999999999999986    2


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (729)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (729)
                      +. ......++...|.+|..+|+.+.|...|+.+-++
T Consensus       109 ~~-trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  109 DQ-TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             cc-chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            22 3445667999999999999999999999999877

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.34  E-value=1.6e-05  Score=65.06  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      .+-.-|..+...|+.+.|++.|.+++.+        .|..+.+|++.+..+..+|+.++|+..+++++++.     +...
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~t  111 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQT  111 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Cccc
Confidence            3455678888999999999999999999        68889999999999999999999999999999995     4445


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                      .....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            6678899999999999999999999999988763

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.33  E-value=0.0002  Score=67.15  Aligned_cols=186  Identities=17%  Similarity=0.149  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      .+..++.-|...+..|+|++|+..|+.+...     -+..|....+...++..+.+.+++++|+..+++-+.++..    
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~----  103 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT----  103 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC----
Confidence            3567788899999999999999999987754     1235566788999999999999999999999999999544    


Q ss_pred             CChHHHHHHHHHHHHHHHhc-----ch---HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESM-----NE---LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~-----g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (729)
                        ++....+++..|.++...     .+   ..+|+.-|+..++.+|+..   . .                 ..|.....
T Consensus       104 --~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~---Y-a-----------------~dA~~~i~  160 (254)
T COG4105         104 --HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR---Y-A-----------------PDAKARIV  160 (254)
T ss_pred             --CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc---c-h-----------------hhHHHHHH
Confidence              666677777778776643     22   3445555555555555441   0 0                 11111111


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (729)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (729)
                      .+...           .+.--..+|..|.+.|.+..|+..++.+++.+..     .+....++..+..+|..+|-.++|.
T Consensus       161 ~~~d~-----------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~  224 (254)
T COG4105         161 KLNDA-----------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAK  224 (254)
T ss_pred             HHHHH-----------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHH
Confidence            11111           2233445788999999999999999998887433     4566678888999999999998887


Q ss_pred             HH
Q 004811          663 EI  664 (729)
Q Consensus       663 ~~  664 (729)
                      ..
T Consensus       225 ~~  226 (254)
T COG4105         225 KT  226 (254)
T ss_pred             HH
Confidence            65

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=6.6e-06  Score=72.67  Aligned_cols=123  Identities=13%  Similarity=0.241  Sum_probs=102.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (729)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  641 (729)
                      -.-|.-++..|+|++|..-|..|+.+++....   .....+|.+.|.++.+++.++.|+....+++++        +|..
T Consensus        99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty  167 (271)
T KOG4234|consen   99 KKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTY  167 (271)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cchh
Confidence            44578889999999999999999999766543   335678899999999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004811          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR  703 (729)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A  703 (729)
                      ..++...|.+|..+..+++|++-|++.+++        +|....+...++++--......++
T Consensus       168 ~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernEk  221 (271)
T KOG4234|consen  168 EKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNEK  221 (271)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999976        577767766666665444443333

>PRK11906 transcriptional regulator; Provisional

Probab=98.29  E-value=4.3e-05  Score=77.85  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHH---HHHHHHhCCCCchHHHHHHHHHHHHHHh---------cCHHHHHHHHHH
Q 004811          311 HMQLGDTYAMLGQ---LENSLMCYTTGL---EVQKQVLGETDPRVGETCRYLAEAHVQA---------LQFSEAQKFCQM  375 (729)
Q Consensus       311 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~  375 (729)
                      ++..|......+.   .+.|+.+|.+|+   .+        +|..+.+|..+|.+++..         ....+|..+.++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            4666666655543   467888899999   55        899999999999998865         235677888888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY  455 (729)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (729)
                      |+++.+.+        +.++..+|.+....++++.|+..|++|+.+      .|..+.+++..|.+....|+.++|++.+
T Consensus       330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88877655        467999999999999999999999999764      7888999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 004811          456 QKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCENA  500 (729)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a  500 (729)
                      ++++++        +|....+-...-.+ .+-....+.|+.+|-+-
T Consensus       396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence            999998        66554433322222 33345677788777543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.5e-05  Score=76.24  Aligned_cols=102  Identities=17%  Similarity=0.104  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHH
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~  675 (729)
                      .+.-|..||.+|+.+|++..|...|.+|+++        .|+...++..+|.++..+.   ...++..+|++++..    
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----  222 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----  222 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----
Confidence            4678999999999999999999999999999        8888889999999887654   467999999999976    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                          +|.+..+++.||..++..|++.+|. ..++..++..|.
T Consensus       223 ----D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~  259 (287)
T COG4235         223 ----DPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPA  259 (287)
T ss_pred             ----CCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCC
Confidence                7899999999999999999999999 999999999886

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.29  E-value=1.7e-05  Score=85.31  Aligned_cols=121  Identities=15%  Similarity=0.127  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004811          573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI--------NEAVELFEEARSILEQECGPYHPDTLGV  644 (729)
Q Consensus       573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~~~~~~~~~~~~~  644 (729)
                      ++..|+.+|++|+++        .+.++.++..++.++.....+        ..+....++++.+      +.++....+
T Consensus       357 ~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~~~~  422 (517)
T PRK10153        357 SLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVLPRI  422 (517)
T ss_pred             HHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCChHH
Confidence            477899999999997        233566777777766554322        2333333333222      113444568


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +..+|..+...|++++|...+++|+.+        +|. ..++..+|.++...|+.++|+ ..|++|+.++|.
T Consensus       423 ~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~L~P~  485 (517)
T PRK10153        423 YEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAA-DAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence            888899999999999999999999987        464 679999999999999999999 999999999998

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.29  E-value=1.8e-05  Score=81.23  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=102.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (729)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  642 (729)
                      .|-.++...++++.|+.+|++..+.       .+    .+...++.++...++..+|+..+.+++..        .|...
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~-------~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~  234 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRER-------DP----EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS  234 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhc-------CC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence            3455566678899999888886653       11    34556899999999999999999999977        78888


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (729)
                      ..+...|..+...++++.|+...++++.+        .|.....|+.|+.+|...|+++.|+ ..++.
T Consensus       235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~AL-laLNs  293 (395)
T PF09295_consen  235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENAL-LALNS  293 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHH-HHHhc
Confidence            89999999999999999999999999987        6999999999999999999999999 66653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.27  E-value=2.3e-05  Score=66.80  Aligned_cols=107  Identities=19%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      ...++.-|...+..|+|.+|++.|+.....+     |..+....+...|+.+|...|++++|+..+++.+++.     |.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence            4677888999999999999999999887762     2245566789999999999999999999999999885     88


Q ss_pred             ChhHHHHHHHHHHHHHHhCC---------------HhHHHHHHHHHHHhhccc
Q 004811          680 NPDVDDEKRRLAELLKEAGR---------------VRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~---------------~~~A~~~~l~~al~~~p~  717 (729)
                      ||....+++..|.++..+..               ...|. ..|+.++...|+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~  131 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPN  131 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcC
Confidence            99999999999999999887               88999 999999999998

>PRK11906 transcriptional regulator; Provisional

Probab=98.26  E-value=1.7e-05  Score=80.76  Aligned_cols=135  Identities=10%  Similarity=0.021  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Q 004811          561 EAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARS  628 (729)
Q Consensus       561 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~  628 (729)
                      ++..|......+.   .+.|+.+|.+|+...    . -.+..+.+|..++.+++..         ....+|.++.++|++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----~-ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS----D-IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            3555665555553   456778888888321    1 1334677888888877654         245678888888998


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  708 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  708 (729)
                      +        ++..+.++..+|.++...|+++.|...|++|+.+        +|+.+.+++..|.+..-.|+.++|. +.+
T Consensus       333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~-~~i  395 (458)
T PRK11906        333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR-ICI  395 (458)
T ss_pred             c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence            8        8899999999999999999999999999999987        7999999999999999999999999 999


Q ss_pred             HHHHhhccc
Q 004811          709 ETLLDANSR  717 (729)
Q Consensus       709 ~~al~~~p~  717 (729)
                      +++++++|.
T Consensus       396 ~~alrLsP~  404 (458)
T PRK11906        396 DKSLQLEPR  404 (458)
T ss_pred             HHHhccCch
Confidence            999999997

>PRK15331 chaperone protein SicA; Provisional

Probab=98.25  E-value=1.8e-05  Score=69.03  Aligned_cols=99  Identities=15%  Similarity=0.066  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                      ..+...+..|.-++..|++++|...|+-..-.        ++...+.+..||.++..+++|++|+..|..+..+...+..
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            34566889999999999999999999987776        7788888999999999999999999999999998876655


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                      +        .+..|.++..+|+...|+..|..++.
T Consensus       107 p--------~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        107 P--------VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             c--------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            4        78899999999999999999988864

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.25  E-value=3.1e-07  Score=87.46  Aligned_cols=230  Identities=13%  Similarity=0.082  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (729)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (729)
                      +-..|.-|+.+|.|++|+.+|.+++..        .|.++..+.+.|..|+++..|..|...++.|+.+         +.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~  162 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DK  162 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hH
Confidence            355788999999999999999999998        7888999999999999999999999999999999         55


Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      ....+|...+..-..+|...+|.+-++.++++-+...           .|-..+.......++.-. .      +...+.
T Consensus       163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~-----------ELkK~~a~i~Sl~E~~I~-~------KsT~G~  224 (536)
T KOG4648|consen  163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI-----------ELKKSLARINSLRERKIA-T------KSTPGF  224 (536)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH-----------HHHHHHHHhcchHhhhHH-h------hcCCCC
Confidence            6788999999999999999999999999999877641           122222222222221100 0      011000


Q ss_pred             ----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          595 ----KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       595 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                          .........-.-|..+...|.++.++.++-.-+..        ..+......+ +..|...-+++.|+.-.-+++.
T Consensus       225 ~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~--------~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~  295 (536)
T KOG4648|consen  225 TPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRAT--------IDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN  295 (536)
T ss_pred             CccccchhhhccccCcchhhhhhhccccceeEeeccccc--------cCccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence                00000111223355666777777777777665543        1122112222 5667777778887766655543


Q ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .        .|........-+..-.-.|...++. ..++.++.+.|.
T Consensus       296 ~--------~~s~~~~~s~~~~A~T~~~~~~E~K-~~~~T~~~~~P~  333 (536)
T KOG4648|consen  296 P--------KPTPMPDTSGPPKAETIAKTSKEVK-PTKQTAVKVAPA  333 (536)
T ss_pred             C--------CCCcCcccCCCchhHHHHhhhhhcC-cchhheeeeccc
Confidence            2        1222222222233333445666777 777777777765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.23  E-value=3.2e-05  Score=83.22  Aligned_cols=131  Identities=14%  Similarity=0.034  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHH
Q 004811          310 GHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALD  378 (729)
Q Consensus       310 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~  378 (729)
                      -++..|..+...++   +..|+.+|++|+++        +|+++.++..++.+|.....+        ..+.....+++.
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            35666777766554   78999999999999        899999999988887665332        333334444333


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (729)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (729)
                      +.....   .   +.++..+|..+...|++++|...+++|+.+      .+. +.+|..+|.++...|++++|++.|++|
T Consensus       413 l~~~~~---~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        413 LPELNV---L---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             cccCcC---C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            311111   1   356888899999999999999999999865      233 578999999999999999999999999


Q ss_pred             HHH
Q 004811          459 LTA  461 (729)
Q Consensus       459 l~~  461 (729)
                      +.+
T Consensus       480 ~~L  482 (517)
T PRK10153        480 FNL  482 (517)
T ss_pred             Hhc
Confidence            998

>PRK15331 chaperone protein SicA; Provisional

Probab=98.23  E-value=1.2e-05  Score=70.13  Aligned_cols=99  Identities=9%  Similarity=-0.017  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      .....+..|.-++..|++++|..+|+-....        ++...+.+..||.++..+++|++|+..|..+..+       
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-------  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-------  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            4456677888899999999999999988877        7777888999999999999999999999999876       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                       .++.+...+..|.+|..+|+.+.|. ..|+.++..
T Consensus       101 -~~~dp~p~f~agqC~l~l~~~~~A~-~~f~~a~~~  134 (165)
T PRK15331        101 -LKNDYRPVFFTGQCQLLMRKAAKAR-QCFELVNER  134 (165)
T ss_pred             -ccCCCCccchHHHHHHHhCCHHHHH-HHHHHHHhC
Confidence             3445556899999999999999999 999999884

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.017  Score=63.83  Aligned_cols=149  Identities=21%  Similarity=0.204  Sum_probs=87.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh---------
Q 004811          397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA--FKTN---------  465 (729)
Q Consensus       397 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~---------  465 (729)
                      ..|.-++..+.|+.|.-.|...              .-|..|+..+..+|+|..|....++|-..  ++..         
T Consensus      1199 ~vGdrcf~~~~y~aAkl~y~~v--------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNV--------------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred             HHhHHHhhhhhhHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhh
Confidence            4455556666666665555422              34566778888888888888877776432  2211         


Q ss_pred             ------cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004811          466 ------KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (729)
Q Consensus       466 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (729)
                            .|-+-.-.+.-+-.+...|...|-|++-+.+++.++-+-+.         ..-.+..||.+|.+- ++++-.++
T Consensus      1265 FrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1265 FRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred             hhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHH
Confidence                  11111122334456777888899999999999888877332         244567788777653 33443333


Q ss_pred             HHH---------HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811          540 LQK---------ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (729)
Q Consensus       540 ~~~---------al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (729)
                      ++-         .++..        ..+..|..+..+|.+-..|+.|
T Consensus      1335 l~LFwsRvNipKviRA~--------eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAA--------EQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             HHHHHHhcchHHHHHHH--------HHHHHHHHHHHHHHhhhhhhHH
Confidence            321         11111        1235566677777776666665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.21  E-value=0.00028  Score=61.97  Aligned_cols=162  Identities=14%  Similarity=0.075  Sum_probs=122.0

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (729)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (729)
                      ...+.=+.+....-..+.+++.|..         .-.+.||......|++.+|..+|++++.     +........+..+
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLgl  130 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGL  130 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHH
Confidence            3344445666666666666666554         3377899999999999999999999873     3344445678889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (729)
                      +...+..+++..|...+++..+.-.      ....+.....+|..|...|++.+|...|+.++..+..          ..
T Consensus       131 A~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~  194 (251)
T COG4700         131 AQAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQ  194 (251)
T ss_pred             HHHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HH
Confidence            9999999999999999998887621      1233456677899999999999999999999998533          34


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      +....+..+..+|+.++|...+....+...+.
T Consensus       195 ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~  226 (251)
T COG4700         195 ARIYYAEMLAKQGRLREANAQYVAVVDTAKRS  226 (251)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence            45566888889999999888777666655443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.18  E-value=0.00091  Score=62.87  Aligned_cols=196  Identities=18%  Similarity=0.154  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      +..++.-|......|++++|+..|+.......      ..+..-.+...++..+++.+++++|+..+++-+.++|.++. 
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-  106 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-  106 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-
Confidence            56677888888889999999999988876522      24445678888999999999999999999998888876643 


Q ss_pred             CCcHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          554 QSTVAGIEAQMGVMYYML-----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (729)
                         ...+++..|.+++..     .|...+...+...-++..+....  .....+...              +..+...+ 
T Consensus       107 ---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~dA~~~--------------i~~~~d~L-  166 (254)
T COG4105         107 ---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAPDAKAR--------------IVKLNDAL-  166 (254)
T ss_pred             ---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchhhHHHH--------------HHHHHHHH-
Confidence               345566666665542     23333333333333332222111  111111111              11111111 


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  708 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  708 (729)
                                   +.-=..+|..|.+.|.+..|+..++.+++-+     ++.+....++..|..+|..+|-.++|.  ..
T Consensus       167 -------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~--~~  226 (254)
T COG4105         167 -------------AGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAK--KT  226 (254)
T ss_pred             -------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHH--HH
Confidence                         1122567899999999999999999999876     556778889999999999999999996  45


Q ss_pred             HHHHhhcc
Q 004811          709 ETLLDANS  716 (729)
Q Consensus       709 ~~al~~~p  716 (729)
                      .+.|..|+
T Consensus       227 ~~vl~~N~  234 (254)
T COG4105         227 AKVLGANY  234 (254)
T ss_pred             HHHHHhcC
Confidence            55666554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.16  E-value=5.8e-06  Score=62.53  Aligned_cols=66  Identities=32%  Similarity=0.415  Sum_probs=56.9

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      +..|++++|+.+|++++..        +|+...+++.+|.+|...|++++|...+++++..        +|+....+..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHH
Confidence            5689999999999999999        8999999999999999999999999999999865        56666666655


Q ss_pred             HH
Q 004811          691 AE  692 (729)
Q Consensus       691 a~  692 (729)
                      +.
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

...

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.15  E-value=0.00047  Score=64.21  Aligned_cols=242  Identities=14%  Similarity=0.125  Sum_probs=165.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004811          321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL  400 (729)
Q Consensus       321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~  400 (729)
                      ....++|+.-|++++++-    |+....-..++-.+..+++.+++|++-...|.+.+.........+...  .+.+.+-.
T Consensus        40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD  113 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD  113 (440)
T ss_pred             ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence            347899999999999983    222334456778888899999999999999999987655432221111  11222222


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHH
Q 004811          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP----AVASV  476 (729)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~  476 (729)
                      .-....+.+--.++|+..+..+....+.......-..+|.+|+..++|.+-...+.+.-.-++.-.|+++.    ....+
T Consensus       114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi  193 (440)
T KOG1464|consen  114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI  193 (440)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence            22234455555666776676666666666566666789999999999999888888877777766665433    33455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS-GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (729)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (729)
                      |..-.++|..+.+-..-..+|++++.+-..+    .+|.+.- +.-.=|..+.+.|+|++|-.-|-+|.+-+........
T Consensus       194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR  269 (440)
T KOG1464|consen  194 YALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR  269 (440)
T ss_pred             HhhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence            5556678888888888888999999885543    2444333 2333456788899999999999999888877633333


Q ss_pred             cHHHHHHHHHHHHHHcC
Q 004811          556 TVAGIEAQMGVMYYMLG  572 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g  572 (729)
                      ....-|..||..+.+.|
T Consensus       270 ttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  270 TTCLKYLVLANMLMKSG  286 (440)
T ss_pred             hHHHHHHHHHHHHHHcC
Confidence            44445667888887766

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=4.4e-05  Score=78.36  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=101.5

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004811          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (729)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (729)
                      |-.++...++++.|+.++++..+..+.           +...++.++...++..+|+..+.+++.      ..|.....+
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL  237 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL  237 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence            344555678999999999998766532           356689999999999999999999984      234447888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (729)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (729)
                      ...+..+...++++.|+.+.++++.+        .|.....|..|+.+|...|+++.|+..++.+
T Consensus       238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            89999999999999999999999999        7999999999999999999999999777643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.14  E-value=2.9e-05  Score=73.43  Aligned_cols=102  Identities=19%  Similarity=0.235  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (729)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (729)
                      +++.|.-+++.|+|..|...|..-++.++.     ....+.+++.||.+++.+|+++.|...|..+++-     -|.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence            678888899999999999999998886432     4456789999999999999999999999999886     344788


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      ..++++.||.+...+|+.++|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            88899999999999999999999999999875

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=0.0058  Score=59.15  Aligned_cols=302  Identities=13%  Similarity=0.077  Sum_probs=192.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811          398 MGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (729)
Q Consensus       398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (729)
                      .+.......++++++..|...+.........+    ..-.....+|.+|...|+..+-..........+....   .+..
T Consensus        10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kaka   86 (411)
T KOG1463|consen   10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKA   86 (411)
T ss_pred             HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHH
Confidence            33344445566777777766654322222222    2234567899999999999988777776666655443   3444


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811          474 ASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (729)
Q Consensus       474 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (729)
                      +.....+-..... -+..+.-+.++..+++...+.   .........-..+..+|...++|.+|+.+....+.-.... +
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-D  162 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-D  162 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-c
Confidence            4444444444433 345667778888888876542   1122223344578899999999999999999988888776 6


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      +...+..++..-..+|+...+..+|...+..|........-+ |...+..-..-|.++....+|.-|..||-+|.+-+..
T Consensus       163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s  241 (411)
T KOG1463|consen  163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS  241 (411)
T ss_pred             cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence            666666777777889999999999999888877665444332 2223333344466777778999999999999988766


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHH
Q 004811          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLET  710 (729)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~  710 (729)
                      ...  +.....++-.+-.|-...+..++--.++..=..+.      ......+++...|..+..  +.+++.|. ..|+.
T Consensus       242 ~~~--~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL-~~yk~  312 (411)
T KOG1463|consen  242 LDD--DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK------YAGRDIDAMKAVAEAFGNRSLKDFEKAL-ADYKK  312 (411)
T ss_pred             cCC--cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh------ccCcchHHHHHHHHHhcCCcHHHHHHHH-HHhHH
Confidence            543  34444444455555556666665554443222221      123345677777777653  45677777 77766


Q ss_pred             HHhhcc
Q 004811          711 LLDANS  716 (729)
Q Consensus       711 al~~~p  716 (729)
                      -+.-||
T Consensus       313 eL~~D~  318 (411)
T KOG1463|consen  313 ELAEDP  318 (411)
T ss_pred             HHhcCh
Confidence            666555

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.11  E-value=0.00021  Score=62.71  Aligned_cols=150  Identities=19%  Similarity=0.196  Sum_probs=109.1

Q ss_pred             chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (729)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (729)
                      =+.+.+..-..+.+.+.+..        .-.+.||..+...|++.+|..+|++++.-.   .    ......+..++.+.
T Consensus        70 ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr~~EA~~hy~qalsG~---f----A~d~a~lLglA~Aq  134 (251)
T COG4700          70 LDPERHLREATEELAIAPTV--------QNRYRLANALAELGRYHEAVPHYQQALSGI---F----AHDAAMLLGLAQAQ  134 (251)
T ss_pred             cChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c----CCCHHHHHHHHHHH
Confidence            34444444444455554433        334678999999999999999999988631   1    11246788899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      +..+++..|...+++..+.-     + ..........+|.+|..+|++.+|...|+.++..+        |. ..+....
T Consensus       135 fa~~~~A~a~~tLe~l~e~~-----p-a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y  199 (251)
T COG4700         135 FAIQEFAAAQQTLEDLMEYN-----P-AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYY  199 (251)
T ss_pred             HhhccHHHHHHHHHHHhhcC-----C-ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHH
Confidence            99999999999999887761     1 11223356788999999999999999999999763        33 4566677


Q ss_pred             HHHHHHhCCHhHHHHHHHHHH
Q 004811          691 AELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       691 a~~~~~~g~~~~A~~~~l~~a  711 (729)
                      +..+.++|+.++|. ..+..+
T Consensus       200 ~e~La~qgr~~ea~-aq~~~v  219 (251)
T COG4700         200 AEMLAKQGRLREAN-AQYVAV  219 (251)
T ss_pred             HHHHHHhcchhHHH-HHHHHH
Confidence            89999999998887 544443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.10  E-value=0.0041  Score=61.93  Aligned_cols=256  Identities=14%  Similarity=0.088  Sum_probs=143.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhc----CCC--CCHH
Q 004811          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDN----GSP--ASLE  390 (729)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~----~~~--~~~~  390 (729)
                      ....|+++.|..++.++-..........-...+..+++.|......+ +++.|..++++++++....    ...  ....
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999877532111112346678899999999999 9999999999999996441    111  1134


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          391 EAADRRLMGLICETKGDHEAALEHLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (729)
Q Consensus       391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (729)
                      ...++..++.+|...+.++....... ++... ...++++...   ...-.++...++.+.+.+.+.+++....-     
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l~~e~~~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----  153 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALN-ALRLLESEYGNKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH-----  153 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHhCCCCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence            56788999999999988765554332 22222 3334444332   22223333378888888888888775210     


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHH
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA--IKLLQKALKIY  547 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~~~  547 (729)
                      ..............+.. .....|...+...+...-..  ..+. .........-.+....++....  ++.+...+...
T Consensus       154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v  229 (278)
T PF08631_consen  154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV  229 (278)
T ss_pred             ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence            01111111121222222 23456666666666543221  1111 1222222221111222222222  33333333332


Q ss_pred             HhCCCCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          548 NDAPGQQS------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       548 ~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                      ....+.+.      ....++.+.|...++.++|+.|..+|+-++.
T Consensus       230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            22222221      2224466789999999999999999997763

It is also involved in sporulation [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.09  E-value=0.00011  Score=62.75  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      ...++.-|...+..|+|.+|++.|+......+     .......+...++.+|+..+++++|+..+++.+++     .|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence            45567889999999999999999988766532     23345678899999999999999999999999998     566


Q ss_pred             ChhHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 004811          638 HPDTLGVYSNLAGTYDAIGR---------------LDDAIEILEFVVGIREEKLGTANPDVDDE  686 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~g~~~p~~~~~  686 (729)
                      ||....+++..|.++..+..               ..+|...|++.+..+     |+++...++
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y-----P~S~ya~dA  138 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY-----PNSEYAADA  138 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC-----cCChhHHHH
Confidence            88888899999999988876               788888888888765     444444444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.0052  Score=57.35  Aligned_cols=241  Identities=13%  Similarity=0.071  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchh----------hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----------EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG  334 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  334 (729)
                      ...|...-.++.++..+++|..-+...-+++..          .++......-+.....-|.+....|+..+.+.-+...
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L  148 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL  148 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            334444455666777777777666554443311          0111111122334455677777888888887766665


Q ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 004811          335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH  414 (729)
Q Consensus       335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~  414 (729)
                      .....++               -..+......+..+..+++-+.              .+.+.+..++.-.|.|.-.+..
T Consensus       149 ~~~V~~i---------------i~~~e~~~~~ESsv~lW~KRl~--------------~Vmy~~~~~llG~kEy~iS~d~  199 (366)
T KOG2796|consen  149 KTVVSKI---------------LANLEQGLAEESSIRLWRKRLG--------------RVMYSMANCLLGMKEYVLSVDA  199 (366)
T ss_pred             HHHHHHH---------------HHHHHhccchhhHHHHHHHHHH--------------HHHHHHHHHHhcchhhhhhHHH
Confidence            5543221               1111122222444555554433              2366777888888889888888


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811          415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK  494 (729)
Q Consensus       415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  494 (729)
                      +.+.+.     .+++........+|.+.++.|+.+.|..+|+++-+......+  -.....+..+.+.+|.-.+++..|.
T Consensus       200 ~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~~n~a~i~lg~nn~a~a~  272 (366)
T KOG2796|consen  200 YHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVLMNSAFLHLGQNNFAEAH  272 (366)
T ss_pred             HHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHHhhhhhheecccchHHHH
Confidence            887765     233444456677899999999999999999977655444432  3445567778888899999999999


Q ss_pred             HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      ..|.+++..         ++..+.+.++.|.|+...|+..+|++.++.++++.|..
T Consensus       273 r~~~~i~~~---------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  273 RFFTEILRM---------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHhhcccc---------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            999888877         44456778889999999999999999999998887755

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.00014  Score=69.84  Aligned_cols=116  Identities=20%  Similarity=0.166  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhc
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQEC  634 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  634 (729)
                      +.-|..||.+|+.+|++..|...|.+|+++..        .....+..+|.++..+.   ...++..+|++++..     
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----  222 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAG--------DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-----  222 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence            46788999999999999999999999999832        13567778888777653   468999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 004811          635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL  693 (729)
Q Consensus       635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~  693 (729)
                         +|....+++.||..++..|+|.+|+..++..++..    .++.|....+-..++..
T Consensus       223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~  274 (287)
T COG4235         223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA  274 (287)
T ss_pred             ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence               99999999999999999999999999999998753    34555544444444433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.07  E-value=0.006  Score=60.77  Aligned_cols=257  Identities=12%  Similarity=0.066  Sum_probs=145.6

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-ChHHHHHHHHHhcccchh-----hccccch
Q 004811          231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVI-----EEGQEHA  304 (729)
Q Consensus       231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~  304 (729)
                      .+..|+ ++.|..++.++-.... ......-...+..+++.|......+ +++.|..+++++.++...     ...++..
T Consensus         3 A~~~~~-~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~   80 (278)
T PF08631_consen    3 AWKQGD-LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS   80 (278)
T ss_pred             chhhCC-HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence            356776 9999999999988765 2111111556788999999999999 999999999999998532     2223333


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811          305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (729)
Q Consensus       305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (729)
                      ...+.++..++.+|...+.++...+ ...++.......    |+....+..--.++...++.+.+.+.+.+++....-..
T Consensus        81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e  155 (278)
T PF08631_consen   81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE  155 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence            5567889999999999988765444 334444443332    33333333333333347888888888888877543121


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHH
Q 004811          385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL--SRYDEA--GFAYQKALT  460 (729)
Q Consensus       385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~  460 (729)
                      ..  ..  .+...+-.  ........|...+...+........+. ..... .+-.++...  ++....  ++.....+.
T Consensus       156 ~~--~~--~~l~~i~~--l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~  227 (278)
T PF08631_consen  156 SN--FD--SILHHIKQ--LAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLS  227 (278)
T ss_pred             ch--HH--HHHHHHHH--HHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHH
Confidence            11  10  01111111  112234556666655553222221111 22221 122222222  222222  444444444


Q ss_pred             HHHHhcC-CCChhH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          461 AFKTNKG-ENHPAV----ASVFVRLADMYNRTGKLRESKSYCENALR  502 (729)
Q Consensus       461 ~~~~~~~-~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (729)
                      ...+..+ +-.+..    ...+.+.|.-.++.++|++|..+|+-++.
T Consensus       228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            3322221 112222    23455668889999999999999998774

It is also involved in sporulation [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.07  E-value=0.021  Score=58.99  Aligned_cols=441  Identities=13%  Similarity=0.025  Sum_probs=237.8

Q ss_pred             ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811          211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ  290 (729)
Q Consensus       211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  290 (729)
                      .+....+|.+...|..+.+.+-.+ . +++..+.|++-+..+         |..+.+|.......+...+|+....+|.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~R   78 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSR   78 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            345568999999999999877666 5 999999999988876         33455666667777888999999999999


Q ss_pred             hcccchhhccccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH--------
Q 004811          291 SIEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV--------  361 (729)
Q Consensus       291 al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--------  361 (729)
                      +|.-.          ..+..| +.|-.+....|+...+....-+|.++.....| -++.....|...+..+.        
T Consensus        79 CLvkv----------LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~  147 (656)
T KOG1914|consen   79 CLVKV----------LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKY  147 (656)
T ss_pred             HHHHH----------hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccH
Confidence            98642          111122 22444455566666666666677666555444 23444444544443322        


Q ss_pred             -HhcCHHHHHHHHHHHHHHHHhcCCC-----CCHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC-C-----
Q 004811          362 -QALQFSEAQKFCQMALDIHKDNGSP-----ASLE-EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-D-----  428 (729)
Q Consensus       362 -~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~-~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-----  428 (729)
                       ...+.+.....|++|+..--.+...     ...+ ........-.+-.....|-.|...+++...+...... .     
T Consensus       148 ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~  227 (656)
T KOG1914|consen  148 EENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPP  227 (656)
T ss_pred             HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence             2335566667777776432111000     0000 0000001111222334566666666665544332111 0     


Q ss_pred             ------hhHHHHHHHHHHHHHHc------CCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHH-------HHHHHHHHc
Q 004811          429 ------AEVASVDCSIGDTYLSL------SRY--DEAGFAYQKALTAFKTNKGENHPAVASVFV-------RLADMYNRT  487 (729)
Q Consensus       429 ------~~~~~~~~~la~~~~~~------g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~la~~~~~~  487 (729)
                            ......|.++-..-...      |..  ..-.-.|++++..+        +..+.+|+       ..+.++...
T Consensus       228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l--------~~~peiWy~~s~yl~~~s~l~~~~  299 (656)
T KOG1914|consen  228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL--------GYHPEIWYDYSMYLIEISDLLTEK  299 (656)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhhHHHHHh
Confidence                  01122222222111111      111  11122344444431        22233333       445555566


Q ss_pred             CCHH-------HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHhCCCCCCcH
Q 004811          488 GKLR-------ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPGQQSTV  557 (729)
Q Consensus       488 g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~  557 (729)
                      |+..       ++..+|++++.....        .....+..++..-...-   +++.-..++++++.+....+      
T Consensus       300 ~d~~~a~~~t~e~~~~yEr~I~~l~~--------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~------  365 (656)
T KOG1914|consen  300 GDVPDAKSLTDEAASIYERAIEGLLK--------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL------  365 (656)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC------
Confidence            6554       455555555544211        12223333333222222   25555666777766654332      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      ..+|..+-..-.+..-...|...|.+|-+.-+.   .++   ..+...+- -|...++..-|...|+-.+..        
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~---~hh---VfVa~A~m-Ey~cskD~~~AfrIFeLGLkk--------  430 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT---RHH---VFVAAALM-EYYCSKDKETAFRIFELGLKK--------  430 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC---cch---hhHHHHHH-HHHhcCChhHHHHHHHHHHHh--------
Confidence            233445555555556677788888887653111   111   12222222 244578999999999999988        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      .++....-......+...++-..|..+|++++..   .  -........|..+-..-..-|+..... +.-++-....|
T Consensus       431 f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~--l~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~~af~  503 (656)
T KOG1914|consen  431 FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS---V--LSADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRFTAFP  503 (656)
T ss_pred             cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc---c--CChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhcc
Confidence            4555555556667788899999999999999864   1  111233456666666667778877766 55444444444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0009  Score=62.22  Aligned_cols=141  Identities=14%  Similarity=0.029  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      ..+.+.++.++.-.+.|.-.+..+.+.++..+...       ......+|.+..+.||.+.|..+|+...+.........
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q  249 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ  249 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc
Confidence            34566777888888999999999999988553322       34577899999999999999999997766555555556


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      ....+..+.+.+|.-.+++..|...|.+++..        ++..+.+.++.|.|+...|+...|++.++.++....
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            66677888899999999999999999999887        788889999999999999999999999999998843

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.05  E-value=2.3e-05  Score=60.20  Aligned_cols=58  Identities=26%  Similarity=0.381  Sum_probs=54.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      |..+|...+++++|++++++++.+        +|+....+..+|.++..+|++.+|+..|+++++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356889999999999999999999        8999999999999999999999999999999977

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.03  E-value=0.00055  Score=63.75  Aligned_cols=240  Identities=13%  Similarity=0.089  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004811          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (729)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (729)
                      +++|+.-|++++++-     +.....-..++-.+..+++++|+|++-...|.+.+.........+.....+......   
T Consensus        43 p~~Al~sF~kVlelE-----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy---  114 (440)
T KOG1464|consen   43 PKEALSSFQKVLELE-----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY---  114 (440)
T ss_pred             HHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH---
Confidence            899999999998864     222233356788889999999999999999999987755444444433322222221   


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH----HHHH
Q 004811          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAA  393 (729)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~  393 (729)
                      -....+.+--..+|+..+...+..  .++......-..||.+|+..++|.+-...+++.-..+....+.+..    ....
T Consensus       115 iStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE  192 (440)
T KOG1464|consen  115 ISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE  192 (440)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence            122333444445666666554432  1122233455679999999999999888888877766655443322    2234


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (729)
Q Consensus       394 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (729)
                      +|..-..+|..+.+-..-...|++++.+-...+.+.-...+.-.=|..+.+.|+|++|-.-|-+|.+-+...+.+ ....
T Consensus       193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRtt  271 (440)
T KOG1464|consen  193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRTT  271 (440)
T ss_pred             hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chhH
Confidence            455556677788888888888999987766665554445555556778899999999999998888877666532 2233


Q ss_pred             HHHHHHHHHHHHHcC
Q 004811          474 ASVFVRLADMYNRTG  488 (729)
Q Consensus       474 ~~~~~~la~~~~~~g  488 (729)
                      ..-|..||.++...|
T Consensus       272 CLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  272 CLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            445666777777655

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.033  Score=61.71  Aligned_cols=148  Identities=16%  Similarity=0.127  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-C
Q 004811          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-S  555 (729)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~  555 (729)
                      |..||..+..+|+|..|....++|-..              .+|-..+..+...+.+.-|.-+            |.. .
T Consensus      1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~--------------ktWK~VcfaCvd~~EFrlAQiC------------GL~ii 1276 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANST--------------KTWKEVCFACVDKEEFRLAQIC------------GLNII 1276 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccch--------------hHHHHHHHHHhchhhhhHHHhc------------CceEE
Confidence            445566666666666666655554322              2344444444444444333211            111 1


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHH
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS---ILEQ  632 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~  632 (729)
                      ..+.-+-.+...|...|-|++-+.+++.++-+-+.        ..-.+..||.+|.+- ++++-.++++-...   +-+-
T Consensus      1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKv 1347 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKV 1347 (1666)
T ss_pred             EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHH
Confidence            12233455677778888888888888877766433        223456666666543 34444444332221   1000


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004811          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (729)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (729)
                      +.   ..+.+..|..|..+|.+-..|+.|.
T Consensus      1348 iR---A~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1348 IR---AAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HH---HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            00   1223335566666666666666554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.01  E-value=1.8e-05  Score=75.79  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=90.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 004811          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV  683 (729)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~  683 (729)
                      -..|.-|+++|.|++|+.+|.+++..        +|.+...+.+.|.+|+++.+|..|...+..|+.+        +..+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence            44688899999999999999999998        8888889999999999999999999999999988        4678


Q ss_pred             HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..+|.+.+.....+|+..+|. +.++.+|.+.|+
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAK-kD~E~vL~LEP~  197 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAK-KDCETVLALEPK  197 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHH-HhHHHHHhhCcc
Confidence            899999999999999999999 999999999997

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.013  Score=55.34  Aligned_cols=232  Identities=13%  Similarity=0.051  Sum_probs=154.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (729)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (729)
                      ..+|+-....+++++|+..|.+.+...-..-.....+...+...++.+|...|++..-.+......+...+...+   ..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~---k~   83 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP---KI   83 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch---hH
Confidence            456777778889999999998877551000000012344577889999999999877666665555544443322   11


Q ss_pred             HHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          392 AADRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (729)
Q Consensus       392 a~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (729)
                      +.+...+-. +-.....++.-+..+...++........-.....-..+..+++..|.|.+|+......+.-+++..  +.
T Consensus        84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK  161 (421)
T COG5159          84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DK  161 (421)
T ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cc
Confidence            222222222 223345567777777766665544433333344556788899999999999999999988888775  46


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      +....++..-..+|....+..++..-+..|........  -++...+..-..-|.+++...+|.-|..||-++++-+...
T Consensus       162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l  239 (421)
T COG5159         162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL  239 (421)
T ss_pred             cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence            77777888888999999999999988888877765542  1122233333444666777889999999999998876544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.94  E-value=0.025  Score=68.60  Aligned_cols=411  Identities=11%  Similarity=0.054  Sum_probs=207.0

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004811          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL  305 (729)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  305 (729)
                      .+|..-++.+. |..|+-++++-      .....+.......+..+-.+|...++++........-...       .   
T Consensus      1388 tLa~aSfrc~~-y~RalmylEs~------~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-------~--- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKA-YARALMYLESH------RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-------P--- 1450 (2382)
T ss_pred             HHHHHHHhhHH-HHHHHHHHHHh------ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-------c---
Confidence            56767777776 77777777763      0111111222334555666899999998877776631111       0   


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                          .+...-..+...|++..|..+|+++++.        +|+....+...-......|.+...+...+-.......   
T Consensus      1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se--- 1515 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE--- 1515 (2382)
T ss_pred             ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhccCH---
Confidence                1444556677889999999999999887        4554433443333444455555555433322211110   


Q ss_pred             CCCHHHHHHHHHHH-HHHHHhCCHHHHHHHHH-----------HHHHHHHhCCCChhHHHHHHHHHHH----------HH
Q 004811          386 PASLEEAADRRLMG-LICETKGDHEAALEHLV-----------LASMTMIANDQDAEVASVDCSIGDT----------YL  443 (729)
Q Consensus       386 ~~~~~~a~~~~~lg-~~~~~~g~~~~A~~~~~-----------~al~~~~~~~~~~~~~~~~~~la~~----------~~  443 (729)
                          +. .-++.++ .+.++.++++.-..+..           .+.........+.  ...+..+...          ..
T Consensus      1516 ----~~-~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~--~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1516 ----EV-DELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDE--IATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred             ----HH-HHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccch--hhHHHHHHHHHHHhhhhHHHhh
Confidence                00 1111111 22244555544443321           0000000000010  0000001000          01


Q ss_pred             HcCCHHHHHHHHHHHHHHHHH------h----cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          444 SLSRYDEAGFAYQKALTAFKT------N----KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      ..|-|..+.++.-+...+++-      .    .+.+......-|.+....-....+..+-+-.+++++-.....  ....
T Consensus      1589 ~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~ 1666 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLK 1666 (2382)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--cccc
Confidence            111333333333322222110      0    011111111222222222112222444444455554443221  1335


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-G  592 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~  592 (729)
                      .....+|...|++....|+++.|..++-.|.+..         ...++...|..+..+|+...|+..+++.+.....- .
T Consensus      1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred             chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence            6678999999999999999999999888887654         24677889999999999999999999999765432 1


Q ss_pred             CC--------CChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH----------
Q 004811          593 ER--------KSAFFGVALNQMGLACVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY----------  652 (729)
Q Consensus       593 ~~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----------  652 (729)
                      ..        +......+...++......+++  ..-+.+|..+.++        +|.....++.+|..|          
T Consensus      1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~kll~~~~~~ 1809 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDKLLEDYKSN 1809 (2382)
T ss_pred             CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHHHhhhhhcc
Confidence            11        1111222344444545555553  4566788888888        554444555555433          


Q ss_pred             --HHcCChHH---HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811          653 --DAIGRLDD---AIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       653 --~~~g~~~~---A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (729)
                        ...|++..   |+-.|.+++..-.+..-..-|.....|..+|...
T Consensus      1810 ~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~ 1856 (2382)
T KOG0890|consen 1810 KMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHI 1856 (2382)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchh
Confidence              34456555   5555556654322222223355555555544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.91  E-value=3.7e-05  Score=59.07  Aligned_cols=61  Identities=25%  Similarity=0.319  Sum_probs=57.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      |..+|...+++++|+.++++++.+        +|+....+..+|.++...|++.+|. ..|+.+++.+|+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p~   61 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSPD   61 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCCC
Confidence            457899999999999999999987        6889999999999999999999999 999999999997

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.90  E-value=4.1e-05  Score=77.95  Aligned_cols=69  Identities=22%  Similarity=0.152  Sum_probs=63.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH---HHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD---DEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~---~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                      .+|+...+++++|.+|..+|++++|+..|++++++        +|+..   .+++++|.+|..+|++++|+ .+|+++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAl-a~LrrALe  140 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAA-DCLRTALR  140 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            37888999999999999999999999999999988        46655   56999999999999999999 99999999


Q ss_pred             h
Q 004811          714 A  714 (729)
Q Consensus       714 ~  714 (729)
                      +
T Consensus       141 l  141 (453)
T PLN03098        141 D  141 (453)
T ss_pred             h
Confidence            7

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.90  E-value=0.022  Score=59.38  Aligned_cols=151  Identities=10%  Similarity=0.041  Sum_probs=107.9

Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-ILEQ  632 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~  632 (729)
                      .......+..++.+..+.|+++.|...+.++..........    ...+....+.++...|+..+|+..++..+. ....
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~  217 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK  217 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            34556788999999999999999999998877643221111    235666778999999999999999998888 3332


Q ss_pred             hc-------------------------CCCChhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          633 EC-------------------------GPYHPDTLGVYSNLAGTYDAI------GRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       633 ~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      ..                         .......+.++..+|......      +..++++..|.+++.+        +|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~  289 (352)
T PF02259_consen  218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP  289 (352)
T ss_pred             ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence            20                         111234456777888888777      8899999999999987        57


Q ss_pred             hHHHHHHHHHHHHHHhCCHh-----------------HHHHHHHHHHHhhccc
Q 004811          682 DVDDEKRRLAELLKEAGRVR-----------------SRKAQSLETLLDANSR  717 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~-----------------~A~~~~l~~al~~~p~  717 (729)
                      ....+++.+|..+...-+.+                 .|+ ..|-+++...+.
T Consensus       290 ~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai-~~y~~al~~~~~  341 (352)
T PF02259_consen  290 SWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAI-EGYLKALSLGSK  341 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHH-HHHHHHHhhCCC
Confidence            77788888888876542222                 255 666666666665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.90  E-value=4.4e-05  Score=77.70  Aligned_cols=67  Identities=18%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG---VYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      +..+..++++|.+|..+|+|++|+..|++++++        +|+...   +|+++|.+|..+|++++|+.++++++++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999        777764   5999999999999999999999999986

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.85  E-value=0.051  Score=56.30  Aligned_cols=396  Identities=10%  Similarity=-0.016  Sum_probs=203.2

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (729)
                      |....+|+.|-.-+..+ -++++...|++.+...     +..+.    +|...........+|+....+|.++|.-.-  
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-----P~s~r----~W~~yi~~El~skdfe~VEkLF~RCLvkvL--   84 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-----PSSPR----AWKLYIERELASKDFESVEKLFSRCLVKVL--   84 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-----CCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--
Confidence            55677888887777666 8999999999999876     33332    477777778888999999999999987621  


Q ss_pred             hCCCCchHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH---------HHhCCHHHH
Q 004811          342 LGETDPRVGETC-RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC---------ETKGDHEAA  411 (729)
Q Consensus       342 ~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~---------~~~g~~~~A  411 (729)
                             ....| ..|-.+....++...+.....+|.+..-....- .+....+|...+..+         ....+.+..
T Consensus        85 -------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~v  156 (656)
T KOG1914|consen   85 -------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAV  156 (656)
T ss_pred             -------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHHHHHHHHHH
Confidence                   22222 233344445566555655555555544333221 111112233322222         222355556


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHH-------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------C-
Q 004811          412 LEHLVLASMTMIANDQDAEVASVDC-------------SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-------H-  470 (729)
Q Consensus       412 ~~~~~~al~~~~~~~~~~~~~~~~~-------------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~-  470 (729)
                      ...|++|+..    +- ...-..|.             ..-.+-.....|..|...+++...+.+-..-.+       . 
T Consensus       157 RriYqral~t----Pm-~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~  231 (656)
T KOG1914|consen  157 RRIYQRALVT----PM-HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK  231 (656)
T ss_pred             HHHHHHHhcC----cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence            6677777531    10 00111111             111122234456677777766655543221100       0 


Q ss_pred             --hhHHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH-------
Q 004811          471 --PAVASVFVRLADMYNRTG------KL--RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-------  533 (729)
Q Consensus       471 --~~~~~~~~~la~~~~~~g------~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------  533 (729)
                        ......|.++...-...+      ..  ..-.-.|++++..+.-.  ..-..+....+...+.++...|+.       
T Consensus       232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t  309 (656)
T KOG1914|consen  232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLT  309 (656)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence              011222333322211111      11  11222345555442110  000111223344455566666654       


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811          534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (729)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (729)
                      +++..+|++++......      ...+++.++..-...-   .++.--.++++++.+...    +   ...++..+-..-
T Consensus       310 ~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~----~---~tLv~~~~mn~i  376 (656)
T KOG1914|consen  310 DEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI----D---LTLVYCQYMNFI  376 (656)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc----C---CceehhHHHHHH
Confidence            45555555555543322      1222333332222211   244555566666554321    1   123444444445


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 004811          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG-TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (729)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (729)
                      .+..-...|...|.+|.+.-.      .+.  .++..-|. =|..+++.+-|...|+-.+..+     ++.|..   ...
T Consensus       377 rR~eGlkaaR~iF~kaR~~~r------~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf-----~d~p~y---v~~  440 (656)
T KOG1914|consen  377 RRAEGLKAARKIFKKAREDKR------TRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKF-----GDSPEY---VLK  440 (656)
T ss_pred             HHhhhHHHHHHHHHHHhhccC------Ccc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhc-----CCChHH---HHH
Confidence            555557788888888776411      121  22222222 2566899999999999888764     334444   444


Q ss_pred             HHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          690 LAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       690 La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      ....+...++-..+. ..|++++..
T Consensus       441 YldfL~~lNdd~N~R-~LFEr~l~s  464 (656)
T KOG1914|consen  441 YLDFLSHLNDDNNAR-ALFERVLTS  464 (656)
T ss_pred             HHHHHHHhCcchhHH-HHHHHHHhc
Confidence            566778888888888 899998876

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.85  E-value=0.043  Score=60.27  Aligned_cols=230  Identities=17%  Similarity=0.116  Sum_probs=141.0

Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (729)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (729)
                      ..++|.+|+..+.+.++..|+..        .+...-|..+.++|+.++|..+++.. ..     ..+..-..+..+-.+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~--------~a~vLkaLsl~r~gk~~ea~~~Le~~-~~-----~~~~D~~tLq~l~~~   86 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNAL--------YAKVLKALSLFRLGKGDEALKLLEAL-YG-----LKGTDDLTLQFLQNV   86 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHhcCchhHHHHHhhh-cc-----CCCCchHHHHHHHHH
Confidence            45789999999999998887653        34666788899999999999666532 21     122244566778899


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      |..++++++|..+|++++..        .|. -..+..+-.+|.+.+.|.+-.+.   ++++++..  +...   ...|.
T Consensus        87 y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~--pk~~---yyfWs  149 (932)
T KOG2053|consen   87 YRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNF--PKRA---YYFWS  149 (932)
T ss_pred             HHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC--Cccc---chHHH
Confidence            99999999999999999987        566 66777777888888877654433   33333321  1112   22333


Q ss_pred             HHHHHHHhcchHHHHHH-----HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004811          522 DVSSIYESMNELEQAIK-----LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (729)
                      -+..+.......++...     +.++..+..-...|.....+.+. ..-.++..+|++++|...+..-+  .......  
T Consensus       150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~l--a~~l~~~--  224 (932)
T KOG2053|consen  150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITL--AEKLTSA--  224 (932)
T ss_pred             HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHH--HHhcccc--
Confidence            34444443333333322     22222222222223222333332 23345667899999999884322  2222111  


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                        .....+.....+...++|.+-.++..+++..
T Consensus       225 --~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  225 --NLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             --chHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence              1223344556777788888888888887776

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.84  E-value=3.4e-05  Score=51.67  Aligned_cols=41  Identities=44%  Similarity=0.707  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      +.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            45789999999999999999999999999999999999985

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.035  Score=53.85  Aligned_cols=165  Identities=12%  Similarity=-0.019  Sum_probs=128.9

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004811          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (729)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (729)
                      +.+..-.|++.+|-...++.++-+|...        .++..--.+++..|+...-...+++.+..  -+.+.|-...+.-
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G  179 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG  179 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence            4455667899999999999999887664        34666667888899988888888766421  1445666677777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 004811          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (729)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (729)
                      .++..+...|-|++|.+..++++++        ++....+...++.++...|++.++.++..+.-...+..     ....
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-----~mla  246 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-----WMLA  246 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-----hHHH
Confidence            8889999999999999999999999        78888999999999999999999999888765554321     2223


Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          517 ASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                      ..-|-..|.++..-+.|+.|++.|..-+
T Consensus       247 sHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  247 SHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            3445567888888899999999998643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.83  E-value=5.6e-05  Score=57.07  Aligned_cols=53  Identities=30%  Similarity=0.374  Sum_probs=49.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                      +..|++++|+..|++++..        .|....++..+|.+|...|++++|...+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999998        8999999999999999999999999999999887

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.81  E-value=0.06  Score=56.09  Aligned_cols=50  Identities=16%  Similarity=0.119  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          598 FFGVALNQMGLACVQR------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       598 ~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (729)
                      ..+.++..+|......      +..++++..|.+++.+        +|....+++.+|..+...
T Consensus       250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence            3466777788877777      8899999999999999        888888999999887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.75  E-value=0.0014  Score=67.10  Aligned_cols=133  Identities=15%  Similarity=0.100  Sum_probs=97.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc--
Q 004811          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH--  303 (729)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--  303 (729)
                      ......++.. ++++-+++..+|+++.         |+.+.+|..|+.-.  ..-..+|..+|+++++..+...+...  
T Consensus       173 ~IMq~AWRER-np~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~  240 (539)
T PF04184_consen  173 EIMQKAWRER-NPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFL  240 (539)
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence            3344455554 4999999999999986         44577777766532  23467888888888876544333221  


Q ss_pred             --------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811          304 --------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (729)
Q Consensus       304 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (729)
                                    ....+.+...+|.|..++|+.++|++.++..++...      ..+...++.+|..++...+.|.++
T Consensus       241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~  314 (539)
T PF04184_consen  241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADV  314 (539)
T ss_pred             hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHH
Confidence                          112244567899999999999999999999987731      124667899999999999999999


Q ss_pred             HHHHHHH
Q 004811          370 QKFCQMA  376 (729)
Q Consensus       370 ~~~~~~a  376 (729)
                      ..++.+.
T Consensus       315 q~lL~kY  321 (539)
T PF04184_consen  315 QALLAKY  321 (539)
T ss_pred             HHHHHHh
Confidence            9887764

The molecular function of this protein is uncertain.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.71  E-value=0.0027  Score=65.04  Aligned_cols=184  Identities=16%  Similarity=0.207  Sum_probs=121.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 004811          483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (729)
Q Consensus       483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (729)
                      -..+..+...-++...+|+++         .++.+.+|..|+.-  ...-..+|..+|+++++..+...+...       
T Consensus       177 ~AWRERnp~aRIkaA~eALei---------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~-------  238 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEI---------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ-------  238 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHh---------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh-------
Confidence            344566778888888999998         45556777666542  234468899999999988766543211       


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--h
Q 004811          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP--D  640 (729)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~  640 (729)
                          .....|..-+..  ..           .+......+-..+|.+..++|+.++|++.++..++.        .|  +
T Consensus       239 ----~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke--------~p~~~  293 (539)
T PF04184_consen  239 ----FLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE--------FPNLD  293 (539)
T ss_pred             ----hhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCccc
Confidence                111111111110  00           011113455677899999999999999999998876        33  3


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-hCC---------------HhHHH
Q 004811          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE-AGR---------------VRSRK  704 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~-~g~---------------~~~A~  704 (729)
                      ...++.+|..++..++.+.++..++.+.-++       .-|..+...+.-|.+..+ .|+               ...|.
T Consensus       294 ~l~IrenLie~LLelq~Yad~q~lL~kYdDi-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~av  366 (539)
T PF04184_consen  294 NLNIRENLIEALLELQAYADVQALLAKYDDI-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAV  366 (539)
T ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHH
Confidence            5668999999999999999999888876432       135666666665554432 222               12466


Q ss_pred             HHHHHHHHhhccc
Q 004811          705 AQSLETLLDANSR  717 (729)
Q Consensus       705 ~~~l~~al~~~p~  717 (729)
                       +.+.+|++.||.
T Consensus       367 -eAi~RAvefNPH  378 (539)
T PF04184_consen  367 -EAIHRAVEFNPH  378 (539)
T ss_pred             -HHHHHHHHhCCC
Confidence             788999999998

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.68  E-value=0.12  Score=55.51  Aligned_cols=172  Identities=16%  Similarity=0.087  Sum_probs=118.8

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          404 TKGDHEAALEHLVLASMTMIANDQDAEVA----SVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (729)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (729)
                      -.||-+.++..+.++..   ..+-....+    ..|+.....+.    .....+.|.+.+......        .|....
T Consensus       200 F~gdR~~GL~~L~~~~~---~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~l  268 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASK---SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSAL  268 (468)
T ss_pred             cCCcHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHH
Confidence            45889999998887743   111111111    11111111111    234566677777777666        688888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (729)
                      .++..|+++...|+.++|+..|++++......     ..-...++..++.++..+.+|++|..++.+..+...      .
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~------W  337 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK------W  337 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc------c
Confidence            99999999999999999999999988532221     223356788999999999999999999998887422      2


Q ss_pred             cHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhCCCCCh
Q 004811          556 TVAGIEAQMGVMYYMLGNY-------SDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      ..+...+..|.++...|+.       ++|..+|.++-.+..+......+
T Consensus       338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp  386 (468)
T PF10300_consen  338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP  386 (468)
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence            3345567789999999999       88888888887777665444444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.65  E-value=0.13  Score=54.98  Aligned_cols=164  Identities=16%  Similarity=0.106  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811          310 GHMQLGDTYAMLGQLENSLMCYTTGLEV-----QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (729)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (729)
                      .|..+|......-.++-|...|-++-..     .+++     .....--...|.+-..-|+|++|.+.|..+-+..    
T Consensus       694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----  764 (1189)
T KOG2041|consen  694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----  764 (1189)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence            3778888877777788887777665322     1110     0000011223444455688888888875442211    


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT  464 (729)
Q Consensus       385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  464 (729)
                                  .-..++...|+|-...++++..    ....++.....++.++|..+..+..|++|.++|.+.-.....
T Consensus       765 ------------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~  828 (1189)
T KOG2041|consen  765 ------------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQ  828 (1189)
T ss_pred             ------------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Confidence                        1112344455555444444321    112233445556667777777777777777666543221000


Q ss_pred             h--------c------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          465 N--------K------GENHPAVASVFVRLADMYNRTGKLRESKSYCE  498 (729)
Q Consensus       465 ~--------~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  498 (729)
                      .        +      ...-|.....+-.+|.++...|.-++|.+.|-
T Consensus       829 ~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence            0        0      00013333344456666666666666665553

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.65  E-value=0.091  Score=53.37  Aligned_cols=144  Identities=11%  Similarity=0.008  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 004811          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL-AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (729)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (729)
                      +..-|-++..++++.+|...|.+..+-.     ...+. ..-.++.++-.-.+-+    +.+...+..+...++..    
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~-----~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~----   75 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEK-----ESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQF----   75 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHh-----hcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhc----
Confidence            4456888999999999999999987654     11111 1111222222222223    33444444444444443    


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC---CCHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP---ASLE----EAADRRLMGLICETKGDHEAALEHLVLAS  419 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~----~a~~~~~lg~~~~~~g~~~~A~~~~~~al  419 (729)
                      |.........|...++.++|.+|++.+............+   ....    .-..-...+.++...|.+.++...+++.+
T Consensus        76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~  155 (549)
T PF07079_consen   76 GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII  155 (549)
T ss_pred             CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            4555666777888999999999999887665543332211   0000    01112345778889999999999999887


Q ss_pred             HHHHh
Q 004811          420 MTMIA  424 (729)
Q Consensus       420 ~~~~~  424 (729)
                      ..+-.
T Consensus       156 ~~llk  160 (549)
T PF07079_consen  156 ERLLK  160 (549)
T ss_pred             HHHhh
Confidence            65543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00064  Score=62.47  Aligned_cols=108  Identities=17%  Similarity=0.068  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChhHH-------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGP---YHPDTL-------GVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                      .++..-|.-++..|+|.+|...|+.|+..++.+.-.   ..|+..       ..+.+.++|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            466777888999999999999999999988776533   233322       3678899999999999999999998886


Q ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .        +|.+..+++..|.+....=+..+|. ..|.++|+++|.
T Consensus       259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~-~D~~~vL~ldps  296 (329)
T KOG0545|consen  259 H--------HPGNVKAYFRRAKAHAAVWNEAEAK-ADLQKVLELDPS  296 (329)
T ss_pred             c--------CCchHHHHHHHHHHHHhhcCHHHHH-HHHHHHHhcChh
Confidence            5        7999999999999999999999999 999999999997

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.62  E-value=0.0074  Score=53.64  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCCCCCh
Q 004811          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY-SDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      .+...|......++...++..+++++.++...+-.....              ..| ......+...             
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~~-------------   60 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLREL-------------   60 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHHH-------------
Confidence            344456666677888999999999998886542211000              111 1111222211             


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                       ...++..++..+...|++++|+..+++++..        +|....++..+..+|..+|+..+|+..|+++.....+-+|
T Consensus        61 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg  131 (146)
T PF03704_consen   61 -YLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG  131 (146)
T ss_dssp             -HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence             3356777888999999999999999999999        9999999999999999999999999999999999888777


Q ss_pred             CC
Q 004811          678 TA  679 (729)
Q Consensus       678 ~~  679 (729)
                      ..
T Consensus       132 ~~  133 (146)
T PF03704_consen  132 IE  133 (146)
T ss_dssp             --
T ss_pred             cC
Confidence            43

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.59  E-value=0.054  Score=59.66  Aligned_cols=279  Identities=16%  Similarity=0.101  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHH
Q 004811          324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA-----LQFSEAQKFCQMALDI---HKDNGSPASLEEAADR  395 (729)
Q Consensus       324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~---~~~~~~~~~~~~a~~~  395 (729)
                      ...|..+++.+...          ....+...+|.+|..-     .+.+.|+.+|+.+...   ......      ..+.
T Consensus       228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------~~a~  291 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL------PPAQ  291 (552)
T ss_pred             hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC------Cccc
Confidence            46788888877665          3456667777777654     5899999999999872   111111      1347


Q ss_pred             HHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcC
Q 004811          396 RLMGLICETKG-----DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKG  467 (729)
Q Consensus       396 ~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~  467 (729)
                      +.+|.+|....     ++..|+.+|.++...        ....+.+.+|.++..-.   ++..|..+|..|...      
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------  357 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------  357 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence            78899988753     778899999888532        22356678888887755   577899999888764      


Q ss_pred             CCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Q 004811          468 ENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQK  542 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~  542 (729)
                          ....+.+.++.+|..    ..+...|..++.++.+.      +  +   +.+...++.++..- ++++.+...+..
T Consensus       358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~------g--~---~~A~~~~~~~~~~g~~~~~~~~~~~~~  422 (552)
T KOG1550|consen  358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK------G--N---PSAAYLLGAFYEYGVGRYDTALALYLY  422 (552)
T ss_pred             ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc------c--C---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence                345678888888875    35788999999999887      2  1   22333344433322 666666665554


Q ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----C
Q 004811          543 ALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----Y  614 (729)
Q Consensus       543 al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g  614 (729)
                      .....-....   ..+..+..........    .+...+...+.++...          ....+...+|.+|..-    .
T Consensus       423 ~a~~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  423 LAELGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HHHhhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCC
Confidence            4443322210   0011111111111111    1344455555544332          1346777888888754    3


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHHH
Q 004811          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G--RLDDAIEILEFVVGI  671 (729)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al~~  671 (729)
                      +++.|...|..+...        .   ....+++|.++..- |  .+..|..+|.++...
T Consensus       490 d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE  538 (552)
T ss_pred             ChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence            699999999999876        3   77899999998752 1  268888888888753

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.58  E-value=0.14  Score=62.41  Aligned_cols=356  Identities=12%  Similarity=0.035  Sum_probs=184.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (729)
                      .+|.+-++.+.|.+|+-++++- ...     +......-..++.+-.+|...++++.-......-..         +|. 
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~-----ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RST-----EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS- 1451 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccc-----cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc-
Confidence            6788889999999999999985 111     111112222355566689999999877665543111         122 


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                         +...-..+...|+|..|..+|++++...+.....        +...-......|.+...+.+.+-...      ...
T Consensus      1452 ---l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~--------~~g~l~sml~~~~l~t~i~~~dg~~~------~~s 1514 (2382)
T KOG0890|consen 1452 ---LYQQILEHEASGNWADAAACYERLIQKDPDKEKH--------HSGVLKSMLAIQHLSTEILHLDGLII------NRS 1514 (2382)
T ss_pred             ---HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccc--------hhhHHHhhhcccchhHHHhhhcchhh------ccC
Confidence               2333445667899999999999999887764322        22233333444555555543332210      111


Q ss_pred             hHHHHHHHHH-HHHHHcCCHHHHHHHHH-------HHH---HHHHHhcCCCChhHHHHHHHHHHHH----------HHcC
Q 004811          430 EVASVDCSIG-DTYLSLSRYDEAGFAYQ-------KAL---TAFKTNKGENHPAVASVFVRLADMY----------NRTG  488 (729)
Q Consensus       430 ~~~~~~~~la-~~~~~~g~~~~A~~~~~-------~al---~~~~~~~~~~~~~~~~~~~~la~~~----------~~~g  488 (729)
                      +...-++.++ .+-...++++.-..+..       .+.   .+.-...   ..+....+..+....          ...|
T Consensus      1515 e~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~---~kD~~~~~~~i~~~r~~~i~~lsa~s~~~ 1591 (2382)
T KOG0890|consen 1515 EEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNK---KKDEIATLDLIENSRELVIENLSACSIEG 1591 (2382)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhc---ccchhhHHHHHHHHHHHhhhhHHHhhccc
Confidence            1111122221 12244455544433311       000   0000000   000011111111100          0111


Q ss_pred             CHHHHHHHHHHHHH---------HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811          489 KLRESKSYCENALR---------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (729)
Q Consensus       489 ~~~~A~~~~~~al~---------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (729)
                      -|..+.++.-+..-         ...+..++.+......-|.+....-....+..+-+-.+++++-.....++....++.
T Consensus      1592 Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge 1671 (2382)
T KOG0890|consen 1592 SYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGE 1671 (2382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHH
Confidence            22233322222211         111111111111111112222221112223444455556655555444455668899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC--
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GP--  636 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~--  636 (729)
                      +|...|.+....|+++.|..++-.|.+..          .+.++...|..++..|+-..|+..+++.+....... ++  
T Consensus      1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence            99999999999999999999988887641          356788899999999999999999999997654321 11  


Q ss_pred             CChh------HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHH
Q 004811          637 YHPD------TLGVYSNLAGTYDAIGRL--DDAIEILEFVVGI  671 (729)
Q Consensus       637 ~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~  671 (729)
                      +.|.      ...+...++......|++  ..-+.+|+.+.++
T Consensus      1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            0111      122445555656666664  3445667777766

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.53  E-value=0.0064  Score=63.04  Aligned_cols=110  Identities=23%  Similarity=0.278  Sum_probs=79.8

Q ss_pred             ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811          211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ  290 (729)
Q Consensus       211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  290 (729)
                      ......+|..+..+..-+..|..+|. ..+|+.++..|+-.....      .. -.++..+|.++.+.|...+|--++..
T Consensus       203 ~~glq~~~~sw~lH~~as~YWR~~G~-~~~A~~Ca~~a~hf~~~h------~k-di~lLSlaTiL~RaG~sadA~iILhA  274 (886)
T KOG4507|consen  203 HEGLQKNTSSWVLHNMASFYWRIKGE-PYQAVECAMRALHFSSRH------NK-DIALLSLATVLHRAGFSADAAVILHA  274 (886)
T ss_pred             HHhhhcCchhHHHHHHHHHHHHHcCC-hhhhhHHHHHHhhhCCcc------cc-cchhhhHHHHHHHcccccchhheeeh
Confidence            34445667766666555555555664 999999999999875332      11 23466789999999999999988888


Q ss_pred             hcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (729)
Q Consensus       291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (729)
                      |+.-.....+         -++.++.++..++.+.....+|..+.+.
T Consensus       275 A~~dA~~~t~---------n~y~l~~i~aml~~~N~S~~~ydha~k~  312 (886)
T KOG4507|consen  275 ALDDADFFTS---------NYYTLGNIYAMLGEYNHSVLCYDHALQA  312 (886)
T ss_pred             hccCCccccc---------cceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence            7765422222         2677999999999999999999888776

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.52  E-value=0.013  Score=59.34  Aligned_cols=181  Identities=15%  Similarity=0.079  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCC
Q 004811          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      ..+..++-..|....+|+.-+.+.+..-.+ +...  ......+...+|.++.+   .|+.++|+..+..++...   . 
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~---~-  213 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD--VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD---E-  213 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---C-
Confidence            445667777888889998877777655443 1110  11123455677888888   999999999998875431   1 


Q ss_pred             CCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          594 RKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI  664 (729)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  664 (729)
                         ...+.++..+|.+|...         ...++|+..|.++.++        +++. ..-.|++.++...|...+...-
T Consensus       214 ---~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~~~~-Y~GIN~AtLL~~~g~~~~~~~e  281 (374)
T PF13281_consen  214 ---NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------EPDY-YSGINAATLLMLAGHDFETSEE  281 (374)
T ss_pred             ---CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------Cccc-cchHHHHHHHHHcCCcccchHH
Confidence               12346777788777542         2367788888887776        4432 2446777778888865555544


Q ss_pred             HHHHHHHHHHHcC----CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          665 LEFVVGIREEKLG----TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       665 ~~~al~~~~~~~g----~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .++........+|    ...-.....+..++.+..-.|++++|. +.+++++.+.|.
T Consensus       282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~-~a~e~~~~l~~~  337 (374)
T PF13281_consen  282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI-QAAEKAFKLKPP  337 (374)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcCCc
Confidence            4444422222222    112233445567788888899999999 999999999887

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.0078  Score=58.18  Aligned_cols=140  Identities=9%  Similarity=0.005  Sum_probs=65.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .|....++..--.+++.+|+...-...+++.+...    .++.|-...+...++..+...|-|++|.+..++++++    
T Consensus       133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi----  204 (491)
T KOG2610|consen  133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI----  204 (491)
T ss_pred             CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC----
Confidence            33333333444445555555555555554444332    1123444444445555555555555555555555555    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                           ++....+...++.++...|++.++.++..+.-......   .-....-|...+.++...+.|+.|++.|.+
T Consensus       205 -----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s---~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  205 -----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS---WMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             -----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh---hHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence                 22334444555555555555555555554433322211   001122234445555555555555555553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.51  E-value=0.053  Score=55.09  Aligned_cols=206  Identities=11%  Similarity=0.042  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 004811          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS  525 (729)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  525 (729)
                      ..+..+...+.+.+...+...+...-....+..++-..|....+|+.-+.+.+..-.+-     ..+......+....|.
T Consensus       113 e~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-----~~~~~~~~~i~~~yaf  187 (374)
T PF13281_consen  113 ERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-----TCDVANQHNIKFQYAF  187 (374)
T ss_pred             HHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-----ccchhcchHHHHHHHH
Confidence            34444455555666655555532233345566777778999999998888777665541     1112233455667777


Q ss_pred             HHHh---cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCC
Q 004811          526 IYES---MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       526 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      ++.+   .|+.++|+..+..++.....      ....++..+|.+|...         ...++|+..|.++.++-     
T Consensus       188 ALnRrn~~gdre~Al~il~~~l~~~~~------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-----  256 (374)
T PF13281_consen  188 ALNRRNKPGDREKALQILLPVLESDEN------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-----  256 (374)
T ss_pred             HHhhcccCCCHHHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-----
Confidence            8877   89999999999887554322      1245667777777542         23566777777766652     


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ----ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                        +.  ...-.+++.++...|...+...-.++....+..    ....+.-.....+..++.+..-.|++++|+..+++++
T Consensus       257 --~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  257 --PD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             --cc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence              11  123345556666666544333333333311111    1111223344566778888889999999999999999


Q ss_pred             HH
Q 004811          670 GI  671 (729)
Q Consensus       670 ~~  671 (729)
                      .+
T Consensus       333 ~l  334 (374)
T PF13281_consen  333 KL  334 (374)
T ss_pred             hc
Confidence            76

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0035  Score=57.82  Aligned_cols=105  Identities=20%  Similarity=0.240  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----Ch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----SA------FFGVALNQMGLACVQRYSINEAVELFEEARS  628 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (729)
                      .++..-|+-+++.|+|.+|...|..|+..++.+.-..    +.      .....+.+++.|++..|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            4556778999999999999999999999887652221    11      1233678899999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      .        +|.+..+|+..|.+....=+..+|..-|.+++++
T Consensus       259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            8        9999999999999999999999999999999987

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.48  E-value=0.00024  Score=47.40  Aligned_cols=41  Identities=44%  Similarity=0.531  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (729)
                      +.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999998885

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.46  E-value=0.018  Score=46.77  Aligned_cols=120  Identities=18%  Similarity=0.135  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004811          349 VGETCRYLAEA--HVQALQFSEAQKFCQMALDIHKDNGSPASLE----EAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (729)
Q Consensus       349 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  422 (729)
                      ++.+|..|+..  ....|-|++|...+.+++++..........+    .+.++-.|+..+..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            45566665544  4456889999999999999988776543222    36788899999999999999999999999877


Q ss_pred             HhCCC-Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          423 IANDQ-DA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (729)
Q Consensus       423 ~~~~~-~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (729)
                      ...+. +.    ....+.++.|..+...|+.++|+..|+.+-++.....|+
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            65443 22    334555778899999999999999999999987766543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0013  Score=60.35  Aligned_cols=98  Identities=21%  Similarity=0.299  Sum_probs=81.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHH
Q 004811          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE  515 (729)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (729)
                      ..-|..++...+|..|+..|.+++.+        +|..+..+.+.+.+|++..+++.+.....+++++         .+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~N   76 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DPN   76 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------ChH
Confidence            44466677777888888888888887        7888888888899999988999888888888888         566


Q ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      .+..++.+|........|++|+..+.++..+....
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            78888888888888888999999999888887765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0014  Score=63.20  Aligned_cols=106  Identities=14%  Similarity=0.166  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (729)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (729)
                      .+.-+-.-|.-|+...+|..|+..|.+.|...     ..++...+.+|.+.|-+....|+|..|+.-..+++.+      
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            45567778999999999999999999999875     4455567778999999999999999999999999999      


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                        +|....+++.-|.+++.+.++.+|..+++..+.+...
T Consensus       149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence              8999999999999999999999999999998777643

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.43  E-value=0.028  Score=50.48  Aligned_cols=139  Identities=15%  Similarity=0.163  Sum_probs=96.0

Q ss_pred             HHHHHHHcCCH---HHHHHHHHHHHHHHHHhCC------------C-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          564 MGVMYYMLGNY---SDSYDSFKNAISKLRAIGE------------R-KSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       564 la~~~~~~g~~---~~A~~~~~~al~~~~~~~~------------~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      .|.-|....+.   .+|-..|+++++....-..            . ...+-..+...++..+...+++++|+..++.++
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l  116 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL  116 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            44555544433   3666667766665421111            1 122233455677888999999999999999998


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004811          628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQS  707 (729)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~  707 (729)
                      .....     ..-...+-.+||.+...+|.+++|+..+.....         +..........|.++...|+.++|+ ..
T Consensus       117 ~~t~D-----e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w~~~~~elrGDill~kg~k~~Ar-~a  181 (207)
T COG2976         117 AQTKD-----ENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESWAAIVAELRGDILLAKGDKQEAR-AA  181 (207)
T ss_pred             ccchh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccHHHHHHHHhhhHHHHcCchHHHH-HH
Confidence            65211     122233667899999999999999998876542         2334445567799999999999999 99


Q ss_pred             HHHHHhhccc
Q 004811          708 LETLLDANSR  717 (729)
Q Consensus       708 l~~al~~~p~  717 (729)
                      |++++..+++
T Consensus       182 y~kAl~~~~s  191 (207)
T COG2976         182 YEKALESDAS  191 (207)
T ss_pred             HHHHHHccCC
Confidence            9999998654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0012  Score=60.63  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=87.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (729)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  641 (729)
                      ..-|..|+.-..|..|+.+|.+++.+        .+..+..+.+.+.++++..+++.+..-..+|+++        .|+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~   77 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL   77 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence            34566777788899999999999986        3445678899999999999999999999999999        9999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      +...+.||.+......+++|+..+.++..+.+..
T Consensus        78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999887654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.0046  Score=59.80  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (729)
                      +.++..+..+-.-|.-|++..+|..|+..|.+++..  +.  .++...+..|.+.|.+.+..|+|..|+.-..+++.+  
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--  148 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KC--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--  148 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cC--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            444556677777899999999999999999999874  22  234567889999999999999999999999999999  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                            +|....+++.=|.|+..+.++.+|..+.+..+.+.
T Consensus       149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                  99999999999999999999999999999887664

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.41  E-value=0.26  Score=52.69  Aligned_cols=69  Identities=16%  Similarity=0.128  Sum_probs=41.4

Q ss_pred             CCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh----hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT  333 (729)
Q Consensus       258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  333 (729)
                      ..|+|..   |..+|......-.++-|...|-+.-.....    ..+.-+     .--...|.+-..-|+|++|.+.|-.
T Consensus       688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-----s~~~q~aei~~~~g~feeaek~yld  759 (1189)
T KOG2041|consen  688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-----SKEQQRAEISAFYGEFEEAEKLYLD  759 (1189)
T ss_pred             cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-----hHHHHhHhHhhhhcchhHhhhhhhc
Confidence            4577655   667787777777888888888776544210    000000     0123455566667888888887754


Q ss_pred             H
Q 004811          334 G  334 (729)
Q Consensus       334 a  334 (729)
                      +
T Consensus       760 ~  760 (1189)
T KOG2041|consen  760 A  760 (1189)
T ss_pred             c
Confidence            3

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.39  E-value=0.04  Score=49.50  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (729)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (729)
                      ...++..+...+++++|+..++.++....     +......+-.+||.+...+|.+++|+..+.....         +..
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w  157 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESW  157 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccH
Confidence            45678889999999999999999886422     2334566778899999999999999988876543         233


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      ........|.++...|+.++|+..|++++..
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            4445677899999999999999999999986

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.38  E-value=0.043  Score=44.63  Aligned_cols=120  Identities=19%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          516 IASGLTDVSSIY--ESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       516 ~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                      ++.+|..|+..-  ...|-|++|...+.+++++....|....     .-+.++..|+..+..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            345565555543  4557899999999999999988765432     235567789999999999999999999999988


Q ss_pred             HHhCCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          589 RAIGERKSA---FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       589 ~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      .+-++-+..   ....+.++.+..+...|+.++|+..|+.+.++..+..|
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            876554432   23445667788999999999999999999998776554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.38  E-value=0.0077  Score=55.03  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004811          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (729)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (729)
                      +-++.-++-++...+  ......++..+|..|.+.|+++.|++.|.++.+..      .........+..+..+....++
T Consensus        17 ~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------~~~~~~id~~l~~irv~i~~~d   88 (177)
T PF10602_consen   17 EKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC------TSPGHKIDMCLNVIRVAIFFGD   88 (177)
T ss_pred             HHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHhCC
Confidence            334444444443332  46667899999999999999999999999988873      3356678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                      +.....++.++..+.... +++.....+...-|..++..++|..|...|-.+..-
T Consensus        89 ~~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   89 WSHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            999999999999988764 555555556667788888899999999998776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.36  E-value=0.033  Score=61.31  Aligned_cols=269  Identities=16%  Similarity=0.102  Sum_probs=167.2

Q ss_pred             hHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-----ChHHHHHHHHH
Q 004811          220 LGPLLLKQARELISS----GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-----QYNEAIPVLEQ  290 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~----g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~  290 (729)
                      ...+...+|.+++.-    .+|++.|+.++..|...+.+.....    ...+.+.+|.+|....     ++..|+.+|.+
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~  318 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTK  318 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCCCCccccHHHHHHHHHH
Confidence            334455566555443    2459999999999988432221111    1335778899998854     67889999999


Q ss_pred             hcccchhhccccchHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh----
Q 004811          291 SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA----  363 (729)
Q Consensus       291 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----  363 (729)
                      +....     .      ..+.+.+|.++..-.   ++..|..+|..|...          ....+.+.++.+|..-    
T Consensus       319 aA~~g-----~------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  319 AAELG-----N------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYELGLGVE  377 (552)
T ss_pred             HHhcC-----C------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCcC
Confidence            98774     1      224778888888765   578999999988766          3557888888887643    


Q ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004811          364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (729)
Q Consensus       364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (729)
                      .+...|..++.++.+...          +.+...++.++... +.+..+.-.+..........  ....+..+.......
T Consensus       378 r~~~~A~~~~k~aA~~g~----------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~--~q~~a~~l~~~~~~~  445 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKGN----------PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV--AQSNAAYLLDQSEED  445 (552)
T ss_pred             CCHHHHHHHHHHHHHccC----------hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH--HhhHHHHHHHhcccc
Confidence            478899999999887652          12244444444333 77777666654443221111  011111111111111


Q ss_pred             HHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811          443 LSL----SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPE  514 (729)
Q Consensus       443 ~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (729)
                      ...    .+...+...+.++..          .....+...||.+|..-    .+++.|...|..+...         . 
T Consensus       446 ~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~---------~-  505 (552)
T KOG1550|consen  446 LFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ---------G-  505 (552)
T ss_pred             ccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh---------h-
Confidence            111    133444444444432          44567778888888764    4588999999888776         2 


Q ss_pred             HHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHH
Q 004811          515 EIASGLTDVSSIYESM---NELEQAIKLLQKALKIY  547 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~  547 (729)
                        +....++|.++..-   ..+..|..++.++.+..
T Consensus       506 --~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~  539 (552)
T KOG1550|consen  506 --AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED  539 (552)
T ss_pred             --hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence              66788899888651   22788888888877643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.36  E-value=0.0013  Score=58.13  Aligned_cols=92  Identities=16%  Similarity=0.207  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (729)
                      |+.|.+.++.....        +|...+.+++.|.++..+.++   .++..+++.++.-+++.+. -+|+..++++.||.
T Consensus         7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence            56777777777777        899999999999988776544   3455555555544444332 16899999999999


Q ss_pred             HHHHhCC-----------HhHHHHHHHHHHHhhccc
Q 004811          693 LLKEAGR-----------VRSRKAQSLETLLDANSR  717 (729)
Q Consensus       693 ~~~~~g~-----------~~~A~~~~l~~al~~~p~  717 (729)
                      +|..++.           +++|. .+|++|.+.+|.
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~  112 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPN  112 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT
T ss_pred             HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCC
Confidence            9987764           66788 899999999997

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.33  E-value=0.0048  Score=58.13  Aligned_cols=100  Identities=12%  Similarity=0.072  Sum_probs=80.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 004811          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY-----HPDTLGVY  645 (729)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~  645 (729)
                      ...+++|+..|.-|+-...-.... +...+.++..+|++|...|+.+....++++|++.+.+.....     .-+...++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            457888999998888776554444 446788999999999999999888888888888887765422     22445688


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          646 SNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      +.+|.++.+.|++++|..+|.+++..
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            99999999999999999999999864

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.28  E-value=0.0047  Score=58.20  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=82.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC-----ChhHHHH
Q 004811          612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA-----NPDVDDE  686 (729)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-----~p~~~~~  686 (729)
                      ....+++|++.|.-|+-...-... .+...+.++..+|++|..+|+.+....++++|+..+.+.+...     .-+....
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~-~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKE-KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            345789999999999877554433 3456778999999999999999999999999999988876422     2244678


Q ss_pred             HHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          687 KRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       687 ~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      .+.+|.+..+.|++++|. .+|.+++..
T Consensus       168 ~YLigeL~rrlg~~~eA~-~~fs~vi~~  194 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAK-RWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHhCCHHHHH-HHHHHHHcC
Confidence            899999999999999999 999999864

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.27  E-value=0.00068  Score=45.69  Aligned_cols=42  Identities=29%  Similarity=0.499  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (729)
                      .++..+|.+|..+|++++|+..|+++++.        +|++..++..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            36889999999999999999999999987        6888889988875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.24  E-value=0.00067  Score=45.73  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  650 (729)
                      .++..+|.+|...|++++|++.|+++++.        +|+...++..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            46788999999999999999999999999        8999999988875

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.24  E-value=0.02  Score=52.36  Aligned_cols=125  Identities=16%  Similarity=0.113  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811          415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK  494 (729)
Q Consensus       415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  494 (729)
                      ++.-+.....+........++..+|..|...|+++.|++.|.++.+.+..     .......+..+..+....+++....
T Consensus        19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~   93 (177)
T PF10602_consen   19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVE   93 (177)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            33333433445556677788999999999999999999999998876322     3456778889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                      .++.++-.+...   +.+..........-|..+...++|.+|-..|-.+...+
T Consensus        94 ~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   94 KYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            999999999877   33344444555566777778899999998887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.22  E-value=0.4  Score=50.89  Aligned_cols=393  Identities=13%  Similarity=0.044  Sum_probs=230.8

Q ss_pred             cccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (729)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (729)
                      ..+.......|-.-..|...|..-++.|. .+.++..|++++..+...      .+.  -+..++.+--..|+.+.-...
T Consensus        66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~S------vdl--W~~Y~~f~~n~~~d~~~lr~~  136 (577)
T KOG1258|consen   66 EVYDIFLSKYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPLS------VDL--WLSYLAFLKNNNGDPETLRDL  136 (577)
T ss_pred             HHHHHHHhhCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhH------HHH--HHHHHHHHhccCCCHHHHHHH
Confidence            45556667889999999999999999996 999999999999887422      111  122234444456777888888


Q ss_pred             HHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-----
Q 004811          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ-----  362 (729)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----  362 (729)
                      |++|+.......-. +     ..|-..-..-..++++..-...|++.++.-..        ...-++..-.-+..     
T Consensus       137 fe~A~~~vG~dF~S-~-----~lWdkyie~en~qks~k~v~~iyeRileiP~~--------~~~~~f~~f~~~l~~~~~~  202 (577)
T KOG1258|consen  137 FERAKSYVGLDFLS-D-----PLWDKYIEFENGQKSWKRVANIYERILEIPLH--------QLNRHFDRFKQLLNQNEEK  202 (577)
T ss_pred             HHHHHHhcccchhc-c-----HHHHHHHHHHhccccHHHHHHHHHHHHhhhhh--------HhHHHHHHHHHHHhcCChh
Confidence            88888775221111 1     12333334446677888888888888877211        11111111000111     


Q ss_pred             -hcCHHHHHHHHHHHHH---------------HH-HhcCCC-CCHHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHH
Q 004811          363 -ALQFSEAQKFCQMALD---------------IH-KDNGSP-ASLEEAAD-----RRLMGLICETKGDHEAALEHLVLAS  419 (729)
Q Consensus       363 -~g~~~~A~~~~~~al~---------------~~-~~~~~~-~~~~~a~~-----~~~lg~~~~~~g~~~~A~~~~~~al  419 (729)
                       ....+++...-.....               .. .....+ ........     ....-.++...-...+.+..++..+
T Consensus       203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I  282 (577)
T KOG1258|consen  203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI  282 (577)
T ss_pred             hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence             1122222222211111               00 000000 00111110     0011111222222233333333332


Q ss_pred             HH--HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          420 MT--MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (729)
Q Consensus       420 ~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (729)
                      ..  +...+..+.....|..........|+++...-.|++++--+        ......|...+......|+.+-|...+
T Consensus       283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~  354 (577)
T KOG1258|consen  283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVL  354 (577)
T ss_pred             cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence            11  11123344555667777778888999999999999998763        556678899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (729)
                      ..+.++..+.        ...+...-+.+....|+++.|...+++...-++..       ..+-..........|+.+.+
T Consensus       355 ~~~~~i~~k~--------~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~~~  419 (577)
T KOG1258|consen  355 ARACKIHVKK--------TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLEDA  419 (577)
T ss_pred             HhhhhhcCCC--------CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchhhh
Confidence            9998886542        23455566777788899999999999988776433       23333445566677888777


Q ss_pred             HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (729)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (729)
                      .. +......... +..+.......+...+... .-.++.+.|...+.+++++        .|+....+..+..+....+
T Consensus       420 ~~-~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  420 NY-KNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             hH-HHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence            75 2222222211 2222233444555555443 3467899999999999998        7777777777766665554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.15  E-value=0.48  Score=50.35  Aligned_cols=388  Identities=11%  Similarity=-0.027  Sum_probs=218.3

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM-QLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (729)
                      |.....|...|..-.++|..+.+...|++++.-.     +    .....|. .++.+....|+.+.-...|++|+.....
T Consensus        76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p----~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~  146 (577)
T KOG1258|consen   76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----P----LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL  146 (577)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----h----hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence            5556677888899999999999999999998764     1    1112222 2333444667777777788888776422


Q ss_pred             HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                           +-.....|-..-.....++++..-...|++.+++-......        ++..-.-+... +...-+-..++++.
T Consensus       147 -----dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~--------~f~~f~~~l~~-~~~~~l~~~d~~~~  212 (577)
T KOG1258|consen  147 -----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR--------HFDRFKQLLNQ-NEEKILLSIDELIQ  212 (577)
T ss_pred             -----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH--------HHHHHHHHHhc-CChhhhcCHHHHHH
Confidence                 12223344444444466778888888888888764322110        11100000000 00011111111111


Q ss_pred             HHHhCC------CChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811          421 TMIAND------QDAEVASVD-CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (729)
Q Consensus       421 ~~~~~~------~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (729)
                      +.....      ........+ ..+-.+-...+.++++...+.+...+                  .=.++...-...+.
T Consensus       213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k  274 (577)
T KOG1258|consen  213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK  274 (577)
T ss_pred             HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence            100000      000000000 00000000111122222222221111                  11223333444555


Q ss_pred             HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004811          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (729)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (729)
                      +..++..+...-... ....+.....|......-...|+++...-.|++++--+...       ...|...+......|+
T Consensus       275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~  346 (577)
T KOG1258|consen  275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD  346 (577)
T ss_pred             HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence            555665554322211 12233345567777777788999999999999998766544       4678888888888899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (729)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (729)
                      .+-|...+..+.++...    .   ...+...-+......|++..|...|++...-        -|....+-..-+....
T Consensus       347 ~~~~~~~~~~~~~i~~k----~---~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~  411 (577)
T KOG1258|consen  347 VSLANNVLARACKIHVK----K---TPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER  411 (577)
T ss_pred             hhHHHHHHHhhhhhcCC----C---CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence            99998888888776432    1   2234455567777889999999999998877        5777777777788888


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChhH-HHHHHHHHHH-HHHhCCHhHHHHHHHHHHHhhccc
Q 004811          654 AIGRLDDAIEILEFVVGIREEKLGTANPDV-DDEKRRLAEL-LKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~-~~~~~~La~~-~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++|+.+.+..+ ...+...  .-|..++.. ...+...++. +.-.++.+.|. ..+.++++..|.
T Consensus       412 r~~~~~~~~~~-~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~  473 (577)
T KOG1258|consen  412 RKGNLEDANYK-NELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPD  473 (577)
T ss_pred             HhcchhhhhHH-HHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCc
Confidence            99999988852 2222211  112233332 3334445544 45567888888 999999999887

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.11  E-value=0.00047  Score=43.22  Aligned_cols=34  Identities=29%  Similarity=0.553  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      +|++|+++        +|+...+|++||.+|...|++++|++
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            47899999        99999999999999999999999963

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.09  E-value=0.034  Score=49.39  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccch-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTG  334 (729)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  334 (729)
                      +...|......|+...++..+++++.+....+-+..+             ...+.++..++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3344556667788899999999998886432221110             123445677888899999999999999999


Q ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811          335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (729)
Q Consensus       335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (729)
                      +..        +|..-.++..+..+|...|+...|+..|++......+.
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e  129 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE  129 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            999        89999999999999999999999999999998877654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.52  Score=49.43  Aligned_cols=221  Identities=12%  Similarity=0.022  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004811          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (729)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (729)
                      .+..+..+...|+.+.|+..++.++....+      .-..-.++.+|.++..+.+|..|-..+....+...-..      
T Consensus       270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~------  337 (546)
T KOG3783|consen  270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH------  337 (546)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH------
Confidence            566788888888888999999988873222      23455778899999999999999999888776653221      


Q ss_pred             HHHHHHHHH-HHHH--------HhCCHHHHHHHHHHHHHHHHhCCC-ChhHHH----------------------HHHHH
Q 004811          391 EAADRRLMG-LICE--------TKGDHEAALEHLVLASMTMIANDQ-DAEVAS----------------------VDCSI  438 (729)
Q Consensus       391 ~a~~~~~lg-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~----------------------~~~~l  438 (729)
                       + .|..++ .++.        ..|+.+.|..+++....+....+. .|....                      -++.+
T Consensus       338 -a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El  415 (546)
T KOG3783|consen  338 -A-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL  415 (546)
T ss_pred             -H-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence             1 122222 2221        234666666666655544443211 111100                      01222


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (729)
                      +  |...|=-.-+.....++..-++...-.+..+...-+..+|.++..+|+...|..+|..+++.....  ..++...+.
T Consensus       416 ~--Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--~~d~w~~Pf  491 (546)
T KOG3783|consen  416 A--YFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--TEDLWAVPF  491 (546)
T ss_pred             H--HHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--ccccccccH
Confidence            2  222211111111111222211111111334455667788999999999999999999988653332  344556788


Q ss_pred             HHHHHHHHHHhcch-HHHHHHHHHHHHHHHHh
Q 004811          519 GLTDVSSIYESMNE-LEQAIKLLQKALKIYND  549 (729)
Q Consensus       519 ~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  549 (729)
                      +++.+|.+|..++. ..++..++.+|.+...+
T Consensus       492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  492 ALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            99999999999998 99999999999887643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.05  E-value=0.0082  Score=53.20  Aligned_cols=69  Identities=23%  Similarity=0.266  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----ChHHHHHH
Q 004811          599 FGVALNQMGLACVQRYS----------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG----RLDDAIEI  664 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~  664 (729)
                      .+..+++.|.++..+.+          +++|+.-|++|+.+        +|+...+++++|.+|..++    +..+|..+
T Consensus        24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~   95 (186)
T PF06552_consen   24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEY   95 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence            46677777777766533          44555556666666        8999999999999997765    44455555


Q ss_pred             HHHHHHHHHHH
Q 004811          665 LEFVVGIREEK  675 (729)
Q Consensus       665 ~~~al~~~~~~  675 (729)
                      |++|...+++.
T Consensus        96 F~kA~~~FqkA  106 (186)
T PF06552_consen   96 FEKATEYFQKA  106 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.02  E-value=0.0015  Score=41.07  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +.+++++|.++..+|++++|+ ..|+++++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEAL-EYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHH-HHHHHHHHHCcC
Confidence            357899999999999999999 999999999995

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.97  E-value=0.0093  Score=59.41  Aligned_cols=136  Identities=10%  Similarity=0.054  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      +|..+.....+.+..+.|..+|.+|+..     .   .....+|...|.+.+. .++.+.|...|+.+++.        .
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-----~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f   66 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD-----K---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F   66 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----C---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC-----C---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence            4566667777777799999999999631     1   1123567778888666 56666699999999998        5


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +.....+......+...|+.+.|..+|++++...     +........|......-...|+.+... ...+++.+..|+
T Consensus        67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~  139 (280)
T PF05843_consen   67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence            6666777788888999999999999999998642     111213567888888889999999888 888888888775

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.096  Score=50.51  Aligned_cols=138  Identities=19%  Similarity=0.109  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (729)
                      .....+..+..+...|+ +.+|...+..++...         ++...+...++.||...|+.+.|...+...-.-.    
T Consensus       133 ~~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----  198 (304)
T COG3118         133 EEEEALAEAKELIEAED-FGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----  198 (304)
T ss_pred             HHHHHHHHhhhhhhccc-hhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----
Confidence            33455677888899997 999999999999875         3335667789999999999999999998743322    


Q ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (729)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (729)
                       .......+.+...+..-....++..+.    ++.+..        +|+...+.+.+|..+...|+.+.|.+.+-..+..
T Consensus       199 -~~~~~~~l~a~i~ll~qaa~~~~~~~l----~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         199 -QDKAAHGLQAQIELLEQAAATPEIQDL----QRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             -hhhHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             111111111222222222333333322    222222        6889999999999999999999999998887776


Q ss_pred             HHhcC
Q 004811          380 HKDNG  384 (729)
Q Consensus       380 ~~~~~  384 (729)
                      .....
T Consensus       266 d~~~~  270 (304)
T COG3118         266 DRGFE  270 (304)
T ss_pred             ccccc
Confidence            55443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.90  E-value=0.0028  Score=39.83  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      +.+|..+|.++..+|++++|+.+|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999999

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.89  E-value=0.015  Score=58.04  Aligned_cols=136  Identities=12%  Similarity=0.085  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA  472 (729)
Q Consensus       394 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (729)
                      +|..+.....+.+..+.|...|.+|+.      .......+|...|.+.+. .++.+.|..+|+.+++.        .+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~   68 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence            466666777777789999999999852      233344677788888666 56666699999999998        466


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      ....|......+...++.+.|..+|++++.....      ......+|......-...|+.+....+.+++.+.++.
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            6778888889999999999999999999876322      2223557777778888889999999999999888765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.86  E-value=0.37  Score=51.19  Aligned_cols=52  Identities=10%  Similarity=0.059  Sum_probs=28.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      ..++...++|.+|..+.++-           +.....++...|..+....++++|.+.|.+|-
T Consensus       780 VqlHve~~~W~eAFalAe~h-----------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  780 VQLHVETQRWDEAFALAEKH-----------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             hhheeecccchHhHhhhhhC-----------ccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            44555566666665544432           22233455555666666666666666665543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.85  E-value=0.0025  Score=40.01  Aligned_cols=33  Identities=12%  Similarity=0.155  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +.+++.+|.++...|++++|+ ..|++++.++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~-~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAI-EYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCcC
Confidence            357899999999999999999 999999999995

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.75  E-value=0.034  Score=44.82  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=62.9

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          401 ICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (729)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (729)
                      .....|+|..|++.+.+............   ....++.++|.++...|++++|+..+++++.+.++..  |......++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al   84 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYAL   84 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHH
Confidence            34678999999999999988776665544   5667788999999999999999999999999998875  234444444


Q ss_pred             HHHHHH
Q 004811          478 VRLADM  483 (729)
Q Consensus       478 ~~la~~  483 (729)
                      ..+..+
T Consensus        85 ~~~~~l   90 (94)
T PF12862_consen   85 SWLANL   90 (94)
T ss_pred             HHHHHH
Confidence            444443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.72  E-value=0.0015  Score=40.87  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004811          330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (729)
Q Consensus       330 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (729)
                      +|++++++        +|....+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            37888988        89999999999999999999999863

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.68  E-value=0.037  Score=44.58  Aligned_cols=83  Identities=17%  Similarity=0.063  Sum_probs=68.2

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811          360 HVQALQFSEAQKFCQMALDIHKDNGSPA-SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (729)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (729)
                      ....|+|..|++.+.+.++......... ......++..+|.++...|++++|+..+++++.+.+..++......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4578999999999999999887776543 123456688899999999999999999999999999999888877777766


Q ss_pred             HHHH
Q 004811          439 GDTY  442 (729)
Q Consensus       439 a~~~  442 (729)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            6553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.66  E-value=0.0049  Score=39.28  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      ++.+||.+|..+|++++|+++|++++.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478999999999999999999999987754

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=1.2  Score=47.48  Aligned_cols=105  Identities=15%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccc
Q 004811          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (729)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (729)
                      ..+++.|...++..+ |..++++|...+..+...   .-+...+.....++.||..+.+.+.|.+++++|-+..     +
T Consensus       355 ~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~D---~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIISD---NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----R  425 (872)
T ss_pred             HHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccch---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----c
Confidence            456788888899986 999999999999876432   2225568888999999999999999999999998775     3


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (729)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  339 (729)
                      ..+..    .+.+-.+....|.-++|+.+.........
T Consensus       426 ~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  426 QSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             ccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            33322    44455666778889999998888776643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.64  E-value=0.0036  Score=39.26  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                      +.+++.+|.++...|++++|+.+|++++.+.|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            367899999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=1.5  Score=46.86  Aligned_cols=106  Identities=17%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 004811          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (729)
Q Consensus       266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (729)
                      ..+.+-|.-.++..+|..++++|...+....   .+............++.||..+.+.+.|.+++++|-+.        
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------  423 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------  423 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence            3455667888999999999999999987642   12222334666889999999999999999999999888        


Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                      +|...-....+-.+....+.-++|+.+..........
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            6666666677777777889999999998887766544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.50  E-value=0.0074  Score=38.43  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (729)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (729)
                      ++..||.+|...|+|++|+.+|++++.+.....
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            478899999999999999999999988776543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.46  E-value=2.6  Score=48.90  Aligned_cols=102  Identities=14%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcC-------ChHHHHHHHHHhcccchhhccc
Q 004811          229 RELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-------QYNEAIPVLEQSIEIPVIEEGQ  301 (729)
Q Consensus       229 ~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~  301 (729)
                      .+++.... |++|+..|++....++..      .+-..+.+.+|.....+-       .+.+|+.-|++.-.-      +
T Consensus       483 ~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  549 (932)
T PRK13184        483 DAFLAEKL-YDQALIFYRRIRESFPGR------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------V  549 (932)
T ss_pred             HHHHhhHH-HHHHHHHHHHHhhcCCCc------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------C
Confidence            33444443 666666666655544222      223456777777766532       355555555554322      3


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004811          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (729)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (729)
                      ..|..    |...|.+|..+|++++-+++|.-|++.+.+     +|.....
T Consensus       550 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  591 (932)
T PRK13184        550 GAPLE----YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRL  591 (932)
T ss_pred             CCchH----HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHH
Confidence            33333    888999999999999999999999998644     5665543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.27  E-value=0.0096  Score=37.30  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .+++.+|.+|...|++++|. ..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~-~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEAL-EYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            57899999999999999999 999999999984

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.35  Score=46.78  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (729)
                      -..-+.-....|++.+|...|..++...++.       ..+...++.+|...|+.+.|...+...-.-..       ...
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~  202 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA  202 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH
Confidence            3345556678899999999999999988766       35667899999999999999888765321110       000


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      ...+.....++.+.....+... +++.+..        +|+...+.+.||..|...|+.++|.+.+-..+..   -.|..
T Consensus       203 ~~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~  270 (304)
T COG3118         203 AHGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFE  270 (304)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccc
Confidence            1111111122222222222222 2223333        7888899999999999999999999887665543   22222


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                         ...+...|-.++...|..+.+.
T Consensus       271 ---d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         271 ---DGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             ---CcHHHHHHHHHHHhcCCCCHHH
Confidence               2334556666666666544444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.09  E-value=0.016  Score=36.30  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (729)
                      .+|+.+|.+|...|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999999999999987

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.06  E-value=0.86  Score=45.92  Aligned_cols=170  Identities=18%  Similarity=0.125  Sum_probs=116.7

Q ss_pred             HHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML----GQLENSLMCYTTGLEVQKQVLGETDP  347 (729)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  347 (729)
                      +......+++..|...+..+-...           .......++.+|..-    .+..+|..+|+.+.+.          
T Consensus        48 ~~~~~~~~~~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------  106 (292)
T COG0790          48 GAGSAYPPDYAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------  106 (292)
T ss_pred             cccccccccHHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------
Confidence            334456678888998888877632           113466777777653    4678899888854433          


Q ss_pred             hHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhC-------CHHHHHHHHH
Q 004811          348 RVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------DHEAALEHLV  416 (729)
Q Consensus       348 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------~~~~A~~~~~  416 (729)
                      ....+.+.||.+|..    ..++.+|..+|.++.+......       ..+...++.+|..-.       +...|+..|.
T Consensus       107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~  179 (292)
T COG0790         107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR  179 (292)
T ss_pred             ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence            456788889998887    4489999999999987642211       234677777776642       2336888887


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811          417 LASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG  488 (729)
Q Consensus       417 ~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  488 (729)
                      ++....        ...+...+|.+|..    ..++.+|..+|.++.+.        ..  ....+.++ ++...|
T Consensus       180 ~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         180 KAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence            775422        44567788877755    34899999999999886        22  67777888 666655

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.02  E-value=2.2  Score=43.85  Aligned_cols=140  Identities=13%  Similarity=0.084  Sum_probs=85.8

Q ss_pred             CChHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--SFKNAISK  587 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~  587 (729)
                      .+....+.-+..-|.-+...|. -++|+.+++.+++..+-..       .+ -+... .+-...|.+|+.  .+.+.+.+
T Consensus       373 iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~-------ec-~n~v~-~fvKq~Y~qaLs~~~~~rLlkL  443 (549)
T PF07079_consen  373 IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI-------EC-ENIVF-LFVKQAYKQALSMHAIPRLLKL  443 (549)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH-------HH-HHHHH-HHHHHHHHHHHhhhhHHHHHHH
Confidence            3455566667777888888887 7889999988887754331       11 11111 111122333322  22333332


Q ss_pred             ---HHHhCCCC-ChHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004811          588 ---LRAIGERK-SAFFGVALNQM--GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA  661 (729)
Q Consensus       588 ---~~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  661 (729)
                         ....+-.. .......-+.+  |..++.+|+|.++.-+-.-..++        .| ...++..+|.++....+|++|
T Consensus       444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA  514 (549)
T PF07079_consen  444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEA  514 (549)
T ss_pred             HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHH
Confidence               22222111 01112333444  45567899999999888887777        77 567999999999999999999


Q ss_pred             HHHHHHH
Q 004811          662 IEILEFV  668 (729)
Q Consensus       662 ~~~~~~a  668 (729)
                      ..++...
T Consensus       515 ~~~l~~L  521 (549)
T PF07079_consen  515 WEYLQKL  521 (549)
T ss_pred             HHHHHhC
Confidence            9998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.93  E-value=1.4  Score=44.41  Aligned_cols=166  Identities=18%  Similarity=0.160  Sum_probs=111.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (729)
                      ...+++..|...+.++-..       ..+   .....++.+|..    ..+..+|..+|..+.+.           ....
T Consensus        52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~  110 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAE  110 (292)
T ss_pred             cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHH
Confidence            3556677777777766552       112   556667777765    34678888888855443           2345


Q ss_pred             HHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 004811          519 GLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-------NYSDSYDSFKNAISK  587 (729)
Q Consensus       519 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~  587 (729)
                      +.+.||.+|..    ..++.+|..+|.++...-..     .. ......++.+|..-.       +...|...|.++...
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-----~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-----EA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL  184 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-----hH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence            67779998887    45899999999999876322     11 233566777776542       233677777777664


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811          588 LRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (729)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (729)
                      .          ...+...+|.+|..    ..++.+|..+|.++.+.        ..  ....+.++ ++...|
T Consensus       185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence            2          34677888877765    34899999999999886        22  56778888 666665

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.83  E-value=0.59  Score=48.23  Aligned_cols=171  Identities=13%  Similarity=0.044  Sum_probs=109.1

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHH
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA--DMYNRTGKLRESKSYCENALRIY  504 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~  504 (729)
                      ..|....++..++.++..+|+...|.+.+++|+-.++...   ++.......++.  .+...-..               
T Consensus        35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~---~~~F~~~~~~~~~g~~rL~~~~---------------   96 (360)
T PF04910_consen   35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF---HPSFSPFRSNLTSGNCRLDYRR---------------   96 (360)
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HHHhhhhhcccccCccccCCcc---------------
Confidence            4677788999999999999999999999999998876554   333222111111  11111100               


Q ss_pred             hcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (729)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (729)
                            ..+.....++......+.+.|-+..|+++.+-.+.+.+..  ++   ..++..+-....+.++|+--+..++..
T Consensus        97 ------~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~  165 (360)
T PF04910_consen   97 ------PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESP  165 (360)
T ss_pred             ------ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence                  1122345566667778888899999999998888886652  11   234445555666778887777776654


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHH
Q 004811          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSI---------------NEAVELFEEARSI  629 (729)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~  629 (729)
                      .......   .-...+...+.++.+++..++-               +.|...+++|+..
T Consensus       166 ~~~~~~~---~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  166 LAKCYRN---WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             hhhhhhh---hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence            4421100   0000123445667777777777               8999999999988

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.82  E-value=0.0091  Score=61.07  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=87.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 004811          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD  684 (729)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~  684 (729)
                      .-+.-.+.-+.|+.|+..|.+|+++        +|..+..+.+.+.++...+++..|+.-+.+++++        +|...
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~   72 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI   72 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence            3455566778899999999999999        9999988889999999999999999999999986        69999


Q ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .+|++-|......+++.+|+ ..|+....+.|+
T Consensus        73 K~Y~rrg~a~m~l~~~~~A~-~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   73 KAYVRRGTAVMALGEFKKAL-LDLEKVKKLAPN  104 (476)
T ss_pred             heeeeccHHHHhHHHHHHHH-HHHHHhhhcCcC
Confidence            99999999999999999999 999999999887

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=95.78  E-value=4.2  Score=45.13  Aligned_cols=435  Identities=11%  Similarity=-0.005  Sum_probs=205.6

Q ss_pred             ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH-HHcCChHHHHHHHH
Q 004811          211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY-CSLGQYNEAIPVLE  289 (729)
Q Consensus       211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~  289 (729)
                      .+....++........+...+...|+ +++-...-.++.+++    ...  |.++.-|.. ..++ ...++..++...|+
T Consensus       103 ~ee~ai~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~~~~~~----pl~--~~lWl~Wl~-d~~~mt~s~~~~~v~~~~e  174 (881)
T KOG0128|consen  103 EEELAINSYKYAQMVQLIGLLRKLGD-LEKLRQARLEMSEIA----PLP--PHLWLEWLK-DELSMTQSEERKEVEELFE  174 (881)
T ss_pred             HHHhcccccchHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc----CCC--hHHHHHHHH-HHHhhccCcchhHHHHHHH
Confidence            33444555566666777778888886 655444333333332    222  333333322 2222 23477888999999


Q ss_pred             HhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (729)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (729)
                      +++.-...   .......+......+..+...++++.-...|.+++...-..... .......+..+-..|...-..++-
T Consensus       175 kal~dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv  250 (881)
T KOG0128|consen  175 KALGDYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQV  250 (881)
T ss_pred             HHhccccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99865311   00001111112233334455677888889999998775433221 234455666666666666666777


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--H-HHHHhCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHc
Q 004811          370 QKFCQMALDIHKDNGSPASLEEAADRRLMG--L-ICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSL  445 (729)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg--~-~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~  445 (729)
                      +.++...+...-..     ......|....  . ......+++.|+..+.+.+..+... ...+.....|..+-......
T Consensus       251 ~a~~~~el~~~~D~-----~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~  325 (881)
T KOG0128|consen  251 IALFVRELKQPLDE-----DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS  325 (881)
T ss_pred             HHHHHHHHhccchh-----hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence            77777766654111     00111122221  1 1122334444444443333222111 11222233344444445555


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 004811          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS  524 (729)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  524 (729)
                      |+.-.-...+++++.-        .+.....|...+...-. ++-.+.+...+-+++..         .+.... +...+
T Consensus       326 G~p~ri~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~---------cp~tgd-L~~ra  387 (881)
T KOG0128|consen  326 GDPVRIQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS---------CPWTGD-LWKRA  387 (881)
T ss_pred             CCchHHHHHHHHHHHh--------ccccHHHHhhhhhhcccccccccccccccchhhcC---------CchHHH-HHHHH
Confidence            6655555555555443        12223333333322211 11122222222222222         111111 11111


Q ss_pred             HHHHhcch--HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004811          525 SIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY-------MLGNYSDSYDSFKNAISKLRAIGERK  595 (729)
Q Consensus       525 ~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~  595 (729)
                      .+.+..++  ...-...+.+++...-          . +++....|+       ...+++.-.+.|+.|...+.......
T Consensus       388 llAleR~re~~~vI~~~l~~~ls~~~----------~-l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~  456 (881)
T KOG0128|consen  388 LLALERNREEITVIVQNLEKDLSMTV----------E-LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQ  456 (881)
T ss_pred             HHHHHhcCcchhhHHHHHHHHHHHHH----------H-HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence            11111111  1111122222222100          0 111111111       12244455556666666655544432


Q ss_pred             ChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811          596 SAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       596 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (729)
                      .......+...|.++.. +++.+.|+.++...+..       ........|.....+-...|+...|..++++|+..   
T Consensus       457 ~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~---  526 (881)
T KOG0128|consen  457 LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ---  526 (881)
T ss_pred             hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc---
Confidence            22244556666666554 46778887777766554       12333336777777778889999999988888754   


Q ss_pred             HcCCCChh-HHHHHHHHHHHHHHhCCHhHHH
Q 004811          675 KLGTANPD-VDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       675 ~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~  704 (729)
                         ...|+ ...++..+-.+....|.++...
T Consensus       527 ---~~~~~~~~ev~~~~~r~Ere~gtl~~~~  554 (881)
T KOG0128|consen  527 ---VVDPEDALEVLEFFRRFEREYGTLESFD  554 (881)
T ss_pred             ---CcCchhHHHHHHHHHHHHhccccHHHHh
Confidence               33444 4556666666777777777766

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.72  E-value=0.018  Score=35.62  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++++.+|.++...|++++|+ ..|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence            46889999999999999999 999999999985

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=3.1  Score=42.46  Aligned_cols=194  Identities=14%  Similarity=0.104  Sum_probs=137.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      -.......+..+.++....++..|...+.+.+-...+   +........++..++.++.+-+..-.+..+.-.++.....
T Consensus       269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            4455667778999999999999999999998776655   4456667788888888888888777777777777776655


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-----FGVALNQMGLACVQRYSINEAVELFE  624 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~  624 (729)
                      . ..+...+..-..++..+...|-.+.|+..+..++...-..+.-....     .+.++..-+..+ ...+.+.+.++++
T Consensus       346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~  423 (482)
T KOG4322|consen  346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD  423 (482)
T ss_pred             h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence            4 33444445556788999999999999999999988765443322110     011111111112 4456788888999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHH
Q 004811          625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD---DAIEILEFVVG  670 (729)
Q Consensus       625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~  670 (729)
                      +|-.++.+..-  +....++.+.+|..|-..|+.+   ++...|+++..
T Consensus       424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            99888887654  6678889999999999999865   44445555543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.58  E-value=0.017  Score=59.18  Aligned_cols=109  Identities=18%  Similarity=0.170  Sum_probs=91.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004811          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (729)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  641 (729)
                      -.-+.-.+..++|+.|+..|.+|+++        .+..+..+.+.+.++.+.+++..|+.-+.+|++.        +|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            34567778889999999999999997        2335667778889999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (729)
                      ..+|+.-|.++...+++.+|...|+....+        .|+...+...+..+-
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECN  116 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHH
Confidence            999999999999999999999999998876        466666666665553

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=95.54  E-value=2.4  Score=40.79  Aligned_cols=185  Identities=17%  Similarity=0.168  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCCC
Q 004811          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQS  555 (729)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  555 (729)
                      +..+|.+....|+|++.+.++++++......        ...-.+.+..+|-. .|....+...+.......... +...
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL--------t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~   74 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL--------TEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK   74 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence            5678999999999999999999999882221        12223334444422 344445555554444433322 1111


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE---RKSAFFGVALNQMGLACVQR-----Y-----SINEAVEL  622 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  622 (729)
                      ..     .+..-|.. .=-++=......++.+.....-   .........+-..|..|.-.     |     -.+.|...
T Consensus        75 ~~-----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a  148 (236)
T PF00244_consen   75 QV-----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA  148 (236)
T ss_dssp             HH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence            11     11111110 0012223344455555443211   11111222333345544321     1     24789999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHc
Q 004811          623 FEEARSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      |++|+.+......+.+|-......+.+..| .-+|+.++|+.+.++++.-....+
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l  203 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL  203 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence            999999999988889999998888888777 458999999999999987765444

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=4  Score=43.13  Aligned_cols=248  Identities=12%  Similarity=-0.073  Sum_probs=140.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      |..+......+.++...|+.+.|+..+..++....      ..-....++.+|.++..+.+|..|-..+.......    
T Consensus       264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des----  333 (546)
T KOG3783|consen  264 PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES----  333 (546)
T ss_pred             CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh----
Confidence            33444556678888888998888998888887321      23345678899999999999999999988877762    


Q ss_pred             CCCChHHHHHHHHHHH-HHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          509 PGVPPEEIASGLTDVS-SIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (729)
Q Consensus       509 ~~~~~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (729)
                           ...-..|..++ .++..        .|+-+.|..+++....+....+...+.- .....-+.-+...+. -.+..
T Consensus       334 -----dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E-~f~~RKverf~~~~~-~~~~~  406 (546)
T KOG3783|consen  334 -----DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE-KFIVRKVERFVKRGP-LNASI  406 (546)
T ss_pred             -----hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh-HHHHHHHHHHhcccc-ccccc
Confidence                 11122233333 33332        3355566666666555554432111111 111111111111111 00000


Q ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (729)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  657 (729)
                                   .     .+.-+..++.++.  ......+..    ++........-.+..+..--+..+|.++..+|+
T Consensus       407 -------------~-----la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~  464 (546)
T KOG3783|consen  407 -------------L-----LASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD  464 (546)
T ss_pred             -------------c-----ccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC
Confidence                         0     0001111221111  111222222    221111111111223334466788999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHhhccc
Q 004811          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR-VRSRKAQSLETLLDANSR  717 (729)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~-~~~A~~~~l~~al~~~p~  717 (729)
                      ...|..+|..+++- +.....++--.+.+++.||.+|...|. ..++. +++.+|-+...+
T Consensus       465 ~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~-~~L~kAr~~~~d  523 (546)
T KOG3783|consen  465 SEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEAR-ALLLKAREYASD  523 (546)
T ss_pred             HHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHH-HHHHHHHhhccc
Confidence            99999999998865 222234444567899999999999999 99999 999999877654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.33  E-value=4  Score=41.94  Aligned_cols=437  Identities=9%  Similarity=-0.033  Sum_probs=216.3

Q ss_pred             cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (729)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  289 (729)
                      +.+...++|.+...|+.+...+-.++. +++-.+.|++...-+         |-...+|...-.--....+|.....+|.
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~pf---------p~~~~aw~ly~s~ELA~~df~svE~lf~  100 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQES-MDAEREMYEQLSSPF---------PIMEHAWRLYMSGELARKDFRSVESLFG  100 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCCC---------ccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence            344567899999999999998888886 888888877765432         3223333322222233477888888888


Q ss_pred             HhcccchhhccccchHHHHHHHHHHHHHHHHcCC-H--HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH-----
Q 004811          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ-L--ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-----  361 (729)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----  361 (729)
                      +++.-.-          .+..|... .-|.+.-+ .  .++....-+|.+..-...+ -+|.....|...+..+.     
T Consensus       101 rCL~k~l----------~ldLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~  168 (660)
T COG5107         101 RCLKKSL----------NLDLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEEL  168 (660)
T ss_pred             HHHhhhc----------cHhHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhcccc
Confidence            8876431          11112211 11222111 0  0333333344333222111 13444444544444332     


Q ss_pred             ----HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------HHHHHHhC----CHHHHHHHHHHHHHHHHh
Q 004811          362 ----QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM---------GLICETKG----DHEAALEHLVLASMTMIA  424 (729)
Q Consensus       362 ----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l---------g~~~~~~g----~~~~A~~~~~~al~~~~~  424 (729)
                          .+.+.+.-...|.+++..--.+..       ..|...         ...-.-.|    -|-.|...|++...+...
T Consensus       169 ~kwEeQqrid~iR~~Y~ral~tP~~nle-------klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G  241 (660)
T COG5107         169 GKWEEQQRIDKIRNGYMRALQTPMGNLE-------KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG  241 (660)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCccccHH-------HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc
Confidence                334455566666666643211110       011110         11111111    244555555554433221


Q ss_pred             CCC-ChhHHHHHH---------HHHHHHHH-------cCC-HHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          425 NDQ-DAEVASVDC---------SIGDTYLS-------LSR-YDEAG-FAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (729)
Q Consensus       425 ~~~-~~~~~~~~~---------~la~~~~~-------~g~-~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (729)
                      ... .+.....+.         .+-.+-..       .|+ ..+-+ -.+++++..        -+....+|+.....+.
T Consensus       242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--------~~~~~evw~dys~Y~~  313 (660)
T COG5107         242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--------FYYAEEVWFDYSEYLI  313 (660)
T ss_pred             ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHh
Confidence            110 111111111         11111111       112 12211 234555554        4666778888888888


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC------------CC
Q 004811          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP------------GQ  553 (729)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~  553 (729)
                      ..++-+.|+...++++...         |.   ....++.+|...++-+.-..+|+++.+......            ++
T Consensus       314 ~isd~q~al~tv~rg~~~s---------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N  381 (660)
T COG5107         314 GISDKQKALKTVERGIEMS---------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNN  381 (660)
T ss_pred             hccHHHHHHHHHHhcccCC---------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCC
Confidence            8888888888877776652         11   344566666666666555556665554332110            01


Q ss_pred             CC-----------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          554 QS-----------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL  622 (729)
Q Consensus       554 ~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  622 (729)
                      ..           .+..+++.+-..-.+..-.+.|...|-++-+.    +-..+.  ..++..+ .-+...|++.-|...
T Consensus       382 ~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~----~~~~h~--vyi~~A~-~E~~~~~d~~ta~~i  454 (660)
T COG5107         382 FEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE----GIVGHH--VYIYCAF-IEYYATGDRATAYNI  454 (660)
T ss_pred             ccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc----CCCCcc--eeeeHHH-HHHHhcCCcchHHHH
Confidence            10           01111222222223333455556666555432    211111  1111211 224567899999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811          623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (729)
Q Consensus       623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (729)
                      |+-.+..        .|+........-..+...++-+.|..+|+.++...+.      ...-..|..+...-..-|+...
T Consensus       455 felGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~iy~kmi~YEs~~G~lN~  520 (660)
T COG5107         455 FELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKRIYDKMIEYESMVGSLNN  520 (660)
T ss_pred             HHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHhhcchHH
Confidence            9998887        5665544455556677889999999999988865432      1223444455555555666666


Q ss_pred             HHHHHHHHHHhhccc
Q 004811          703 RKAQSLETLLDANSR  717 (729)
Q Consensus       703 A~~~~l~~al~~~p~  717 (729)
                      +. ..=+....+.|+
T Consensus       521 v~-sLe~rf~e~~pQ  534 (660)
T COG5107         521 VY-SLEERFRELVPQ  534 (660)
T ss_pred             HH-hHHHHHHHHcCc
Confidence            65 444455555554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.33  E-value=0.85  Score=47.08  Aligned_cols=162  Identities=15%  Similarity=0.006  Sum_probs=117.3

Q ss_pred             cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----c-----C---C--------CCCHhHHHHHH
Q 004811          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIG----A-----N---G--------KPSLELVMCLH  269 (729)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~----~-----~---~--------~~~~~~~~~~~  269 (729)
                      +......+|-....+++++.++..+|+ +..|.++.++|+-.++..    .     .   +        ..+.....+++
T Consensus        29 l~~ll~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~  107 (360)
T PF04910_consen   29 LINLLQKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF  107 (360)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence            344557889999999999999999997 999999999999887743    1     0   0        11244566777


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhhcccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (729)
                      .....+.+.|-+..|.++.+-.+.++     +. +|..   +++.+-....+.++|+--+..++.......+.   .-..
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~  176 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSL  176 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhh
Confidence            88888899999999999999999986     33 4432   35555566667788877777777655421100   0001


Q ss_pred             HHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHHhc
Q 004811          349 VGETCRYLAEAHVQALQF---------------SEAQKFCQMALDIHKDN  383 (729)
Q Consensus       349 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~  383 (729)
                      .+...+.++.+++..++-               +.|...+.+|+...|..
T Consensus       177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            224566777788888887               89999999999988754

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.33  E-value=0.0061  Score=59.33  Aligned_cols=92  Identities=18%  Similarity=0.247  Sum_probs=83.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004811          609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR  688 (729)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~  688 (729)
                      -.+..|.+++|++.|..++++        +|..+..+...+.++..+++...|+.-+..++.+        +|+.+.-+-
T Consensus       123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk  186 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK  186 (377)
T ss_pred             HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence            345578899999999999999        9999999999999999999999999999999987        788888888


Q ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          689 RLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .-+.....+|++++|. +.|+.+.+++-+
T Consensus       187 frg~A~rllg~~e~aa-~dl~~a~kld~d  214 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAA-HDLALACKLDYD  214 (377)
T ss_pred             hhhHHHHHhhchHHHH-HHHHHHHhcccc
Confidence            8899999999999999 999999988765

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.14  E-value=3.5  Score=40.19  Aligned_cols=93  Identities=13%  Similarity=-0.059  Sum_probs=75.1

Q ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004811          364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL  443 (729)
Q Consensus       364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  443 (729)
                      ..-...++++.+|+..+......  .....+...+|..|+..|++++|+.+|+.+...+...+-......++..+..|+.
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~  229 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK  229 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            34456788888888888766542  3345567789999999999999999999998888877777778888899999999


Q ss_pred             HcCCHHHHHHHHHHH
Q 004811          444 SLSRYDEAGFAYQKA  458 (729)
Q Consensus       444 ~~g~~~~A~~~~~~a  458 (729)
                      ..|+.+..+.+.-+.
T Consensus       230 ~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  230 RLGDVEDYLTTSLEL  244 (247)
T ss_pred             HhCCHHHHHHHHHHH
Confidence            999998887765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.08  E-value=2.8  Score=42.72  Aligned_cols=148  Identities=8%  Similarity=-0.002  Sum_probs=100.2

Q ss_pred             CCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004811          426 DQDAEVASVDCSIGDTYLSLSR------------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (729)
                      ..+|....+|..+....-..-.            .+.-+.+|++|++.        +|.....+..+-.+..+..+.++.
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3466666677666655443322            34456677777776        667777777777777788888888


Q ss_pred             HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-----------CcHHHHHH
Q 004811          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----------STVAGIEA  562 (729)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~  562 (729)
                      ...+++++...      ...+.+...|...-......-.+......|.+++..........           ..+..++.
T Consensus        85 ~~~we~~l~~~------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~  158 (321)
T PF08424_consen   85 AKKWEELLFKN------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL  158 (321)
T ss_pred             HHHHHHHHHHC------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            88888888872      22334444444433333444568889999999988877543321           24556677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          563 QMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                      .+.......|..+.|+..++-.+++
T Consensus       159 r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  159 RLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHCCchHHHHHHHHHHHHH
Confidence            8888889999999999999988886

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.03  E-value=0.034  Score=34.39  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                      ++++.+|.++...|++++|+..|+++++.+|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            46889999999999999999999999988764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.99  E-value=0.013  Score=57.19  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (729)
                      +.-.+..|.++.|++.|..++.+        +|..+..+...+.++..+++...|+..|..++.+         +++.+.
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---------n~Dsa~  183 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---------NPDSAK  183 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc---------Cccccc
Confidence            34455678899999999999998        8999999999999999999999999999999998         566677


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          519 GLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                      .|-..+.....+|+|.+|..++..+.++.
T Consensus       184 ~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  184 GYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             ccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            78888899999999999999999988764

>PRK14707 hypothetical protein; Provisional

Probab=94.95  E-value=6.9  Score=48.24  Aligned_cols=367  Identities=9%  Similarity=0.001  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004811          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (729)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (729)
                      -..+++++..+.+|.++..+-..+..+...+..+  +....+  -..++.++--+++|.+...+-.-++.+.........
T Consensus       834 AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e--~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~  911 (2710)
T PRK14707        834 VQHVATVLNAMSKWPDNAVCAAAAGAMAERLADE--PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPE  911 (2710)
T ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC--hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHH
Confidence            3467888888888887777776666665544322  222222  234566666677777766666666666555443322


Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811          389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (729)
Q Consensus       389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (729)
                      ...+..-..++.++..+.++.++-.+-.-+..+......++.....+  ..++.++-.+++|.+.-.+-.-+..+...+.
T Consensus       912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~  991 (2710)
T PRK14707        912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV  991 (2710)
T ss_pred             HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh
Confidence            32333344566666666666654443333334444444444333332  3466777777888776666555555554432


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI--ASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                      .+..-.....-..+++++..+.+|.++-.+-.-+..+...+. .  .+..  ..--..++.++....+|.+.-.+-.-+.
T Consensus       992 ~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa-~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~ 1068 (2710)
T PRK14707        992 DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS-N--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAAS 1068 (2710)
T ss_pred             ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-c--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHH
Confidence            111111222334667777777777766655555555554431 1  1111  1122345556666666554433333333


Q ss_pred             HHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          545 KIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (729)
Q Consensus       545 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  623 (729)
                      .+......... ..+..-..++.++...-+|.+.-.+-.-++.+...++.........-...++.+.-...+|...-.+=
T Consensus      1069 aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr 1148 (2710)
T PRK14707       1069 ALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACE 1148 (2710)
T ss_pred             HHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHH
Confidence            33332211111 00111234566677777777777777777777777655443333333334444444443433322222


Q ss_pred             HHHHHHHHHhcCCCChhHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 004811          624 EEARSILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD  684 (729)
Q Consensus       624 ~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~  684 (729)
                      .-+..+..++..  +++...  .-..++..+-...+|.+.-.+-+-++.+....-...+|...
T Consensus      1149 ~Aa~~LA~RL~~--d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~ 1209 (2710)
T PRK14707       1149 SAIDVLAATLAN--APGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQ 1209 (2710)
T ss_pred             HHHHHHHHHhcc--chhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchh
Confidence            222333333222  222221  12355666666667766666666666666555555555443

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.93  E-value=5.1  Score=40.99  Aligned_cols=199  Identities=12%  Similarity=-0.017  Sum_probs=139.5

Q ss_pred             ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                      +-.......+..+.++....++..|..++.+..-.+... ........++..++.++.+.+..-.+..+.-.++....+.
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~-~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey  346 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG-CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY  346 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence            344456778889999999999999999999877655433 2233456677788888888888778877777777766554


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH------HHcCChHHHHHHH
Q 004811          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY------DAIGRLDDAIEIL  665 (729)
Q Consensus       592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~  665 (729)
                      ..+  ...+..-..++..+..+|..+.|+..+..++....-..+-+  +...+++-.++|+      ....+.+.+..++
T Consensus       347 ~ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~--drara~fvfanC~lA~a~s~~~e~ld~~~~~L  422 (482)
T KOG4322|consen  347 SLD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD--DRARAIFVFANCTLAFALSCANESLDGFPRYL  422 (482)
T ss_pred             ccc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh--hcceeEEEEEeeeecchhhhhhhhHHhhHHHH
Confidence            333  22345566788888899999999999999998766544422  1122222222222      2455778888888


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHH--HHHHHHHhhccc
Q 004811          666 EFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA--QSLETLLDANSR  717 (729)
Q Consensus       666 ~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~--~~l~~al~~~p~  717 (729)
                      +++-.++.++  ..|....++.+-+|..|...|+.++-..  ..|++++.--|.
T Consensus       423 ~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~  474 (482)
T KOG4322|consen  423 DLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL  474 (482)
T ss_pred             HHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC
Confidence            8888887765  5577789999999999999999875430  466776665543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.86  E-value=4.1  Score=39.96  Aligned_cols=205  Identities=14%  Similarity=0.154  Sum_probs=103.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAG  559 (729)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~  559 (729)
                      +..+.+.|++.-|..+..-.++.+.+.....+    .....+++.+......-+ +-..+..++++.. ...+.......
T Consensus        17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~----~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~   91 (260)
T PF04190_consen   17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVD----EESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPE   91 (260)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHTT---S----HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HH
T ss_pred             HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHH
Confidence            34445555555555555555555544211111    122344555555443222 3456667777777 44344456678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNA-----------ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (729)
                      .+..+|..|.+.|++.+|..+|-..           +..+...+....  ...........|...++...|...+...++
T Consensus        92 LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e--~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~  169 (260)
T PF04190_consen   92 LHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE--ADLFIARAVLQYLCLGNLRDANELFDTFTS  169 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            8889999999999999999887422           111112222221  223333344556677888888888877776


Q ss_pred             HHHHhcCC-------CChhHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          629 ILEQECGP-------YHPDTLGVYSNLAGTY---DAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       629 ~~~~~~~~-------~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                      .+... .|       ..|.... +.+....+   .+.+    +...|....+.+...+. .+|.....+..+|.+|+...
T Consensus       170 ~~~~~-~p~~~~~~~~~~~~~P-llnF~~lLl~t~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  170 KLIES-HPKLENSDIEYPPSYP-LLNFLQLLLLTCERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHH----EEEEEEEEESS-H-HHHHHHHHHHHHHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---
T ss_pred             HHhcc-CcchhccccCCCCCCc-hHHHHHHHHHHHhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCC
Confidence            64332 11       0111111 23333333   3333    34667766666655443 24667777888888887654


Q ss_pred             C
Q 004811          699 R  699 (729)
Q Consensus       699 ~  699 (729)
                      .
T Consensus       243 ~  243 (260)
T PF04190_consen  243 P  243 (260)
T ss_dssp             S
T ss_pred             C
Confidence            3

; PDB: 3LKU_E 2WPV_G.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.76  E-value=4.4  Score=39.47  Aligned_cols=187  Identities=14%  Similarity=0.031  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC---CC-------HHHHHHHHHHHHHHHHhC--------------C
Q 004811          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP---AS-------LEEAADRRLMGLICETKG--------------D  407 (729)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~a~~~~~lg~~~~~~g--------------~  407 (729)
                      +.+.+..+++..|+...|+.-+++=+....+..+.   ..       ...+.-+..+|.+.....              -
T Consensus        12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y   91 (247)
T PF11817_consen   12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY   91 (247)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence            34556688888999999999888877776555433   01       223344445555554332              1


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCh----------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          408 HEAALEHLVLASMTMIANDQDA----------------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (729)
Q Consensus       408 ~~~A~~~~~~al~~~~~~~~~~----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (729)
                      |..|-.+...-...+......|                      .....+................++.+.+|+..++..
T Consensus        92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~  171 (247)
T PF11817_consen   92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY  171 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence            2233332222222222221000                      000111111111112234456788888998888776


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (729)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (729)
                      ..  ......+...+|..|+..|++++|+.+|+.+...+++.   .-..-...++..+..++...|+.+..+.+.-+.
T Consensus       172 ~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  172 GQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             cc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            52  45556677899999999999999999999998888762   234455677888889999999988877665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=5.4  Score=40.46  Aligned_cols=141  Identities=11%  Similarity=0.026  Sum_probs=91.3

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          403 ETKGDHEAALEHLVLASMTMIANDQ---DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (729)
Q Consensus       403 ~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (729)
                      +...++.+|...-...+.-....+.   +...+.+|+.+..+|...|+...-...+...+...  ..+.+....+...+.
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~  214 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL  214 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence            3445666666655544322211111   23346677888888888888766666665554442  223345556677777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      |-+.|...+.|+.|.....+..--  .   .......+..++.+|.+..-+++|..|.+++-+|+...|..
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~~p--e---~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  215 LLRNYLHNKLYDQADKLVSKSVYP--E---AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHhhhHHHHHHHHHhhcccCc--c---ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            888888888888887766554311  0   11233567788889999999999999999999999887753

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=2  Score=41.33  Aligned_cols=136  Identities=14%  Similarity=0.094  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (729)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (729)
                      .-++-++-+.+.++-....+-......++.++|..|.+.++.+.+.+++.+.+.-....+-  ..+...+-..||.+|..
T Consensus        90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~--KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL--KIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc--chhhHHHHHHHHHhhcc
Confidence            3444555565555544444445667889999999999999999999999988876544432  33444555666766655


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      +.-.++.++.....++.      |.+....-..-...|.......++.+|-.++-.++..+...
T Consensus       168 ~~vV~e~lE~~~~~iEk------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~  225 (412)
T COG5187         168 RKVVEESLEVADDIIEK------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS  225 (412)
T ss_pred             HHHHHHHHHHHHHHHHh------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence            54445544444444443      55555544444556667777788888888888777665443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.72  E-value=7.5  Score=41.87  Aligned_cols=182  Identities=11%  Similarity=0.022  Sum_probs=92.2

Q ss_pred             HHHHHHHhcCHHHHHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          356 LAEAHVQALQFSEAQKFCQM------ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      +|..+..+|+|.+|.++|.+      |++++.+.          -.+.++.-+...|..++-....++-.........+.
T Consensus       638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl----------RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk  707 (1081)
T KOG1538|consen  638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL----------RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK  707 (1081)
T ss_pred             HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence            44555555666666655543      23332221          133444445555555444444433322222222211


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                             .-|.++...|+.++|+...      +-++++.+++    +......+..++..+.....+.-|-+.|.+.-..
T Consensus       708 -------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~  776 (1081)
T KOG1538|consen  708 -------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL  776 (1081)
T ss_pred             -------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence                   1244555667766666542      3344443333    2333344555566566666666666555543222


Q ss_pred             HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                                       -.+..++...++|++|..+.++--+..          ..+|+-.|..+....+|++|.+.|.+
T Consensus       777 -----------------ksiVqlHve~~~W~eAFalAe~hPe~~----------~dVy~pyaqwLAE~DrFeEAqkAfhk  829 (1081)
T KOG1538|consen  777 -----------------KSLVQLHVETQRWDEAFALAEKHPEFK----------DDVYMPYAQWLAENDRFEEAQKAFHK  829 (1081)
T ss_pred             -----------------HHHhhheeecccchHhHhhhhhCcccc----------ccccchHHHHhhhhhhHHHHHHHHHH
Confidence                             234456667788888766555432222          23455667777777788888777766


Q ss_pred             HH
Q 004811          584 AI  585 (729)
Q Consensus       584 al  585 (729)
                      |-
T Consensus       830 AG  831 (1081)
T KOG1538|consen  830 AG  831 (1081)
T ss_pred             hc
Confidence            53

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=5.7  Score=40.32  Aligned_cols=141  Identities=16%  Similarity=0.111  Sum_probs=93.1

Q ss_pred             HHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (729)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (729)
                      +...++.+|..+-+..+.-........-......+|+.+..+|...|+...-...+...+...  .++.+....+.....
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~  214 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL  214 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence            345778888777666553211111111113345568888889999999777666666555442  233344455666677


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004811          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (729)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  422 (729)
                      |-..|...+.|+.|..+..+..  +|...  .....+..++.+|.+..-+++|..|.+++.+|+...
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  215 LLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            7888888899999988876653  12221  223567888999999999999999999999887643

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.67  E-value=3.8  Score=43.49  Aligned_cols=178  Identities=11%  Similarity=0.026  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHH
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-------EQAIKLLQKALKIY  547 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  547 (729)
                      .....||++++..++|+-|...|+.+..-+..   .......+.+.-..|.++...+..       ++...+++.|+..+
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~---Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y  285 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN---DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY  285 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh---chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence            45567899999999999999999999887754   222333445555555555555532       46777888888877


Q ss_pred             HhC----CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhCCCCChHHHHHHHHHHHHH--HHcCCHHHH
Q 004811          548 NDA----PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL--RAIGERKSAFFGVALNQMGLAC--VQRYSINEA  619 (729)
Q Consensus       548 ~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A  619 (729)
                      ...    .........+....+.++...|.+.+|...+-+.....  ..+..   ...+..+..+|.+|  ........-
T Consensus       286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~---~~~alllE~~a~~~~~~~~~~~~~~  362 (414)
T PF12739_consen  286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP---FGSALLLEQAAYCYASLRSNRPSPG  362 (414)
T ss_pred             HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh---HhhHHHHHHHHHhhcccccCCCCcc
Confidence            772    12222334556677888888999888877776665542  11110   11344455555555  111000000


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      ..-               ....+--+..-|.-|...|+...|+.+|.+++.++.
T Consensus       363 ~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  363 LTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             chh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence            000               011122233446778999999999999999998874

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.57  E-value=0.2  Score=37.79  Aligned_cols=68  Identities=18%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  295 (729)
                      +...+..|..+|...+ .++|+..+.+|++...      ..++...++-.+..+|+..|+|.+.+.+..+-+++.
T Consensus         6 ak~~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A   73 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNE-TQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA   73 (80)
T ss_pred             HHHHHHHHHHHhccch-HHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778888898886 8999999999998652      236678888889999999999999999887766664

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.50  E-value=6.2  Score=41.89  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHH
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH-------EAALEHLVLASMTMI  423 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~  423 (729)
                      .....||+.++..++|+.|...|+.+.+-+....  .....+.++...|.+....+..       +....+++.|+..+.
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~  286 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL  286 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence            4567899999999999999999999887664433  2233455666666666666643       366667777766555


Q ss_pred             hC-----CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHcCCHHHH
Q 004811          424 AN-----DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA---VASVFVRLADMY--NRTGKLRES  493 (729)
Q Consensus       424 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A  493 (729)
                      ..     ........+....+.++...|.+.+|...+-+.....-.    ....   .+..+-.+|.+|  ........-
T Consensus       287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~  362 (414)
T PF12739_consen  287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPG  362 (414)
T ss_pred             hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCcc
Confidence            52     222344556667778888889988887776666554210    0122   445555556655  111000000


Q ss_pred             HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                                      +......+.-+..-|.-|...|+...|+.+|.+++..+...
T Consensus       363 ----------------~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~  403 (414)
T PF12739_consen  363 ----------------LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK  403 (414)
T ss_pred             ----------------chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence                            00012234445556778899999999999999999998744

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PRK14707 hypothetical protein; Provisional

Probab=94.49  E-value=11  Score=46.61  Aligned_cols=384  Identities=10%  Similarity=0.025  Sum_probs=190.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004811          313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (729)
Q Consensus       313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (729)
                      .+++++..+.+|.+...+-.-+..+...+..  ++.....  -..++.++--..+|.+...+-.-+..+...........
T Consensus       752 evANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr  829 (2710)
T PRK14707        752 QVATALNALSKWPDNQACAAAANTLAERQLR--EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLR  829 (2710)
T ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHH
Confidence            4555555555554444444333333333221  1222111  13344444445555554444444444443332221121


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (729)
Q Consensus       391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (729)
                      .+..-..++.++..+.++..+..+-..+..+.......+.....+  ..++.++-.+++|.+...+-.-++.+...+..+
T Consensus       830 ~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d  909 (2710)
T PRK14707        830 EAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADE  909 (2710)
T ss_pred             HhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC
Confidence            222234566666666777665555554544444444444333322  345667777778777666666666666655422


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (729)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (729)
                      ..-.....-..++.++..+.+|.++-.+-.-+..+...+. .+..-.....-..++.++-...+|.+.-.+-.-+..+..
T Consensus       910 ~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa-~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~  988 (2710)
T PRK14707        910 PELRKALSAHRVATALNALSKWPDIPVCATAASALAERLS-DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAE  988 (2710)
T ss_pred             HHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc-cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            1222223345677777777877776555555555544431 111111122233456666666776665555554444444


Q ss_pred             hCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          549 DAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       549 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      ....... .....-..++.++....+|.++-.+-.-+..+...+........+.--..++.++-.+.+|.+.-.+-.-+.
T Consensus       989 rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~ 1068 (2710)
T PRK14707        989 RLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAAS 1068 (2710)
T ss_pred             HHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHH
Confidence            3311111 001112356777777777776666666666665555333211112223345555555666655444444444


Q ss_pred             HHHHHhcCCCChhHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHh
Q 004811          628 SILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR  701 (729)
Q Consensus       628 ~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~  701 (729)
                      .+...+..  ++....  .-..++.++...-+|.+.-.+-+.++.+...+....++........++.++....++.
T Consensus      1069 aLA~rL~~--d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp 1142 (2710)
T PRK14707       1069 ALAERLSD--DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWP 1142 (2710)
T ss_pred             HHHHHhhc--cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCC
Confidence            44433322  222222  2245677777777787777777777777776655555544444445555555544443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.48  E-value=0.2  Score=39.71  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                      +..+++.+..        +|+...+.+.+|..+...|++++|++.+-.++..-.      ......+...|-.++...|.
T Consensus         8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr------~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR------DYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T------TCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------cccccHHHHHHHHHHHHcCC
Confidence            4556677776        899999999999999999999999999888775311      11123445555555555665


Q ss_pred             HhHHH
Q 004811          700 VRSRK  704 (729)
Q Consensus       700 ~~~A~  704 (729)
                      -+.-.
T Consensus        74 ~~plv   78 (90)
T PF14561_consen   74 GDPLV   78 (90)
T ss_dssp             T-HHH
T ss_pred             CChHH
Confidence            44333

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.42  E-value=3.6  Score=41.92  Aligned_cols=147  Identities=14%  Similarity=0.063  Sum_probs=94.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004811          470 HPAVASVFVRLADMYNRTGK------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (729)
                      +|....+|..+....-..-.            .+.-+.+|++|++.         +|.....+..+-.+.....+.++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            78888888888877655433            34556777788777         2222333444444445556667777


Q ss_pred             HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------ChHHHHHHHHHH
Q 004811          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----------SAFFGVALNQMG  607 (729)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la  607 (729)
                      ..+++++...+..    ..+-..|...-......-.+......|.+++..+.......          ......++..+.
T Consensus        86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~  161 (321)
T PF08424_consen   86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC  161 (321)
T ss_pred             HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence            7777777765443    11112222222222334468899999999998877654332          223455677778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Q 004811          608 LACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      ....+.|-.+.|+..++..+++
T Consensus       162 ~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  162 RFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHCCchHHHHHHHHHHHHH
Confidence            8888999999999999999987

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.42  E-value=0.11  Score=33.16  Aligned_cols=36  Identities=31%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      .++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            478899999999999999999999999999887643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=5.7  Score=39.09  Aligned_cols=132  Identities=17%  Similarity=0.158  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004811          325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET  404 (729)
Q Consensus       325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~  404 (729)
                      ++-++-+.+.++-.++.+|+  ....+++...|..|.+.|+-+.|++.+.+..+..-..+..  ++.......+|..|. 
T Consensus        81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~-  155 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYL-  155 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhc-
Confidence            44455666666666555443  4678899999999999999999999999988876655533  444445556666654 


Q ss_pred             hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (729)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (729)
                        +.+-.-+..++|-.++...++....-..-...|.......+|.+|...|-.++..+.
T Consensus       156 --D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  156 --DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             --cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence              455555566666667777776555444555567777778888888888888776654

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.28  E-value=5.9  Score=38.86  Aligned_cols=220  Identities=14%  Similarity=0.124  Sum_probs=117.1

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM  483 (729)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  483 (729)
                      .+++|++|++.+...                    +..+.+.|++.-|.+...-.++.+.+..   .+.......+++.+
T Consensus         2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l   58 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL   58 (260)
T ss_dssp             HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence            456777777766544                    4556666777777776666666666543   22223344566666


Q ss_pred             HHHcCCHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-----------HHHHHhCC
Q 004811          484 YNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA-----------LKIYNDAP  551 (729)
Q Consensus       484 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~  551 (729)
                      +...+.-+ +-..+..++++..+.   +.........+..+|..+.+.|++.+|..+|-.+           +...... 
T Consensus        59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-  134 (260)
T PF04190_consen   59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-  134 (260)
T ss_dssp             HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred             HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence            66654333 355667777777622   3334455678899999999999999999887421           1111111 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----CC------CCChHHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI----GE------RKSAFFGVALNQMGLACVQRYSINEAVE  621 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~  621 (729)
                      +.+.............|...++...|...+..-.+.+...    ..      ...+....++..+  .-++.++    ..
T Consensus       135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl--~t~e~~~----~~  208 (260)
T PF04190_consen  135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLL--LTCERDN----LP  208 (260)
T ss_dssp             TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHH--HHHHHT-----HH
T ss_pred             cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHH--HHHhcCc----HH
Confidence            3333333333444556778899999998888777663322    11      1112222222222  2223333    34


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (729)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  657 (729)
                      .|....+.+...... +|.....+..+|..|.....
T Consensus       209 ~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~~  243 (260)
T PF04190_consen  209 LFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQP  243 (260)
T ss_dssp             HHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---S
T ss_pred             HHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCCC
Confidence            555555554443322 56777788888888876543

; PDB: 3LKU_E 2WPV_G.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.21  E-value=0.12  Score=54.13  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=76.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (729)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (729)
                      .|..+..+|+...|++++..|+...+.       .....+.+||.+....|....|-.++.+++.+        ......
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--------~~sepl  677 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--------NSSEPL  677 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--------cccCch
Confidence            344556789999999999999876432       12345778999999999999999999999998        334445


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          644 VYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      .++.+|+.|..+.+.+.|++.|++|++.
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            7789999999999999999999999976

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.91  E-value=4.4  Score=36.01  Aligned_cols=149  Identities=13%  Similarity=0.085  Sum_probs=97.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004811          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (729)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (729)
                      |.-|+..+.-..+-..|..++++.                        ..++.++|+.-|....+   ...+..+  ..+
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA------------------------~~~k~d~Alaaf~~lek---tg~g~Yp--vLA   96 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLA------------------------QENKTDDALAAFTDLEK---TGYGSYP--VLA   96 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHH------------------------HcCCchHHHHHHHHHHh---cCCCcch--HHH
Confidence            334556666666666666666663                        33556667666654332   2233333  334


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (729)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (729)
                      ....+.+....|+...|+..|.++-.-.     ..|. ....+...-+.++...|-|+.-..       ..+.+.++.+|
T Consensus        97 ~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~  164 (221)
T COG4649          97 RMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP  164 (221)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence            5678899999999999999998765421     1111 112344445666777787766443       33444556688


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                      -...+...||..-.+.|++.+|..+|.+...
T Consensus       165 mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            8888899999999999999999999998875

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.78  E-value=0.7  Score=34.90  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                      ...-|.-++...+..+|+..++++++....     .++...++-.+..+|...|+|.+++.+..+-+++.....+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED   78 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            445566677888999999999999988533     4677788888999999999999999998888888766544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK10941 hypothetical protein; Provisional

Probab=93.78  E-value=0.75  Score=45.04  Aligned_cols=81  Identities=12%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      ....+.++-.+|...++++.|+.+.+..+.+        .|+...-+...|.+|.++|.+..|..-++..++.+     |
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P  246 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P  246 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence            4567788889999999999999999999999        78888888999999999999999999999999876     6


Q ss_pred             CChhHHHHHHHHHH
Q 004811          679 ANPDVDDEKRRLAE  692 (729)
Q Consensus       679 ~~p~~~~~~~~La~  692 (729)
                      ++|........+..
T Consensus       247 ~dp~a~~ik~ql~~  260 (269)
T PRK10941        247 EDPISEMIRAQIHS  260 (269)
T ss_pred             CchhHHHHHHHHHH
Confidence            66665555544443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.72  E-value=0.57  Score=38.20  Aligned_cols=95  Identities=20%  Similarity=0.275  Sum_probs=66.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHHH
Q 004811          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG----Q-------LENSLMCYTTGLEVQK  339 (729)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~-------~~~A~~~~~~al~~~~  339 (729)
                      ++.-++..|++-+|+++.+..+....    ....  .+..+..-|.++..+.    +       .-.++++|.++..+  
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~----~~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHG----EDES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHcc----CCCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc--
Confidence            46678999999999999999987752    1111  1124666677775543    2       23566777777776  


Q ss_pred             HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004811          340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (729)
Q Consensus       340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (729)
                            .|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus        74 ------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   74 ------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence                  6777888888888776667777777777777654

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.66  E-value=4.2  Score=39.96  Aligned_cols=128  Identities=16%  Similarity=0.055  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004811          415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK  494 (729)
Q Consensus       415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  494 (729)
                      +.+.++-...+.-......++.+.|..|++.|+-+.|++.+.+..+..-..+  ...+.......+|.+|...   +--.
T Consensus        87 ld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~---~lV~  161 (393)
T KOG0687|consen   87 LDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH---DLVT  161 (393)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH---HHHH
Confidence            3333333333333556778899999999999999999999988776544433  1334455556666666544   4444


Q ss_pred             HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      +..++|-.++++   |.+....-..-..-|.......++.+|-.+|-.++..+...
T Consensus       162 ~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~  214 (393)
T KOG0687|consen  162 ESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY  214 (393)
T ss_pred             HHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence            445555555555   55555444444455666677788888888888777665443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.62  E-value=1.4  Score=38.88  Aligned_cols=86  Identities=19%  Similarity=0.092  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      ...+..+..+-...++.+++..++....-+        .|.....-..-|.++...|+|.+|+.+|+.+..        .
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------~   73 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------R   73 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------c
Confidence            345566666777788999998888877777        788888888999999999999999999998653        3


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHh
Q 004811          680 NPDVDDEKRRLAELLKEAGRVR  701 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~  701 (729)
                      .|....+.-.++.++..+|+..
T Consensus        74 ~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   74 APGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             CCCChHHHHHHHHHHHHcCChH
Confidence            5666777777888888887754

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=7.8  Score=37.43  Aligned_cols=135  Identities=10%  Similarity=0.038  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004811          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (729)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (729)
                      .-++-++-+.+.++......+  ....+.++.++|..|.+.++.+.+.+++.+.+......+...+...+...+|.+|..
T Consensus        90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence            345556666666655544442  345578899999999999999999999999887777777777777777788888866


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      +.-..+.++.....++.     |.+....-..-...|.......+|.+|-.++-..+..+..
T Consensus       168 ~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         168 RKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            65555555544444433     2233333333334455666677888998888888877654

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.35  E-value=8  Score=37.27  Aligned_cols=182  Identities=14%  Similarity=0.100  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      +..+|.+....|+|++.+.++.+++..       +......-...+..+|-. .|....+...+..........   . .
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~---~-~   72 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK---G-N   72 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---T-T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc---c-h
Confidence            456788888999999999999888877       122223333444444422 344445555554444332221   0 1


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC----CcHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ----STVAGIEAQMGVMYYML-----G-----NYSDSYD  579 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~la~~~~~~-----g-----~~~~A~~  579 (729)
                      +..    ..+..-|. ..=-++=...+..++.+.....-..    ......+-..|..|...     |     -.+.|..
T Consensus        73 ~~~----~~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~  147 (236)
T PF00244_consen   73 EKQ----VKLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE  147 (236)
T ss_dssp             HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence            111    11111111 1111223344455555544431111    11112222334444321     1     2378999


Q ss_pred             HHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          580 SFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       580 ~~~~al~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      .|++|+.+... +.+.+|...+.+++.-...|...|+.++|+.+.++|+.....
T Consensus       148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~  201 (236)
T PF00244_consen  148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS  201 (236)
T ss_dssp             HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            99999999998 455555445555554444445689999999999999887554

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.16  E-value=12  Score=38.68  Aligned_cols=233  Identities=11%  Similarity=0.086  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      +..|+.....+...++-+.|+...++++...+     .       ..+.++.+|....+-+....+|+++.+.....+..
T Consensus       302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-----s-------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~  369 (660)
T COG5107         302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSP-----S-------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSM  369 (660)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-----c-------hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhh
Confidence            55566666667778899999999999887651     1       36678888888888888888898887665432211


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  424 (729)
                      .+.+..         -...|+++...+++-+-....           ..++..+-..-.+..-.+.|...|-++.+.- .
T Consensus       370 ~~s~~~---------s~~D~N~e~~~Ell~kr~~k~-----------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-~  428 (660)
T COG5107         370 GESESA---------SKVDNNFEYSKELLLKRINKL-----------TFVFCVHLNYVLRKRGLEAARKLFIKLRKEG-I  428 (660)
T ss_pred             hhhhhh---------ccccCCccccHHHHHHHHhhh-----------hhHHHHHHHHHHHHhhHHHHHHHHHHHhccC-C
Confidence            110000         001233322222221111100           1123333333344445666777776664321 1


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (729)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (729)
                      .+.+..   +++.+ .-|...|++.-|...|+-.+..        .++........-..+...++-..|..+|+.++...
T Consensus       429 ~~h~vy---i~~A~-~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~  496 (660)
T COG5107         429 VGHHVY---IYCAF-IEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERL  496 (660)
T ss_pred             CCccee---eeHHH-HHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence            111111   11111 2345678999999999888876        45555555555666778899999999999888775


Q ss_pred             hcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      ++.       ..-.+|..+...-..-|+...+..+-++.....|+
T Consensus       497 ~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         497 EKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence            441       22344555555555566666666665555555443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.12  E-value=1.2  Score=36.30  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----CHH-------HHHHHHHHHHHHHHHhc
Q 004811          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----RYD-------EAGFAYQKALTAFKTNK  466 (729)
Q Consensus       398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~-------~A~~~~~~al~~~~~~~  466 (729)
                      .+.-++..|++-+|++..+..+...   +........+...|.++..+.    +.+       .+++.|.++..+     
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h---~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH---GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc---cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence            4567889999999999999877543   233332355566677765443    333       344455555544     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                         .|..+..++.+|.-+...--|+++..-.++++.+
T Consensus        74 ---sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   74 ---SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               6767777777776655555566666666655544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.00  E-value=3.1  Score=40.22  Aligned_cols=79  Identities=23%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (729)
                      ..+...+..|...|.+.+|+++.++++++        +|-....+..|..++..+|+--.|+..|++.....++-+|-+-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            45666788899999999999999999999        9999999999999999999999999999999999888888665


Q ss_pred             hhHHHHH
Q 004811          681 PDVDDEK  687 (729)
Q Consensus       681 p~~~~~~  687 (729)
                      .+...-|
T Consensus       352 ddsieew  358 (361)
T COG3947         352 DDSIEEW  358 (361)
T ss_pred             chhHHHH
Confidence            5554444

>smart00028 TPR Tetratricopeptide repeats

Probab=92.84  E-value=0.16  Score=30.61  Aligned_cols=32  Identities=13%  Similarity=0.151  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .++..+|.++...|++++|. ..++.+++.+|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~-~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEAL-EYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence            46788999999999999999 999999998874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.74  E-value=2.6  Score=41.21  Aligned_cols=78  Identities=22%  Similarity=0.203  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      ...++..++..+...|+++.++..+++.+..        +|..-..|..+-..|...|+...|+..|++.-....+-+|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            4578889999999999999999999999999        99999999999999999999999999999999887777775


Q ss_pred             CChhHH
Q 004811          679 ANPDVD  684 (729)
Q Consensus       679 ~~p~~~  684 (729)
                      ......
T Consensus       224 ~P~~~~  229 (280)
T COG3629         224 DPAPEL  229 (280)
T ss_pred             CccHHH
Confidence            544433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.53  E-value=0.39  Score=30.77  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      .++..||.+-+..++|++|+.-|++++++.++...
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999999999999999999777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.52  E-value=1.6  Score=38.42  Aligned_cols=89  Identities=8%  Similarity=-0.033  Sum_probs=63.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .......+..+..+-...++.+++...+.-..-+        .|.....-..-|.++...|+|.+|+.+|+.+.+-    
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~----   73 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER----   73 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----
Confidence            3444556667777777888888888877755554        6888888888899999999999999998886544    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNEL  533 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~  533 (729)
                           .+....+--.++.++..+|+.
T Consensus        74 -----~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   74 -----APGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             -----CCCChHHHHHHHHHHHHcCCh
Confidence                 233344455567777777764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.44  E-value=4.8  Score=37.01  Aligned_cols=84  Identities=12%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL  480 (729)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  480 (729)
                      .++..-.-+.|+..|-++.     .......+...+.+|..|. .-+.++|+.++.+++++...    ++...+.++..|
T Consensus       115 y~Wsr~~d~~A~~~fL~~E-----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sL  184 (203)
T PF11207_consen  115 YHWSRFGDQEALRRFLQLE-----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSL  184 (203)
T ss_pred             HHhhccCcHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHH
Confidence            3444445566777665442     1223345667778887776 67899999999999998533    234567889999


Q ss_pred             HHHHHHcCCHHHHH
Q 004811          481 ADMYNRTGKLRESK  494 (729)
Q Consensus       481 a~~~~~~g~~~~A~  494 (729)
                      +.++...|+++.|-
T Consensus       185 as~~~~~~~~e~AY  198 (203)
T PF11207_consen  185 ASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHhcchhhhh
Confidence            99999999998874

>smart00101 14_3_3 14-3-3 homologues

Probab=92.31  E-value=11  Score=36.26  Aligned_cols=183  Identities=13%  Similarity=0.115  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCC
Q 004811          477 FVRLADMYNRTGKLRESKSYCENALRIYE-KPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      +..+|.+..+.++|++.+.+..++++... ..+       ...-.+.|..+|-. .|....+...+.. ++......+..
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL-------t~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~   75 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL-------TVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE   75 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC-------CHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch
Confidence            34578888999999999999999887632 111       11223334444432 3555555555554 22211111211


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHHHHHHHH-----cCC-----HHHHHH
Q 004811          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK---SAFFGVALNQMGLACVQ-----RYS-----INEAVE  621 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~-----~g~-----~~~A~~  621 (729)
                      ...     .+..-|.. .=-++-..+....+.+.....-+.   +......+-..|..|.-     .|+     .+.|..
T Consensus        76 ~~~-----~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       76 DHV-----ASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             HHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            110     11111110 012233445556666655432211   11122233334444432     222     568999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Q 004811          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  673 (729)
                      .|+.|+++......+.||-......+.+.+|. -+++.++|..+.++++.-.-
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai  202 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI  202 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999999888788889988888788777665 46999999988888876543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.29  E-value=0.95  Score=31.60  Aligned_cols=40  Identities=15%  Similarity=0.074  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  648 (729)
                      .+++.+|..+.+.|+|++|..+.+.++++        .|++..+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHH
Confidence            36778999999999999999999999999        78777655433

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.96  E-value=3.5  Score=41.84  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004811          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (729)
Q Consensus       309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (729)
                      .++..+|..|...|+++.|++.|-++-..+..     .......+.++-.+-...|+|.....+..+|............
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q  225 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ  225 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence            46889999999999999999999998777654     3567788888888889999998888888777655211000000


Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004811          389 LEEAADRRLMGLICETKGDHEAALEHLVLA  418 (729)
Q Consensus       389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a  418 (729)
                      ...+.+...-|.+...+++|..|..+|-.+
T Consensus       226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            000123334455555666777777777544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.95  E-value=0.24  Score=45.67  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ......|+.+.|.+.|.+++.+        -|+....|+++|....+.|+++.|. ..|++.++++|+
T Consensus         3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~   61 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPE   61 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcc
Confidence            3456778999999999999987        5999999999999999999999999 999999999998

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.90  E-value=1.2  Score=31.10  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (729)
                      +.++.+|..+.++|+|++|..+.+.++++        .|++..+...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L   40 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence            36788999999999999999999999988        5666655443

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.28  E-value=2.2  Score=44.25  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (729)
Q Consensus       267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (729)
                      ++..|.++++-+|+|..|++.++.. ++.....-...+...+.+++.+|.+|..+++|.+|+..|...+-...+
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778889999999999998753 333222222334456677999999999999999999999998876544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.26  E-value=4.5  Score=41.15  Aligned_cols=106  Identities=7%  Similarity=-0.029  Sum_probs=77.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC---ch-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD---PR-------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                      .-|..++++++|..|..-|..+|+++.+...-..   +.       ...+...|..||...++.+.|+....+.+.+.|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            3456677888888888888888888766432222   11       1224567889999999999999999999988877


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       383 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      ...        -+...|.++..+.+|.+|...+--+.-++...+
T Consensus       261 ~fr--------nHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  261 YFR--------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             hhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            653        367778888999999999887766655544444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.17  E-value=3.2  Score=42.17  Aligned_cols=101  Identities=9%  Similarity=0.051  Sum_probs=78.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (729)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (729)
                      -|..++++++|..|..-|..+++++.+......          .....+-..|..||+.+++.+.|+....+.+.+    
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----  257 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----  257 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence            355677888888888888888888765321111          112334567889999999999999999999988    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                          +|....-+...|.|+..+.+|.+|..-+--+.-++
T Consensus       258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                89888888999999999999999988776665444

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.09  E-value=6.4  Score=36.26  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (729)
                      -++|...|-++-       +...-+.+...+.||..|. ..+.++|+.++.+++++..    +++.-+++++..|+.++.
T Consensus       122 d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~  189 (203)
T PF11207_consen  122 DQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQ  189 (203)
T ss_pred             cHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHH
Confidence            356665555432       2223455667888888776 6788999999999998752    333556888999999999


Q ss_pred             HhCCHhHHH
Q 004811          696 EAGRVRSRK  704 (729)
Q Consensus       696 ~~g~~~~A~  704 (729)
                      .+|+++.|.
T Consensus       190 ~~~~~e~AY  198 (203)
T PF11207_consen  190 KLKNYEQAY  198 (203)
T ss_pred             Hhcchhhhh
Confidence            999999886

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.97  E-value=4.1  Score=32.31  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       328 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                      +..+++.+..        +|....+.+.+|..+...|++++|++.+-.++...+...+
T Consensus         8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~   57 (90)
T PF14561_consen    8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED   57 (90)
T ss_dssp             HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence            3455666666        7899999999999999999999999999999888766543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.87  E-value=23  Score=37.97  Aligned_cols=175  Identities=14%  Similarity=0.074  Sum_probs=108.0

Q ss_pred             cCChHHHHHHHHHhcccchhh----ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--------
Q 004811          278 LGQYNEAIPVLEQSIEIPVIE----EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET--------  345 (729)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------  345 (729)
                      ...|++|...|.-+.......    .-..+ +.-+..+..++.++..+|+.+-|....+++|-.....+.+.        
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ss-PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISS-PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccC-CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            455788888888777654210    00111 23456689999999999999999999999988776654321        


Q ss_pred             -----Cch---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004811          346 -----DPR---VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (729)
Q Consensus       346 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  417 (729)
                           .|.   ...+++..-..+.+.|-+..|.++++-.+.+.+.....      .+++.+-....+..+|+=-++.++.
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl------~~l~~ID~~ALrareYqwiI~~~~~  403 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL------GILYLIDIYALRAREYQWIIELSNE  403 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch------hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                 122   22233444455667899999999999999988764321      2344444444555666666665554


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004811          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSR---YDEAGFAYQKALTA  461 (729)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  461 (729)
                      .. ........|..... ..+|..|.....   -..|...+.+|+.+
T Consensus       404 ~e-~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~  448 (665)
T KOG2422|consen  404 PE-NMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKH  448 (665)
T ss_pred             HH-hhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence            31 11222223333322 345666666555   56788888888887

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.79  E-value=32  Score=38.64  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (729)
                      ......+....|.-....|++++|+.+|.-|
T Consensus       410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La  440 (613)
T PF04097_consen  410 EDFLREIIEQAAREAEERGRFEDAILLYHLA  440 (613)
T ss_dssp             SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4445566667777777788888877776543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>smart00101 14_3_3 14-3-3 homologues

Probab=90.77  E-value=16  Score=35.16  Aligned_cols=182  Identities=14%  Similarity=0.104  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004811          353 CRYLAEAHVQALQFSEAQKFCQMALDIH-KDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE  430 (729)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (729)
                      +..+|.+..+.++|++.+.+.+++++.. +....      ..-.+.+..+|- ..|....+...+......-...+....
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt------~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~   77 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT------VEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH   77 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC------HHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence            4567888888999999999999988752 21211      122455555553 346666666665432111111111111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHc-----CC-----HHHHHHHH
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH---PAVASVFVRLADMYNRT-----GK-----LRESKSYC  497 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~  497 (729)
                      .     .+..-|. ..=-++-...+...+.+.....-+..   ......+-..|..|...     |+     .+.|...|
T Consensus        78 ~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY  151 (244)
T smart00101       78 V-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY  151 (244)
T ss_pred             H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            1     1111111 11123445566777777665543321   22223333445555432     22     45889999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHH
Q 004811          498 ENALRIYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~  547 (729)
                      +.|+++....++.. +|.......+.+.. |.-+++.++|..+.++|+.-.
T Consensus       152 ~~A~e~a~~~L~pt-~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      152 KSAQDIALAELPPT-HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999987755444 44444444444444 455799999988877776654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>smart00028 TPR Tetratricopeptide repeats

Probab=90.70  E-value=0.34  Score=29.01  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (729)
                      .++..+|.++...++++.|...+++++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            4678899999999999999999999987654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.42  E-value=13  Score=33.27  Aligned_cols=123  Identities=18%  Similarity=0.109  Sum_probs=86.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHH
Q 004811          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNL  648 (729)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l  648 (729)
                      .+..++|+..|...-+    .+-.  .+...+....|.+..+.|+...|+.+|.++-...      ..|...  .+...-
T Consensus        71 ~~k~d~Alaaf~~lek----tg~g--~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlra  138 (221)
T COG4649          71 ENKTDDALAAFTDLEK----TGYG--SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRA  138 (221)
T ss_pred             cCCchHHHHHHHHHHh----cCCC--cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHH
Confidence            3456677766654432    2221  2234677888999999999999999999876531      123322  244555


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                      +.++...|-|++-.       ...+.+.++.+|....+...||..-.+.|++.+|. ..|.++..
T Consensus       139 a~lLvD~gsy~dV~-------srvepLa~d~n~mR~sArEALglAa~kagd~a~A~-~~F~qia~  195 (221)
T COG4649         139 AYLLVDNGSYDDVS-------SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK-SWFVQIAN  195 (221)
T ss_pred             HHHHhccccHHHHH-------HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH-HHHHHHHc
Confidence            66677778776544       34444556888999999999999999999999999 99988776

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.38  E-value=8.8  Score=39.33  Aligned_cols=116  Identities=16%  Similarity=0.035  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc----CCCCCHhHHHHHHHHHHHHHHcCC---hHHHHHHHHHhccc
Q 004811          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGA----NGKPSLELVMCLHVIAAIYCSLGQ---YNEAIPVLEQSIEI  294 (729)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  294 (729)
                      ..+...|+.++.... |.+|+.++..|-+.|-.+.    +.-+  +.+..-..+-+||+.+.+   ...|..-+..+-+-
T Consensus       164 lg~hekaRa~m~re~-y~eAl~~LleADe~F~~Cd~klLe~VD--NyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg  240 (568)
T KOG2561|consen  164 LGLHEKARAAMEREM-YSEALLVLLEADESFSLCDSKLLELVD--NYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG  240 (568)
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHhhhHHHHHhhc--chhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence            345778888998875 9999999998888775542    1111  223334456777887765   34555555444443


Q ss_pred             chhhccc-----------cchH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          295 PVIEEGQ-----------EHAL--AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (729)
Q Consensus       295 ~~~~~~~-----------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (729)
                      +...+|.           ..|.  ..+..+..-|.+.+++|+-++|.++++.+......
T Consensus       241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e  299 (568)
T KOG2561|consen  241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE  299 (568)
T ss_pred             hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            3322222           2221  23344566688888888888888888887766554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.20  E-value=9.2  Score=40.73  Aligned_cols=127  Identities=20%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004811          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV-GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR  395 (729)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  395 (729)
                      .....++++++....... ++.        |.. ..-...++..+.++|..+.|+.+.+.--                ..
T Consensus       270 ~av~~~d~~~v~~~i~~~-~ll--------~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------------~r  324 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAAS-NLL--------PNIPKDQGQSIARFLEKKGYPELALQFVTDPD----------------HR  324 (443)
T ss_dssp             HHHHTT-HHH-----HHH-HTG--------GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------------HH
T ss_pred             HHHHcCChhhhhhhhhhh-hhc--------ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------------HH
Confidence            344578888877666311 111        111 2335667777888888888877653321                12


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (729)
Q Consensus       396 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (729)
                      +   .+....|+++.|.+...+           ......|..||.....+|+++-|..+|+++-+.              
T Consensus       325 F---eLAl~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------  376 (443)
T PF04053_consen  325 F---ELALQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF--------------  376 (443)
T ss_dssp             H---HHHHHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------
T ss_pred             h---HHHHhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------
Confidence            2   334577888888776532           223357888999999999999999988876443              


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 004811          476 VFVRLADMYNRTGKLRESKSYCE  498 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~  498 (729)
                        ..|..+|...|+.+.=.++..
T Consensus       377 --~~L~lLy~~~g~~~~L~kl~~  397 (443)
T PF04053_consen  377 --SGLLLLYSSTGDREKLSKLAK  397 (443)
T ss_dssp             --HHHHHHHHHCT-HHHHHHHHH
T ss_pred             --cccHHHHHHhCCHHHHHHHHH
Confidence              345566777777654433333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.17  E-value=20  Score=35.29  Aligned_cols=111  Identities=10%  Similarity=-0.013  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (729)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (729)
                      ....+...||.+|...++|..|-..+.-. .........+.-.....+..+|.+|...++..+|..+..++.-+.....+
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            45667889999999999999988776432 22211111122334567888999999999999999999988655554444


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL  459 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  459 (729)
                      .......-...|+++-..++|-+|...|.+..
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44344444455677777777777766665443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.89  E-value=5.4  Score=42.46  Aligned_cols=157  Identities=19%  Similarity=0.197  Sum_probs=87.4

Q ss_pred             HHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004811          361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (729)
Q Consensus       361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (729)
                      ...++++++..+... -++.|...       ......++..+..+|-++.|+....           ++   ...+   .
T Consensus       272 v~~~d~~~v~~~i~~-~~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~~~-----------D~---~~rF---e  326 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAA-SNLLPNIP-------KDQGQSIARFLEKKGYPELALQFVT-----------DP---DHRF---E  326 (443)
T ss_dssp             HHTT-HHH-----HH-HHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS------------H---HHHH---H
T ss_pred             HHcCChhhhhhhhhh-hhhcccCC-------hhHHHHHHHHHHHCCCHHHHHhhcC-----------Ch---HHHh---H
Confidence            346788887666531 12222221       1236678888899999999987653           22   1222   3


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004811          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (729)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (729)
                      +..+.|+++.|.+..++             ......|..||......|+++-|..+|+++-..                 
T Consensus       327 LAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-----------------  376 (443)
T PF04053_consen  327 LALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF-----------------  376 (443)
T ss_dssp             HHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-----------------
T ss_pred             HHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-----------------
Confidence            45678998888765432             224468999999999999999999999886433                 


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (729)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (729)
                      ..|..+|...|+.+.=.++.    .+.... +.       ++..-.+++..|+.++.++.+.++
T Consensus       377 ~~L~lLy~~~g~~~~L~kl~----~~a~~~-~~-------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  377 SGLLLLYSSTGDREKLSKLA----KIAEER-GD-------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHHCT-HHHHHHHH----HHHHHT-T--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             cccHHHHHHhCCHHHHHHHH----HHHHHc-cC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34566777778764433333    333222 11       122234455667777776666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK10941 hypothetical protein; Provisional

Probab=89.61  E-value=2  Score=42.18  Aligned_cols=66  Identities=11%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..+.+|-.+|.+.++++.|+.+.+..+.+        .|+.+.-+...|.+|.++|.+..|. ..|+..++..|+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~  247 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCC
Confidence            36678888999999999999999999987        5777778888999999999999999 999999999998

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=89.55  E-value=13  Score=33.41  Aligned_cols=164  Identities=18%  Similarity=0.193  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHH
Q 004811          349 VGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-----TKGDHEAALEHLVLASMTM  422 (729)
Q Consensus       349 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~  422 (729)
                      .++....|+..+. .+.+|++|...|       ..+-+....  +...+.+|..++     ..+++..|++.+..+..  
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~-------K~nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--  101 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVF-------KKNCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--  101 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH-------HhcccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--
Confidence            4455666665443 233455555444       443332221  344566665554     34578899999987753  


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH----------
Q 004811          423 IANDQDAEVASVDCSIGDTYLSL-----S--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN----------  485 (729)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----------  485 (729)
                            .....+...+|.++..-     +  +..+|++++.++-++          ....+.+.|...|.          
T Consensus       102 ------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~a  165 (248)
T KOG4014|consen  102 ------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNA  165 (248)
T ss_pred             ------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccC
Confidence                  33345556677666532     2  367888888888765          11223333333333          


Q ss_pred             --------------HcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHH
Q 004811          486 --------------RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIY  547 (729)
Q Consensus       486 --------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  547 (729)
                                    ...+.+.|..+..+|-++           ....+..++.+.|..    -.+.++|..+-.+|.++.
T Consensus       166 p~~g~p~~~~~~~~~~kDMdka~qfa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  166 PGEGKPLDRAELGSLSKDMDKALQFAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             CCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence                          334556666666555555           234556666666653    236778888888888877


Q ss_pred             HhC
Q 004811          548 NDA  550 (729)
Q Consensus       548 ~~~  550 (729)
                      ...
T Consensus       235 ~e~  237 (248)
T KOG4014|consen  235 EEL  237 (248)
T ss_pred             HHH
Confidence            654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=89.49  E-value=0.91  Score=43.86  Aligned_cols=70  Identities=14%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 004811          606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD  685 (729)
Q Consensus       606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~  685 (729)
                      .|.-..+.|+.++|..+|+.|+.+        .|...+++..+|.+.....+.-+|-.+|-+|+.+        +|.+..
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse  185 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE  185 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence            344456789999999999999999        8888899999999999999999999999999976        455555


Q ss_pred             HHHHHH
Q 004811          686 EKRRLA  691 (729)
Q Consensus       686 ~~~~La  691 (729)
                      ++.+.+
T Consensus       186 ALvnR~  191 (472)
T KOG3824|consen  186 ALVNRA  191 (472)
T ss_pred             HHhhhh
Confidence            554433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.37  E-value=5.5  Score=34.57  Aligned_cols=83  Identities=18%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      +..+..+-...++++++..++...--+        .|....+-..-|.++...|+|.+|+..|+...+-        .+.
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~~~   76 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------AGA   76 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------CCC
Confidence            334444445588899988888777666        7888888888999999999999999999987642        334


Q ss_pred             HHHHHHHHHHHHHHhCCHh
Q 004811          683 VDDEKRRLAELLKEAGRVR  701 (729)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~  701 (729)
                      .....-.++.++..+|+..
T Consensus        77 ~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        77 PPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             chHHHHHHHHHHHhcCChH
Confidence            4555566777777777654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=89.34  E-value=42  Score=37.76  Aligned_cols=149  Identities=10%  Similarity=-0.029  Sum_probs=84.5

Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHHH
Q 004811          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL---ICETKGDHEAALEHLVLASMTM  422 (729)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~---~~~~~g~~~~A~~~~~~al~~~  422 (729)
                      ++.....+..|-.++...|++++-...-.++.++.|-..        ..|.....   .....++-..+...|++++.-.
T Consensus       109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~--------~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy  180 (881)
T KOG0128|consen  109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP--------HLWLEWLKDELSMTQSEERKEVEELFEKALGDY  180 (881)
T ss_pred             cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh--------HHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence            455556677777888888998887776666666665432        11222211   1122367777888888886432


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (729)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (729)
                      .........+......+..+...++++.-...|.+++...-..... -......+..+-..|...-..++-+.++...+.
T Consensus       181 ~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~  259 (881)
T KOG0128|consen  181 NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQVIALFVRELK  259 (881)
T ss_pred             ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            2222222333333334444556678888889999988764333211 223344555555555555555666666666655


Q ss_pred             H
Q 004811          503 I  503 (729)
Q Consensus       503 ~  503 (729)
                      .
T Consensus       260 ~  260 (881)
T KOG0128|consen  260 Q  260 (881)
T ss_pred             c
Confidence            4

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.34  E-value=3  Score=31.46  Aligned_cols=50  Identities=10%  Similarity=0.050  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  270 (729)
                      .+..+...|..+-..|+ +.+|+.+|++|++++.+.....|+......+..
T Consensus         5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~   54 (75)
T cd02682           5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ   54 (75)
T ss_pred             HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            46677888988999997 999999999999999988776666444433433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.30  E-value=28  Score=35.66  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (729)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (729)
                      +.+......-.++..+|..|...|+++.|++.|-++...+..     .......+.++-.+-...|+|..-..+..+|..
T Consensus       141 K~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s  215 (466)
T KOG0686|consen  141 KDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAES  215 (466)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence            333334555678889999999999999999999998887654     355677888888888899999888888877766


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                      ..... ..........+...-|.+...+++|..|..+|-.+.
T Consensus       216 t~~~~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  216 TPDAN-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             Cchhh-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            52000 000000112233444555556668888888876543

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=88.95  E-value=8.4  Score=32.87  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=59.4

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004811          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (729)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (729)
                      +.-..-..++++++..+...-.-.+++....+|...+....      .+...|......     +.....+..|...|..
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~  108 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF  108 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence            55666678899999988664323445566666666555332      666777655443     3334457788899999


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 004811          568 YYMLGNYSDSYDSFKNAI  585 (729)
Q Consensus       568 ~~~~g~~~~A~~~~~~al  585 (729)
                      +...|++++|.+.|+.++
T Consensus       109 le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  109 LEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHTT-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhC
Confidence            999999999999998765

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.52  E-value=0.66  Score=26.79  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHH
Q 004811          267 CLHVIAAIYCSLGQYNEAIPVLEQ  290 (729)
Q Consensus       267 ~~~~la~~~~~~g~~~~A~~~~~~  290 (729)
                      ++..+|.++...|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567899999999999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=88.35  E-value=2.9  Score=43.81  Aligned_cols=103  Identities=14%  Similarity=0.053  Sum_probs=78.6

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHc---CChHHHHHHHHHhc
Q 004811          216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---GQYNEAIPVLEQSI  292 (729)
Q Consensus       216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al  292 (729)
                      .-|+.....+..|+-.+..+. ...|+..|.+++...         |....+|.+.+.++++.   |+.-.|+.....|+
T Consensus       369 eL~e~ie~~~~egnd~ly~~~-~~~~i~~~s~a~q~~---------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al  438 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESI-VSGAISHYSRAIQYV---------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL  438 (758)
T ss_pred             hchHHHHHHHhhccchhhhHH-HHHHHHHHHHHhhhc---------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc
Confidence            346677777777777777776 888999999988765         44577788888888764   45566777777888


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (729)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (729)
                      ++.         .....+++.|+.++..++++.+|+.+...+...
T Consensus       439 rln---------~s~~kah~~la~aL~el~r~~eal~~~~alq~~  474 (758)
T KOG1310|consen  439 RLN---------PSIQKAHFRLARALNELTRYLEALSCHWALQMS  474 (758)
T ss_pred             cCC---------hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence            775         345667999999999999999999987765544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.16  E-value=0.63  Score=26.87  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      .+...+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            367889999999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.08  E-value=29  Score=34.29  Aligned_cols=109  Identities=15%  Similarity=0.039  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                      ....+.+...||.+|...++|..|-..+.-.    +...|.    .......+..+|.+|++.++..+|..+..++-=+.
T Consensus        99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~  174 (399)
T KOG1497|consen   99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ  174 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence            3456777889999999999999887665421    111121    12345667899999999999999999998875443


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (729)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (729)
                      ...  .++......-.-.|+++-..++|-+|...|-+..
T Consensus       175 a~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  175 AES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             hcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332  2222222222334566666677777766665543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=87.69  E-value=7.7  Score=32.98  Aligned_cols=69  Identities=19%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          641 TLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      .....+++|+++....+.   .+.+.+++..+.       ..+| ...+..+.||.-+.+.++|+.++ .+++.+++..|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~  102 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEP  102 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCC
Confidence            345788999999876654   445555555443       2344 44677889999999999999999 99999999998


Q ss_pred             c
Q 004811          717 R  717 (729)
Q Consensus       717 ~  717 (729)
                      +
T Consensus       103 ~  103 (149)
T KOG3364|consen  103 N  103 (149)
T ss_pred             C
Confidence            6

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.55  E-value=8.2  Score=37.87  Aligned_cols=71  Identities=14%  Similarity=0.068  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                      .+.++..++..+...|+++.++..+++.+..        +|..-.+|..+-..|...|+...|+..|++.-.......+
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            4556888999999999999999999999998        8999999999999999999999999999998885544443

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=87.45  E-value=81  Score=38.79  Aligned_cols=155  Identities=17%  Similarity=0.145  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----C--------------------
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----R--------------------  447 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~--------------------  447 (729)
                      +.....+|.++...|.+.+|+.+|..|+...+..++....+.++-.++.+....+    +                    
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~  321 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS  321 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence            4557789999999999999999999999999999988888777776655442211    0                    


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHHhcC---CCCh--hHHHHHHHHHHHHHHcC--
Q 004811          448 --------------------------------YDEAGFAYQKALTAFKTNKG---ENHP--AVASVFVRLADMYNRTG--  488 (729)
Q Consensus       448 --------------------------------~~~A~~~~~~al~~~~~~~~---~~~~--~~~~~~~~la~~~~~~g--  488 (729)
                                                      ...-...+++++.++.+...   +..|  -...+...++.++....  
T Consensus       322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~  401 (1185)
T PF08626_consen  322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS  401 (1185)
T ss_pred             CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence                                            11122345555555554431   1112  23456667777777776  


Q ss_pred             ------------------CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          489 ------------------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       489 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                                        .-.++..++.+++.+.-.   .-...+...++..+|.+|...|-..++.-+++.++...-.
T Consensus       402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~---~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~  477 (1185)
T PF08626_consen  402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK---DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP  477 (1185)
T ss_pred             cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh---hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence                              677777888888776433   2235667888999999999999888887777777766543

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=87.13  E-value=34  Score=34.14  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=69.7

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (729)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (729)
                      .+..+.++.++|++++++..........+.........+|.++...|+..++.+.+...-.......+- .+.....++.
T Consensus        83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~  161 (380)
T KOG2908|consen   83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYS  161 (380)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHH
Confidence            344566799999999999988877777666778888899999999999999999998887766555432 2323444555


Q ss_pred             HHH-HHHHcCCHHHHHHH
Q 004811          480 LAD-MYNRTGKLRESKSY  496 (729)
Q Consensus       480 la~-~~~~~g~~~~A~~~  496 (729)
                      ++. .|...|++...-..
T Consensus       162 lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  162 LSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHhHHHHHHH
Confidence            544 45557777654433

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.06  E-value=45  Score=35.36  Aligned_cols=200  Identities=10%  Similarity=0.049  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (729)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (729)
                      +..+-.++...-.+.-....+.+.+.+         ...-.++..++.+|... ..++-...+++.++..         -
T Consensus        69 l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---------f  129 (711)
T COG1747          69 LVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---------F  129 (711)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---------c
Confidence            334445555555566667778888876         34457888999999988 4566677777777762         2


Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      ..+..-..|+..|.. ++...+..+|.+++...-.. .....+-.+|..+-..  --.+.+.-   +....++....+..
T Consensus       130 nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~f---l~l~~kiqt~lg~~  202 (711)
T COG1747         130 NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFF---LRLQKKIQTKLGEG  202 (711)
T ss_pred             hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHH---HHHHHHHHHhhccc
Confidence            223444567777766 88899999999998765432 1112222333322221  11223322   22222332333322


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--------------------
Q 004811          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--------------------  654 (729)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------  654 (729)
                      .   ...++..+-.-|....++.+|++.+.-.++.        +.....+.-++...+..                    
T Consensus       203 ~---~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--------d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~  271 (711)
T COG1747         203 R---GSVLMQDVYKKYSENENWTEAIRILKHILEH--------DEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQS  271 (711)
T ss_pred             h---HHHHHHHHHHHhccccCHHHHHHHHHHHhhh--------cchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhc
Confidence            1   1233444445566778999999999877776        33333344444433333                    


Q ss_pred             cCChHHHHHHHHHHHHH
Q 004811          655 IGRLDDAIEILEFVVGI  671 (729)
Q Consensus       655 ~g~~~~A~~~~~~al~~  671 (729)
                      -.++.+++.-|++.+..
T Consensus       272 ~rnf~~~l~dFek~m~f  288 (711)
T COG1747         272 GRNFFEALNDFEKLMHF  288 (711)
T ss_pred             cccHHHHHHHHHHHhee
Confidence            34566677777666543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.96  E-value=6.4  Score=34.20  Aligned_cols=86  Identities=8%  Similarity=-0.062  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      ....+..+...-...++.+++...+...--+        .|.....-..-|.++...|+|.+|+..|+...+-       
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------   73 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-------   73 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence            3344455555555688888887777654444        6877888888899999999999999988887654       


Q ss_pred             CChHHHHHHHHHHHHHHHhcchH
Q 004811          511 VPPEEIASGLTDVSSIYESMNEL  533 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~  533 (729)
                        .+......-.++.++..+|+.
T Consensus        74 --~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        74 --AGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             --CCCchHHHHHHHHHHHhcCCh
Confidence              112233344566666666664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=86.93  E-value=87  Score=38.56  Aligned_cols=153  Identities=11%  Similarity=0.003  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc----------------------
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM----------------------  530 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------------------  530 (729)
                      ..+....+|.++...|++.+|+..|.+|+...+.   ..|.-..+.++-.++.+..-.                      
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~---~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~  317 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS---SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS  317 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh---cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence            4566678899999999999999999999999887   445555566655554332211                      


Q ss_pred             -----------------------------------------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004811          531 -----------------------------------------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (729)
Q Consensus       531 -----------------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (729)
                                                               ..+++|+.+|.++.....+. .......++...++.++.
T Consensus       318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~-~p~lv~~E~~lr~~~~l~  396 (1185)
T PF08626_consen  318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY-VPQLVYSEACLRFARFLV  396 (1185)
T ss_pred             cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc-CcchHHHHHHHHHHHHHH
Confidence                                                     12334444444443322211 222244556667777777


Q ss_pred             HcC--------------------CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          570 MLG--------------------NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       570 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      ...                    .-.++..++.+++.+.-.  .-........+..+|.+|...|-..++.-+++.++..
T Consensus       397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~--~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~  474 (1185)
T PF08626_consen  397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK--DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ  474 (1185)
T ss_pred             HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh--hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            777                    677788888888876432  2223335678999999999999988888888887776


Q ss_pred             HH
Q 004811          630 LE  631 (729)
Q Consensus       630 ~~  631 (729)
                      +-
T Consensus       475 ~~  476 (1185)
T PF08626_consen  475 LV  476 (1185)
T ss_pred             hc
Confidence            53

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=86.68  E-value=7.9  Score=33.05  Aligned_cols=87  Identities=13%  Similarity=0.103  Sum_probs=55.8

Q ss_pred             CChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 004811          279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE  358 (729)
Q Consensus       279 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  358 (729)
                      +.-..-..++++++........-.+....+.+|...+...      .++..+|..+....   .   ....+..|...|.
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~~---I---G~~~A~fY~~wA~  107 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSKG---I---GTKLALFYEEWAE  107 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHHT---T---STTBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHcC---c---cHHHHHHHHHHHH
Confidence            4555666778887776543322222233344444444422      27888888765541   1   3467788999999


Q ss_pred             HHHHhcCHHHHHHHHHHHH
Q 004811          359 AHVQALQFSEAQKFCQMAL  377 (729)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al  377 (729)
                      .+...|++.+|.+.|+.++
T Consensus       108 ~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  108 FLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhC
Confidence            9999999999999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.52  E-value=44  Score=34.93  Aligned_cols=141  Identities=15%  Similarity=0.075  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004811          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (729)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (729)
                      ......+.-.+..++|..|...+......   .++...  ...+..+  |..+...-++.+|.++++..+.....+    
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----  202 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----  202 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence            34556677778899999999999998875   222222  2334444  455567889999999999877642110    


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                       ......+..+..+       -++...+...............+....-++.-|.--...|+|+.|+..+-+++++.-+.
T Consensus       203 -~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~  274 (379)
T PF09670_consen  203 -NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH  274 (379)
T ss_pred             -HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence             0001111111111       12222222222211110000011112222223333346899999999999999886653

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=86.48  E-value=75  Score=37.39  Aligned_cols=108  Identities=14%  Similarity=0.077  Sum_probs=75.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004811          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (729)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (729)
                      ...++.....|+.|+..|++...-.+   |...   -.++.+.+|.+...+-.-..--..|.+|+..+..+.+  .+..+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  552 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP  552 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence            45667777889999999999876652   2221   2345777887776543322222566666666655533  24555


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (729)
                      --|...|.+|...|+|++-+++|.-|++.++.....
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            567788889999999999999999999999877653

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=86.30  E-value=38  Score=33.84  Aligned_cols=95  Identities=9%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             HHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 004811          526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ  605 (729)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  605 (729)
                      +....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-..........+.. ...++.
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V-h~~fY~  161 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV-HSSFYS  161 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh-hhhHHH
Confidence            3445668999999999999887765 44456667778899999999999999999999888877776655433 334444


Q ss_pred             HH-HHHHHcCCHHHHHHH
Q 004811          606 MG-LACVQRYSINEAVEL  622 (729)
Q Consensus       606 la-~~~~~~g~~~~A~~~  622 (729)
                      ++ ..|...|++..+...
T Consensus       162 lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  162 LSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHhHHHHHHH
Confidence            54 445556776654433

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.79  E-value=49  Score=34.61  Aligned_cols=65  Identities=15%  Similarity=-0.019  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (729)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (729)
                      ....+..++..++|..|...|......   ..+...  .........|..++..-++.+|...++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            344566778899999999999998763   111111  12222334455567788899999999987765

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=85.45  E-value=2.3  Score=41.25  Aligned_cols=62  Identities=15%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..|.-....|+.++|..+|+.|+.+        .|.+++++..+|.+.....+.-+|- .+|-+|+.++|.
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~AD-q~Y~~ALtisP~  182 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEAD-QCYVKALTISPG  182 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhh-hhhheeeeeCCC
Confidence            3444456789999999999999988        5888889999999999999999999 999999999996

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=85.40  E-value=22  Score=38.10  Aligned_cols=77  Identities=14%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             hhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          429 AEVASVDCSIGDTYLS--LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       429 ~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      .....++.+||.+-..  ...-..++.+|.+|+...+..++   .....-|..+|..|++.+++.+|+..+-++-...+.
T Consensus       274 ~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~  350 (618)
T PF05053_consen  274 ARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRK  350 (618)
T ss_dssp             TT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred             hhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555432  23345678999999999998884   334566788999999999999999999999888766


Q ss_pred             CC
Q 004811          507 PV  508 (729)
Q Consensus       507 ~~  508 (729)
                      ..
T Consensus       351 Yn  352 (618)
T PF05053_consen  351 YN  352 (618)
T ss_dssp             SB
T ss_pred             cc
Confidence            43

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=84.92  E-value=43  Score=33.21  Aligned_cols=53  Identities=21%  Similarity=0.157  Sum_probs=28.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (729)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (729)
                      .+..+..+-++....++++         ++.-+.+|..|+.-  ..--..+|..++++|++...
T Consensus       195 WRERnp~~RI~~A~~ALeI---------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e  247 (556)
T KOG3807|consen  195 WRERNPPARIKAAYQALEI---------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGE  247 (556)
T ss_pred             HHhcCcHHHHHHHHHHHhc---------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH
Confidence            3344455555556666666         34445555555532  22334566677777666543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=84.91  E-value=5.7  Score=41.70  Aligned_cols=86  Identities=19%  Similarity=0.180  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH---HHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004811          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA---IEILEFVVGIREEKLGTANPDVDDEKRRLA  691 (729)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~~~~g~~~p~~~~~~~~La  691 (729)
                      ....|+..|.+++..        .|+....+.+.|.++.+.+-...+   +.-...++.+        +|-...++++|+
T Consensus       389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~la  452 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRLA  452 (758)
T ss_pred             HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHHH
Confidence            356677778887776        677777788888887776544443   3333444433        688888889999


Q ss_pred             HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +++..++++.+|+ .....+....|.
T Consensus       453 ~aL~el~r~~eal-~~~~alq~~~Pt  477 (758)
T KOG1310|consen  453 RALNELTRYLEAL-SCHWALQMSFPT  477 (758)
T ss_pred             HHHHHHhhHHHhh-hhHHHHhhcCch
Confidence            9999999998888 877777777773

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.85  E-value=62  Score=34.94  Aligned_cols=172  Identities=13%  Similarity=0.112  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----------
Q 004811          407 DHEAALEHLVLASMTMIAN------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-----------  469 (729)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------  469 (729)
                      .|++|...|.-+...+..+      ...|.....+..++.++..+|+.+-|....+++|=.+.....+.           
T Consensus       253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~  332 (665)
T KOG2422|consen  253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP  332 (665)
T ss_pred             HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence            3556666666555443322      23577778889999999999999999999999987776655321           


Q ss_pred             --Ch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          470 --HP---AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       470 --~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                        ++   ....+++..-..+.+.|-+.-|.++++-.+.+-..    . +|.  .+.+.+-....+..+|.=-+.+++..-
T Consensus       333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~----e-DPl--~~l~~ID~~ALrareYqwiI~~~~~~e  405 (665)
T KOG2422|consen  333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS----E-DPL--GILYLIDIYALRAREYQWIIELSNEPE  405 (665)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc----C-Cch--hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence              12   22334444455667789999999999988887211    1 221  122222223334445544444444331


Q ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q 004811          545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISKL  588 (729)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~  588 (729)
                      .. ... ...+... .-..+|..|.....   -..|...+.+|+...
T Consensus       406 ~~-n~l-~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~  449 (665)
T KOG2422|consen  406 NM-NKL-SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHH  449 (665)
T ss_pred             hh-ccH-hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence            11 111 1111111 11245566665554   567788888888764

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.79  E-value=7.1  Score=29.84  Aligned_cols=50  Identities=22%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  270 (729)
                      .+..+...|..+-..|+ |++|+.+|.+|+..+.......+++..-..+..
T Consensus         5 ~a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~   54 (77)
T cd02683           5 AAKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQ   54 (77)
T ss_pred             HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            45567788888888887 999999999999999887666666555444443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.66  E-value=2.5  Score=28.16  Aligned_cols=26  Identities=38%  Similarity=0.506  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          645 YSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                      .+.||.+|..+|+.+.|.+.+++++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            36799999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=84.29  E-value=23  Score=29.55  Aligned_cols=74  Identities=14%  Similarity=0.103  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hh----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYH---PD----TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      +..+|...++.+++-.++-.|++|+.+.+++.....   .+    ......+||..+..+|+.+-.+.|++-|-+....+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            345788888999999999999999999888742211   11    12256799999999999999999999887655444


Q ss_pred             c
Q 004811          676 L  676 (729)
Q Consensus       676 ~  676 (729)
                      .
T Consensus        84 i   84 (140)
T PF10952_consen   84 I   84 (140)
T ss_pred             c
Confidence            3

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=84.24  E-value=23  Score=29.54  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=52.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      ..+|...+..+++-.++-+|++|+.+.++....+.       .-......+||..+..+|+.+-.++|++-|-+......
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi   84 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI   84 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Confidence            45677777777888888888888877766631111       11234567899999999999999999988877655544


Q ss_pred             C
Q 004811          509 P  509 (729)
Q Consensus       509 ~  509 (729)
                      |
T Consensus        85 P   85 (140)
T PF10952_consen   85 P   85 (140)
T ss_pred             c
Confidence            3

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=83.48  E-value=34  Score=30.89  Aligned_cols=193  Identities=13%  Similarity=0.027  Sum_probs=113.7

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH-----cCChHHHHHHHHHh
Q 004811          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS-----LGQYNEAIPVLEQS  291 (729)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a  291 (729)
                      +...+.....++..+-...+       -|+.|.+++...-+....   +...+.+|..++.     .++...|++.|..+
T Consensus        30 ~EK~Pe~C~lLgdYlEgi~k-------nF~~A~kv~K~nCden~y---~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~a   99 (248)
T KOG4014|consen   30 EEKRPESCQLLGDYLEGIQK-------NFQAAVKVFKKNCDENSY---PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIA   99 (248)
T ss_pred             ccCCchHHHHHHHHHHHHHH-------HHHHHHHHHHhcccccCC---cHHHHHhhhhhhcccCCCccCHHHHHHHHHHH
Confidence            33344455555544333323       367777777665544443   4446666665543     45788999999998


Q ss_pred             cccchhhccccchHHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004811          292 IEIPVIEEGQEHALAKFAGHMQLGDTYAML-----G--QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL  364 (729)
Q Consensus       292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  364 (729)
                      -...           ...+...+|.+++.-     +  +..+|+.++.++-.+          ....+.+.|...|..- 
T Consensus       100 C~~n-----------~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g-  157 (248)
T KOG4014|consen  100 CDAN-----------IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGG-  157 (248)
T ss_pred             hccC-----------CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhcc-
Confidence            8753           223466677776542     2  367888888887766          4556777777666432 


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004811          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (729)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (729)
                       .+++       ....|....+  +       ..+..+....+.+.|.++-.+|..+        ....+..++.++|..
T Consensus       158 -~~k~-------~t~ap~~g~p--~-------~~~~~~~~~kDMdka~qfa~kACel--------~~~~aCAN~SrMykl  212 (248)
T KOG4014|consen  158 -KEKF-------KTNAPGEGKP--L-------DRAELGSLSKDMDKALQFAIKACEL--------DIPQACANVSRMYKL  212 (248)
T ss_pred             -chhh-------cccCCCCCCC--c-------chhhhhhhhHhHHHHHHHHHHHHhc--------CChHHHhhHHHHHHc
Confidence             2221       1112222221  1       1233445567888888888777542        233555666666643


Q ss_pred             ----cCCHHHHHHHHHHHHHHHHHhc
Q 004811          445 ----LSRYDEAGFAYQKALTAFKTNK  466 (729)
Q Consensus       445 ----~g~~~~A~~~~~~al~~~~~~~  466 (729)
                          -.+-++|..+-.+|.++.+...
T Consensus       213 GDGv~Kde~~Aekyk~rA~e~~~e~~  238 (248)
T KOG4014|consen  213 GDGVPKDEDQAEKYKDRAKEIMEELR  238 (248)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHH
Confidence                2367889999999998876654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=82.65  E-value=1.9  Score=40.05  Aligned_cols=55  Identities=20%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      .....++.+.|.++|.+++.+        -|+....|+.+|....+.|+++.|...|++.+++
T Consensus         4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            345678999999999999999        8999999999999999999999999999999986

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.48  E-value=8.4  Score=28.69  Aligned_cols=48  Identities=25%  Similarity=0.202  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  269 (729)
                      +..+...|..+-..|+ +++|+.+|.+|+..+-......+++..-..+.
T Consensus         5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~   52 (69)
T PF04212_consen    5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQALR   52 (69)
T ss_dssp             HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            4567788888888997 99999999999999877655444444444433

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.30  E-value=20  Score=36.97  Aligned_cols=148  Identities=18%  Similarity=0.139  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhC
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG--VPPEEIASGLTDVSSIYESMNE---LEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~  550 (729)
                      .++..|........|++|+.++-.|-+.+....+.  ..-..++..-..+.++|+.+.+   ..+|..-+..+-+-+...
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            44455666666677777777766665554332000  0011123334445667776654   334554444444444333


Q ss_pred             CCCC------------C---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH------H-
Q 004811          551 PGQQ------------S---TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG------L-  608 (729)
Q Consensus       551 ~~~~------------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la------~-  608 (729)
                      +|..            +   .+...+..-|.+.+.+|+-++|.++++.+...+....-.+...  ..+..+|      . 
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~l--sllv~mGfeesdaRl  322 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETL--SLLVGMGFEESDARL  322 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHH--HHHHHcCCCchHHHH
Confidence            3322            1   2334556679999999999999999999998877664443221  2222222      1 


Q ss_pred             -HHHHcCCHHHHHHHHHH
Q 004811          609 -ACVQRYSINEAVELFEE  625 (729)
Q Consensus       609 -~~~~~g~~~~A~~~~~~  625 (729)
                       +-.-.|+.+.|..+..+
T Consensus       323 aLRsc~g~Vd~AvqfI~e  340 (568)
T KOG2561|consen  323 ALRSCNGDVDSAVQFIIE  340 (568)
T ss_pred             HHHhccccHHHHHHHHHH
Confidence             11224677777776643

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.70  E-value=11  Score=28.68  Aligned_cols=50  Identities=20%  Similarity=0.111  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  270 (729)
                      .+..+...|...-..|+ |++|+.+|.+|+..+-......+++.....+..
T Consensus         5 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~   54 (75)
T cd02678           5 KAIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESIRA   54 (75)
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            34567788888888886 999999999999999887655555554444433

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PRK09169 hypothetical protein; Validated

Probab=80.76  E-value=1.8e+02  Score=37.41  Aligned_cols=472  Identities=11%  Similarity=0.061  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcC
Q 004811          243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG  322 (729)
Q Consensus       243 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  322 (729)
                      ..+.+|...+-......+......--..++.++..+++|.+...+-.-+..+......... .....--..+++++..+.
T Consensus       263 ~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~-l~~~~~aQ~vAN~LNALS  341 (2316)
T PRK09169        263 EACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG-LLQAMNAQAVANALNALS  341 (2316)
T ss_pred             hHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh-hhhhCCHHHHHHHHHHHh


Q ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004811          323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC  402 (729)
Q Consensus       323 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~  402 (729)
                      ++.+...+-.-+..+...+..........--..++.++.-..+|.+...+-.-+..+..............--..++++.
T Consensus       342 KWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaL  421 (2316)
T PRK09169        342 KWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANAL  421 (2316)
T ss_pred             cCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHH


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811          403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDC--SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL  480 (729)
Q Consensus       403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  480 (729)
                      ....++..+..+-.-+..+.......+.....+.  .++.++..++++.+...+-..+..++..+...-.......-..+
T Consensus       422 nALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~l  501 (2316)
T PRK09169        422 NALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGL  501 (2316)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHH


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004811          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (729)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (729)
                      ++++....++.+...+-.-+..+..... ..........-..+++++....++.+--.+-..+..+..............
T Consensus       502 AN~LnALsKwp~~~~c~~aA~aLA~rla-~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~  580 (2316)
T PRK09169        502 ANALNALSKWPDSDACRAAAEALADRLA-QDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSAL  580 (2316)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHh-cChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhcc


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          561 -EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (729)
Q Consensus       561 -~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (729)
                       -..+++++....++...-.+.+-+..+...+...........-..++.++....++.+...+-..+..+...+......
T Consensus       581 naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l  660 (2316)
T PRK09169        581 NAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGL  660 (2316)
T ss_pred             CHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchh


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHh
Q 004811          640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS------RKAQSLETLLD  713 (729)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~------A~~~~l~~al~  713 (729)
                      -..-.-..+++++..+.++.+.-.+-..+..+...+....++.....-..++.++....++.+      |. ..+-..|.
T Consensus       661 ~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~-~~LA~rL~  739 (2316)
T PRK09169        661 PRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAA-EALAGRLA  739 (2316)
T ss_pred             HHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHH-HHHHHHHh


Q ss_pred             hccc
Q 004811          714 ANSR  717 (729)
Q Consensus       714 ~~p~  717 (729)
                      .+++
T Consensus       740 ~~~~  743 (2316)
T PRK09169        740 ADAD  743 (2316)
T ss_pred             cChH

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.19  E-value=29  Score=37.43  Aligned_cols=51  Identities=20%  Similarity=0.267  Sum_probs=40.4

Q ss_pred             HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (729)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (729)
                      .+..+.|+++.|..+..++-...              -|..||.+....|++..|.++|.++..+
T Consensus       645 elal~lgrl~iA~~la~e~~s~~--------------Kw~~Lg~~al~~~~l~lA~EC~~~a~d~  695 (794)
T KOG0276|consen  645 ELALKLGRLDIAFDLAVEANSEV--------------KWRQLGDAALSAGELPLASECFLRARDL  695 (794)
T ss_pred             hhhhhcCcHHHHHHHHHhhcchH--------------HHHHHHHHHhhcccchhHHHHHHhhcch
Confidence            34567788898888777654331              2889999999999999999999988665

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.05  E-value=7.8  Score=40.28  Aligned_cols=72  Identities=14%  Similarity=0.043  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (729)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (729)
                      ++..|.+++.-+|+|..|++.++-.---.+.++..-.+-...+++.+|-+|..+++|.+|++.|...+-...
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~  195 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ  195 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999999999988765321111222222345666889999999999999999999988876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	729
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		6e-10
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		8e-05
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		9e-10
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		7e-05
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		1e-08
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		1e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		7e-05

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL   +   G++HPAVA+    LA +Y + GK
Sbjct: 41  DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK +    P ++A  L++++ + ++  + E+     ++AL+IY  
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G     VA  +  +   Y   G Y D+   +K  +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
           LN + L    +    EA  L  +A +I E+  G  HP      +NLA  Y   G+  +A 
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700
            + +  + IRE+ LG  +PDV  +   LA L +  G+ 
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA 143

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL   +   G++HPAVA+    LA +Y + GK
Sbjct: 41  DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK +    P ++A  L +++ + ++  + E+     ++AL+IY  
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G     VA  +  +   Y   G Y D+   +K  +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
           LN + L    +    EA  L  +A +I E+  G  HP      +NLA  Y   G+  +A 
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700
            + +  + IRE+ LG  +PDV  +   LA L +  G+ 
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 386 PASLEEAADRRLMGLICE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDT 441
           PA L     R L  L+ +  ++G +E A  L    L  +   +     +VA++   +   
Sbjct: 24  PARL-----RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV 78
Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           Y   ++Y +A      AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL
Sbjct: 79  YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138
Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGI 560
            I EK V G    ++A  L +++ + ++  + E+     Q+AL+IY    G     VA  
Sbjct: 139 EIREK-VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197
Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISK 587
           +  +   Y   G +  +   +K  +++
Sbjct: 198 KNNLASCYLKQGKFKQAETLYKEILTR 224

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 6/208 (2%)
Query: 515 EIASGLTDVSSI---YESMNELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYM 570
           EI + L  + ++   Y S    E A+ L ++AL+      G     VA +   + ++Y  
Sbjct: 22  EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 81
Query: 571 LGNYSDSYDSFKNAIS-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
              Y D+ +   +A++ + + +G+   A     LN + +   +R    EA  L + A  I
Sbjct: 82  QNKYKDAANLLNDALAIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689
            E+  G  HPD     +NLA      G+ ++     +  + I + KLG  +P+V   K  
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 690 LAELLKEAGRVRSRKAQSLETLLDANSR 717
           LA    + G+ +  +    E L  A+ R
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHER 228

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A    ++G+ Y     YDEA   YQKAL        E +P  A  +  L + Y + G   
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDA 550
           E+  Y + AL +Y        P   A    ++ + Y    + ++AI+  QKAL++Y N+A
Sbjct: 61  EAIEYYQKALELY--------PNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111
Query: 551 PGQQS 555
             +Q+
Sbjct: 112 EAKQN 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	729
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-42
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-29
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-38
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-36
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-23
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-30
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-23
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-20
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-18
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-18
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-23
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	6e-13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-11
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	7e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-09
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	8e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	4e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	8e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-04

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  158 bits (401), Expect = 2e-42
 Identities = 67/421 (15%), Positives = 132/421 (31%), Gaps = 42/421 (9%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
           + L +     C  G     +   E ++++     G E      A + QLG+ Y  L    
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
            +L  +   L + + +  +      +    L         F EA   CQ  LDI ++   
Sbjct: 65  KALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
                EA     +G +   KG          +        D                   
Sbjct: 123 KVG--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA------------------ 162

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
                A   Y++ L+        +  A    F  L + +   G  R++    E  L I +
Sbjct: 163 --LQAAVDFYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           +   G    E     +++ + Y  + E E A +  +K L +       ++  A     +G
Sbjct: 219 E--FGDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLG 274

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625
             Y +L +Y  + D     ++  + + +R     G A   +G A     + ++A+   E+
Sbjct: 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 626 ARSILEQECGPY-----HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680
              I  +            +   +   L  +Y     +      ++  +     KLG  +
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRH 392

Query: 681 P 681
            
Sbjct: 393 S 393

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  119 bits (301), Expect = 4e-29
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 30/303 (9%)

Query: 391 EAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
              +  L G      GD  A +      +     +  +    ++++   +G+ Y  L  Y
Sbjct: 8   SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLHDY 63

Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK-- 506
            +A   +   LT  +     +    A     L +     G   E+   C+  L I  +  
Sbjct: 64  AKALEYHHHDLTLAR--TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121

Query: 507 PVPGV---------------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551
              G                                E  + L+ A+   ++ L +     
Sbjct: 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL- 180

Query: 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV 611
           G ++        +G  +Y+LGN+ D+  + +  +   +  G++ +     A + +G A +
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGNAYI 238

Query: 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671
                  A E +++   +  Q              +L  TY  +   + AI+     + I
Sbjct: 239 FLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296

Query: 672 REE 674
            +E
Sbjct: 297 AQE 299

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  106 bits (267), Expect = 9e-25
 Identities = 61/352 (17%), Positives = 113/352 (32%), Gaps = 42/352 (11%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +  KALE     L  A++       +           +      LG ++EAI   ++ ++
Sbjct: 62  DYAKALEYHHHDLTLARTI----GDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLD 115

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG-------------LEVQKQ 340
           I   E   +   A       LG+ Y   G+          G             ++  ++
Sbjct: 116 I-SRELNDKVGEA--RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172

Query: 341 VLG-----ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
            L            G     L   H     F +A    +  L I K+ G  A+  E    
Sbjct: 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERRAY 230

Query: 396 RLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             +G      G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A   
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDY 289

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           + K L   +  +  +          L + Y   G   ++  + E  L I  + V     E
Sbjct: 290 HLKHLAIAQ--ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE-VGDKSGE 346

Query: 515 E-----IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561
                 ++     +   Y + N +      +  +L       G++ ++  +E
Sbjct: 347 LTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENME 398

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 90.8 bits (226), Expect = 1e-19
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 23/277 (8%)

Query: 215 LDKPGLGPLLLKQARELISSGDNPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVI 271
             K    P             D  Q A++     L       +G               +
Sbjct: 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT--ALGDR----AAQGRAFGNL 193

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
              +  LG + +A+   EQ + I   E G + A  +   +  LG+ Y  LG+ E +   Y
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERR--AYSNLGNAYIFLGEFETASEYY 250

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              L + +Q+         ++C  L   +     + +A  +    L I ++        E
Sbjct: 251 KKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG--E 306

Query: 392 AADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAE------VASVDCSIGDTYLS 444
                 +G      G+H+ A+        ++    D+  E      ++ +   +G +Y +
Sbjct: 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
            +           +L   +   G  H       ++L 
Sbjct: 367 NNSIMSENTEIDSSLNGVRPKLGRRHSMENMELMKLT 403

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 9/134 (6%)

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609
            PG         A  G      G+       F+ A+     +G           +Q+G A
Sbjct: 1   GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAV----QVGTEDLKTLSAIYSQLGNA 56

Query: 610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669
               +   +A+E      ++                 NL  T   +G  D+AI   +  +
Sbjct: 57  YFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114

Query: 670 GIREE---KLGTAN 680
            I  E   K+G A 
Sbjct: 115 DISRELNDKVGEAR 128

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  145 bits (369), Expect = 4e-38
 Identities = 56/396 (14%), Positives = 125/396 (31%), Gaps = 49/396 (12%)

Query: 237 NPQKAL---ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +        +   +     + G++      + + L +     C+ G     +   + +I+
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSS------MCLELALEGERLCNAGDCRAGVAFFQAAIQ 76

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
                      L+  A + QLG+ Y  LG    ++  +   L + K +         ++ 
Sbjct: 77  ---AGTEDLRTLS--AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR--LGEAKSS 129

Query: 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413
             L        +F EA   C+  L + +  G   S  E      +G +   KG H     
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS--EGRALYNLGNVYHAKGKHLGQRN 187

Query: 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473
                                                A   YQ+ L   +     +  A 
Sbjct: 188 PGKFGDDVK-----------------------EALTRAVEFYQENLKLMR--DLGDRGAQ 222

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
                 L + Y   G  + +  + +  LRI  +   G    E     +++ + +  + + 
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIARE--FGDRAAE-RRANSNLGNSHIFLGQF 279

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
           E A +  ++ L +  +  G++   A     +G  Y +L  ++ + +     ++  + +G+
Sbjct: 280 EDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           R       A   +G A         A++  E+   +
Sbjct: 339 RIGE--ARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  143 bits (363), Expect = 3e-37
 Identities = 60/382 (15%), Positives = 131/382 (34%), Gaps = 44/382 (11%)

Query: 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363
           A A+    + LG         + +          Q+    +    +        E    A
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNS---------QQGSGSDGGSSMCLELALEGERLCNA 61

Query: 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMT 421
                   F Q A+    ++        +A    +G      GD+  A+++    L    
Sbjct: 62  GDCRAGVAFFQAAIQAGTEDLR----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
            + +      A    ++G+T   + R+DEA    ++ LT  +  +  +  +       L 
Sbjct: 118 SMNDRLG--EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR--QLGDRLSEGRALYNLG 173

Query: 482 DMYNRTGK-----------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
           ++Y+  GK                 L  +  + +  L++    +             ++ 
Sbjct: 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD-LGDRG--AQGRACGNLG 230

Query: 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584
           + Y  + + + AI+  Q+ L+I  +  G ++      + +G  +  LG + D+ + +K  
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289

Query: 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
           ++    +GER+      +   +G      +  N A+E      +I  QE G         
Sbjct: 290 LALAVELGEREVE--AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA-QELG-DRIGEARA 345

Query: 645 YSNLAGTYDAIGRLDDAIEILE 666
             +L   + AIG  + A++  E
Sbjct: 346 CWSLGNAHSAIGGHERALKYAE 367

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 83.1 bits (206), Expect = 4e-17
 Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 10/187 (5%)

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G      +  +   +             +   L        +  +    +   Q A++  
Sbjct: 22  GSGGGGTNSHDGNSQQGSG---SDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG 78

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607
            +      T++ I +Q+G  Y+ LG+Y+ +    K+ ++  +++ +R       +   +G
Sbjct: 79  TED---LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSGNLG 133

Query: 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667
                    +EA    E   ++  Q              NL   Y A G+        +F
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191

Query: 668 VVGIREE 674
              ++E 
Sbjct: 192 GDDVKEA 198

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 520 LTDVSSIYES-----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
           ++ +S+  E+     +              +  + +    S++    A  G      G+ 
Sbjct: 6   MSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGS-DGGSSMCLELALEGERLCNAGDC 64

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
                 F+ AI      G           +Q+G A       N+A++  +   ++ +   
Sbjct: 65  RAGVAFFQAAI----QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                       NL  T   +GR D+A    E
Sbjct: 121 D--RLGEAKSSGNLGNTLKVMGRFDEAAICCE 150

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  139 bits (353), Expect = 1e-36
 Identities = 59/366 (16%), Positives = 117/366 (31%), Gaps = 39/366 (10%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAG-HMQLGDTYAMLGQLEN 326
           L +     C  G     +   E ++++          L   +  + QLG+ Y  L     
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIYSQLGNAYFYLHDYAK 61

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +L  +   L + + +  +      +    L         F EA   CQ  LDI ++    
Sbjct: 62  ALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-- 117

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
             + EA     +G +   KG                                       +
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF--------------------PEDVRN 157

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   Y++ L+        +  A    F  L + +   G  R++    E  L I ++
Sbjct: 158 ALQAAVDLYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
              G    E     +++ + Y  + E E A +  +K L +       ++  A     +G 
Sbjct: 216 --FGDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGN 271

Query: 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626
            Y +L +Y  + D     ++  + + +R     G A   +G A     + ++A+   E+ 
Sbjct: 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGE--GRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 627 RSILEQ 632
             I  +
Sbjct: 330 LEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  120 bits (304), Expect = 5e-30
 Identities = 53/345 (15%), Positives = 113/345 (32%), Gaps = 40/345 (11%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           L  +   L  SGD  +  +        + ++G        L      +   Y  L  Y +
Sbjct: 8   LALEGERLCKSGDC-RAGVSFFE---AAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAK 61

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV- 341
           A+      + +   I +    A A       LG+T  +LG  + +++C    L++ +++ 
Sbjct: 62  ALEYHHHDLTLARTIGDQLGEAKA----SGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 342 ------------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
                              G++    G          V+      A    +  L +    
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN-ALQAAVDLYEENLSLVTAL 176

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTY 442
           G  A+  +      +G      G+   A+        +     D+ AE      ++G+ Y
Sbjct: 177 GDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RRAYSNLGNAY 233

Query: 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502
           + L  ++ A   Y+K L   +  + ++    A     L + Y       ++  Y    L 
Sbjct: 234 IFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291

Query: 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           I ++ +              + + Y ++   +QA+   +K L+I 
Sbjct: 292 IAQE-LKDRI--GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  120 bits (303), Expect = 6e-30
 Identities = 47/298 (15%), Positives = 102/298 (34%), Gaps = 36/298 (12%)

Query: 391 EAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
              +  L G      GD  A +      +     +  +    ++++   +G+ Y  L  Y
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLHDY 59

Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508
            +A   +   LT  +T    +    A     L +     G   E+   C+  L I  + +
Sbjct: 60  AKALEYHHHDLTLARTIG--DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-L 116

Query: 509 PGVPPEEIASGLTDVSSIYESM--------------------NELEQAIKLLQKALKIYN 548
                   A  L ++ ++Y +                     N L+ A+ L ++ L +  
Sbjct: 117 NDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174

Query: 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
              G ++        +G  +Y+LGN+ D+  + +  +   +  G++ +     A + +G 
Sbjct: 175 AL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGN 231

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           A +       A E +++   +  Q              +L  TY  +   + AI+   
Sbjct: 232 AYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 99.6 bits (249), Expect = 6e-23
 Identities = 57/295 (19%), Positives = 100/295 (33%), Gaps = 42/295 (14%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +  KALE     L  A++       +           +      LG ++EAI   ++ ++
Sbjct: 58  DYAKALEYHHHDLTLART----IGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLD 111

Query: 294 IPV-IEEGQEHALAKFAGHMQLGDTYAMLGQ--------------------LENSLMCYT 332
           I   + +    A A       LG+ Y   G+                    L+ ++  Y 
Sbjct: 112 ISRELNDKVGEARA----LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167

Query: 333 TGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
             L +    LG+     G     L   H     F +A    +  L I K+ G  A+  E 
Sbjct: 168 ENLSLVTA-LGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ER 223

Query: 393 ADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451
                +G      G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKA 282

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
              + K L   +  + ++          L + Y   G   ++  + E  L I  +
Sbjct: 283 IDYHLKHLAIAQ--ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 7/160 (4%)

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
               L           +    +   + A+++  +      T++ I +Q+G  Y+ L +Y+
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHDYA 60

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + +   + ++  R IG++       A   +G       + +EA+   +    I  +   
Sbjct: 61  KALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-- 116

Query: 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675
                      NL   Y A G+        +      + +
Sbjct: 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
                +   Y  LG++  A    ++++ +   +       A       LG+TY +L   E
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEA--QSCYSLGNTYTLLQDYE 280

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
            ++  +   L + +++        G  C  L  A+       +A  F +  L+I ++ G
Sbjct: 281 KAIDYHLKHLAIAQELKDR--IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  137 bits (347), Expect = 5e-36
 Identities = 63/342 (18%), Positives = 125/342 (36%), Gaps = 55/342 (16%)

Query: 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEV 431
               +++   G             + +   ++G +E A+      L  +   +     +V
Sbjct: 9   SGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV 68

Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A++   +   Y   ++Y +A      AL   +   G++HPAVA+    LA +Y + GK +
Sbjct: 69  ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128

Query: 492 ESKSYCENALRIYEKPVPGVPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
           E++  C+ AL I EK V G   +  ++A  L +++ + ++  + E+     Q+AL+IY  
Sbjct: 129 EAEPLCKRALEIREK-VLG--KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185

Query: 550 APGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
             G     VA  +  +   Y   G +                                  
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKF---------------------------------- 211

Query: 609 ACVQRYSINEAVELFEEARSIL-EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667
                    +A  L++E  +   E+E G    +   ++ +     +  G+  D     E 
Sbjct: 212 --------KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE- 262

Query: 668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709
             G   +     +P V    + L  L +  G+     A++LE
Sbjct: 263 -YGGWYKACKVDSPTVTTTLKNLGALYRRQGKF--EAAETLE 301

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  127 bits (322), Expect = 1e-32
 Identities = 58/307 (18%), Positives = 119/307 (38%), Gaps = 9/307 (2%)

Query: 245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH- 303
                ++      G      +  LH +   Y S G+Y  A+P+ +Q++E      G +H 
Sbjct: 7   HSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP 66

Query: 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363
            +A       L   Y    + +++       L ++++ LG+  P V  T   LA  + + 
Sbjct: 67  DVA--TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 124

Query: 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMT 421
            ++ EA+  C+ AL+I +        + A     + L+C+ +G +E    +    L    
Sbjct: 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGENHPAVASVFVRL 480
                 D  VA    ++   YL   ++ +A   Y++ LT A +   G        +++  
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
            +     GK ++  S+ E            V    + + L ++ ++Y    + E A  L 
Sbjct: 245 EEREECKGKQKDGTSFGEYGGWYK---ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301

Query: 541 QKALKIY 547
           + A++  
Sbjct: 302 EAAMRSR 308

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  126 bits (319), Expect = 3e-32
 Identities = 64/366 (17%), Positives = 108/366 (29%), Gaps = 93/366 (25%)

Query: 314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373
           L   YA  G+ E ++      LE  ++  G   P V      LA  +    ++ +A    
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL-VLASMTMIANDQDAEVA 432
             AL I +                     +T G      +H  V A++            
Sbjct: 93  NDALAIRE---------------------KTLGK-----DHPAVAATLN----------- 115

Query: 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
               ++   Y    +Y EA    ++AL   +   G++HP VA     LA +    GK  E
Sbjct: 116 ----NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 493 SKSYCENALRIYEKPVPGVPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYN-D 549
            + Y + AL IY+    G  P+   +A    +++S Y    + +QA  L ++ L   +  
Sbjct: 172 VEYYYQRALEIYQT-KLG--PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228

Query: 550 APGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
             G        I           G                                    
Sbjct: 229 EFGSVDDENKPIWMHAEEREECKGKQ---------------------------------- 254

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668
                    +     E       + C    P       NL   Y   G+ + A  + E  
Sbjct: 255 --------KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304

Query: 669 VGIREE 674
           +  R++
Sbjct: 305 MRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  124 bits (313), Expect = 2e-31
 Identities = 56/270 (20%), Positives = 94/270 (34%), Gaps = 25/270 (9%)

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
                   +    G   PA       L   Y   G+   +   C+ AL   EK   G   
Sbjct: 7   HSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-TSGHDH 65

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLG 572
            ++A+ L  ++ +Y   N+ + A  LL  AL I     G+    VA     + V+Y   G
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125

Query: 573 NYSDSYDSFKNAIS-KLRAIGERKSAFFG-------VALNQMGLACVQ--RYSINEAVEL 622
            Y +       A     RA+  R+    G         LN + L C    +Y   E    
Sbjct: 126 KYKE-------AEPLCKRALEIREKVL-GKDHPDVAKQLNNLALLCQNQGKY--EEVEYY 175

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK-LGTANP 681
           ++ A  I + + GP  P+     +NLA  Y   G+   A  + + ++    E+  G+ + 
Sbjct: 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235

Query: 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
           +         E  +  G  + +   S    
Sbjct: 236 ENKPIWMHAEEREECKG--KQKDGTSFGEY 263

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIP-VIEEGQEHALAKFAGHMQLGDTYAMLGQL 324
              + +A+ Y   G++ +A  + ++ +      E G      K    M   +     G+ 
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK-PIWMHAEEREECKGKQ 254

Query: 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381
           ++             +      P V  T + L   + +  +F  A+   + A+   K
Sbjct: 255 KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  130 bits (330), Expect = 6e-34
 Identities = 62/316 (19%), Positives = 116/316 (36%), Gaps = 51/316 (16%)

Query: 398 MGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
                       +A+      L  +   +     +VA++   +   Y   ++Y EA    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
             AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL I EK V G    +
Sbjct: 67  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-VLGKFHPD 125

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNY 574
           +A  L +++ + ++  + E+     ++AL+IY    G     VA  +  +   Y   G Y
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA-RSILEQE 633
                                                      +A  L++E      E+E
Sbjct: 186 Q------------------------------------------DAETLYKEILTRAHEKE 203

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693
            G  + D   ++ +     ++  +  D+    E   G   +     +P V+   R L  L
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE--YGSWYKACKVDSPTVNTTLRSLGAL 261

Query: 694 LKEAGRVRSRKAQSLE 709
            +  G++    A +LE
Sbjct: 262 YRRQGKL--EAAHTLE 275

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  118 bits (298), Expect = 9e-30
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 17/287 (5%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-----ALAKFAGHMQLGDTYAMLG 322
            H        L     A+P+ +Q++E      G +H      L        L   Y    
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLN------ILALVYRDQN 57

Query: 323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382
           + + +       L ++++ LG+  P V  T   LA  + +  ++ EA+  C+ AL+I + 
Sbjct: 58  KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117

Query: 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGD 440
                  + A     + L+C+ +G  E    +    L          D  VA    ++  
Sbjct: 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNK-GENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
            YL   +Y +A   Y++ LT     + G  +     +++   +      K R+S  Y E 
Sbjct: 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237

Query: 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
                      V    + + L  + ++Y    +LE A  L   A + 
Sbjct: 238 GSWYK---ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 92.2 bits (230), Expect = 8e-21
 Identities = 50/243 (20%), Positives = 82/243 (33%), Gaps = 54/243 (22%)

Query: 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526
           G +H              +       +   C+ AL   EK   G    ++A+ L  ++ +
Sbjct: 2   GSSHH--------HHHHSSGLVPRGSAVPLCKQALEDLEK-TSGHDHPDVATMLNILALV 52

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           Y   N+ ++A  LL  AL I     G+    VA     + V+Y   G Y           
Sbjct: 53  YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY----------- 101

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
                                           EA  L + A  I E+  G +HPD     
Sbjct: 102 -------------------------------KEAEPLCKRALEIREKVLGKFHPDVAKQL 130

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           +NLA      G+ ++        + I   +LG  +P+V   K  LA    + G+   + A
Sbjct: 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY--QDA 188

Query: 706 QSL 708
           ++L
Sbjct: 189 ETL 191

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 56.4 bits (137), Expect = 8e-09
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSI-EIPVIEEGQEHALAKFAGHMQ-LGDTYAMLGQLE 325
            + +A+ Y   G+Y +A  + ++ +      E G  +             +      +  
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG--DNKPIWMHAEEREESKDKRR 229

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381
           +S      G     +      P V  T R L   + +  +   A      A    K
Sbjct: 230 DSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  130 bits (329), Expect = 7e-33
 Identities = 77/478 (16%), Positives = 160/478 (33%), Gaps = 95/478 (19%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
            ++ A     +G + + A    ++  +         P  +    L ++++I+    + + 
Sbjct: 2   PMELAHREYQAG-DFEAAERHCMQLWRQE-------P--DNTGVLLLLSSIHFQCRRLDR 51

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
           +      +I+  P        A A    +  LG+ Y   GQL+ ++  Y   L +     
Sbjct: 52  SAHFSTLAIKQNP------LLAEA----YSNLGNVYKERGQLQEAIEHYRHALRL----- 96

Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402
               P   +    LA A V A     A +    AL  + D            R  +G + 
Sbjct: 97  ---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL--------YCVRSDLGNLL 145

Query: 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462
           +  G  E A    + A    I    +   A    ++G  + +      A   ++KA+   
Sbjct: 146 KALGRLEEAKACYLKA----IETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAV--- 196

Query: 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522
                   P     ++ L ++         + +    AL +   P         A    +
Sbjct: 197 -----TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SP-------NHAVVHGN 242

Query: 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDS 580
           ++ +Y     ++ AI   ++A+++    P         +A   +       G+ +++ D 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFP---------DAYCNLANALKEKGSVAEAEDC 293

Query: 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640
           +  A+                +LN +     ++ +I EAV L+ +A  +         P+
Sbjct: 294 YNTAL-------RLCPTHAD-SLNNLANIKREQGNIEEAVRLYRKALEV--------FPE 337

Query: 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
               +SNLA      G+L +A+   +  + I        +P   D    +   LKE  
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  108 bits (271), Expect = 2e-25
 Identities = 58/393 (14%), Positives = 124/393 (31%), Gaps = 76/393 (19%)

Query: 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369
           G M+L       G  E +                  +P        L+  H Q  +   +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRS 52

Query: 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQD 428
             F  +A+  +           A     +G + + +G  + A+EH   A    +      
Sbjct: 53  AHFSTLAIKQNPLL--------AEAYSNLGNVYKERGQLQEAIEHYRHA----LRLKPDF 100

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
            +      ++    ++    + A  AY  AL        + +P +  V   L ++    G
Sbjct: 101 IDGYI---NLAAALVAAGDMEGAVQAYVSAL--------QYNPDLYCVRSDLGNLLKALG 149

Query: 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548
           +L E+K+    A+    +P         A   +++  ++ +  E+  AI   +KA+ +  
Sbjct: 150 RLEEAKACYLKAIET--QP-------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 549 DAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606
           +           +A   +G +      +  +  ++  A+               V    +
Sbjct: 201 NFL---------DAYINLGNVLKEARIFDRAVAAYLRAL-------SLSPNHA-VVHGNL 243

Query: 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                ++  I+ A++ +  A  +         P     Y NLA      G + +A +   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYN 295

Query: 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
             + +         P   D    LA + +E G 
Sbjct: 296 TALRL--------CPTHADSLNNLANIKREQGN 320

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  110 bits (277), Expect = 3e-26
 Identities = 46/360 (12%), Positives = 123/360 (34%), Gaps = 24/360 (6%)

Query: 322 GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381
             + ++ +      +  +Q+  E D  +      +   H   L + E  K       + +
Sbjct: 26  FSVPDAEILKAEVEQDIQQM--EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTE 83

Query: 382 DNGSPASLEEAADRRL-------MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
              +  + ++     L        G+    + ++  A+ +   A   +     D E A  
Sbjct: 84  LLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF 143

Query: 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494
              + + Y  + +   + +   +AL  ++ +   +   + S+FV +A  Y+      ++ 
Sbjct: 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV-IAGNYDDFKHYDKAL 202

Query: 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554
            + E AL +    +       IA  L ++++ Y+   + + A++  QKA K+  +     
Sbjct: 203 PHLEAALELAMD-IQNDR--FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614
             +  +   +       G    ++   +  +  + A   +      + L  +    V   
Sbjct: 260 --LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317

Query: 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674
            I++ +  FE+            H        + A  +++    + A      V+  +E+
Sbjct: 318 KIHDLLSYFEKKN---------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  109 bits (275), Expect = 4e-26
 Identities = 53/328 (16%), Positives = 107/328 (32%), Gaps = 22/328 (6%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFE-IGANGKPSLELVMC--LHVIAAIYCSLGQ 280
           L+    +L+     P K         +  E I    K    L+    L           +
Sbjct: 57  LMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKE 116

Query: 281 YNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339
           Y EAI    ++ +  P + +  E A      H ++ + Y  + Q   S+      L++ +
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399
                   R  ++   +A  +     + +A    + AL++  D  +      A     + 
Sbjct: 173 NHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF--IAISLLNIA 229

Query: 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
              +  GD + A+EH    +  +        +  V   +  T     +  +A    ++ L
Sbjct: 230 NSYDRSGDDQMAVEHF-QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519
                   + +  +      L  +Y  T   R+      + L  +EK         I + 
Sbjct: 289 DHITARSHKFYKELFLF---LQAVYKETVDERK----IHDLLSYFEK---KNLHAYIEAC 338

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIY 547
               ++++ES    EQA    +K LK  
Sbjct: 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQ 366

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  100 bits (250), Expect = 7e-23
 Identities = 38/269 (14%), Positives = 78/269 (28%), Gaps = 15/269 (5%)

Query: 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK- 463
           +     A          +   ++D ++      +   +  +  Y E G  Y    T  + 
Sbjct: 25  QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84

Query: 464 ------TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
                   K                      +  E+  Y   A +     V      E A
Sbjct: 85  LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDI--EKA 141

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
                V+  Y  M +   ++  + +AL IY + P            +   Y    +Y  +
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637
               + A+     I   +     ++L  +  +  +      AVE F++A  +  ++    
Sbjct: 202 LPHLEAALELAMDIQNDRF--IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
            P        L+ T    G+   A + +E
Sbjct: 260 LPKV---LFGLSWTLCKAGQTQKAFQFIE 285

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 91.8 bits (228), Expect = 5e-20
 Identities = 26/270 (9%), Positives = 78/270 (28%), Gaps = 17/270 (6%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
              +A+       ++ +        +E       +A  Y  + Q + ++  + Q+++I  
Sbjct: 116 EYVEAIGYYR---EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
                            +   Y      + +L      LE+   +  +    +  +   +
Sbjct: 173 NHPLYSIRTI--QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND--RFIAISLLNI 228

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
           A ++ ++     A +  Q A  + ++               +       G  + A + + 
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPD---LLPKVLFGLSWTLCKAGQTQKAFQFI- 284

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
              +  I          +   +   Y       +        L+ F+  K   H  + + 
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERK----IHDLLSYFE--KKNLHAYIEAC 338

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A ++  +    ++ ++    L+  E 
Sbjct: 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQED 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 15/235 (6%)

Query: 236 DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295
                ++   L+A   ++   +   S+  +  L VIA  Y     Y++A+P LE ++E+ 
Sbjct: 155 KQTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL- 211

Query: 296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355
            ++   +  +A     + + ++Y   G  + ++  +    +V ++ + +  P+       
Sbjct: 212 AMDIQNDRFIAIS--LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK---VLFG 266

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           L+    +A Q  +A +F +  LD           E     + +      +      L + 
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
                     +  A + +   S    + S   +++A   Y+K L A +       
Sbjct: 327 -------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 79.5 bits (196), Expect = 5e-16
 Identities = 37/264 (14%), Positives = 71/264 (26%), Gaps = 16/264 (6%)

Query: 420 MTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVA--S 475
              I + +   V      I + Y  +      +A     +     +  + +    +    
Sbjct: 4   SQAIPSSR---VGV---KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSL 57

Query: 476 VFVRLADM--YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
           +  R   M  Y   GK   ++      L   E P   +        L           E 
Sbjct: 58  MCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEY 117

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
            +AI   ++A K            A    ++   YY +     S      A+   +    
Sbjct: 118 VEAIGYYREAEKELPFVSDDIE-KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
                   +L  +          ++A+   E A  +                 N+A +YD
Sbjct: 177 YSIRT-IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYD 233

Query: 654 AIGRLDDAIEILEFVVGIREEKLG 677
             G    A+E  +    +  EK+ 
Sbjct: 234 RSGDDQMAVEHFQKAAKVSREKVP 257

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  110 bits (277), Expect = 3e-26
 Identities = 45/320 (14%), Positives = 109/320 (34%), Gaps = 20/320 (6%)

Query: 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420
           ++ ++  E  +   + L+I K       L E       G+    + ++ +A++    A  
Sbjct: 72  LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131

Query: 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480
            +I      E A     + ++Y  + +   +    ++A   +K ++  N   +    +  
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL-F 190

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
           A  +    +  ++ S+ + A  + E       P+ +   L ++     S ++ E AI   
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247

Query: 541 QKALKIY---NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597
           ++A+ ++   N  P        I      ++Y LG    +++     ++  +  G+    
Sbjct: 248 KRAIAVFEESNILPSLPQAYFLI----TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303

Query: 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
                L  + L+     +I    +  E             + D      ++A  Y     
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESKML---------YADLEDFAIDVAKYYHERKN 354

Query: 658 LDDAIEILEFVVGIREEKLG 677
              A      V  +R+   G
Sbjct: 355 FQKASAYFLKVEQVRQLIQG 374

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  102 bits (255), Expect = 2e-23
 Identities = 39/328 (11%), Positives = 107/328 (32%), Gaps = 17/328 (5%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
           + L  +  +     +    +  L   I+    ++ +   L ++  +   G       +  
Sbjct: 64  LMLEYLEPLEKMRIEEQPRLSDLLLEIDK---KQARLTGLLEYYFNFFRGMYELDQREYL 120

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
           +++  +         V    +    E    ++E++    Q   +  + + A +I+K++ +
Sbjct: 121 SAIKFFKKAESKLIFVKDRIE--KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
             ++       L          +E A+ H   A     A  Q   +     +IG    S 
Sbjct: 179 Y-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
           S+Y++A   +++A+  F+  +    P++   +  +  ++ + GK+ ++  Y    +   +
Sbjct: 238 SQYEDAIPYFKRAIAVFE--ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           K           S         +S+       + +Q             + +      + 
Sbjct: 296 K----AGDVIYLSEF----EFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGE 593
             Y+   N+  +   F       + I  
Sbjct: 347 KYYHERKNFQKASAYFLKVEQVRQLIQG 374

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 16/270 (5%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
               A++      K+       K  +E       ++  Y  + Q   ++    Q+ EI  
Sbjct: 118 EYLSAIKFFK---KAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
             E     L +   H      +  L Q E+++  +     + +    +    +G T   +
Sbjct: 175 EHEAYNIRLLQ--CHSLFATNFLDLKQYEDAISHFQKAYSMAEA-EKQ-PQLMGRTLYNI 230

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
                   Q+ +A  + + A+ + +++    S        L+  I    G  + A E+  
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPS--LPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
              M       D    S    +   YLS    +    A Q      +      +  +   
Sbjct: 289 KG-MAYSQKAGDVIYLSEFEFLKSLYLSGPDEE----AIQGFFDFLE--SKMLYADLEDF 341

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506
            + +A  Y+     +++ +Y     ++ + 
Sbjct: 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 87.6 bits (217), Expect = 1e-18
 Identities = 28/234 (11%), Positives = 82/234 (35%), Gaps = 14/234 (5%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
               +++ A +A + ++   +   ++ L+ C  + A  +  L QY +AI   +++  +  
Sbjct: 158 QTYFSMDYARQAYEIYK--EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM-A 214

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
             E Q   + +      +G       Q E+++  +   + V ++      P + +    +
Sbjct: 215 EAEKQPQLMGRT--LYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLI 270

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
            + H +  +  +A ++    +   +  G        ++   +  +  +  D EA      
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDV---IYLSEFEFLKSLYLSGPDEEAIQGFFD 327

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
                + +    A++      +   Y     + +A   + K     +  +G   
Sbjct: 328 F----LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  105 bits (265), Expect = 3e-26
 Identities = 23/207 (11%), Positives = 61/207 (29%), Gaps = 7/207 (3%)

Query: 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427
           EA  +             PA+   +  R ++G +       + A             +  
Sbjct: 4   EAHDYALAERQAQALLAHPAT--ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61

Query: 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT 487
                     +G        +D A   + +      +   E+  A ++    +A +    
Sbjct: 62  HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHF 120

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G L  ++   E +L   ++          A     +  + +    L +A +   +A  I+
Sbjct: 121 GDLAGARQEYEKSLVYAQQA--DDQVAI-ACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNY 574
            +       V  +  ++  + +   ++
Sbjct: 178 AEL-EDSEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  101 bits (253), Expect = 1e-24
 Identities = 24/209 (11%), Positives = 63/209 (30%), Gaps = 16/209 (7%)

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           EA         A       +    +     L  +Y    +  E+++  +   +  +K   
Sbjct: 4   EAHDYALAERQAQA--LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-- 59

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
           G    E    L  V  +       + A +   +  ++    P      +    ++  +  
Sbjct: 60  GDHTAE-HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
             G+ + +   ++ ++   +   ++ +     A   +G    Q  ++ EA + +  AR I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAI--ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRL 658
             +         L     +      +  L
Sbjct: 177 FAE---------LEDSEAVNELMTRLNGL 196

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 13/200 (6%)

Query: 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
           A ++ +            A  +     +G  Y  + R+DEA  ++Q      +  K  +H
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ--KSGDH 62

Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
            A      ++  +    G    ++        +         P   ++   +V+++    
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS--LPEDPLAASANAYEVATVALHF 120

Query: 531 NELEQAIKLLQKALKIY---NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            +L  A +  +K+L      +D        A     +G +     N  ++   +  A   
Sbjct: 121 GDLAGARQEYEKSLVYAQQADDQVAI----ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

Query: 588 LRAIGERKSAFFGVALNQMG 607
              + + ++      + ++ 
Sbjct: 177 FAELEDSEAV--NELMTRLN 194

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 28/210 (13%), Positives = 70/210 (33%), Gaps = 11/210 (5%)

Query: 240 KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299
           +A + AL   ++  + A+            ++  +Y  + +++EA    +   +    + 
Sbjct: 4   EAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKS 59

Query: 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359
           G   A  +     Q+G    M G  + +  C+    E+    L E           +A  
Sbjct: 60  GDHTAEHR--ALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATV 116

Query: 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA- 418
            +     + A++  + +L   +      +   A   R +G + + + +   A +H + A 
Sbjct: 117 ALHFGDLAGARQEYEKSLVYAQQADDQVA--IACAFRGLGDLAQQEKNLLEAQQHWLRAR 174

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
            +     D    V  +   +         +
Sbjct: 175 DIFAELEDS-EAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 7/149 (4%)

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
           +A        +         +T +G    +G +Y  +  + ++  SF+    + +  G+ 
Sbjct: 4   EAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62

Query: 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654
            +     AL+Q+G+      + + A   F E R +L                 +A     
Sbjct: 63  TAE--HRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALH 119

Query: 655 IGRLDDAIEILEFVVGIREE---KLGTAN 680
            G L  A +  E  +   ++   ++  A 
Sbjct: 120 FGDLAGARQEYEKSLVYAQQADDQVAIAC 148

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  104 bits (262), Expect = 1e-23
 Identities = 54/394 (13%), Positives = 111/394 (28%), Gaps = 60/394 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           I+A Y S G   + I    +++EI P      +H+ A     ++       LG   +++ 
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKP------DHSKA----LLRRASANESLGNFTDAMF 114

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
             +             +P +       A   +      +  +       +   N S AS 
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR----GSQVLPSNTSLASF 170

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
               D  L      T  +++ A   L  A    +     A       +      S   Y 
Sbjct: 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDA----LQRLYSATDEGYLVANDLLTKSTDMYH 226

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
               A                   A         +     L +++   + ++ ++     
Sbjct: 227 SLLSANTVDD--------PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--- 275

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
                   +    ++         ++  K  QKA+ +                  G MY+
Sbjct: 276 -------PNSYIFLALTLADKENSQEFFKFFQKAVDL-------NPEYPPTYYHRGQMYF 321

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           +L +Y ++ + F+ A S        ++ +      Q+     ++    E+   F E +  
Sbjct: 322 ILQDYKNAKEDFQKAQSL-----NPENVY---PYIQLACLLYKQGKFTESEAFFNETKLK 373

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                    P    V +  A      G  D AI+
Sbjct: 374 --------FPTLPEVPTFFAEILTDRGDFDTAIK 399

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  104 bits (260), Expect = 2e-23
 Identities = 53/423 (12%), Positives = 123/423 (29%), Gaps = 66/423 (15%)

Query: 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338
           G +    P + Q   +    + Q +A+         G+ +        ++  Y   +E+ 
Sbjct: 1   GSHMNGEPDIAQLKGLS-PSQRQAYAVQ----LKNRGNHFFTAKNFNEAIKYYQYAIEL- 54

Query: 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
                  DP        ++  ++      +  +F   AL+I  D+       +A  RR  
Sbjct: 55  -------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS------KALLRR-- 99

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
               E+ G+   A+  L + S   +  D D               ++   +E     +  
Sbjct: 100 ASANESLGNFTDAMFDLSVLS---LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156

Query: 459 LTAFKTNKGENHPAVASVFVRLA-DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
            +    +              L     N +     + +   +AL+               
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD-------- 208

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
                      + + L ++  +    L         +   A      G+ +++  N  D+
Sbjct: 209 ------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262

Query: 578 YDSFKNAIS-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
               + +I+                +   + L    + +  E  + F++A  +       
Sbjct: 263 QVLLQESINLHPTPN----------SYIFLALTLADKENSQEFFKFFQKAVDL------- 305

Query: 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
            +P+    Y +    Y  +    +A E  +    +        NP+      +LA LL +
Sbjct: 306 -NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYK 356

Query: 697 AGR 699
            G+
Sbjct: 357 QGK 359

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 46/439 (10%), Positives = 109/439 (24%), Gaps = 94/439 (21%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK---------------FAGHMQLG 315
            A+   SLG + +A+  L         +      + +                    +  
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 316 DTYAMLGQLENSLMCYTTGLEVQ---------------KQVLGETDPRVGETCRYLAEAH 360
                   L +    + + LEV                   L        E      +  
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL 218

Query: 361 VQAL-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419
            ++   +        +   + ++         A      G+    K +   A   L  + 
Sbjct: 219 TKSTDMYHSLLSANTVDDPLRENA--------ALALCYTGIFHFLKNNLLDAQVLLQES- 269

Query: 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479
              I              +  T        E    +QKA+        + +P     +  
Sbjct: 270 ---INLHPTPNSY---IFLALTLADKENSQEFFKFFQKAV--------DLNPEYPPTYYH 315

Query: 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539
              MY      + +K   + A  +   P       E       ++ +     +  ++   
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSL--NP-------ENVYPYIQLACLLYKQGKFTESEAF 366

Query: 540 LQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAI----------SK 587
             +    +   P         E       +    G++  +   +  A             
Sbjct: 367 FNETKLKFPTLP---------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417

Query: 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647
           +  +  + +     +         +++  N A++L  +A  +         P +      
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKF--NAAIKLLTKACEL--------DPRSEQAKIG 467

Query: 648 LAGTYDAIGRLDDAIEILE 666
           LA     + ++D+AIE+ E
Sbjct: 468 LAQLKLQMEKIDEAIELFE 486

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 67/492 (13%), Positives = 127/492 (25%), Gaps = 118/492 (23%)

Query: 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELAL--- 246
             A   PM +R       + ++E      G G  +L     L S        LE++    
Sbjct: 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185

Query: 247 -----RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301
                 A            S      L     +  S   Y+  +        +      +
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL-----RE 240

Query: 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361
             ALA        G  + +   L ++ +     + +         P    +  +LA    
Sbjct: 241 NAALA----LCYTGIFHFLKNNLLDAQVLLQESINL--------HPTP-NSYIFLALTLA 287

Query: 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421
                 E  KF Q A+D+                           ++     H       
Sbjct: 288 DKENSQEFFKFFQKAVDL-------------------------NPEYPPTYYHR------ 316

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
                            G  Y  L  Y  A   +QKA           +P     +++LA
Sbjct: 317 -----------------GQMYFILQDYKNAKEDFQKAQ--------SLNPENVYPYIQLA 351

Query: 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
            +  + GK  ES+++          P        +    T  + I     + + AIK   
Sbjct: 352 CLLYKQGKFTESEAFFNETKLK--FP-------TLPEVPTFFAEILTDRGDFDTAIKQYD 402

Query: 542 KALKIYNDAPG---------QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            A ++                ++T+   ++           ++ +      A        
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC------- 455

Query: 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
           E        A   +    +Q   I+EA+ELFE++  +                     T+
Sbjct: 456 ELDPRSE-QAKIGLAQLKLQMEKIDEAIELFEDSAIL--------ARTMDEKLQAT--TF 504

Query: 653 DAIGRLDDAIEI 664
               ++   +  
Sbjct: 505 AEAAKIQKRLRA 516

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 35/363 (9%), Positives = 95/363 (26%), Gaps = 55/363 (15%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
            K+ ++      +  +    +      + L      +       +A  +L++SI +    
Sbjct: 219 TKSTDMYHSLLSANTVDDPLRE--NAALALCYTGIFHFLKNNLLDAQVLLQESINL---- 272

Query: 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358
                  +    ++ L  T A     +     +   +++        +P    T  +  +
Sbjct: 273 --HPTPNS----YIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQ 318

Query: 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418
            +     +  A++  Q A  ++ +N           +     +   +G    +       
Sbjct: 319 MYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQL--ACLLYKQGKFTESEAFFNET 370

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT------AFKTNKGE--NH 470
                       +  V     +       +D A   Y  A              G     
Sbjct: 371 ----KLKFPT--LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424

Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
             + +             K   +      A  +   P               ++ +   M
Sbjct: 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DP-------RSEQAKIGLAQLKLQM 475

Query: 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIE-AQMGVMYYMLGNYSDSYDSFKNAISKLR 589
            ++++AI+L + +  +   A      +     A+   +   L          +  +++ R
Sbjct: 476 EKIDEAIELFEDSAIL---ARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYR 532

Query: 590 AIG 592
           A G
Sbjct: 533 AKG 535

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  102 bits (256), Expect = 3e-23
 Identities = 61/430 (14%), Positives = 125/430 (29%), Gaps = 62/430 (14%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
           +++A +    GQ   A+  L ++ E+   E   +  +            Y  +G+L +  
Sbjct: 55  NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSP 386
           +       V ++          E         ++    Q   A+   + AL+    N   
Sbjct: 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI--GDTYLS 444
            S    A  RL     +     + A++ L  A    I  + D +   V  ++        
Sbjct: 175 TSGLAIASYRL-----DNWPPSQNAIDPLRQA----IRLNPDNQYLKVLLALKLHKMREE 225

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
                E     ++AL        E  P V  V    A  Y R  +  ++    + AL   
Sbjct: 226 GEEEGEGEKLVEEAL--------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

Query: 505 EKPVPGVPPEEI-----------ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553
                   P              A     ++     M    + ++L+  A+     A   
Sbjct: 278 --------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329

Query: 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-Q 612
              +  + + +  ++ +   Y ++   F+   SK     E       +   + G   + Q
Sbjct: 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQ 384

Query: 613 RYSINEAVELFEEARSI----------------LEQECGPYHPDTLGVYSNLAGTYDAIG 656
               ++A+  F E   I                + +     +         LA   +   
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444

Query: 657 RLDDAIEILE 666
           ++  A E  E
Sbjct: 445 KMQQADEDSE 454

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 96.5 bits (240), Expect = 3e-21
 Identities = 57/395 (14%), Positives = 118/395 (29%), Gaps = 66/395 (16%)

Query: 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE- 336
           L +   ++   E  +      + +E    K      L     + GQ E +L C     E 
Sbjct: 24  LMEGENSLDDFEDKVFYRTEFQNREF---KATMCNLLAYLKHLKGQNEAALECLRKAEEL 80

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
           +Q++   + + R   T    A  +    + S+ Q +      + +   SP  +E      
Sbjct: 81  IQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140

Query: 397 LMG--LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---SRYDEA 451
             G   +      +E A      A    +         +    +      L        A
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKA----LEKKPKNPEFT--SGLAIASYRLDNWPPSQNA 194

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
               ++A+        +N      + ++L  M     +  E +   E AL     P    
Sbjct: 195 IDPLRQAI----RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--AP---- 244

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML 571
               +   L   +  Y   +E ++AI+LL+KAL+   +                 ++  +
Sbjct: 245 ---GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA--------------YLHCQI 287

Query: 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631
           G        ++  + ++  + E         L            I  AV   ++A     
Sbjct: 288 GC------CYRAKVFQVMNLRENGMYGKRKLLEL----------IGHAVAHLKKADEA-- 329

Query: 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                 + +   V S LA  +    + ++A    +
Sbjct: 330 ------NDNLFRVCSILASLHALADQYEEAEYYFQ 358

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 40/337 (11%), Positives = 90/337 (26%), Gaps = 74/337 (21%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN 326
           L + +    +      AI  L Q+I + P      ++   K    ++L        +   
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNP------DNQYLKVLLALKLHKMREEGEEEGE 231

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
                   LE          P V +  R  A+ + +  +  +A +  + AL+   +N   
Sbjct: 232 GEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--- 280

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
                A     +G     K      L    +     +                     L 
Sbjct: 281 -----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL---------------------LE 314

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A    +KA         E +  +  V   LA ++    +  E++ Y +        
Sbjct: 315 LIGHAVAHLKKAD--------EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA---- 562
                P  +    L   +     M   ++AI    + +KI   +  ++     ++     
Sbjct: 367 -----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM 421

Query: 563 -------------QMGVMYYMLGNYSDSYDSFKNAIS 586
                         +  +  +      + +  +  + 
Sbjct: 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630
           L    +S D F++ +        +   F     N +      +     A+E   +A  ++
Sbjct: 24  LMEGENSLDDFEDKVFY--RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81

Query: 631 EQECGPY-HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689
           +QE        +L  + N A  Y  +GRL D    ++ V  + E+       +  +    
Sbjct: 82  QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141

Query: 690 LAELLKEAGRVRSRKA 705
                 + G  ++ +A
Sbjct: 142 EGWTRLKCGGNQNERA 157

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  102 bits (255), Expect = 9e-23
 Identities = 54/451 (11%), Positives = 130/451 (28%), Gaps = 72/451 (15%)

Query: 236 DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI- 294
            NP +  E         + G   + S+      ++   +Y +L  ++ A    ++++ + 
Sbjct: 176 TNPFRKDEKNANKLLMQDGGIKLEASM-----CYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 295 -----------------PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
                               E      L       +       L  L+ +   +   L  
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 338 QKQVLG--ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
            +  L       +  +     A+      +F +        L+I   N            
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN--------LDVY 342

Query: 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
            L        G+           S  ++    +  V     ++G  YL +++  EA   +
Sbjct: 343 PLHLASLHESGEKNKLYL----ISNDLVDRHPEKAVTW--LAVGIYYLCVNKISEARRYF 396

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
            K+            P     ++  A  +   G+  ++ S    A R+            
Sbjct: 397 SKSS--------TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQ-------G 439

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
                  +   +  +  +  A + LQ +  ++   P     +   E  +GV+ +   +  
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP-----LLLNE--LGVVAFNKSDMQ 492

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + + F+NA+  ++     +  +       +G A  +    + A++   +   +      
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWA-ATWANLGHAYRKLKMYDAAIDALNQGLLL------ 545

Query: 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
               +   V++ +A  Y        AI  L 
Sbjct: 546 --STNDANVHTAIALVYLHKKIPGLAITHLH 574

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 68/496 (13%), Positives = 140/496 (28%), Gaps = 101/496 (20%)

Query: 225 LKQARELISSGDNPQKALELAL---------RAAKSFEIGANGKPSLELVMCLHVIAAIY 275
                +++    NP  A  LA          RA            S     C ++ A   
Sbjct: 104 AFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS---ACRYLAAFCL 160

Query: 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAG-------HMQLGDTYAMLGQLENSL 328
             L  +  A+ +L ++      E+     L +  G           G  Y  L   + + 
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAH----------VQALQFSEAQK----FCQ 374
            CY   L V        D +  E    L   H          V  L +S   K    F +
Sbjct: 221 ECYKEALMV--------DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

Query: 375 MALDIHKDNGSPASLEEAADRRL---------------MGLICETKGDHEAALEHLVLAS 419
               +  +  S       A+  L                      +      L       
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI- 331

Query: 420 MTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478
              +  D  + +V  +      +       ++        +        + HP  A  ++
Sbjct: 332 ---LEIDPYNLDVYPL---HLASLHESGEKNKLYLISNDLV--------DRHPEKAVTWL 377

Query: 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538
            +   Y    K+ E++ Y   +  +   P       +        +  +    E +QAI 
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTM--DP-------QFGPAWIGFAHSFAIEGEHDQAIS 428

Query: 539 LLQKALKIYNDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
               A +++                  +G+ +  LGN   + +  +++ +          
Sbjct: 429 AYTTAARLFQGTH---------LPYLFLGMQHMQLGNILLANEYLQSSYAL--------F 471

Query: 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656
            +  + LN++G+    +  +  A+  F+ A  +  ++           ++NL   Y  + 
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQSNEKPWAATWANLGHAYRKLK 530

Query: 657 RLDDAIEILEFVVGIR 672
             D AI+ L   + + 
Sbjct: 531 MYDAAIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 46/411 (11%), Positives = 119/411 (28%), Gaps = 66/411 (16%)

Query: 243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302
           E  L    ++   +        +  L+++     S             SI        ++
Sbjct: 251 EWDLVLKLNYSTYSKEDA--AFLRSLYMLKLNKTSHEDELRRAEDYLSSING-----LEK 303

Query: 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362
            +       +   DT  +  +  + L           ++L E DP   +       +  +
Sbjct: 304 SSDL----LLCKADTLFVRSRFIDVLAIT-------TKIL-EIDPYNLDVYPLHLASLHE 351

Query: 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422
           + + ++        +D H +     +         +G+          A  +   +  + 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEK--AVTWL------AVGIYYLCVNKISEARRYFSKS--ST 401

Query: 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           +    D +          ++     +D+A  AY  A   F+             ++ L  
Sbjct: 402 M----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT--------HLPYLFLGM 449

Query: 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
            + + G +  +  Y +++  +                L ++  +  + ++++ AI   Q 
Sbjct: 450 QHMQLGNILLANEYLQSSYAL--FQ-------YDPLLLNELGVVAFNKSDMQTAINHFQN 500

Query: 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602
           AL +       +   A   A +G  Y  L  Y  + D+    +     +    +      
Sbjct: 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL----LLSTNDAN----V 552

Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
              + L  + +     A+    E+ +I         P+ +     L    +
Sbjct: 553 HTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 48/467 (10%), Positives = 117/467 (25%), Gaps = 90/467 (19%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE-----GQEH-ALAKFAGHMQL-GDTYAM 320
              +A +YC  G Y  A  +L +                    L  + G + L G+T   
Sbjct: 120 AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
               +N+         ++ +            C    + +     F  A++  + AL + 
Sbjct: 180 RKDEKNANKLLMQDGGIKLE---------ASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440
                       A  +L+     T  +    +  L  ++     + +DA        +  
Sbjct: 231 AKCYE-------AFDQLVSNHLLTADEEWDLVLKLNYST----YSKEDAAFLRSLYMLKL 279

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500
              S          Y  ++   + +        + + +  AD      +  +  +     
Sbjct: 280 NKTSHEDELRRAEDYLSSINGLEKS--------SDLLLCKADTLFVRSRFIDVLAITTKI 331

Query: 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560
           L I                     +      E  +   +    +  + +           
Sbjct: 332 LEIDPY---------NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA--------- 373

Query: 561 EA--QMGVMYYMLGNYSDSYDSFKNAISK--------------LRAIGERKSAF------ 598
                +G+ Y  +   S++   F  + +                   GE   A       
Sbjct: 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433

Query: 599 ------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
                   +    +G+  +Q  +I  A E  + + ++              + + L    
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVA 485

Query: 653 DAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
                +  AI   +  + +  +K  +           L    ++   
Sbjct: 486 FNKSDMQTAINHFQNALLL-VKKTQSNEKPWAATWANLGHAYRKLKM 531

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 54/407 (13%), Positives = 123/407 (30%), Gaps = 67/407 (16%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
           H++LG      GQL ++L  +   ++         DP         A   +   +   A 
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL 57

Query: 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA---------SMT 421
                 + +  D         A  +R  G +   +G  + A +                 
Sbjct: 58  PDLTKVIALKMDF------TAARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
             +    A+      S        + Y  A     K L        E     A +    A
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--------EVCVWDAELRELRA 161

Query: 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
           + + + G+ R++ S  + A ++  K        +       +S++Y  + + E ++  ++
Sbjct: 162 ECFIKEGEPRKAISDLKAASKL--KS-------DNTEAFYKISTLYYQLGDHELSLSEVR 212

Query: 542 KALKI---YNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
           + LK+   +         V  +   +         G Y+D+   +++ +          +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVA 268

Query: 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656
            +   +  ++     +     EA+ +  E   +         PD +    + A  Y    
Sbjct: 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEE 320

Query: 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703
             D+AI+          E     N +    +  L +  +   + + R
Sbjct: 321 MYDEAIQDY--------EAAQEHNENDQQIREGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 44/391 (11%), Positives = 108/391 (27%), Gaps = 84/391 (21%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           A ++ ++G+   A+P L + I +        +   A     +Q G      G+L+ +   
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKM------DFTAA----RLQRGHLLLKQGKLDEAEDD 93

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
           +   L+         +P                    E            +        +
Sbjct: 94  FKKVLKS--------NP-----------------SEQEE----------KEAESQLVKAD 118

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYD 449
           E    R   L      D+ AA+  L       +     DAE+        + ++      
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKI----LEVCVWDAELR---ELRAECFIKEGEPR 171

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI---YEK 506
           +A    + A         +        F +++ +Y + G    S S     L++   +++
Sbjct: 172 KAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
                   +  + L + +           A    +  +K     P         + ++  
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICH 280

Query: 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626
            +       ++       +       + +      AL     A +     +EA++ +E A
Sbjct: 281 CFSKDEKPVEAIRICSEVL-------QMEPDNV-NALKDRAEAYLIEEMYDEAIQDYEAA 332

Query: 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
           +          + +   +   L      + +
Sbjct: 333 QEH--------NENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 31/200 (15%)

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
               + L       G+L ++ S    A+     P       +        ++++ +M + 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDG--DP-------DNYIAYYRRATVFLAMGKS 53

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK------ 587
           + A+  L K + +       +        Q G +    G   ++ D FK  +        
Sbjct: 54  KAALPDLTKVIAL-------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106

Query: 588 -LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646
              A  +   A     L    L          A+   ++   +              +  
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRE 158

Query: 647 NLAGTYDAIGRLDDAIEILE 666
             A  +   G    AI  L+
Sbjct: 159 LRAECFIKEGEPRKAISDLK 178

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 41/196 (20%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALA--------KFAGHMQLGDTY 318
            + I+ +Y  LG +  ++  + + +++        +H           K    ++  +  
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKKLNKLIESAEEL 244

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC----RYLAEAHVQALQFSEAQKFCQ 374
              G+  ++   Y + ++         +P V E        +     +  +  EA + C 
Sbjct: 245 IRDGRYTDATSKYESVMKT--------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296

Query: 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
             L +  DN        A   R        +  ++ A++    A      N+ D ++   
Sbjct: 297 EVLQMEPDN------VNALKDR--AEAYLIEEMYDEAIQDYEAA---QEHNENDQQIRE- 344

Query: 435 DCSIGDTYLSLSRYDE 450
              +      L +  +
Sbjct: 345 --GLEKAQRLLKQSQK 358

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  100 bits (251), Expect = 2e-22
 Identities = 52/400 (13%), Positives = 120/400 (30%), Gaps = 58/400 (14%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           ++A Y S+G   + + +  +++E+ P      +++       ++       LG+  +++ 
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKP------DYSKV----LLRRASANEGLGKFADAMF 94

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
             +        + G+ +    E             +  E       A     +  S    
Sbjct: 95  DLS-----VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL-STQPA 148

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           +E  D++       +        +  +  +    +N+ D E+   +        S   YD
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM--NGLSNLYKRSPESYD 206

Query: 450 EAGFAYQKALTAFK------TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
           +A  ++ KA   F+          +    +A                  +    + A+ +
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266

Query: 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563
           + +           +    ++ I    N+  +      KALK+        S  + +   
Sbjct: 267 FPR----------VNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNNSSVYYH 309

Query: 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623
            G M ++L NY  +   F  A        E           Q+     +    ++   LF
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAK-------ELDPENI-FPYIQLACLAYRENKFDDCETLF 361

Query: 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
            EA+           P+   V +  A         D A++
Sbjct: 362 SEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALK 393

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 93.3 bits (232), Expect = 5e-20
 Identities = 55/442 (12%), Positives = 128/442 (28%), Gaps = 68/442 (15%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
                 A+       +  NG  +   +  +        ++ +  E    ++ +   P  E
Sbjct: 86  LGKFADAMFDLSVLSL--NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATP-TE 142

Query: 299 EGQEHALAKFAGHMQL-----GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
              + A  +      L       ++  + + E +   Y    E  K+++      +    
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG----LSNLY 198

Query: 354 RYLAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAAL 412
           +   E++ +A + F++A +  +  LD + ++      + A      G+    K D   A 
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE-KLAISLEHTGIFKFLKNDPLGAH 257

Query: 413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472
           E +  A    I              +       +   E    + KAL        +    
Sbjct: 258 EDIKKA----IELFPRVNSY---IYMALIMADRNDSTEYYNYFDKAL--------KLDSN 302

Query: 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532
            +SV+     M        ++    + A  +   P       E       ++ +    N+
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DP-------ENIFPYIQLACLAYRENK 353

Query: 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            +    L  +A + + +          +      +     ++  +   +  AI       
Sbjct: 354 FDDCETLFSEAKRKFPE-------APEVPNFFAEILTDKNDFDKALKQYDLAI------- 399

Query: 593 ERKSAFF------GVALNQMGLACVQRY--SINEAVELFEEARSILEQECGPYHPDTLGV 644
           E ++            + +  L        +  EA  L E+A  +         P +   
Sbjct: 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------DPRSEQA 451

Query: 645 YSNLAGTYDAIGRLDDAIEILE 666
              LA        +D+AI + E
Sbjct: 452 KIGLAQMKLQQEDIDEAITLFE 473

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 92.5 bits (230), Expect = 7e-20
 Identities = 57/451 (12%), Positives = 134/451 (29%), Gaps = 75/451 (16%)

Query: 259 KPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY 318
           K   +  + L      +    +Y++AI     ++E+      +E  +     +  L   Y
Sbjct: 2   KD--KYALALKDKGNQFFRNKKYDDAIKYYNWALEL------KEDPVF----YSNLSACY 49

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK-FCQMAL 377
             +G L+  +   T  LE+         P   +     A A+    +F++A      ++L
Sbjct: 50  VSVGDLKKVVEMSTKALEL--------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSL 101

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
                + + AS+E   +R    L  +     +     +  A+ T             D  
Sbjct: 102 ---NGDFNDASIEPMLER---NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155

Query: 438 I-------GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                     ++  + + +     Y ++  A K                           
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL---SNLYKRSPESYDKADESF 212

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
            ++    E  L    +         I+  L          N+   A + ++KA++++   
Sbjct: 213 TKAARLFEEQLDKNNEDEKLKEKLAIS--LEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270

Query: 551 PGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
                      +   M ++     + ++ Y+ F  A+       +  ++         G 
Sbjct: 271 ----------NSYIYMALIMADRNDSTEYYNYFDKALKL-----DSNNSS---VYYHRGQ 312

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668
                 + ++A + F++A+ +         P+ +  Y  LA       + DD   +    
Sbjct: 313 MNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEA 364

Query: 669 VGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
                       P+  +     AE+L +   
Sbjct: 365 KRK--------FPEAPEVPNFFAEILTDKND 387

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 54/431 (12%), Positives = 127/431 (29%), Gaps = 61/431 (14%)

Query: 239 QKALELALRAAKS----FEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
           ++       A  +        A  +   +  +      A +  + +        ++S E 
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186

Query: 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354
                     L K +                 +   +   L+   +   +   ++  +  
Sbjct: 187 DKELMNGLSNLYKRS----PESYDKADESFTKAARLFEEQLDKNNEDE-KLKEKLAISLE 241

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
           +             A +  + A+++            +       LI   + D      +
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRV-------NSYIYM--ALIMADRNDSTEYYNY 292

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
              A    +    D+  +SV    G     L  YD+AG  + KA         E  P   
Sbjct: 293 FDKA----L--KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK--------ELDPENI 338

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
             +++LA +  R  K  + ++    A R + +                 + I    N+ +
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPE---------APEVPNFFAEILTDKNDFD 389

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGI--EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
           +A+K    A+++ N   G    +A +  +A +      + N+ ++ +  + A        
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS------- 442

Query: 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
           +        A   +    +Q+  I+EA+ LFEE+  +                  +   +
Sbjct: 443 KLDPRSE-QAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAIT--F 491

Query: 653 DAIGRLDDAIE 663
               ++   I 
Sbjct: 492 AEAAKVQQRIR 502

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 98.5 bits (245), Expect = 2e-22
 Identities = 40/317 (12%), Positives = 88/317 (27%), Gaps = 13/317 (4%)

Query: 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHE 409
            E     A+  +      EA++  ++AL+        +         ++G +   KG+  
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---RIVATSVLGEVLHCKGELT 70

Query: 410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469
            +L  +         +D             +   +      A    +KA         E 
Sbjct: 71  RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130

Query: 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529
            P    +    A +     +L E+++   + + +         P++    L  +     +
Sbjct: 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS----YQPQQQLQCLAMLIQCSLA 186

Query: 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
             +L+ A   L +   +  +       ++       + + M G+      +  N +    
Sbjct: 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD----KAAAANWLRHTA 242

Query: 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649
                 + F       +  A +       A  + EE              D       L 
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLN 300

Query: 650 GTYDAIGRLDDAIEILE 666
             Y   GR  DA  +L 
Sbjct: 301 QLYWQAGRKSDAQRVLL 317

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 96.6 bits (240), Expect = 1e-21
 Identities = 43/343 (12%), Positives = 110/343 (32%), Gaps = 23/343 (6%)

Query: 205 HKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL 264
           H+ +D+ E  +           +A+  I+ G+ P +A  LA  A +    G         
Sbjct: 2   HEIKDIREDTM----HAEFNALRAQVAINDGN-PDEAERLAKLALEELPPGW----FYSR 52

Query: 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL 324
           ++   V+  +    G+   ++ +++Q+ ++       +         +Q  +     G L
Sbjct: 53  IVATSVLGEVLHCKGELTRSLALMQQTEQM---ARQHDVWHYALWSLIQQSEILFAQGFL 109

Query: 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
           + +        ++  +   E  P      R  A+      +  EA+   +  +++     
Sbjct: 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169

Query: 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGDTYL 443
               L+  A   ++      +GD + A   L      +      ++ +++ +      + 
Sbjct: 170 PQQQLQCLA---MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
                  A       L      +  N+  +   +  +A      G+   ++   E     
Sbjct: 227 MTGDKAAA----ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282

Query: 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
                  +  +   + L   + +Y        A ++L  ALK+
Sbjct: 283 ARS--LRLMSDLNRNLLLL-NQLYWQAGRKSDAQRVLLDALKL 322

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 53/442 (11%), Positives = 126/442 (28%), Gaps = 87/442 (19%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                +   Y +++  +E+                    H++LG      GQL ++L  +
Sbjct: 10  GVDLGTENLYFQSMADVEK--------------------HLELGKKLLAAGQLADALSQF 49

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              ++         DP         A   +   +   A       + +  D         
Sbjct: 50  HAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------TA 95

Query: 392 AADRRLMGLICETKGDHEAALEHLVLA---------SMTMIANDQDAEVASVDCSIGDTY 442
           A  +R  G +   +G  + A +                   +    ++      S     
Sbjct: 96  ARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502
                Y  A     K L        E     A +    A+ + + G+ R++ S  + A +
Sbjct: 154 FGSGDYTAAIAFLDKIL--------EVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205

Query: 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVAG 559
           +                   +S++Y  + + E ++  +++ LK+   +         V  
Sbjct: 206 LKND---------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256

Query: 560 IEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           +   +         G Y+D+   +++ +          + +   +  ++     +     
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFSKDEKPV 312

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           EA+ +  E   +         PD +    + A  Y      D+AI+          E   
Sbjct: 313 EAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDY--------ETAQ 356

Query: 678 TANPDVDDEKRRLAELLKEAGR 699
             N +    +  L +  +   +
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 51/413 (12%), Positives = 123/413 (29%), Gaps = 60/413 (14%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           A ++ ++G+   A+P L + I++        +   A     +Q G      G+L+ +   
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKM------DFTAA----RLQRGHLLLKQGKLDEAEDD 116

Query: 331 YTTGLEVQ------KQVLGE-TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
           +   L+        K+   +       +  R  A     +  ++ A  F    L++   +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443
                   A  R L       +G+   A+  L          + + E       I   Y 
Sbjct: 177 --------AELRELRAECFIKEGEPRKAISDL---KAASKLKNDNTEAF---YKISTLYY 222

Query: 444 SLSRYDEAGFAYQKAL-------TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
            L  ++ +    ++ L         F   K      +  +     ++    G+  ++ S 
Sbjct: 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--KLNKLIESAEELIRD-GRYTDATSK 279

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQS 555
            E+ ++           E        +   +    +  +AI++  + L++  ++      
Sbjct: 280 YESVMKTEPS-----IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL-- 332

Query: 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615
                       Y +   Y ++   ++ A        + +      A   +  +  + Y 
Sbjct: 333 ------KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG-LEKAQRLLKQSQKRDYY 385

Query: 616 INEAVEL---FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEIL 665
               V+     +E      +    +HPD                 +  A E+L
Sbjct: 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 44/369 (11%), Positives = 101/369 (27%), Gaps = 65/369 (17%)

Query: 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428
                   +D+  +N    S+ +      +G      G    AL     A    +  D D
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAA----V--DGD 56

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
            +           +L++ +   A     K +        +      +  ++   +  + G
Sbjct: 57  PDNYIAYYRRATVFLAMGKSKAALPDLTKVI--------QLKMDFTAARLQRGHLLLKQG 108

Query: 489 KLRESKSYCENALRI------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
           KL E++   +  L+        ++    +   +    L   +       +   AI  L K
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168

Query: 543 ALKI---------------------------YNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
            L++                              A   ++       ++  +YY LG++ 
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228

Query: 576 DSYDSFKNAIS----KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631
            S    +  +       R     K       L +     ++     +A   +E     ++
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MK 285

Query: 632 QECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690
            E  P   +        +   +    +  +AI +   V+ +         PD  +  +  
Sbjct: 286 TE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDR 335

Query: 691 AELLKEAGR 699
           AE       
Sbjct: 336 AEAYLIEEM 344

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 35/296 (11%), Positives = 86/296 (29%), Gaps = 83/296 (28%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALA--------KFAGHMQLGDTY 318
            + I+ +Y  LG +  ++  + + +++        +H           K    ++  +  
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKKLNKLIESAEEL 267

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC----RYLAEAHVQALQFSEAQKFCQ 374
              G+  ++   Y + ++         +P + E        +     +  +  EA + C 
Sbjct: 268 IRDGRYTDATSKYESVMKT--------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319

Query: 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
             L +  DN        A   R        +  ++ A++    A      N+ D ++   
Sbjct: 320 EVLQMEPDN------VNALKDR--AEAYLIEEMYDEAIQDYETA---QEHNENDQQIRE- 367

Query: 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494
              +      L +  +  +     +                          R  K +E  
Sbjct: 368 --GLEKAQRLLKQSQKRDYYKILGV-------------------------KRNAKKQEII 400

Query: 495 -SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +Y + AL+    P              D     E   + E+    +  A ++ +D
Sbjct: 401 KAYRKLALQW--HP--------------DNFQNEEEKKKAEKKFIDIAAAKEVLSD 440

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 43/193 (22%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           L++ A ELI  G     A            +      +   V     I   +    +  E
Sbjct: 260 LIESAEELIRDGR-YTDATSKYESV-----MKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
           AI V  + +++ P      ++  A         + Y +    + ++  Y T  E      
Sbjct: 314 AIRVCSEVLQMEP------DNVNA----LKDRAEAYLIEEMYDEAIQDYETAQEH----- 358

Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQK------------------FCQMALDIHKDNG 384
              +    +    L +A     Q  +                     + ++AL  H DN 
Sbjct: 359 ---NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415

Query: 385 SPASLEEAADRRL 397
                ++ A+++ 
Sbjct: 416 QNEEEKKKAEKKF 428

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 49/348 (14%), Positives = 105/348 (30%), Gaps = 60/348 (17%)

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           LAE H     F    K   + ++    +        A+   +                  
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKDPFH--------ASCLPVHIGTLVELNKANELFY-- 77

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNKGENHPAVA 474
              S  ++       V+    ++G  YL +    + A     KA T              
Sbjct: 78  --LSHKLVDLYPSNPVSW--FAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYG 125

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
             ++     +    +  ++ +    A ++                +  +   Y   N  +
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQL--MK-------GCHLPMLYIGLEYGLTNNSK 176

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            A +   +AL I  + P             ++GV+ +  G +  +   F +A+ K++AIG
Sbjct: 177 LAERFFSQALSIAPEDP---------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

Query: 593 -ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
            E     +   LN +G  C +     EA++   +A  +         P     YS +   
Sbjct: 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYI 279

Query: 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
           +  +G  ++A++     +G+          D       L   ++    
Sbjct: 280 HSLMGNFENAVDYFHTALGL--------RRDDTFSVTMLGHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 81.2 bits (201), Expect = 9e-17
 Identities = 43/320 (13%), Positives = 102/320 (31%), Gaps = 47/320 (14%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           +  +A  +     +     +        V+E+   HA            T   L +    
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSV-----VMEKDPFHASC----LPVHIGTLVELNKANEL 75

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEA-HVQALQFSEAQKFCQMALDIHKDNGSP 386
                         L +  P    +   +     +   +   A+++   A  + K  G P
Sbjct: 76  FYLS--------HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG-P 126

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
           A +         G     + +H+ A+     A        +   +      IG  Y   +
Sbjct: 127 AWI-------AYGHSFAVESEHDQAMAAYFTA----AQLMKGCHLPM--LYIGLEYGLTN 173

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   + +AL           P    V   +  +  + G+ + ++ +  +AL   + 
Sbjct: 174 NSKLAERFFSQAL--------SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
               V  ++    L ++  +   + +  +A+   ++AL +    P      A   + +G 
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQN----ASTYSAIGY 278

Query: 567 MYYMLGNYSDSYDSFKNAIS 586
           ++ ++GN+ ++ D F  A+ 
Sbjct: 279 IHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 54/367 (14%), Positives = 109/367 (29%), Gaps = 71/367 (19%)

Query: 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282
           +++  A     + D  +   +L     +         P     + +H        L + N
Sbjct: 24  VVVSLAERHYYNCDF-KMCYKLTSVVMEKD-------PFHASCLPVH--IGTLVELNKAN 73

Query: 283 EAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQL-ENSLMCYTTGLEVQKQ 340
           E   +  + +++ P       + ++       +G  Y M+G   E++    +    +   
Sbjct: 74  ELFYLSHKLVDLYP------SNPVS----WFAVGCYYLMVGHKNEHARRYLSKATTL--- 120

Query: 341 VLGETDPRVGETCRYLAEAHVQALQ--FSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
                +   G    ++A  H  A++    +A      A  + K    P           +
Sbjct: 121 -----EKTYGPA--WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML--------YI 165

Query: 399 GLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           GL      + + A      A    ++   +D  V      +G        +  A   +  
Sbjct: 166 GLEYGLTNNSKLAERFFSQA----LSIAPEDPFVM---HEVGVVAFQNGEWKTAEKWFLD 218

Query: 458 ALTAFKTNKGENH-PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           AL   K    E        +   L  +  +  K  E+  Y   AL +         P+  
Sbjct: 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQN- 269

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ--MGVMYYMLGNY 574
           AS  + +  I+  M   E A+     AL +  D            +   +G    M    
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT---------FSVTMLGHCIEMYIGD 320

Query: 575 SDSYDSF 581
           S++Y   
Sbjct: 321 SEAYIGA 327

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
           A       ++G+T+  L  + +A  A+++ L   K  +  +  A    +  L + Y   G
Sbjct: 6   AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLG 63

Query: 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY- 547
           +   +  Y +  L +  + +        A     + + Y  + + E+AI    K L I  
Sbjct: 64  EFETASEYYKKTLLLARQ-LKDRA--VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120

Query: 548 --NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
              D  G+      +    G  Y  LGN+  +    +  +   R +G
Sbjct: 121 ELKDRIGEGRACWSL----GNAYTALGNHDQAMHFAEKHLEISREVG 163

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 81.4 bits (202), Expect = 3e-18
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 398 MGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
           +G      G+   A+        +     D+ AE      ++G+ Y+ L  ++ A   Y+
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RIAYSNLGNAYIFLGEFETASEYYK 73

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           K L   +  K  +    A     L + Y       ++  Y    L I ++ +        
Sbjct: 74  KTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRI--GE 128

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
                 + + Y ++   +QA+   +K L+I 
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 78.7 bits (195), Expect = 3e-17
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 5/151 (3%)

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
                 ++ + +  +     A+   ++ L I  +  G ++      + +G  Y  LG + 
Sbjct: 8   QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFE 66

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + + +K  +   R + +R       +   +G          +A++   +  +I  QE  
Sbjct: 67  TASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELK 123

Query: 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                      +L   Y A+G  D A+   E
Sbjct: 124 -DRIGEGRACWSLGNAYTALGNHDQAMHFAE 153

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 6/164 (3%)

Query: 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528
           +  A    F  L + +   G  R++    E  L I ++   G    E     +++ + Y 
Sbjct: 4   SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAE-RIAYSNLGNAYI 60

Query: 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
            + E E A +  +K L +       ++  A     +G  Y +L +Y  + D     ++  
Sbjct: 61  FLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119

Query: 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
           + + +R     G A   +G A     + ++A+   E+   I  +
Sbjct: 120 QELKDRIGE--GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 7/166 (4%)

Query: 343 GETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           G       G     L   H     F +A    +  L I K+ G  A+  E      +G  
Sbjct: 1   GPGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNA 58

Query: 402 CETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
               G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A   + K L 
Sbjct: 59  YIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117

Query: 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
             +  + ++          L + Y   G   ++  + E  L I  +
Sbjct: 118 IAQ--ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 66.0 bits (162), Expect = 7e-13
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN 326
               +   +  LG + +A+   EQ + I   E G + A      +  LG+ Y  LG+ E 
Sbjct: 11  AFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAER--IAYSNLGNAYIFLGEFET 67

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +   Y   L + +Q+         ++C  L   +     + +A  +    L I ++    
Sbjct: 68  ASEYYKKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHL 415
               E      +G      G+H+ A+   
Sbjct: 126 IG--EGRACWSLGNAYTALGNHDQAMHFA 152

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610
           PG ++        +G  +Y+LGN+ D+  + +  +   +  G++ +    +A + +G A 
Sbjct: 2   PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAY 59

Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           +       A E +++   +  Q              +L  TY  +   + AI+   
Sbjct: 60  IFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           N + A+      L  AK F      K +    +    +   Y  LG++  A    ++++ 
Sbjct: 24  NFRDAVIAHEQRLLIAKEF----GDKAAE--RIAYSNLGNAYIFLGEFETASEYYKKTLL 77

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
           +   +       A+      LG+TY +L   E ++  +   L + +++        G  C
Sbjct: 78  L-ARQLKDRAVEAQ--SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR--IGEGRAC 132

Query: 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
             L  A+       +A  F +  L+I ++ G
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 50/443 (11%), Positives = 96/443 (21%), Gaps = 78/443 (17%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           +Q   + S     ++ALE   R            P  + V+ +        +L      +
Sbjct: 70  EQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTP--QQVVAIASHDGGKQALETVQRLL 126

Query: 286 PVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344
           PVL Q+  + P      E  +A              L  ++  L        +       
Sbjct: 127 PVLCQAHGLTP------EQVVA----IASHDGGKQALETVQALLPVLCQAHGL------- 169

Query: 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
             P                            A  +                   G   + 
Sbjct: 170 -TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ--------VVAIASNGGGKQA 220

Query: 405 KGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
               +  L  L  A         Q     +   S G    +L           +A     
Sbjct: 221 LETVQRLLPVLCQA----HGLTPQQVVAIA---SNGGGKQALETVQRLLPVLCQAH---- 269

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523
                  P         +        ++        A  +   P                
Sbjct: 270 ----GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL--TP--------------QQ 309

Query: 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583
                S    +QA++ +Q+ L +   A G         A        L            
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
           A                VA+   G       ++   + +  +A  +         P+ + 
Sbjct: 370 AH-------GLTPEQV-VAIASNGGGKQALETVQRLLPVLCQAHGL--------TPEQVV 413

Query: 644 VYSNLAGTYDAIGRLDDAIEILE 666
             ++  G   A+  +   + +L 
Sbjct: 414 AIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 50/431 (11%), Positives = 93/431 (21%), Gaps = 84/431 (19%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           +Q   + S     ++ALE   R            P  E V+ +        +L      +
Sbjct: 104 QQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTP--EQVVAIASHDGGKQALETVQALL 160

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           PVL Q+  +       E  +A        G     L  ++  L        +        
Sbjct: 161 PVLCQAHGLT-----PEQVVA----IASNGGGKQALETVQRLLPVLCQAHGL-------- 203

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
            P+                           A  +            A      G   +  
Sbjct: 204 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ------VVAIASN--GGGKQAL 255

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
              +  L  L  A            VA    S      +L           +A       
Sbjct: 256 ETVQRLLPVLCQA----HGLTPQQVVA--IASNSGGKQALETVQRLLPVLCQAH------ 303

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
                P                  ++        A  +   P       +    +     
Sbjct: 304 --GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL--TP-------QQVVAIASHDG 352

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
             +++  +++ + +L +A  +    P Q   +A      G     L            A 
Sbjct: 353 GKQALETVQRLLPVLCQAHGL---TPEQVVAIAS----NGGGKQALETVQRLLPVLCQAH 405

Query: 586 S--------------KLRAIGERKSAF------------FGVALNQMGLACVQRYSINEA 619
                            +A+   +                 VA+   G       SI   
Sbjct: 406 GLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQ 465

Query: 620 VELFEEARSIL 630
           +   + A + L
Sbjct: 466 LSRPDPALAAL 476

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 42/346 (12%), Positives = 81/346 (23%), Gaps = 57/346 (16%)

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           L  A    +   EA    + AL     N +P  +   A         +     +  L  L
Sbjct: 39  LKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH---DGGKQALETVQRLLPVL 95

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
             A        Q     +   S      +L           +A            P    
Sbjct: 96  CQA---HGLTPQQVVAIA---SHDGGKQALETVQRLLPVLCQAH--------GLTPEQVV 141

Query: 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535
                         ++        A  +         PE++ +          S    +Q
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLT--------PEQVVA--------IASNGGGKQ 185

Query: 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595
           A++ +Q+ L +   A G         A  G     L            A           
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLT 238

Query: 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655
                VA+   G       ++   + +  +A  +         P  +   ++ +G   A+
Sbjct: 239 PQQV-VAIASNGGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIASNSGGKQAL 289

Query: 656 GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701
             +   + +L    G+         P             +    V+
Sbjct: 290 ETVQRLLPVLCQAHGL--------TPQQVVAIASNGGGKQALETVQ 327

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 22/198 (11%), Positives = 37/198 (18%), Gaps = 33/198 (16%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
                +L      +PVL Q+  + P      +  +A              L  ++  L  
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTP------QQVVA----IASHDGGKQALETVQRLLPV 366

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                 +         P                            A  +  +        
Sbjct: 367 LCQAHGL--------TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ------- 411

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
                       +     +  L  L  A            VA    S G    +L     
Sbjct: 412 -VVAIASHDGGKQALETVQRLLPVLCQA----HGLTPQQVVAI--ASNGGGRPALESIVA 464

Query: 451 AGFAYQKALTAFKTNKGE 468
                  AL A   +   
Sbjct: 465 QLSRPDPALAALTNDHLV 482

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 33/307 (10%), Positives = 77/307 (25%), Gaps = 50/307 (16%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
                    ++  A+E          A   ++            Y  L++YD A    + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKL----EAKKYNSPYIY--NRRAVCYYELAKYDLAQKDIET 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
             +           A ++ F     +  + G+   +    + A+                
Sbjct: 63  YFSKVNAT-----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DT-------TRL 108

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYS 575
                + S + +      AI+ ++K ++     P         +   ++G  YY    Y 
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP---------KVFYELGQAYYYNKEYV 159

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN---EAVELFEEARSILEQ 632
            +  SF   +               +       A   +        A   +E+   +   
Sbjct: 160 KADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211

Query: 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692
               Y  + +     +A  Y        A    + ++ +        +P        L  
Sbjct: 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKM 263

Query: 693 LLKEAGR 699
            L+    
Sbjct: 264 KLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 24/239 (10%), Positives = 58/239 (24%), Gaps = 37/239 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
            A  Y  L +Y+ A   +E       +   +  +          G      GQ   ++  
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFS--KVNATKAKSAD----FEYYGKILMKKGQDSLAIQQ 96

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
           Y   ++         D    +    +         F  A ++ +  +     +       
Sbjct: 97  YQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD------- 141

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA---NDQDAEVASVDCSIGDTYLSL-- 445
                  +G       ++  A    V      +    N                  +   
Sbjct: 142 -PKVFYELGQAYYYNKEYVKADSSFVKV----LELKPNIYIG-----YLWRARANAAQDP 191

Query: 446 -SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
            ++   A   Y+K +        +    +      +A  Y       ++ +  +N L +
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 21/137 (15%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
           +     +   NY+++ + F    +K     +  S       N+  +   +    + A + 
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAK-----KYNSP---YIYNRRAVCYYELAKYDLAQKD 59

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
            E   S +              +          G+   AI+  +  V          +  
Sbjct: 60  IETYFSKVN-----ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTT 106

Query: 683 VDDEKRRLAELLKEAGR 699
             D   ++       G 
Sbjct: 107 RLDMYGQIGSYFYNKGN 123

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 22/142 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN--- 326
           +   Y    +Y +A     + +E+ P         +     ++      A          
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKP------NIYIG----YLWRARANAAQDPDTKQGL 197

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +   Y   +EV      +    + E   Y+A  +       +A    +  L +   N   
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN--- 254

Query: 387 ASLEEAADRRLMGLICETKGDH 408
              ++A     + +  E    H
Sbjct: 255 ---KKA--IDGLKMKLEHHHHH 271

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 40/240 (16%), Positives = 72/240 (30%), Gaps = 55/240 (22%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T     +   A  A   A            P   +V   LA  +        + +   
Sbjct: 62  GLTQAENEKDGLAIIALNHAR--------MLDPKDIAVHAALAVSHTNEHNANAALASLR 113

Query: 499 NALRIYEK------PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAP 551
             L    +             +     +      + + NE  +   LL  AL++  NDA 
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA- 172

Query: 552 GQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVAL 603
                    +    +GV+Y +  NY  +  + + A+       E +          G  L
Sbjct: 173 ---------QLHASLGVLYNLSNNYDSAAANLRRAV-------ELRPDDAQLWNKLGATL 216

Query: 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                    R    EA++ +  A  I        +P  + V  N+A +Y  + + D A +
Sbjct: 217 ANGN-----RP--QEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAK 261

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 49/333 (14%), Positives = 98/333 (29%), Gaps = 56/333 (16%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                  L    EA    E   +  P      E   A       LG T A   +   +++
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAP------EREEA----WRSLGLTQAENEKDGLAII 76

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-------HKD 382
                  +        DP+       LA +H      + A    +  L            
Sbjct: 77  ALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128

Query: 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDT 441
           N       +  + +          ++      L  A    +  N  DA++     S+G  
Sbjct: 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA----LEMNPNDAQLH---ASLGVL 181

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           Y   + YD A    ++A+        E  P  A ++ +L        + +E+      AL
Sbjct: 182 YNLSNNYDSAAANLRRAV--------ELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233

Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVA 558
            I   P            + +++  Y +M++ + A K L +A+ +        G+ S  A
Sbjct: 234 DI--NP-------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284

Query: 559 G--IEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
              +     ++  ++        ++   +    
Sbjct: 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 34/232 (14%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-PVI 297
           +  L    +  +   +       ++  + +      + +  +Y E   +L  ++E+ P  
Sbjct: 113 RAWLLSQPQYEQLGSVNLQADVDID-DLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-- 169

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
                 A      H  LG  Y +    +++       +E+         P   +    L 
Sbjct: 170 ----NDAQL----HASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLG 213

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                  +  EA      ALDI+                 M +       ++ A + LV 
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGY------VRV--MYNMAVSYSNMSQYDLAAKQLVR 265

Query: 418 A------SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
           A        T           S+          ++R D     Y + +  F 
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599
           + +    Y               + G+    L N +++  +F+          +      
Sbjct: 3   MLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVC-------QAAPERE 55

Query: 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659
             A   +GL   +      A+     AR +         P  + V++ LA ++      +
Sbjct: 56  -EAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNAN 106

Query: 660 DAIEILE 666
            A+  L 
Sbjct: 107 AALASLR 113

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 55/327 (16%), Positives = 102/327 (31%), Gaps = 52/327 (15%)

Query: 347 PRVGETCRYLAEAHVQALQFSE-AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
             + E  +  AEAH     + +             ++N     L +       GL    +
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEEN----PLRDHPQPFEEGLRRLQE 77

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GD   A+     A    +   QD +       +G T     +   A  A ++ L      
Sbjct: 78  GDLPNAVLLFEAA----VQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCL------ 125

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
             E  P   +  + LA  +      R++     + LR        V P E  +G   +  
Sbjct: 126 --ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183

Query: 526 IYESMNEL------EQAIKLLQKALKI---YNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
               +  L       +  +L   A+++     D   Q          +GV++ + G Y  
Sbjct: 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG--------LGVLFNLSGEYDK 235

Query: 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
           + D F  A+         +   + +  N++G          EAV  +  A  +       
Sbjct: 236 AVDCFTAAL-------SVRPNDY-LLWNKLGATLANGNQSEEAVAAYRRALEL------- 280

Query: 637 YHPDTLGVYSNLAGTYDAIGRLDDAIE 663
             P  +    NL  +   +G   +A+E
Sbjct: 281 -QPGYIRSRYNLGISCINLGAHREAVE 306

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 46/332 (13%), Positives = 94/332 (28%), Gaps = 53/332 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                   G    A+ + E +++  P      +H  A       LG T A   Q   ++ 
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDP------KHMEA----WQYLGTTQAENEQELLAIS 119

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD------- 382
                LE+         P        LA +        +A +  +  L            
Sbjct: 120 ALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171

Query: 383 -NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441
                        +R++G +           E  + A    +  D  +    V C +G  
Sbjct: 172 AEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAA----VRLDPTSIDPDVQCGLGVL 226

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           +     YD+A   +  AL           P    ++ +L        +  E+ +    AL
Sbjct: 227 FNLSGEYDKAVDCFTAAL--------SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278

Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561
            +  +P              ++     ++    +A++   +AL +   + G +     + 
Sbjct: 279 EL--QP-------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329

Query: 562 AQ----MGVMYYMLGNYSDSYDSFKNAISKLR 589
                 + +   MLG       +    +S L 
Sbjct: 330 ENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 43/298 (14%), Positives = 92/298 (30%), Gaps = 48/298 (16%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
             +        Q   AI  L + +E+ P      ++  A     M L  ++        +
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKP------DNQTA----LMALAVSFTNESLQRQA 151

Query: 328 LMCYTTGLEVQ--------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379
                  L               G     +G + R L      +  F E ++    A+ +
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS-LFLEVKELFLAAVRL 210

Query: 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSI 438
              +       +   +  +G++    G+++ A++    A    ++    D  + +    +
Sbjct: 211 DPTS------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA----LSVRPNDYLLWN---KL 257

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T  + ++ +EA  AY++AL        E  P        L       G  RE+  +  
Sbjct: 258 GATLANGNQSEEAVAAYRRAL--------ELQPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSS----IYESMNELEQAIKLLQKALKIYNDAPG 552
            AL +  +     P  E  +   ++ S        + + +       + L       G
Sbjct: 310 EALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 51/403 (12%), Positives = 111/403 (27%), Gaps = 106/403 (26%)

Query: 278 LGQYNE-AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
           L  Y++      ++  +       +E+ L       + G      G L N+++ +     
Sbjct: 38  LSDYDDLTSATYDKGYQF-----EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF----- 87

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
             +  + + DP+  E  +YL     +  Q   A    +  L++                 
Sbjct: 88  --EAAV-QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL----------------- 127

Query: 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
                   K D++ AL  L                         ++ + S   +A    +
Sbjct: 128 --------KPDNQTALMAL-----------------------AVSFTNESLQRQACEILR 156

Query: 457 KALTAFKTNKGE--NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
             L  +              +    L       G L     +      ++   V   P  
Sbjct: 157 DWL-RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-LEVKELFLAAVRLDPTS 214

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYML 571
                   +  ++    E ++A+     AL +  ND                +G      
Sbjct: 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY----------LLWNKLGATLANG 264

Query: 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631
               ++  +++ A+       E +  +   +   +G++C+   +  EAVE F EA ++  
Sbjct: 265 NQSEEAVAAYRRAL-------ELQPGYIR-SRYNLGISCINLGAHREAVEHFLEALNM-- 314

Query: 632 QECGPYHPDTLGVYSNLAGTYDAI-----------GRLDDAIE 663
                    + G         + I           G+ D    
Sbjct: 315 ------QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 19/133 (14%)

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
           +       K  +   + P +         + G+     G+  ++   F+ A+       +
Sbjct: 43  DLTSATYDKGYQFEEENPLRDHPQPF---EEGLRRLQEGDLPNAVLLFEAAV-------Q 92

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
           +       A   +G    +      A+        +         PD       LA ++ 
Sbjct: 93  QDPKHM-EAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFT 143

Query: 654 AIGRLDDAIEILE 666
                  A EIL 
Sbjct: 144 NESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 35/235 (14%), Positives = 67/235 (28%), Gaps = 39/235 (16%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-PVI 297
           +  L      A        G     L     ++ ++  S   + E   +   ++ + P  
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDP-- 212

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
                           LG  + + G+ + ++ C+T  L V         P        L 
Sbjct: 213 ----TSIDPDV--QCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLG 258

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                  Q  EA    + AL++            +  R  +G+ C   G H  A+EH + 
Sbjct: 259 ATLANGNQSEEAVAAYRRALELQPGY------IRS--RYNLGISCINLGAHREAVEHFLE 310

Query: 418 ASMTMIANDQDAEVASVDCSI---------GDTYLSLSRYDEAGFAYQKALTAFK 463
           A    +   + +     +                  L + D  G A  + L+   
Sbjct: 311 A----LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           E E+A   ++  +  ++     Q+ +  +  +    +  L +Y D   +  +   +    
Sbjct: 2   EFERAKSAIESDVDFWDKL---QAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEE 58

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
              +         + GL  +Q   +  AV LFE A   ++Q+  P H +    +  L  T
Sbjct: 59  NPLRDH---PQPFEEGLRRLQEGDLPNAVLLFEAA---VQQD--PKHME---AWQYLGTT 107

Query: 652 YDAIGRLDDAIEILE 666
                +   AI  L 
Sbjct: 108 QAENEQELLAISALR 122

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.1 bits (188), Expect = 2e-15
 Identities = 34/266 (12%), Positives = 73/266 (27%), Gaps = 48/266 (18%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            G         + A+EH   A        +D    +   +          Y+ A      
Sbjct: 11  EGNKFYKARQFDEAIEHYNKA----WELHKDITYLN---NRAAAEYEKGEYETAISTLND 63

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           A+        E    + + +  ++  + R G         +  +  Y+K        E  
Sbjct: 64  AV--------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-----LTEHR 110

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
           +       I   +   E+ +K  +    +  +        A      G  Y+   ++ ++
Sbjct: 111 TA-----DILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWPNA 158

Query: 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637
             ++   I       +R         +    A  +  S  EA+    +A           
Sbjct: 159 VKAYTEMI-------KRAPEDA-RGYSNRAAALAKLMSFPEAIADCNKAIEK-------- 202

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIE 663
            P+ +  Y   A    A+     A+E
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALE 228

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 34/282 (12%), Positives = 77/282 (27%), Gaps = 57/282 (20%)

Query: 274 IYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYT 332
            +    Q++EAI    ++ E+                            G+ E ++    
Sbjct: 14  KFYKARQFDEAIEHYNKAWELHK-----------DITYLNNRAAAEYEKGEYETAISTLN 62

Query: 333 TGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
             +E            +    + ++++  +           +  ++ ++ +         
Sbjct: 63  DAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-------LT 107

Query: 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEA 451
             R     I     + E  L+            N + AE A      G  Y + S +  A
Sbjct: 108 EHRT--ADILTKLRNAEKELKKAEAE----AYVNPEKAEEAR---LEGKEYFTKSDWPNA 158

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
             AY + +        +  P  A  +   A    +     E+ + C  A+     P    
Sbjct: 159 VKAYTEMI--------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DP---- 204

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDA 550
                       ++   ++ E   A++ L  A       N+ 
Sbjct: 205 ---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 42/233 (18%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
           AA     G+Y  AI  L  ++E      G+E        +  +  ++A +G   + L   
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQ-----GREMRAD----YKVISKSFARIGNAYHKLGDL 95

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              +E  ++ L E   R  +    L           +  K  +    ++ +        E
Sbjct: 96  KKTIEYYQKSLTE--HRTADILTKLR-------NAEKELKKAEAEAYVNPEK------AE 140

Query: 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDE 450
            A  RL G    TK D   A++         I    +DA   S   +       L  + E
Sbjct: 141 EA--RLEGKEYFTKSDWPNAVKAYTEM----IKRAPEDARGYS---NRAAALAKLMSFPE 191

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
           A     KA+        E  P     ++R A       +   +    + A   
Sbjct: 192 AIADCNKAI--------EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 31/284 (10%), Positives = 71/284 (25%), Gaps = 64/284 (22%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
               G+ +    Q + ++  Y    E+ K +               A A  +  ++  A 
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELHKDI---------TYLNNRAAAEYEKGEYETAI 58

Query: 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430
                A++  ++          AD +++       G+    L  L       I   Q + 
Sbjct: 59  STLNDAVEQGREM--------RADYKVISKSFARIGNAYHKLGDLKKT----IEYYQKSL 106

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                    D    L   ++     +             +P  A         Y      
Sbjct: 107 TEH---RTADILTKLRNAEKELKKAEAEA--------YVNPEKAEEARLEGKEYFTKSDW 155

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---- 546
             +       ++    P       E A G ++ ++    +    +AI    KA++     
Sbjct: 156 PNAVKAYTEMIKR--AP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

Query: 547 ----YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
                                       +  Y+ + ++   A +
Sbjct: 207 VRAYIR---------------KATAQIAVKEYASALETLDAART 235

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 9/193 (4%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           +    +    QLE +   Y    E              +             +  EA ++
Sbjct: 41  KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH--AAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 373 CQMALDIHKDNGSPASLEEAADR-RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431
            + A  ++ +NG+P   + AA      G + E   D   A+     A+      ++  + 
Sbjct: 99  IEKASVMYVENGTP---DTAAMALDRAGKLME-PLDLSKAVHLYQQAAAVFENEERLRQA 154

Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A +        +   ++DEA  + QK  + +   + EN+P      +    +        
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMY--KEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 492 ESKSYCENALRIY 504
            ++     +  I 
Sbjct: 213 AAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 72.2 bits (177), Expect = 6e-14
 Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 10/228 (4%)

Query: 362 QALQFSEAQKFCQMALDIHKDN--GSPASLEEAADR-RLMGLICETKGDHEAALEHLVLA 418
            A + SEA +    A    K +        + AA       +  +     E A +  +  
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478
           +     N      A      G     L R  EA    +KA   +   +       A    
Sbjct: 63  AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV--ENGTPDTAAMALD 120

Query: 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538
           R   +      L ++    + A  ++E         + A  +   S +     + ++A  
Sbjct: 121 RAGKLME-PLDLSKAVHLYQQAAAVFEN---EERLRQAAELIGKASRLLVRQQKFDEAAA 176

Query: 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            LQK   +Y +      T         ++     +Y  +    + + S
Sbjct: 177 SLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 38/300 (12%), Positives = 87/300 (29%), Gaps = 67/300 (22%)

Query: 443 LSLSRYDEAGFAYQKALTAFKTN---KGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
           ++  +  EA     KA    KT+      ++ + AS + + A  +    +L ++K     
Sbjct: 2   IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61

Query: 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559
               +            A        + + +  + +A++ ++KA  +Y +         G
Sbjct: 62  EAEAHANNRS---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--------G 110

Query: 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619
                 +     G   +  D                                    +++A
Sbjct: 111 TPDTAAMALDRAGKLMEPLD------------------------------------LSKA 134

Query: 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE----- 674
           V L+++A ++ E E          +    +       + D+A   L+    + +E     
Sbjct: 135 VHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192

Query: 675 -------KLGT---ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIE 724
                            D    ++ + E     G   S    +LE LL A    + + + 
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLL 252

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 11/179 (6%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             ++A +  L+ A++     N +              +   L +  EA+  +E++  +  
Sbjct: 51  QLEQAKDAYLQEAEAHA---NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-Y 106

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
           +E G     A      + G        L  ++  Y     V +    E   +  E     
Sbjct: 107 VENGTPDTAAMA--LDRAGKLMEP-LDLSKAVHLYQQAAAVFEN--EERLRQAAELIGKA 161

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           +   V+  +F EA    Q    ++K+  +  +  +        L+   + D+ AA + +
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA--QVLVQLHRADYVAAQKCV 218

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 13/150 (8%)

Query: 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEA 284
           L +A +L+   D   KA+ L  +AA  FE     +        +   + +     +++EA
Sbjct: 119 LDRAGKLMEPLD-LSKAVHLYQQAAAVFE--NEERLRQA-AELIGKASRLLVRQQKFDEA 174

Query: 285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344
              L++   +   E        K    +              +  C      +     G 
Sbjct: 175 AASLQKEKSM-YKEMENYPTCYKK--CIAQVLVQLHRADYVAAQKCVRESYSIP----GF 227

Query: 345 TDPRVGETCRYLAEAHVQ--ALQFSEAQKF 372
           +          L +A+ +    Q     + 
Sbjct: 228 SGSEDCAALEDLLQAYDEQDEEQLLRVCRS 257

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 52/295 (17%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T         A  A Q+ L        E  P      + LA  Y  T   +++    +
Sbjct: 106 GITQAENENEQAAIVALQRCL--------ELQPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
           N ++   K         +         +   M++      +L+   ++Y +A  Q   + 
Sbjct: 158 NWIKQNPKYK------YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211

Query: 559 GIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVALNQMGLAC 610
             + Q  +GV++++ G ++ + D+F  A+         +   +      G  L       
Sbjct: 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAAL-------TVRPEDYSLWNRLGATLANGD--- 261

Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670
             R    EAVE +  A  I         P  +    NL  +   +G   +A+      + 
Sbjct: 262 --RS--EEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

Query: 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEL 725
           +             ++++     +        R A SL    +     N   +++
Sbjct: 310 L--------QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 45/321 (14%), Positives = 88/321 (27%), Gaps = 43/321 (13%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                   G     I  +E +I   P        A A       LG T A     + +++
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDP------GDAEA----WQFLGITQAENENEQAAIV 120

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
                LE+         P   +    LA ++       +A +  +  +  +         
Sbjct: 121 ALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172

Query: 390 EEAADRRL--MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
           ++ +      M          E   E  + A       + D     +   +G  +     
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEA----AHQNGDMIDPDLQTGLGVLFHLSGE 228

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507
           ++ A  A+  AL           P   S++ RL        +  E+      AL I  +P
Sbjct: 229 FNRAIDAFNAAL--------TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QP 278

Query: 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQMGV 566
                         ++     ++    +A+     AL +       QQ     I   +  
Sbjct: 279 -------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331

Query: 567 MYYMLGNYSDSYDSFKNAISK 587
              +  +  D  + F+ A   
Sbjct: 332 ALRIALSLMDQPELFQAANLG 352

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 16/140 (11%)

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           + S N+  Q    +  + K Y               + G+     G+   +    + AI 
Sbjct: 34  WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAI- 92

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646
                  +       A   +G+   +  +   A+   +    +         P+ L    
Sbjct: 93  ------LQDPGDA-EAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALM 137

Query: 647 NLAGTYDAIGRLDDAIEILE 666
            LA +Y       DA E L+
Sbjct: 138 ALAVSYTNTSHQQDACEALK 157

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 15/136 (11%)

Query: 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590
            E E+A   ++   + ++     Q+    +  +  +          +  + +        
Sbjct: 3   MEFERAKAAVESDTEFWDKM---QAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTE 59

Query: 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
              +          + GL  ++   +   +   E A   + Q+  P   +    +  L  
Sbjct: 60  NPFKDWP----GAFEEGLKRLKEGDLPVTILFMEAA---ILQD--PGDAE---AWQFLGI 107

Query: 651 TYDAIGRLDDAIEILE 666
           T         AI  L+
Sbjct: 108 TQAENENEQAAIVALQ 123

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 41/303 (13%), Positives = 89/303 (29%), Gaps = 65/303 (21%)

Query: 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI-GDTYLSLSRYDEAGFAYQKAL 459
           +  +   H  +               + + +AS+              Y++A  A+ KA+
Sbjct: 1   MGSSHHHHHHSSG----------LVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI 50

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519
                   E +   A  ++  A++ +   +L  + ++ + AL +             A+ 
Sbjct: 51  --------EENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DS-------SAATA 93

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSD 576
                ++Y      ++A  + +KAL+    +           +    +G +   L     
Sbjct: 94  YYGAGNVYVVKEMYKEAKDMFEKALRAGMENG----------DLFYMLGTVLVKLEQPKL 143

Query: 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
           +    + A+       E        A  Q G+       ++EA+  F             
Sbjct: 144 ALPYLQRAV-------ELNENDT-EARFQFGMCLANEGMLDEALSQFAAVTEQ------- 188

Query: 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
             P     + N   TY      + A+E+L+  + I         PD          L   
Sbjct: 189 -DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--------QPDHMLALHAKKLLGHH 239

Query: 697 AGR 699
              
Sbjct: 240 HHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 35/308 (11%), Positives = 81/308 (26%), Gaps = 78/308 (25%)

Query: 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
           S   ++ +  ++ +   +         ++       Q     +  G  E +   +T  +E
Sbjct: 4   SHHHHHHSSGLVPRGSHM--------ASMT----GGQQMGRGSEFGDYEKAAEAFTKAIE 51

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD------NGSPASLE 390
                    +          A       +   A  F   AL++                 
Sbjct: 52  E--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG------- 96

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYD 449
                   G +   K  ++ A +    A    +    ++ ++      +G   + L +  
Sbjct: 97  -------AGNVYVVKEMYKEAKDMFEKA----LRAGMENGDLF---YMLGTVLVKLEQPK 142

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
            A    Q+A+        E +        +        G L E+ S           P  
Sbjct: 143 LALPYLQRAV--------ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DP-- 190

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI-YNDAPGQQSTVAGIEAQ--MGV 566
                  A    +    Y      E+A+++L KA+ I  +             A     +
Sbjct: 191 -----GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM----------LALHAKKL 235

Query: 567 MYYMLGNY 574
           + +   ++
Sbjct: 236 LGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 44/225 (19%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
            + +A +    A++ +K++        A        +  +  + E AL     A    + 
Sbjct: 38  DYEKAAEAFTKAIEENKED--------AIPYINFANLLSSVNELERALAFYDKA----LE 85

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
            D  A  A      G+ Y+    Y EA   ++KAL                +F  L  + 
Sbjct: 86  LDSSAATAY--YGAGNVYVVKEMYKEAKDMFEKAL-RAG-------MENGDLFYMLGTVL 135

Query: 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544
            +  + + +  Y + A+ +                         +   L++A+       
Sbjct: 136 VKLEQPKLALPYLQRAVEL--NE-------NDTEARFQFGMCLANEGMLDEALSQFAAVT 186

Query: 545 KIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAIS 586
           +     A          +A    GV Y    N   + +    AI 
Sbjct: 187 EQDPGHA----------DAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 35/191 (18%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
            A +  S+ +   A+   ++++E+          A A    +   G+ Y +    + +  
Sbjct: 63  FANLLSSVNELERALAFYDKALELDS------SAATA----YYGAGNVYVVKEMYKEAKD 112

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
            +   L              G+    L    V+  Q   A  + Q A+++++++      
Sbjct: 113 MFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------ 158

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRY 448
            EA  +   G+    +G  + AL             +   A+      + G TY      
Sbjct: 159 TEARFQF--GMCLANEGMLDEALSQFAAV----TEQDPGHADAFY---NAGVTYAYKENR 209

Query: 449 DEAGFAYQKAL 459
           ++A     KA+
Sbjct: 210 EKALEMLDKAI 220

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 27/222 (12%), Positives = 64/222 (28%), Gaps = 30/222 (13%)

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
            +++EA     +A T ++    +        F++ AD   + G   E+ +    A + ++
Sbjct: 31  YKFEEAADLCVQAATIYR--LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK 88

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
                                         A+  L+ A++I+    GQ    A  + ++G
Sbjct: 89  S-----------------------GGNSVNAVDSLENAIQIFTHR-GQFRRGANFKFELG 124

Query: 566 VMYYM-LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624
            +    L +Y+ + D ++ A            +       +            EA +++ 
Sbjct: 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK--CFIKCADLKALDGQYIEASDIYS 182

Query: 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           +                   +        A      A   L+
Sbjct: 183 KLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 20/244 (8%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           E A +       Y      + AG ++ KA    K     N     + +V     +   G 
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGN 92

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYN 548
              +    ENA++I+            A+   ++  I E+ +++  +AI   + A + Y 
Sbjct: 93  SVNAVDSLENAIQIFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149

Query: 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
                 +       +   +  + G Y ++ D +   I         + +     L   GL
Sbjct: 150 Q-DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK-KGL 207

Query: 609 ACVQRYSINEAVELFEEARSI------------LEQECGPYHPDTLGVYSNLAGTYDAIG 656
             +       A    +E +S             L+      +       S     +D   
Sbjct: 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267

Query: 657 RLDD 660
           RLD 
Sbjct: 268 RLDK 271

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 33/238 (13%), Positives = 68/238 (28%), Gaps = 14/238 (5%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           Q    Y +  +L  +   +    + QK+   E +   G T     +          A   
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE--AGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 373 CQMALDIHKDNGSPASLEEAADR-RLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE 430
            + A+ I    G        A+    +G I E    D+  A++   LA      +   A 
Sbjct: 100 LENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                    D      +Y EA   Y K + +   N+     ++   F++           
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDA 215

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKI 546
             +    +          P       ++ L  +       +  +L +  K     +++
Sbjct: 216 VAAARTLQEGQSED----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 41/236 (17%)

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRI-------YEKPVPGVPPEEIASGLTDVSSI 526
               ++        G+  ++ SY    + +       Y         E  +   T+++  
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           Y+     ++A    ++ L+   +                 M    G   D+   ++  + 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNN-------VDCLEACAEMQVCRGQEKDALRMYEKIL- 115

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGVY 645
                 + ++     A   +G           + +E   +  S                 
Sbjct: 116 ------QLEADNLA-ANIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK--RRLAELLKEAGR 699
                +     R + A   L+ V+           P  + +K   ++  + KE  R
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILR--------FPSTEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 34/200 (17%)

Query: 224 LLKQARELISSGDNPQ------KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277
           +L++    I +G N Q      + + L +   + +      K S         +A  Y  
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 278 LGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
              Y++A    ++ ++  P       +            +     GQ +++L  Y     
Sbjct: 67  NRNYDKAYLFYKELLQKAP------NNVDC----LEACAEMQVCRGQEKDALRMY----- 111

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADR 395
             +++L + +        +L   +    +   +  +     L            + A  R
Sbjct: 112 --EKIL-QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM------QYA--R 160

Query: 396 RLMGLICETKGDHEAALEHL 415
              GL       +E A   L
Sbjct: 161 YRDGLSKLFTTRYEKARNSL 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 21/206 (10%), Positives = 56/206 (27%), Gaps = 32/206 (15%)

Query: 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN--------GSPASLEEAADRRLMGLIC 402
           +       A ++A Q  +A  + +  + ++ D             S   +     + L  
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64

Query: 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462
           +   +++ A           +    +        +  +  +   +  +A   Y+K L   
Sbjct: 65  KKNRNYDKAYLFYKEL----LQKAPNNVDCLE--ACAEMQVCRGQEKDALRMYEKIL--- 115

Query: 463 KTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
                +      +  + L +  Y    + ++        L           P ++     
Sbjct: 116 -----QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---------PTKMQYARY 161

Query: 522 DVSSIYESMNELEQAIKLLQKALKIY 547
                       E+A   LQK +  +
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRF 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.9 bits (159), Expect = 6e-12
 Identities = 42/245 (17%), Positives = 74/245 (30%), Gaps = 68/245 (27%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G    +L RYD A   +++AL        + +P        LA    + G +  +    
Sbjct: 11  LGVQLYALGRYDAALTLFERAL--------KENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 498 ENALRI--------------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543
           +  +                Y          E   G             LEQA+ +L+ A
Sbjct: 63  KTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG------------YLEQALSVLKDA 110

Query: 544 LKIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF- 599
            ++    A              Q G++Y +LG    +  S K A+    A+ +       
Sbjct: 111 ERVNPRYA----------PLHLQRGLVYALLGERDKAEASLKQAL----ALEDTPEIRSA 156

Query: 600 -GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL 658
                  MG     R   +EA+  + +A            P  L +    A      G+ 
Sbjct: 157 LAELYLSMG-----RL--DEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201

Query: 659 DDAIE 663
           ++A  
Sbjct: 202 EEAAR 206

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 47/245 (19%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           +     +LG+Y+ A+ + E++++  P      +   A       L  T   LG +  +L 
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENP------QDPEA----LYWLARTQLKLGLVNPALE 60

Query: 330 CYTTGLEVQKQV------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
              T +    +       L E         R   +         +A    + A  ++   
Sbjct: 61  NGKTLVARTPRYLGGYMVLSEA---YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443
                      +   GL+    G+ + A   L  A    +A +   E+ S   ++ + YL
Sbjct: 118 A------PLHLQ--RGLVYALLGERDKAEASLKQA----LALEDTPEIRS---ALAELYL 162

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES-KSYCENALR 502
           S+ R DEA   Y KAL        E  P    + VR A      GK  E+ ++    AL 
Sbjct: 163 SMGRLDEALAQYAKAL--------EQAPKDLDLRVRYASALLLKGKAEEAARAA---ALE 211

Query: 503 IYEKP 507
            +   
Sbjct: 212 HHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 42/246 (17%), Positives = 76/246 (30%), Gaps = 49/246 (19%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
            ++LG     LG+ + +L  +   L+         +P+  E   +LA   ++    + A 
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPAL 59

Query: 371 KFCQMALDIHKDNGSPASLEEA---------ADRRLMGLICETKGDHEAALEHLVLASMT 421
           +  +  +                        A  R        KG  E AL  L  A   
Sbjct: 60  ENGKTLVARTPRY------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA--- 110

Query: 422 MIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480
               N + A +       G  Y  L   D+A  + ++AL A +            +   L
Sbjct: 111 -ERVNPRYAPLHL---QRGLVYALLGERDKAEASLKQAL-ALEDT--------PEIRSAL 157

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
           A++Y   G+L E+ +    AL     P       +        +S      + E+A +  
Sbjct: 158 AELYLSMGRLDEALAQYAKALEQ--AP-------KDLDLRVRYASALLLKGKAEEAARAA 208

Query: 541 QKALKI 546
                 
Sbjct: 209 ALEHHH 214

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 1e-11
 Identities = 57/434 (13%), Positives = 105/434 (24%), Gaps = 73/434 (16%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
           ++ALE   R            P  + V+ +        +L      +PVL Q+  +    
Sbjct: 405 KQALETVQRLLPVLCQAHGLTP--DQVVAIASHDGGKQALETVQRLLPVLCQTHGL---- 458

Query: 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358
                 +A              L  ++         L V  Q  G T  +V         
Sbjct: 459 -TPAQVVA----IASHDGGKQALETVQ-------QLLPVLCQAHGLTPDQV-VAIASNIG 505

Query: 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418
                            A  +  D                G   +     +  L  L  A
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQ--------VVAIASNGGGKQALETVQRLLPVLCQA 557

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478
                    D  VA    S G    +L           +A              VA    
Sbjct: 558 ----HGLTPDQVVAI--ASNGGGKQALETVQRLLPVLCQAH-GLTQV-----QVVA---- 601

Query: 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538
                       +++    +  L +  +     P + +A           S +  +QA++
Sbjct: 602 -----IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA---------IASHDGGKQALE 647

Query: 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598
            +Q+ L +   A G         A  G     L            A              
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLTQEQ 700

Query: 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL 658
             VA+           ++   + +  +A  +         PD +   ++  G   A+  +
Sbjct: 701 V-VAIASNNGGKQALETVQRLLPVLCQAHGL--------TPDQVVAIASNGGGKQALETV 751

Query: 659 DDAIEILEFVVGIR 672
              + +L    G+ 
Sbjct: 752 QRLLPVLCQAHGLT 765

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.4 bits (151), Expect = 4e-10
 Identities = 55/444 (12%), Positives = 108/444 (24%), Gaps = 81/444 (18%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
            Q   + S+    ++ALE   R            P    V+ +        +L      +
Sbjct: 190 AQVVAIASNN-GGKQALETVQRLLPVLCQAHGLTP--AQVVAIASHDGGKQALETMQRLL 246

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           PVL Q+  +P      +  +A              L  ++  L        +        
Sbjct: 247 PVLCQAHGLP-----PDQVVA----IASNIGGKQALETVQRLLPVLCQAHGL-------- 289

Query: 346 DPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
            P              QAL            A  +     +P  +   A         + 
Sbjct: 290 TPDQVVAIASHGGGK-QALETVQRLLPVLCQAHGL-----TPDQVVAIASH---DGGKQA 340

Query: 405 KGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
               +  L  L  A               +   S G    +L           +A     
Sbjct: 341 LETVQRLLPVLCQA----HGLTPDQVVAIA---SNGGGKQALETVQRLLPVLCQAH-GLT 392

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT-D 522
            ++                     G  +  ++  +  L +  +          A GLT D
Sbjct: 393 PDQ--------------VVAIASNGGKQALETV-QRLLPVLCQ----------AHGLTPD 427

Query: 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582
                 S +  +QA++ +Q+ L +     G         A        L           
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC 487

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A           +    VA+           ++   + +  +A  +         PD +
Sbjct: 488 QAH--------GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL--------TPDQV 531

Query: 643 GVYSNLAGTYDAIGRLDDAIEILE 666
              ++  G   A+  +   + +L 
Sbjct: 532 VAIASNGGGKQALETVQRLLPVLC 555

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.0 bits (150), Expect = 5e-10
 Identities = 58/437 (13%), Positives = 112/437 (25%), Gaps = 78/437 (17%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             ++ALE   R                 V+ +        +L      +PVL Q      
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQ--VQVVAIASNIGGKQALETVQRLLPVLCQ-----A 625

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
                   +A              L  ++  L        +                   
Sbjct: 626 HGLTPAQVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPD---------------Q 666

Query: 357 AEAHVQALQFSEAQKFCQMALDIH-KDNG-SPASLEEAADRRLMGLICETKGDHEAALEH 414
             A        +A +  Q  L +  + +G +   +   A         +     +  L  
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN---NGGKQALETVQRLLPV 723

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L  A         D  VA    S G    +L           +A       +        
Sbjct: 724 LCQA----HGLTPDQVVA--IASNGGGKQALETVQRLLPVLCQAH-GLTPAQVVAI---- 772

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
                     +  G         + AL   ++ +P +  +   + L  V +I  ++   +
Sbjct: 773 ---------ASNIG--------GKQALETVQRLLPVLCQDHGLT-LAQVVAIASNIG-GK 813

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
           QA++ +Q+ L +   A G         A        L                       
Sbjct: 814 QALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDH--------- 864

Query: 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654
                G+  +Q  +A        +A+E  +    +L Q+ G      + + SN  G   A
Sbjct: 865 -----GLTPDQ-VVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN--GGKQA 916

Query: 655 IGRLDDAIEILEFVVGI 671
           +  +   + +L    G+
Sbjct: 917 LETVQRLLPVLCQDHGL 933

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 6e-07
 Identities = 27/233 (11%), Positives = 63/233 (27%), Gaps = 40/233 (17%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
                +L           +A       +                  +  G  +  ++  +
Sbjct: 199 NGGKQALETVQRLLPVLCQAH-GLTPAQVVAI-------------ASHDGGKQALETM-Q 243

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
             L +  +   G+PP+++ +          S    +QA++ +Q+ L +   A G      
Sbjct: 244 RLLPVLCQ-AHGLPPDQVVA--------IASNIGGKQALETVQRLLPVLCQAHGLTPDQV 294

Query: 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618
              A  G     L            A                VA+           ++  
Sbjct: 295 VAIASHGGGKQALETVQRLLPVLCQAH-------GLTPDQV-VAIASHDGGKQALETVQR 346

Query: 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671
            + +  +A  +         PD +   ++  G   A+  +   + +L    G+
Sbjct: 347 LLPVLCQAHGL--------TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 391

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 16/146 (10%)

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
             S N  +QA++ +Q+ L +   A G         A        L            A  
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH- 253

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646
                         VA+           ++   + +  +A  +         PD +   +
Sbjct: 254 ------GLPPDQV-VAIASNIGGKQALETVQRLLPVLCQAHGL--------TPDQVVAIA 298

Query: 647 NLAGTYDAIGRLDDAIEILEFVVGIR 672
           +  G   A+  +   + +L    G+ 
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLT 324

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 50/316 (15%), Positives = 92/316 (29%), Gaps = 46/316 (14%)

Query: 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411
                  AH+ AL    +Q    +            +L EA    ++G+  +  G    A
Sbjct: 82  VGHGFTHAHIVAL----SQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGAR--A 135

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
           LE L+  +  +       +   +   +           EA  A + ALT    N      
Sbjct: 136 LEALLTDAGELRGPPLQLDTGQL---VKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT-DVSSIYESM 530
                      + +  G  +  ++  +  L +  +          A GLT        S 
Sbjct: 193 VA---------IASNNGGKQALETV-QRLLPVLCQ----------AHGLTPAQVVAIASH 232

Query: 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590
           +  +QA++ +Q+ L +   A G         A        L            A      
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH----- 287

Query: 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
                     VA+   G          +A+E  +    +L Q  G   PD +   ++  G
Sbjct: 288 --GLTPDQV-VAIASHGGG-------KQALETVQRLLPVLCQAHG-LTPDQVVAIASHDG 336

Query: 651 TYDAIGRLDDAIEILE 666
              A+  +   + +L 
Sbjct: 337 GKQALETVQRLLPVLC 352

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 30/270 (11%), Positives = 65/270 (24%), Gaps = 53/270 (19%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
                  +G H           +       +A        +G  YL     ++A    +K
Sbjct: 10  HSSGLVPRGSHMGDQ-----NPLKTDKGRDEA--RDAYIQLGLGYLQRGNTEQAKVPLRK 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           AL        E  P+ A     LA ++    + + +      AL               A
Sbjct: 63  AL--------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DS-------RNA 105

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALK--IYNDAPGQQSTVAGIEAQ--MGVMYYMLGN 573
             L +           E+A + L +A +  +Y +                +G++   +  
Sbjct: 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS---------RVFENLGLVSLQMKK 156

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
            + + + F+ ++                   +M     +      A + ++         
Sbjct: 157 PAQAKEYFEKSL-------RLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQG---- 204

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                                    D A  
Sbjct: 205 ----GGQNARSLLLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 44/219 (20%)

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
           ++       KT+K          +++L   Y + G   ++K     AL            
Sbjct: 19  SHMGDQNPLKTDK--GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL------------ 64

Query: 514 EEIASGLTDVSS----IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ--MGVM 567
            EI     D  +    ++++  E + A +  +KAL   +                  G  
Sbjct: 65  -EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---------RVLNNYGGF 114

Query: 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627
            Y    Y ++Y     A                     +GL  +Q     +A E FE++ 
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPE------RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168

Query: 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
            +        + +   V   +A           A +  +
Sbjct: 169 RL--------NRNQPSVALEMADLLYKEREYVPARQYYD 199

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 35/177 (19%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y      EQA   L+KAL+I  + A          +A   + V++        + + ++
Sbjct: 46  GYLQRGNTEQAKVPLRKALEIDPSSA----------DAHAALAVVFQTEMEPKLADEEYR 95

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A++          +     LN  G    ++    EA +   EA    +      +P+  
Sbjct: 96  KALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEA---SQD---TLYPERS 141

Query: 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
            V+ NL      + +   A E  E  + +        N +       +A+LL +   
Sbjct: 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 23/142 (16%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                   +Y EA   L ++ +  +     E +         LG     + +   +   +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTL---YPERSRV----FENLGLVSLQMKKPAQAKEYF 164

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              L +        +         +A+   +  ++  A+++  +       N    SL  
Sbjct: 165 EKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN--ARSL-- 212

Query: 392 AADRRLMGLICETKGDHEAALE 413
                L   + +   D + A  
Sbjct: 213 ----LLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 36/281 (12%), Positives = 78/281 (27%), Gaps = 82/281 (29%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
              Y   G   +A   L +++EI P        A A    H  L   +    + +     
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDP------SSADA----HAALAVVFQTEMEPK----- 88

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                                                 A +  + AL     N       
Sbjct: 89  -------------------------------------LADEEYRKALASDSRNA------ 105

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
                   G     +  +E A + L+ A      +    E + V  ++G   L + +  +
Sbjct: 106 RV--LNNYGGFLYEQKRYEEAYQRLLEA----SQDTLYPERSRVFENLGLVSLQMKKPAQ 159

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510
           A   ++K+L          +    SV + +AD+  +  +   ++ Y +   +        
Sbjct: 160 AKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GG--- 206

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551
               + A  L     + +   + + A     +  ++Y  + 
Sbjct: 207 ----QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 32/191 (16%)

Query: 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568
           PG  P   A  L ++++I      +E+A++L +KAL+++ +     S        +  + 
Sbjct: 2   PGSCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS-------NLASVL 53

Query: 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628
              G   ++   +K AI             F  A + MG    +   +  A++ +  A  
Sbjct: 54  QQQGKLQEALMHYKEAIRISPT--------FADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

Query: 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688
           I        +P     +SNLA  +   G + +AI      + +         PD  D   
Sbjct: 106 I--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYC 149

Query: 689 RLAELLKEAGR 699
            LA  L+    
Sbjct: 150 NLAHCLQIVCD 160

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.0 bits (147), Expect = 9e-10
 Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 42/243 (17%)

Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
           P  A     LA++    G + E+      AL ++    P                + +  
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLAS-----VLQQQ 56

Query: 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590
            +L++A+   ++A++I           A   + MG     + +   +   +  AI    A
Sbjct: 57  GKLQEALMHYKEAIRISPTF-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
             +        A + +        +I EA+  +  A  +         PD    Y NLA 
Sbjct: 110 FAD--------AHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYCNLAH 153

Query: 651 TYDAIGRLDDAIEILEFVVGIREEKL-----GTANPD-----VDDEKRRLAELLKEAGRV 700
               +    D  E ++ +V I  ++L      + +P            R A   +     
Sbjct: 154 CLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLC 213

Query: 701 RSR 703
             +
Sbjct: 214 LDK 216

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 34/262 (12%), Positives = 83/262 (31%), Gaps = 38/262 (14%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +  I   +G+ E A+           A +   E A+   ++        +  EA   Y++
Sbjct: 15  LANIKREQGNIEEAVRLY------RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           A+           P  A  +  + +       ++ +      A++I   P         A
Sbjct: 69  AIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NP-------AFA 111

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
              ++++SI++    + +AI   + ALK+   + DA             +     ++ ++
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC----------NLAHCLQIVCDW 161

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
           +D  +  K  +S +    E+             +     +   +A+        + +   
Sbjct: 162 TDYDERMKKLVSIVADQLEKNR--LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINV 219

Query: 635 GPYHPDTLGVYSNLAGTYDAIG 656
               P        L+     +G
Sbjct: 220 LHKPPYEHPKDLKLSDGRLRVG 241

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 31/215 (14%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +A I    G   EA+ +  +++E+       E A A       L       G+L+ +
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV-----FPEFAAAHS----NLASVLQQQGKLQEA 62

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           LM Y   + +         P   +    +     +      A +    A+ I+       
Sbjct: 63  LMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---- 110

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
               A     +  I +  G+   A+     A   +       +     C++      +  
Sbjct: 111 ----ADAHSNLASIHKDSGNIPEAIASYRTA---LKLKPDFPDAY---CNLAHCLQIVCD 160

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           + +     +K ++       +N          +  
Sbjct: 161 WTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 31/207 (14%)

Query: 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
           + P   ++   LA    +     EA +  + AL++  +  +  S         +  + + 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS--------NLASVLQQ 55

Query: 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
           +G  + AL H   A    I        A    ++G+T   +     A   Y +A+     
Sbjct: 56  QGKLQEALMHYKEA----IRISPTF--ADAYSNMGNTLKEMQDVQGALQCYTRAI----- 104

Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
              + +PA A     LA ++  +G + E+ +    AL++  KP       +      +++
Sbjct: 105 ---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KP-------DFPDAYCNLA 152

Query: 525 SIYESMNELEQAIKLLQKALKIYNDAP 551
              + + +     + ++K + I  D  
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVADQL 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 39/313 (12%), Positives = 77/313 (24%), Gaps = 50/313 (15%)

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLS 446
           S        ++ +  +     E  L  +    +   + +D+ A++       G  Y SL 
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLY---ERGVLYDSLG 57

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   + +AL A +       P +  VF  L     + G    +    ++ L +   
Sbjct: 58  LRALARNDFSQAL-AIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--D 107

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
           P              +           + A   L    +                  + +
Sbjct: 108 P-------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPFRSLWLYL 153

Query: 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626
               L     + +  K    K       +  +  V      ++               + 
Sbjct: 154 AEQKLDEK-QAKEVLKQHFEKSDKE---QWGWNIVEFYLGNISEQTLM--ERLKADATDN 207

Query: 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE 686
            S+                  L   Y ++G LD A  + +  V          N     E
Sbjct: 208 TSL--------AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFVE 251

Query: 687 KRRLAELLKEAGR 699
            R     L   G+
Sbjct: 252 HRYALLELSLLGQ 264

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 40/269 (14%), Positives = 71/269 (26%), Gaps = 42/269 (15%)

Query: 237 NPQKALELAL-RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI- 294
            P    E+ L R  +     A      E    L+    +Y SLG    A     Q++ I 
Sbjct: 16  QPTLQQEVILARMEQILASRALTDD--ERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354
           P      +           LG      G  + +   + + LE+        DP       
Sbjct: 74  P------DMPEV----FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHL 115

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
               A     +   AQ           ++           R L   + E K D + A E 
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPND---------PFRSLWLYLAEQKLDEKQAKEV 166

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L        ++ +      V+  +G+     +  +                       ++
Sbjct: 167 LKQHF--EKSDKEQWGWNIVEFYLGNISE-QTLMERLKADATDNT--------SLAEHLS 215

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRI 503
                L   Y   G L  + +  + A+  
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN 244

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 35/273 (12%), Positives = 75/273 (27%), Gaps = 58/273 (21%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
            G++ ++ G    A      A    +A      EV +    +G        +D A  A+ 
Sbjct: 49  RGVLYDSLGLRALARNDFSQA----LAIRPDMPEVFN---YLGIYLTQAGNFDAAYEAFD 101

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             L        E  P      +         G+ + ++       +      P  P   +
Sbjct: 102 SVL--------ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSL 149

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
              L       E   + +QA ++L++  +  +            +    ++ + LGN S+
Sbjct: 150 WLYLA------EQKLDEKQAKEVLKQHFEKSDK----------EQWGWNIVEFYLGNISE 193

Query: 577 SYDSFKNAISKLRAIGERKS----AFF--GVALNQMGLACVQRYSINEAVELFEEARSIL 630
                +   +                F  G     +G         + A  LF+ A +  
Sbjct: 194 QTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLG-----DL--DSATALFKLAVAN- 244

Query: 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                  +      +         +G+  D + 
Sbjct: 245 -------NVHNFVEHRYALLELSLLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 38/324 (11%), Positives = 73/324 (22%), Gaps = 95/324 (29%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
            V+A       Q    +  +EQ +    + +  E A        + G  Y  LG    + 
Sbjct: 9   EVLAVPLQPTLQQEVILARMEQILASRALTD-DERAQL----LYERGVLYDSLGLRALAR 63

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388
             ++  L +         P        + E                       +      
Sbjct: 64  NDFSQALAI--------RPD-------MPEVF---------------------NY----- 82

Query: 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSR 447
                    +G+     G+ +AA E         +  +           + G       R
Sbjct: 83  ---------LGIYLTQAGNFDAAYEAFDSV----LELDPTYNYAHL---NRGIALYYGGR 126

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR--TGKLRESKSYCENALRIYE 505
              A             N                         +  + K   E   + +E
Sbjct: 127 DKLAQDDLLAFY-QDDPNDPFRS-------------LWLYLAEQKLDEKQAKEVLKQHFE 172

Query: 506 KPVPGVPP-EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA-- 562
           K          +   L ++S        +E+          +              E   
Sbjct: 173 KSDKEQWGWNIVEFYLGNISE----QTLMERLKADATDNTSLAEHLS---------ETNF 219

Query: 563 QMGVMYYMLGNYSDSYDSFKNAIS 586
            +G  Y  LG+   +   FK A++
Sbjct: 220 YLGKYYLSLGDLDSATALFKLAVA 243

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.2 bits (148), Expect = 6e-10
 Identities = 41/287 (14%), Positives = 85/287 (29%), Gaps = 54/287 (18%)

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE 505
             ++     ++ L + +                 A      GK L  +  Y   A  +  
Sbjct: 83  EMEKTLQQMEEVLGSAQVE---------------AQALMLKGKALNVTPDYSPEAEVLLS 127

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           K V   P  E+      +  +Y    ++  A      AL    +    Q         + 
Sbjct: 128 KAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ--------NLS 177

Query: 566 VMYYMLGNYSDSYDSFKN--AISKL-RAIGERKSAFFGVALNQMGLACVQRYS------- 615
           ++   L   S    S     ++ +   A+        G +   +G A +  Y        
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DGRSWYILGNAYLSLYFNTGQNPK 235

Query: 616 -INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674
              +A+  + +A  +  +     +PD   ++ N A  +       +A+E       +   
Sbjct: 236 ISQQALSAYAQAEKVDRKA--SSNPD---LHLNRATLHKYEESYGEALEGFSQAAALDPA 290

Query: 675 ------KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715
                 +       +     RL  LL+  G+ + +K QS+   L   
Sbjct: 291 WPEPQQREQQLLEFLS----RLTSLLESKGKTKPKKLQSMLGSLRPA 333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 33/258 (12%), Positives = 75/258 (29%), Gaps = 31/258 (12%)

Query: 397 LMGLICETKGDH-EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
           L G       D+   A   L  A   +    +  E       +G+ Y        A   +
Sbjct: 107 LKGKALNVTPDYSPEAEVLLSKA---VKLEPELVEAW---NQLGEVYWKKGDVTSAHTCF 160

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
             ALT  K      + ++    ++       +  + +S    + A+++            
Sbjct: 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----VLDGRSW 216

Query: 516 IASG---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYM 570
              G   L+   +  ++    +QA+    +A K+   A       +  +       ++  
Sbjct: 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS------SNPDLHLNRATLHKY 270

Query: 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI- 629
             +Y ++ + F  A            A+      +          +   +E   + +   
Sbjct: 271 EESYGEALEGFSQAA-------ALDPAWPE-PQQREQQLLEFLSRLTSLLESKGKTKPKK 322

Query: 630 LEQECGPYHPDTLGVYSN 647
           L+   G   P  LG   +
Sbjct: 323 LQSMLGSLRPAHLGPCGD 340

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 39/309 (12%), Positives = 91/309 (29%), Gaps = 39/309 (12%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN-EAIPVLEQSIEIPVI 297
           +K L+       S +              L +          Y+ EA  +L +++++   
Sbjct: 85  EKTLQQMEEVLGSAQ---------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-- 133

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
               E   A      QLG+ Y   G + ++  C++  L   K  +   +  +        
Sbjct: 134 ---PELVEA----WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD 186

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                +    ++ +  ++A+ +   +G    +   A   L     +     + AL     
Sbjct: 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246

Query: 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477
           A      + + +    +  +    +     Y EA   + +A            PA     
Sbjct: 247 AEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA--------ALDPAWPEPQ 295

Query: 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537
            R   +     +L        + L    K  P    + +   L   + +    +   Q+ 
Sbjct: 296 QREQQLLEFLSRL-------TSLLESKGKTKP-KKLQSMLGSLRP-AHLGPCGDGRYQSA 346

Query: 538 KLLQKALKI 546
              +  L++
Sbjct: 347 SGQKMTLEL 355

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.5 bits (140), Expect = 9e-10
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 40/210 (19%)

Query: 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           + ND   +V   D   G ++    RY +A    ++          +       V + L  
Sbjct: 1   MGNDDIRQVYYRD--KGISHAKAGRYSQAVMLLEQVY--------DADAFDVDVALHLGI 50

Query: 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
            Y +TG +       E +L     P       +     T +   Y  + + + A+ LL K
Sbjct: 51  AYVKTGAVDRGTELLERSLAD--AP-------DNVKVATVLGLTYVQVQKYDLAVPLLIK 101

Query: 543 ALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599
             +    +             +  +GV    LG + ++ DSFK A+         +    
Sbjct: 102 VAEANPINF----------NVRFRLGVALDNLGRFDEAIDSFKIAL-------GLRPNEG 144

Query: 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629
                 +  +  Q     EA+  F++A  +
Sbjct: 145 K-VHRAIAFSYEQMGRHEEALPHFKKANEL 173

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 36/192 (18%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
            G+     G +  A+  L          +  D +VA     +G  Y+     D      +
Sbjct: 14  KGISHAKAGRYSQAVMLLEQV----YDADAFDVDVA---LHLGIAYVKTGAVDRGTELLE 66

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           ++L A         P    V   L   Y +  K   +             P         
Sbjct: 67  RSL-ADA-------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NP-------IN 109

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNY 574
            +    +    +++   ++AI   + AL +  +           +    +   Y  +G +
Sbjct: 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG---------KVHRAIAFSYEQMGRH 160

Query: 575 SDSYDSFKNAIS 586
            ++   FK A  
Sbjct: 161 EEALPHFKKANE 172

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.9 bits (110), Expect = 9e-06
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 35/191 (18%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
               +   G+Y++A+ +LEQ  +                   + LG  Y   G ++    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADA------FDVDV----ALHLGIAYVKTGAVDRGTE 63

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
                L           P   +    L   +VQ  ++  A        + +  N      
Sbjct: 64  LLERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------ 109

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRY 448
                R  +G+  +  G  + A++   +A    +     + +V     +I  +Y  + R+
Sbjct: 110 FNVRFR--LGVALDNLGRFDEAIDSFKIA----LGLRPNEGKVHR---AIAFSYEQMGRH 160

Query: 449 DEAGFAYQKAL 459
           +EA   ++KA 
Sbjct: 161 EEALPHFKKAN 171

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 27/216 (12%), Positives = 53/216 (24%), Gaps = 8/216 (3%)

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
           +     +    D E                RY E        L   + +           
Sbjct: 60  IIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP--EFQQFLQW 117

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
              +A    +           +  L      +       I + +   ++IY     L++ 
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI---ANIYAENGYLKKG 174

Query: 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
           I L ++ LK        +     +        Y+   Y +S      AI     I     
Sbjct: 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA- 233

Query: 597 AFFGVALNQMGLACVQRYSINEAVE-LFEEARSILE 631
              G    Q G    +       +E  +++A    +
Sbjct: 234 -LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 19/177 (10%), Positives = 48/177 (27%), Gaps = 4/177 (2%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +      K D+E  +  L       +      +   ++ +I + Y       +    +++
Sbjct: 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
            L   +    +N      V    A       +  ES      A+ I  +         I 
Sbjct: 181 ILKQLE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIG 236

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
                       +   E  I+   K    + D     +    +  ++  + +   ++
Sbjct: 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHHHH 293

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 17/153 (11%), Positives = 43/153 (28%), Gaps = 4/153 (2%)

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
            E      D   +       ++    +   LK     P +       +  +        +
Sbjct: 72  IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVD 130

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
           Y       K  +++     +     +    N +     +   + + ++LFE+    LE  
Sbjct: 131 YEYCILELKKLLNQQLTGIDVYQNLY--IENAIANIYAENGYLKKGIDLFEQILKQLEAL 188

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                   + V  N A       R ++++  + 
Sbjct: 189 -HDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 47/258 (18%)

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
           E+  + +        QL   Y        +       L+         DP+        A
Sbjct: 2   EKANQVSNI----KTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRA 49

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-CETKGDHEAALEHLV 416
           E +       +AQ+  + AL I  D+       E  +    G   C        ++ +  
Sbjct: 50  EIYQYLKVNDKAQESFRQALSIKPDSA------EINNN--YGWFLCGRLNRPAESMAYFD 101

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
            A    +A+         + + G       ++  A    +++L A         P     
Sbjct: 102 KA----LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPA 149

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
           F  LA      G+L ++  Y +         V  +  +++  G             L  A
Sbjct: 150 FKELARTKMLAGQLGDADYYFKKYQSR----VEVLQADDLLLGWKI-------AKALGNA 198

Query: 537 IKLLQKALKI---YNDAP 551
               +   ++   +  + 
Sbjct: 199 QAAYEYEAQLQANFPYSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 39/199 (19%)

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKN 583
            Y    +  QA   ++ ALK                A      +Y  L     + +SF+ 
Sbjct: 17  EYMRGQDYRQATASIEDALKSDPKNE---------LAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 584 AISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
           A+S                 N  G   C +     E++  F++A +       P +P   
Sbjct: 68  ALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD------PTYPTPY 113

Query: 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702
               N        G+   A   L+  +           P      + LA     AG++  
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGD 165

Query: 703 -----RKAQSLETLLDANS 716
                +K QS   +L A+ 
Sbjct: 166 ADYYFKKYQSRVEVLQADD 184

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 23/237 (9%), Positives = 60/237 (25%), Gaps = 37/237 (15%)

Query: 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
           T            A+R          P++       ++     M +       +Q+ L +
Sbjct: 2   TADGPRELLQLRAAVRHR--------PQD-FVAWLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606
           +              A++G + +    ++++    + A           +         +
Sbjct: 53  HPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQAS--------DAAPEHPGIALWL 97

Query: 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           G A         A   +  A  +         P+   + + L      +        +  
Sbjct: 98  GHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVLSA 149

Query: 667 FVVGIREEKLGTANP-----DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRV 718
            V     + +G   P     +      +LA     A  + +       T + +   +
Sbjct: 150 QVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPL 206

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 33/236 (13%), Positives = 54/236 (22%), Gaps = 41/236 (17%)

Query: 279 GQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
                 +  L  ++   P      +  +A     + L D    +G      M    GL +
Sbjct: 3   ADGPRELLQLRAAVRHRP------QDFVA----WLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397
                    P   E    L        + +EA    Q A D   ++              
Sbjct: 53  --------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH--------PGIALW 96

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +G   E  G  EAA      A         +    +    + +    L  +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRA----HQLLPEEPYIT--AQLLNWRRRLCDWRALDVLSAQ 150

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
              A     G   P         A +        +       A  I     P  P 
Sbjct: 151 VRAAVAQGVGAVEP--------FAFLSEDASAAEQLACARTRAQAIAASVRPLAPT 198

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 24/146 (16%), Positives = 38/146 (26%), Gaps = 23/146 (15%)

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
            D    L  L  A   +    QD         + D  L +        A Q+ L      
Sbjct: 3   ADGPRELLQLRAA---VRHRPQDFVAW---LMLADAELGMGDTTAGEMAVQRGL------ 50

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
               HP       RL  +     +  E+    + A      P       E       +  
Sbjct: 51  --ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--AP-------EHPGIALWLGH 99

Query: 526 IYESMNELEQAIKLLQKALKIYNDAP 551
             E   + E A     +A ++  + P
Sbjct: 100 ALEDAGQAEAAAAAYTRAHQLLPEEP 125

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 30/194 (15%)

Query: 320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379
           M       L+     +           P+       LA+A +     +  +   Q  L +
Sbjct: 1   MTADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439
           H  +              +G +  T+  H  A   L  AS      D   E   +   +G
Sbjct: 53  HPGH--------PEAVARLGRVRWTQQRHAEAAVLLQQAS------DAAPEHPGIALWLG 98

Query: 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
                  + + A  AY +A         +  P    +  +L +   R    R        
Sbjct: 99  HALEDAGQAEAAAAAYTRAH--------QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150

Query: 500 ALRIYEKPVPGVPP 513
                 + V  V P
Sbjct: 151 VRAAVAQGVGAVEP 164

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 31/172 (18%)

Query: 527 YESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           + S    E  ++ LQ  ++    ++           A +G  Y    +YS+S  +++ A+
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQW--------ALLGEYYLWQNDYSNSLLAYRQAL 71

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
              +  GE    +  +A   +      ++   +   + ++A   L  +        L   
Sbjct: 72  ---QLRGENAELYAALA--TVLYYQASQHMTAQTRAMIDKA---LALD--SNEITAL--- 118

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697
             LA           AIE+         +K+   N      + +L E +  A
Sbjct: 119 MLLASDAFMQANYAQAIELW--------QKVMDLNSP-RINRTQLVESINMA 161

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 45/200 (22%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
           ++   +   Q   D      S  + E                  +  +           A
Sbjct: 2   KWQAVRAEYQRQRDPLHQFASQQNPEAQLQAL------------QDKIR----------A 39

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           N Q++E  ++   +G+ YL  + Y  +  AY++AL      +GEN      ++  LA + 
Sbjct: 40  NPQNSEQWAL---LGEYYLWQNDYSNSLLAYRQALQL----RGENA----ELYAALATVL 88

Query: 485 NRTGK---LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
                     ++++  + AL +              + L  ++S         QAI+L Q
Sbjct: 89  YYQASQHMTAQTRAMIDKALAL--DS-------NEITALMLLASDAFMQANYAQAIELWQ 139

Query: 542 KALKIYNDAPGQQSTVAGIE 561
           K + + +    +   V  I 
Sbjct: 140 KVMDLNSPRINRTQLVESIN 159

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 29/141 (20%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y    + ++AI+  QKAL++    A          EA   +G  YY  G+Y ++ + ++
Sbjct: 10  AYYKQGDYDEAIEYYQKALELDPRSA----------EAWYNLGNAYYKQGDYDEAIEYYQ 59

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A+     +          A   +G A  ++   +EA+E +++A  +         P + 
Sbjct: 60  KALE----L---DPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSA 103

Query: 643 GVYSNLAGTYDAIGRLDDAIE 663
             + NL   Y   G  D+AIE
Sbjct: 104 EAWYNLGNAYYKQGDYDEAIE 124

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 40/157 (25%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G+ Y     YDEA   YQKAL        E  P  A  +  L + Y + G   E+  Y 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 58

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI--------YND 549
           + AL +   P         A    ++ + Y    + ++AI+  QKAL++        YN 
Sbjct: 59  QKALEL--DP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN- 108

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
                         +G  YY  G+Y ++ + ++ A+ 
Sbjct: 109 --------------LGNAYYKQGDYDEAIEYYQKALE 131

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
           LG   +A+P  E++I   +  +           ++ LG T+  LG+   +      G++ 
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAEC------YLGLGSTFRTLGEYRKAEAVLANGVKQ 56

Query: 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
                    P       + A       ++ +  +     +    D+ +  S ++A
Sbjct: 57  --------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
           L    +A   Y+KA+ +     G     +A  ++ L   +   G+ R++++   N ++ +
Sbjct: 3   LGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

Query: 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
                   P   A      + +  ++   EQ ++LL K +   +D   
Sbjct: 58  --------PNHQAL-RVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           +AV  +E+A +      G    D    Y  L  T+  +G    A  +L            
Sbjct: 8   QAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVL--------ANGV 54

Query: 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIELCY 727
              P+    +   A +L   GR      Q +E LL   +  ++D     Y
Sbjct: 55  KQFPNHQALRVFYAMVLYNLGRYE----QGVELLLKIIAETSDDETIQSY 100

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G   ++  Y E A+        G+  +++A     + S + ++ E  +A  +L   +K +
Sbjct: 4   GLEAQAVPYYEKAIAS------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            +          +     ++ Y LG Y    +     I++
Sbjct: 58  PNHQA-------LRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)

Query: 406 GDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
           G    A+ +   A    IA   Q  ++A     +G T+ +L  Y +A       +     
Sbjct: 4   GLEAQAVPYYEKA----IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV----- 54

Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
              +  P   ++ V  A +    G+  +        +  
Sbjct: 55  ---KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 21/141 (14%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
            +G   Y  G + D+   F+               +       +G          +A++ 
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALC--------MLDHYDARYFLGLGACRQSLGLYEQALQS 74

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
           +     +          +      + A  +  +G LD A              L  A P 
Sbjct: 75  YSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSAR-----ALAAAQPA 121

Query: 683 VDDEKRRLAELLKEAGRVRSR 703
            +    R   +L+     + R
Sbjct: 122 HEALAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 21/139 (15%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G       ++D+A   +Q                 A  F+ L       G   ++    
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALC--------MLDHYDARYFLGLGACRQSLGLYEQALQSY 75

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
                +         P   A         +  + +L+ A      A  +    P      
Sbjct: 76  SYGALM--DINEPRFPFHAAE-------CHLQLGDLDGAESGFYSARALAAAQP----AH 122

Query: 558 AGIEAQMGVMYYMLGNYSD 576
             + A+ G M   +    D
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 17/126 (13%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +       G++++A  + +    +       +H  A++   + LG     LG  E +
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCML-------DHYDARY--FLGLGACRQSLGLYEQA 71

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           L  Y+ G  +        D        + AE H+Q      A+     A  +     +  
Sbjct: 72  LQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123

Query: 388 SLEEAA 393
           +L   A
Sbjct: 124 ALAARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 20/145 (13%)

Query: 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
             +         E    L     QA ++ +AQK  Q    +   +        A     +
Sbjct: 8   AMLR-GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------ARYFLGL 58

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
           G   ++ G +E AL+     ++    +  +           + +L L   D A   +  A
Sbjct: 59  GACRQSLGLYEQALQSYSYGAL---MDINEPRFP---FHAAECHLQLGDLDGAESGFYSA 112

Query: 459 LTAFKTNKGENHPAVASVFVRLADM 483
                       PA  ++  R   M
Sbjct: 113 R-----ALAAAQPAHEALAARAGAM 132

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 42/310 (13%), Positives = 87/310 (28%), Gaps = 57/310 (18%)

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           G ++  +          +           D  +   YL+  +Y          L   K +
Sbjct: 13  GSYQQCINEA-----QRVKPSSPERDVERDVFLYRAYLAQRKYGVV-------LDEIKPS 60

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
                 AV       A+          S S  +  +   ++ +         + L   +S
Sbjct: 61  SAPELQAVRM----FAEYL-------ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAAS 109

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IY      + A++ L +   +               A    +   L     +    K   
Sbjct: 110 IYFYDQNPDAALRTLHQGDSLE------------CMAMTVQILLKLDRLDLARKELKKMQ 157

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            +     +  +    +A   + LA      + +A  +F+E               TL + 
Sbjct: 158 DQ-----DEDATLTQLATAWVSLA-AGGEKLQDAYYIFQEMADK--------CSPTLLLL 203

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           +  A  + A GR + A  +L+  +          +    +    L  L +  G+      
Sbjct: 204 NGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTN 255

Query: 706 QSLETLLDAN 715
           + L  L DA+
Sbjct: 256 RYLSQLKDAH 265

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 25/255 (9%), Positives = 59/255 (23%), Gaps = 45/255 (17%)

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
           P+S  E    R+      +    +A +  L       ++   D    +        Y   
Sbjct: 59  PSSAPELQAVRMFAEYLASHSRRDAIVAELDRE----MSRSVDVTNTTFLLMAASIYFYD 114

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
              D A     +  +                      +  +  +L  ++   +       
Sbjct: 115 QNPDAALRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQD- 160

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
                   +   + L        +   L    + LQ A  I+ +   + S    +     
Sbjct: 161 -------EDATLTQL------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV-ELFE 624
             +   G +  +    + A+         K +     L  + +         E       
Sbjct: 208 ACHMAQGRWEAAEGVLQEAL--------DKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259

Query: 625 EARSILEQECGPYHP 639
           + +          HP
Sbjct: 260 QLKDA-----HRSHP 269

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 25/156 (16%)

Query: 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543
           +N      + K + + AL  +            +    ++  +Y  +  + +A K   ++
Sbjct: 10  WNEGVLAADKKDW-KGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRS 63

Query: 544 LKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRA--------IGE 593
           +                 A  Q G++YY    Y  +    K A+ +LR         +G 
Sbjct: 64  INRDKHLA---------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           +   F    L  +     ++    +A E    A S+
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            G++   K D + AL+            D  + +     +IG  Y  L    EA  A+ +
Sbjct: 12  EGVLAADKKDWKGALDAFSAV------QDPHSRIC---FNIGCMYTILKNMTEAEKAFTR 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE-------KPVPG 510
           ++             +A  + +   +Y +T K   +    + AL           K +  
Sbjct: 63  SI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
                    L +++ +Y    E ++A + L  A  + ++
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 42/162 (25%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
             +      +  A+       +         H+         +G  Y +L  +  +   +
Sbjct: 13  GVLAADKKDWKGALDAFSAVQDP--------HSRI----CFNIGCMYTILKNMTEAEKAF 60

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---AL----QFSEAQKFCQMALDIHKDNG 384
           T  +          D        +LA A+ Q         ++  A K  + AL   + N 
Sbjct: 61  TRSINR--------DK-------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105

Query: 385 SPASLEEAADRRL--------MGLICETKGDHEAALEHLVLA 418
                      +L        +  +   K + + A E L LA
Sbjct: 106 LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 21/151 (13%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLEL----VMCLHVIAAIYCSLGQYNEAIPVLEQSI 292
           N  +   ++     +   GA  K    +    +  ++  A  + + G+  EA        
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352
                    +     +   M L   Y +  Q + +   Y     +               
Sbjct: 64  IY-------DFYNVDY--IMGLAAIYQIKEQFQQAADLYAVAFAL--------GKNDYTP 106

Query: 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
             +  +  ++     +A++  ++ +    D 
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 37/180 (20%)

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDS 577
           +T+  SI  ++ +   +   L+    I +D          ++        +Y  G   ++
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDM---------MDDIYSYAYDFYNKGRIEEA 55

Query: 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637
              F+               +    +  +      +    +A +L+  A ++        
Sbjct: 56  EVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-------- 99

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697
             +      +       +     A E  E V+              D++ +  A+   +A
Sbjct: 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN----------DEKLKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 17/148 (11%), Positives = 35/148 (23%), Gaps = 19/148 (12%)

Query: 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL-----MGLICETKGDHEAALEHLVL 417
           +L  +E +      +D      +   +    D  +            KG  E A      
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477
             +       D         +   Y    ++ +A   Y  A    K +         +  
Sbjct: 62  LCI------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--------YTPV 107

Query: 478 VRLADMYNRTGKLRESKSYCENALRIYE 505
                   R     ++K   E  ++   
Sbjct: 108 FHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 17/126 (13%)

Query: 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
           S    + +  R +EA   ++                     + LA +Y    + +++   
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADL 92

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556
              A  +        P                 +    +A +  +  ++  ND   +   
Sbjct: 93  YAVAFAL--GKNDYTPVFHTGQ-------CQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143

Query: 557 VAGIEA 562
            + ++A
Sbjct: 144 QSYLDA 149

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 48.8 bits (115), Expect = 7e-07
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564
           +QA+K LQ +LK+Y  A      +A I+A M
Sbjct: 19  KQALKKLQASLKLY--ADDSAPALA-IKATM 46

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
           + G+    L N +++  +F+           +K      A   +GL   +      A+  
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
              AR +         P  + V++ LA ++      + A+  L 
Sbjct: 74  LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 17/110 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
                  L    EA    E   +        E   A       LG T A   +   +++ 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQK-----EPEREEA----WRSLGLTQAENEKDGLAIIA 73

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
                 +        DP+       LA +H      + A    +  L   
Sbjct: 74  LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 17/109 (15%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
            G + L L+   EA  A++           +  P     +  L        K   +    
Sbjct: 23  EGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
            +A  +   P       +  +    ++  + + +    A+  L+  L  
Sbjct: 75  NHARML--DP-------KDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           ++   + A  +  +G+       +++A   Y KA+        E  P+  + +   A +Y
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI--------ELDPSNITFYNNKAAVY 52

Query: 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544
               K  E   +CE A+ +          + IA  ++   + ++  N+L  A++   ++L
Sbjct: 53  FEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 545 KIYNDA 550
             + D 
Sbjct: 111 SEFRDP 116

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 17/130 (13%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +A      G Y +A  V +    +         +       + LG     +GQ + +
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRF----FLGLGACRQAMGQYDLA 74

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           +  Y+ G  +        D        + AE  +Q  + +EA+    +A ++  +     
Sbjct: 75  IHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126

Query: 388 SLEEAADRRL 397
            L       L
Sbjct: 127 ELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 22/139 (15%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
                     M  +I     S  +LE+      +       G +E A        +    
Sbjct: 2   PLGSGGGTIAMLNEI-----SSDTLEQLYS---LAFNQYQSGXYEDAHXVFQALCV---L 50

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           +  D+        +G    ++ +YD A  +Y                         A+  
Sbjct: 51  DHYDSRFF---LGLGACRQAMGQYDLAIHSYSYGA--------VMDIXEPRFPFHAAECL 99

Query: 485 NRTGKLRESKSYCENALRI 503
            + G+L E++S    A  +
Sbjct: 100 LQXGELAEAESGLFLAQEL 118

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661
               +    ++  + + A+ LFEE             PD +G Y +L   Y+ + R DDA
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDA 60

Query: 662 IEILE 666
           I+   
Sbjct: 61  IDTYA 65

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           +A  +      + A+ + E+ +E  P      ++       +  LG  Y  L + ++++ 
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDP------DYVGT----YYHLGKLYERLDRTDDAID 62

Query: 330 CYTTGLEVQKQ 340
            Y  G+EV ++
Sbjct: 63  TYAQGIEVARE 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 61/382 (15%), Positives = 106/382 (27%), Gaps = 125/382 (32%)

Query: 427 QDAEVASVDCS-IGD---TYLSLSRYDE---AGFAYQKALTAFKT--NKGENHPAVASVF 477
           +DA V + DC  + D   + LS    D    +  A    L  F T  +K E    +   F
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE---MVQKF 82

Query: 478 VR--LADMYN------RT---GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526
           V   L   Y       +T        ++ Y E   R+Y                 +VS +
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKY-------NVSRL 134

Query: 527 YESMNELEQAIKLLQ--------------K---ALKIYNDAP--------------GQQS 555
            +   +L QA+  L+              K   AL +                      +
Sbjct: 135 -QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 556 TVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFF-------------GV 601
           +   +   +  + Y +  N++   D   N   ++ +I                      V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 602 ----ALNQMGLAC----VQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
               A N   L+C      R+  + + +         L+       PD            
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------------ 301

Query: 653 DAIGRLDDAIEILEFVVGIREEKL----GTANPDVDDEKRRL---AELLKEAGRVRSRKA 705
                  +   +L   +  R + L     T NP      RRL   AE +++     +   
Sbjct: 302 -------EVKSLLLKYLDCRPQDLPREVLTTNP------RRLSIIAESIRDG---LATWD 345

Query: 706 QSLETLLDANSRVNNDGIELCY 727
                  D  + +    IE   
Sbjct: 346 NWKHVNCDKLTTI----IESSL 363

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 24/133 (18%)

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
                 LE  +       G ++ L        LG TYA   Q + +L      L+     
Sbjct: 2   QAITERLEAMLAQ-----GTDNMLL----RFTLGKTYAEHEQFDAALPHLRAALDF---- 48

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
               DP      ++L +        + A++  +  L   +  G    ++E      +  +
Sbjct: 49  ----DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE------LQ-V 97

Query: 402 CETKGDHEAALEH 414
              +   E ALEH
Sbjct: 98  FLRRLAREDALEH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 19/125 (15%)

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
              +L A+  + +    +    +G    +    + A+     A            P    
Sbjct: 4   ITERLEAMLAQGTDNM-LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSV 54

Query: 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE--KRRLAELLKEAGRVR 701
            +  L  T    G    A +  E  +               D+   + L   L+   R  
Sbjct: 55  AWKWLGKTLQGQGDRAGARQAWESGLAA--------AQSRGDQQVVKELQVFLRRLARED 106

Query: 702 SRKAQ 706
           + +  
Sbjct: 107 ALEHH 111

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G+       +D A   Y KA         E  P   +     A +Y   G   + +  CE
Sbjct: 11  GNDAYKKKDFDTALKHYDKAK--------ELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            A+ +  +        +IA     + + Y    + + AI    K+L  +  
Sbjct: 63  KAIEVGRENREDYR--QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623
           +G  YY  G+Y ++ + ++ A+     +          A   +G A  ++   +EA+E +
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALE----L---DPNNA-EAWYNLGNAYYKQGDYDEAIEYY 66

Query: 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
           ++A  +         P+    + NL   Y   G  D+AIE
Sbjct: 67  QKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIE 98

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 9e-04
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 29/134 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y    + ++AI+  QKAL++  N+A          EA   +G  YY  G+Y ++ + ++
Sbjct: 18  AYYKQGDYDEAIEYYQKALELDPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A+     +          A   +G A  ++   +EA+E +++A  +         P+  
Sbjct: 68  KALE----L---DPNNAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNA 111

Query: 643 GVYSNLAGTYDAIG 656
               NL       G
Sbjct: 112 EAKQNLGNAKQKQG 125

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVALNQMGLACVQRYSI 616
             GV+ Y  GNY++S D F+ AI       +            G AL  +      RY  
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAI-------QLDPEESKYWLMKGKALYNLE-----RY-- 56

Query: 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
            EAV+ +      +      Y+ D   V++  A     I   +   E
Sbjct: 57  EEAVDCYNYV---INVIEDEYNKD---VWAAKADALRYIEGKEVEAE 97

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 23/109 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFK 582
           +        ++I L +KA+++   ++          +     G   Y L  Y ++ D + 
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEES----------KYWLMKGKALYNLERYEEAVDCYN 64

Query: 583 NAISKLRAIGERKSAFF--GVALNQMGLACVQRYSINEAVELFEEARSI 629
             I+ +      K  +     AL  +              E+ E    +
Sbjct: 65  YVIN-VIEDEYNKDVWAAKADALRYIE-----GK--EVEAEIAEARAKL 105

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 44.9 bits (105), Expect = 8e-05
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           +L  A +   +    ++AL    R  + + I           + +  +  +    G + +
Sbjct: 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRI-FFPGSHPVRGVQVMKVGKLQLHQGMFPQ 389

Query: 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
           A+  L  + +I  +  G+EH+L +        D   +L + + ++
Sbjct: 390 AMKNLRLAFDIMRVTHGREHSLIE--------DLILLLEECDANI 426

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 20/192 (10%), Positives = 53/192 (27%), Gaps = 25/192 (13%)

Query: 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411
            C         A   +  ++  +   +  K      +  +      M     +       
Sbjct: 263 DCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP 322

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
             ++    +   A               D  ++L   +EA F   + +  ++     +HP
Sbjct: 323 DINIYQLKVLDCA--------------MDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
                 +++  +    G   ++      A  I            +  G  + S I + + 
Sbjct: 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM----------RVTHG-REHSLIEDLIL 417

Query: 532 ELEQAIKLLQKA 543
            LE+    ++ +
Sbjct: 418 LLEECDANIRAS 429

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 1/115 (0%)

Query: 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAG-IEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            S     + +KL ++ L+         +     + +    +   L  Y ++    +  + 
Sbjct: 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
               +    +A  G+A+ + GL       I     +  +A +IL    GP HP T
Sbjct: 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 2/106 (1%)

Query: 402 CETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
             ++G +   ++     L     +  D +  V  +     +    L  Y+EA    ++ +
Sbjct: 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
             +      N+  +    +R        G +         A  I  
Sbjct: 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 10/115 (8%), Positives = 36/115 (31%), Gaps = 1/115 (0%)

Query: 528 ESMNELEQAIKLLQKALKIYNDA-PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           +      + +++ + + +  +         +  +  Q   +   + ++  +    +  I 
Sbjct: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
                    S        ++G   +   +     +  ++A +I+E   G  HP  
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 23/182 (12%), Positives = 53/182 (29%), Gaps = 12/182 (6%)

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY--AMLGQLENSLMCYTTGLEVQK 339
           N+ +  L +++  P  +  QE           L   +  A    L           E+  
Sbjct: 164 NDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLG 223

Query: 340 QVLGETDPRVGETCRYLAEAHV--QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397
           +++ ++ P         A   +   +    + ++   +  +I      P     +   ++
Sbjct: 224 EIV-QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQI 282

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
             +    KG  + + + +       I  +           +G  Y       EA  AY  
Sbjct: 283 KAVSALVKGKTDESYQAINTG----IDLEMSWLNYV---LLGKVYEMKGMNREAADAYLT 335

Query: 458 AL 459
           A 
Sbjct: 336 AF 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	729
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.89
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.86
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.8
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.76
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.73
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.7
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.68
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.66
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.64
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.64
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.63
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.6
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.57
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.56
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.53
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.51
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.49
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.49
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.49
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.47
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.47
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.46
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.46
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.46
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.42
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.41
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.37
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.36
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.36
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.35
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.35
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.35
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.33
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.31
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.3
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.3
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.28
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.27
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.27
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.24
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.24
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.2
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.18
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.14
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.14
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.11
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.11
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.11
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.1
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.09
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.02
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.02
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.01
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.95
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.87
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.85
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.83
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.83
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.7
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.66
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.62
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.56
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.56
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.56
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.55
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.4
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.32
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.26
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.18
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.17
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.14
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.14
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.1
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.04
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.02
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.0
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.99
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.98
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.84
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.72
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.62
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.48
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.15
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.9
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.95
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.64
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.6
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.57
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.55
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.52
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.3
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.21
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	95.19
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.11
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.99
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.92
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.76
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.55
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.4
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.21
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.03
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.9
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.24
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.33
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.03
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.18
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.86
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.97
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.32
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	88.12
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	87.54
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.48
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	87.03
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	85.63
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.81
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	84.51
2o8p_A	227	14-3-3 domain containing protein; signaling protei	84.41
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	83.97
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	83.19
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	83.16
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	82.92
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	82.83
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	82.61
2o8p_A	227	14-3-3 domain containing protein; signaling protei	82.52
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	81.98
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	81.27
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.62
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	80.3

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=4.8e-37  Score=325.25  Aligned_cols=385  Identities=19%  Similarity=0.210  Sum_probs=345.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchH
Q 004811          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL  305 (729)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  305 (729)
                      .+|..++..|+ +++|+..+.++++..         |+...++..+|.++...|++++|+.++++++...     +..  
T Consensus         4 ~~a~~~~~~g~-~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~--   66 (388)
T 1w3b_A            4 ELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL--   66 (388)
T ss_dssp             THHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred             hHHHHHHHCCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc--
Confidence            56888999997 999999999998762         4456778899999999999999999999999875     333  


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                        ..++..+|.++...|++++|+..|++++.+        +|....++..+|.++...|++++|+..|++++...|... 
T Consensus        67 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-  135 (388)
T 1w3b_A           67 --AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-  135 (388)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-
T ss_pred             --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Confidence              345999999999999999999999999998        788899999999999999999999999999999876543 


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (729)
Q Consensus       386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (729)
                             .++..+|.++...|++++|+..|++++..      .|....++..+|.++...|++++|+.+|++++.+    
T Consensus       136 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  198 (388)
T 1w3b_A          136 -------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----  198 (388)
T ss_dssp             -------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred             -------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence                   56889999999999999999999999864      4556778999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (729)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (729)
                          .|....++..+|.++...|++++|+..|++++.+         .|....++..+|.++...|++++|+..|+++++
T Consensus       199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  265 (388)
T 1w3b_A          199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE  265 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                7888899999999999999999999999999998         344467899999999999999999999999998


Q ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (729)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  625 (729)
                      +.+..       ..++..+|.++...|++++|+.+|++++++.        +....++..+|.++...|++++|+.+|++
T Consensus       266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            75543       4678999999999999999999999999872        12357889999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                      ++++        +|+...++..+|.+|...|++++|+.+|++++++        +|....+++++|.++...|+
T Consensus       331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence            9987        7888899999999999999999999999999975        68889999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.2e-36  Score=322.21  Aligned_cols=378  Identities=18%  Similarity=0.249  Sum_probs=339.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (729)
                      .+|..++..|++++|+..|.++++..     ++++    .++..+|.++...|++++|+.++++++..        +|..
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~   66 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL   66 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence            36888999999999999999998875     4433    34888999999999999999999999988        7889


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      ..++..+|.++...|++++|+..|++++.+.|..        ..++..+|.++...|++++|+..|++++..      .|
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p  132 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP  132 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence            9999999999999999999999999999986554        356999999999999999999999999864      45


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ....++..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+      
T Consensus       133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------  198 (388)
T 1w3b_A          133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------  198 (388)
T ss_dssp             TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            55678889999999999999999999999998        7888999999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                         .|....++..+|.++...|++++|+..|++++.+.+..       ..++..+|.++...|++++|+.+|++++++. 
T Consensus       199 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-  267 (388)
T 1w3b_A          199 ---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-  267 (388)
T ss_dssp             ---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence               34457789999999999999999999999999986654       5788899999999999999999999998851 


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                             +....++..+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++
T Consensus       268 -------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  332 (388)
T 1w3b_A          268 -------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             -------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   223568999999999999999999999999998        78888899999999999999999999999998


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccccc
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIELCY  727 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~~y  727 (729)
                      ++        +|+...++..+|.++...|++++|+ ..|+++++++|+  ..+..++.+|
T Consensus       333 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~~~~a~~~lg~~~  383 (388)
T 1w3b_A          333 EV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             TS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             hc--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHhHHHHH
Confidence            65        6888899999999999999999999 999999999998  5555555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-35  Score=331.70  Aligned_cols=461  Identities=12%  Similarity=0.087  Sum_probs=372.6

Q ss_pred             cccCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004811          190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (729)
Q Consensus       190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  269 (729)
                      +...+..+...+++..++..+.......|+. ..++.++..+...|+ +++|+..|++++..          +....++.
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~----------~~~~~~~~  154 (597)
T 2xpi_A           87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY----------NRSSACRY  154 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG----------GTCHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc----------ccchhHHH
Confidence            3344445566677777775555555555654 567889999999997 99999998887642          22356788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHhcccchhh-------ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 004811          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIE-------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL  342 (729)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  342 (729)
                      .++.+|...|++++|+..|++........       ...........+|+.+|.+|...|++++|+.+|+++++.     
T Consensus       155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----  229 (597)
T 2xpi_A          155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-----  229 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            99999999999999999998643221000       000000124567999999999999999999999999987     


Q ss_pred             CCCCchHHHHHHHH--------------------------------------HHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004811          343 GETDPRVGETCRYL--------------------------------------AEAHVQALQFSEAQKFCQMALDIHKDNG  384 (729)
Q Consensus       343 ~~~~~~~~~~~~~l--------------------------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (729)
                         +|....++..+                                      +..|...|++++|+.+|+++++. +.. 
T Consensus       230 ---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~-  304 (597)
T 2xpi_A          230 ---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS-  304 (597)
T ss_dssp             ---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC-
T ss_pred             ---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch-
Confidence               45555555544                                      33445678899999999988776 211 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT  464 (729)
Q Consensus       385 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  464 (729)
                             ..++..++.++...|++++|+.+|++++...      +....++..++.++...|++++|+..+++++..   
T Consensus       305 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  368 (597)
T 2xpi_A          305 -------SDLLLCKADTLFVRSRFIDVLAITTKILEID------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR---  368 (597)
T ss_dssp             -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred             -------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---
Confidence                   4679999999999999999999999987542      223456788999999999999999999999976   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                           .|....++..+|.+|...|++++|+.+|++++++         .+....++..++.+|...|++++|+.+|++++
T Consensus       369 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  434 (597)
T 2xpi_A          369 -----HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA  434 (597)
T ss_dssp             -----CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 6778899999999999999999999999999998         33346789999999999999999999999999


Q ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE  624 (729)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  624 (729)
                      ...+..       ..++..+|.+|...|++++|+.+|++++++.    ..    ...++..+|.+|...|++++|+.+|+
T Consensus       435 ~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~  499 (597)
T 2xpi_A          435 RLFQGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYALF----QY----DPLLLNELGVVAFNKSDMQTAINHFQ  499 (597)
T ss_dssp             HTTTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CC----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhCccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC----ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            876543       3678899999999999999999999998762    11    34679999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004811          625 EARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR  703 (729)
Q Consensus       625 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A  703 (729)
                      ++++.......  +|+. ..++..+|.+|...|++++|+.+|++++++        .|....++..|+.+|...|++++|
T Consensus       500 ~~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          500 NALLLVKKTQS--NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             HHHHHHHHSCC--CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhhhcccc--chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHH
Confidence            99998655322  4553 779999999999999999999999999987        477788999999999999999999


Q ss_pred             HHHHHHHHHhhccc--cCCCccccccc
Q 004811          704 KAQSLETLLDANSR--VNNDGIELCYG  728 (729)
Q Consensus       704 ~~~~l~~al~~~p~--~~~~~l~~~yg  728 (729)
                      . ..|+++++++|+  ..+..++.+|.
T Consensus       570 ~-~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          570 I-THLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             H-HHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             H-HHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9 999999999998  66667777664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.7e-33  Score=313.26  Aligned_cols=438  Identities=12%  Similarity=0.039  Sum_probs=353.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      .....|..++..+...|+ +++|+.+|++++...       |++   ..+..+|.+|...|++++|+..|++++...   
T Consensus        82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~-------p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  147 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDIT-------GNP---NDAFWLAQVYCCTGDYARAKCLLTKEDLYN---  147 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-------CCH---HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---
T ss_pred             HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhC-------CCc---hHHHHHHHHHHHcCcHHHHHHHHHHHhccc---
Confidence            467788999999999997 999999999998653       222   456789999999999999999999997652   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ--------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQ  370 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  370 (729)
                         .+    ..++..++.+|...|++++|+..|++.....        ........+....++..+|.+|...|++++|+
T Consensus       148 ---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  220 (597)
T 2xpi_A          148 ---RS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK  220 (597)
T ss_dssp             ---TC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---cc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence               22    2358999999999999999999998532110        00000011446889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC------------------------------CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          371 KFCQMALDIHKDNGSPA------------------------------SLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       371 ~~~~~al~~~~~~~~~~------------------------------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                      .+|+++++..+......                              .......+..++..|...|++++|+..|++++.
T Consensus       221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  300 (597)
T 2xpi_A          221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING  300 (597)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence            99999998765432100                              000001122224455677888999998887653


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (729)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (729)
                      .       +....++..++.+|...|++++|+.+|++++..        .|....++..++.++...|++++|+..++++
T Consensus       301 ~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
T 2xpi_A          301 L-------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDL  365 (597)
T ss_dssp             G-------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             C-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            2       345678899999999999999999999999987        5667788999999999999999999999999


Q ss_pred             HHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (729)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (729)
                      +..         .+....++..+|.+|...|++++|+.+|++++++.+..       ..++..++.+|...|++++|+.+
T Consensus       366 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~  429 (597)
T 2xpi_A          366 VDR---------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-------GPAWIGFAHSFAIEGEHDQAISA  429 (597)
T ss_dssp             HHH---------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             Hhh---------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence            977         33346788999999999999999999999999875543       46888999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004811          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (729)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (729)
                      |++++...+        ....++..+|.+|...|++++|+.+|+++++.        .|....++..+|.+|...|++++
T Consensus       430 ~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~  493 (597)
T 2xpi_A          430 YTTAARLFQ--------GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQT  493 (597)
T ss_dssp             HHHHHHTTT--------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCc--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence            999987521        12468889999999999999999999999998        77777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChhH-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccccc
Q 004811          661 AIEILEFVVGIREEKLGTANPDV-DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIELCY  727 (729)
Q Consensus       661 A~~~~~~al~~~~~~~g~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~~y  727 (729)
                      |+.+|++++++....  +.+|.. ..++..++.+|...|++++|. ..|+++++++|+  ..+..++.+|
T Consensus       494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~~  560 (597)
T 2xpi_A          494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAI-DALNQGLLLSTNDANVHTAIALVY  560 (597)
T ss_dssp             HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCChHHHHHHHHHH
Confidence            999999999876432  234554 789999999999999999999 999999999997  5555555544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=292.78  Aligned_cols=402  Identities=12%  Similarity=0.091  Sum_probs=336.5

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhc
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (729)
                      .+..++.+|..++..|+ |++|+.+|++++...       |+   ..++..+|.+|...|++++|+..|++++++.    
T Consensus         5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-------p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----   69 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKK-YDDAIKYYNWALELK-------ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK----   69 (514)
T ss_dssp             HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcC-------cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence            56789999999999997 999999999999873       22   6679999999999999999999999999875    


Q ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------h--------------
Q 004811          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-----------------------L--------------  342 (729)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~--------------  342 (729)
                       +...    .+++.+|.++..+|++++|+..|++++...+..                       +              
T Consensus        70 -p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  144 (514)
T 2gw1_A           70 -PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS  144 (514)
T ss_dssp             -SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred             -hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence             3333    358999999999999999999999987652100                       0              


Q ss_pred             ------------------------C----------CCCchHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcC-
Q 004811          343 ------------------------G----------ETDPRVGETCRYLAEAHVQ---ALQFSEAQKFCQMALDIHKDNG-  384 (729)
Q Consensus       343 ------------------------~----------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~-  384 (729)
                                              +          -..|....++..+|.++..   .|++++|+.+|++++...+... 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  224 (514)
T 2gw1_A          145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD  224 (514)
T ss_dssp             ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence                                    0          0002337778888888876   8999999999999999543322 


Q ss_pred             -CCCC----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          385 -SPAS----LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL  459 (729)
Q Consensus       385 -~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  459 (729)
                       .+..    +..+.++..+|.++...|++++|+.+|++++..      .+. ..++..+|.++...|++++|+.++++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence             1111    455778999999999999999999999999864      233 7889999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004811          460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (729)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (729)
                      ..        .|....++..+|.++...|++++|+.+|++++.+..         ....++..+|.++...|++++|+.+
T Consensus       298 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~  360 (514)
T 2gw1_A          298 KL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP---------ENIFPYIQLACLAYRENKFDDCETL  360 (514)
T ss_dssp             TT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS---------SCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             hc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            87        677778999999999999999999999999998732         2345789999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH---cCCH
Q 004811          540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ---RYSI  616 (729)
Q Consensus       540 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~  616 (729)
                      +++++...+..       ..++..+|.++...|++++|+.+|++++.+.+......  ....++..+|.++..   .|++
T Consensus       361 ~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~  431 (514)
T 2gw1_A          361 FSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENF  431 (514)
T ss_dssp             HHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHH
T ss_pred             HHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCH
Confidence            99999886654       36788999999999999999999999998765432211  113488999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 004811          617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      ++|+.+|++++..        +|....++..+|.+|...|++++|+.+|++++++        +|....++..+
T Consensus       432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~  489 (514)
T 2gw1_A          432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHH
Confidence            9999999999998        7888889999999999999999999999999987        46666665554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=5.1e-32  Score=299.75  Aligned_cols=421  Identities=14%  Similarity=0.146  Sum_probs=327.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhh
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (729)
                      ..+..++.+|..++..|+ +++|+.+|++++...         |..+.++..+|.+|..+|++++|+..|++++.+.   
T Consensus        23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   89 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---   89 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            467899999999999997 999999999999873         4457789999999999999999999999999885   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004811          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (729)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (729)
                        +.++    .+++.+|.++...|++++|+..|+ ++...        |.....+   ...+...+...+|+..+++++.
T Consensus        90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--------~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~  151 (537)
T 3fp2_A           90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLN--------GDFDGAS---IEPMLERNLNKQAMKVLNENLS  151 (537)
T ss_dssp             --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred             --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--------CCCChHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence              3333    358999999999999999999995 66552        3332222   2234445556788888888876


Q ss_pred             HHHhcCCCCCHHH-----------------------------HHHHHHH--------HHHHHHhCCHHHHHHHHHHHHHH
Q 004811          379 IHKDNGSPASLEE-----------------------------AADRRLM--------GLICETKGDHEAALEHLVLASMT  421 (729)
Q Consensus       379 ~~~~~~~~~~~~~-----------------------------a~~~~~l--------g~~~~~~g~~~~A~~~~~~al~~  421 (729)
                      ..+.......+..                             ......+        +......|++++|+..|++++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~  231 (537)
T 3fp2_A          152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA  231 (537)
T ss_dssp             -------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5433222111100                             0112222        22333445778888888777643


Q ss_pred             HHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          422 MIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (729)
Q Consensus       422 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (729)
                      .   +..+    ..+.++..+|.++...|++++|+.+|++++..        .|. ..++..+|.++...|++++|+.+|
T Consensus       232 ~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~  299 (537)
T 3fp2_A          232 N---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFF  299 (537)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred             C---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence            2   2222    23667899999999999999999999999998        566 789999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004811          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (729)
                      ++++..         .+....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|++++|
T Consensus       300 ~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          300 QKAVDL---------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcc---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence            999998         33346789999999999999999999999999987654       36788999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--
Q 004811          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI--  655 (729)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--  655 (729)
                      +.+|++++...+        ....++..+|.++...|++++|+.+|++++........  .......+..+|.++...  
T Consensus       364 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~  433 (537)
T 3fp2_A          364 EAFFNETKLKFP--------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSS  433 (537)
T ss_dssp             HHHHHHHHHHCT--------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhh
Confidence            999999998621        13468889999999999999999999999998644322  122333567889999999  


Q ss_pred             --------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          656 --------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       656 --------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                              |++++|+.+|++++++        +|....++..+|.+|...|++++|+ ..|+++++++|+
T Consensus       434 ~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~  494 (537)
T 3fp2_A          434 QDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILART  494 (537)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--
T ss_pred             ccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence                    9999999999999987        5778899999999999999999999 999999999987

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-32  Score=298.54  Aligned_cols=392  Identities=16%  Similarity=0.122  Sum_probs=332.4

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (729)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (729)
                      .+..+..+|.+++..|+|++|+..|++++...     ++     ..++..+|.++...|++++|+..|+++++.      
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------   68 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-----PVFYSNLSACYVSVGDLKKVVEMSTKALEL------   68 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------
Confidence            46778999999999999999999999999875     22     335899999999999999999999999998      


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-------------------------------------
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-------------------------------------  386 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------------  386 (729)
                        +|....++..+|.++...|++++|+..|++++...+.....                                     
T Consensus        69 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  146 (514)
T 2gw1_A           69 --KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ  146 (514)
T ss_dssp             --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred             --ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence              78889999999999999999999999999998765411000                                     


Q ss_pred             ----------------------------------CCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH----hC
Q 004811          387 ----------------------------------ASLEEAADRRLMGLICET---KGDHEAALEHLVLASMTMI----AN  425 (729)
Q Consensus       387 ----------------------------------~~~~~a~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~----~~  425 (729)
                                                        ..+.....+..+|.++..   .|++++|+.+|++++....    ..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  226 (514)
T 2gw1_A          147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN  226 (514)
T ss_dssp             ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence                                              001125567778888776   8999999999999987431    11


Q ss_pred             CC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          426 DQ----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (729)
Q Consensus       426 ~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (729)
                      +.    .+....++..+|.++...|++++|+.+|++++..        .|. ..++..+|.++...|++++|+.+|++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            22    2677889999999999999999999999999998        566 8999999999999999999999999999


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (729)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (729)
                      ...         +....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|++++|+.+|
T Consensus       298 ~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~  361 (514)
T 2gw1_A          298 KLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETLF  361 (514)
T ss_dssp             TTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             hcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            872         2335678999999999999999999999999876543       357889999999999999999999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCCh
Q 004811          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---IGRL  658 (729)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~  658 (729)
                      ++++...+        ....++..+|.++...|++++|+.+|++++........  ......++..+|.++..   .|++
T Consensus       362 ~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~  431 (514)
T 2gw1_A          362 SEAKRKFP--------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--IYVGIAPLVGKATLLTRNPTVENF  431 (514)
T ss_dssp             HHHHHHST--------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS--CSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred             HHHHHHcc--------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHhhhhhcCCH
Confidence            99987621        12468899999999999999999999999998322100  11113489999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          659 DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       659 ~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++|+.+|++++.+        +|....++..+|.++...|++++|. ..|+++++++|+
T Consensus       432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~  481 (514)
T 2gw1_A          432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLART  481 (514)
T ss_dssp             HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhccc
Confidence            9999999999987        5777889999999999999999999 999999999997

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-30  Score=283.24  Aligned_cols=407  Identities=14%  Similarity=0.069  Sum_probs=294.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004811          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (729)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (729)
                      .+.++..+++.+.....   ..++...+.++..||.++..+|++++|+++|++|+++.+...+.......+.++.++|.+
T Consensus        27 ~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~  103 (472)
T 4g1t_A           27 GENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV  103 (472)
T ss_dssp             TCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence            44555666655544322   223344567889999999999999999999999999865443333222345568999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004811          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADR  395 (729)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  395 (729)
                      |..+|++++|+.+|++++.+.+...+..++..+.++..+|.++...|  +|++|+.+|++++++.|...        .++
T Consensus       104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~--------~~~  175 (472)
T 4g1t_A          104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP--------EFT  175 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--------HHH
T ss_pred             HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--------HHH
Confidence            99999999999999999999998877767778888999988877654  79999999999999976542        456


Q ss_pred             HHHHHHHH---HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          396 RLMGLICE---TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGE  468 (729)
Q Consensus       396 ~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~  468 (729)
                      ..++.++.   ..+++++|++.|++++.+      .|....++..+|..+.    ..|++++|+.++++++.+       
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-------  242 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-------  242 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------
Confidence            66666644   457888999999999865      3334455666665554    456788999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc------------------
Q 004811          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM------------------  530 (729)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------  530 (729)
                       .|....++..+|.+|...|++++|+..|+++++.         .|....++..+|.+|...                  
T Consensus       243 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~  312 (472)
T 4g1t_A          243 -APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL  312 (472)
T ss_dssp             -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred             -CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             7888899999999999999999999999999998         445577888899887653                  


Q ss_pred             -chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 004811          531 -NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (729)
Q Consensus       531 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  609 (729)
                       +.+++|+.++++++.+.+..       ..++..+|.+|...|++++|+.+|++++.+     ...+.....++..+|.+
T Consensus       313 ~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~  380 (472)
T 4g1t_A          313 LELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNF  380 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHH
Confidence             34667788888887776554       245678999999999999999999999875     12222233455666654


Q ss_pred             -HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 004811          610 -CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR  688 (729)
Q Consensus       610 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~  688 (729)
                       +...|++++|+.+|++++++        .|.......          ....+..++++++..        +|..+.++.
T Consensus       381 ~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~----------~~~~l~~~~~~~l~~--------~p~~~~~~~  434 (472)
T 4g1t_A          381 QLYQMKCEDKAIHHFIEGVKI--------NQKSREKEK----------MKDKLQKIAKMRLSK--------NGADSEALH  434 (472)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHH----------HHHHHHHHHHHHHHH--------CC-CTTHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhc--------CcccHHHHH----------HHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence             45789999999999999998        555432211          123344556666654        688888999


Q ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          689 RLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .||.+|...|++++|+ ++|+++|++.|.
T Consensus       435 ~LG~~~~~~g~~~~A~-~~y~kALe~~~~  462 (472)
T 4g1t_A          435 VLAFLQELNEKMQQAD-EDSERGLESGSL  462 (472)
T ss_dssp             HHHHHHHHHHHCC----------------
T ss_pred             HHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence            9999999999999999 999999999887

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=1.2e-29  Score=274.08  Aligned_cols=400  Identities=14%  Similarity=0.116  Sum_probs=297.6

Q ss_pred             ccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004811          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL  288 (729)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  288 (729)
                      .+.+....+|..+..++.+|..++..|+ +++|+.+|++++...         |....++..+|.+|...|++++|+.+|
T Consensus        14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~   83 (450)
T 2y4t_A           14 GTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDL   83 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5566677889999999999999999997 999999999998762         334778899999999999999999999


Q ss_pred             HHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH---HHHHHHHHHHHHhcC
Q 004811          289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG---ETCRYLAEAHVQALQ  365 (729)
Q Consensus       289 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~  365 (729)
                      ++++++.     +..    ..++..+|.+|...|++++|+.+|++++..        .|...   .++..++.++.    
T Consensus        84 ~~al~~~-----p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~----  142 (450)
T 2y4t_A           84 TKVIQLK-----MDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDE----  142 (450)
T ss_dssp             HHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHH----
T ss_pred             HHHHhcC-----CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHH----
Confidence            9999875     333    345889999999999999999999999887        56665   66666655421    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004811          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (729)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (729)
                                                ...+..+|.++...|++++|+.+|++++..      .|....++..+|.+|...
T Consensus       143 --------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~  190 (450)
T 2y4t_A          143 --------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKE  190 (450)
T ss_dssp             --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred             --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHC
Confidence                                      122455677777788888888888877653      333456777888888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH------
Q 004811          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG------  519 (729)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------  519 (729)
                      |++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+..      +.......      
T Consensus       191 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          191 GEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKK  256 (450)
T ss_dssp             TCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHH
Confidence            8888888888888877        466677888888888888888888888888887722      12222111      


Q ss_pred             ---HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004811          520 ---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (729)
Q Consensus       520 ---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (729)
                         +..+|.++...|++++|+.+|++++.+.+..   ......++..+|.++...|++++|+.++++++.+.        
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------  325 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSI---AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------  325 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence               2445999999999999999999999875432   22335678899999999999999999999999862        


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH------------HHHcC-----ChH
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT------------YDAIG-----RLD  659 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g-----~~~  659 (729)
                      +....++..+|.++...|++++|+.+|++++++        +|+...++..++.+            |..+|     +.+
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~  397 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ  397 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence            223578999999999999999999999999998        78888888888844            55555     567


Q ss_pred             HHHHHHHH-HHHHHHHHcCCCC--hhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          660 DAIEILEF-VVGIREEKLGTAN--PDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       660 ~A~~~~~~-al~~~~~~~g~~~--p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                      ++...|++ ++...........  ......+..++.+|..+|+.+++.
T Consensus       398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            77888886 4443111100000  113446777888888888877764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=5.1e-29  Score=269.12  Aligned_cols=344  Identities=15%  Similarity=0.151  Sum_probs=293.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (729)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (729)
                      ....++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+|+++++..+..   
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---   93 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---   93 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Confidence            4556999999999999999999999999988        68889999999999999999999999999999987554   


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHH---HH------------HHHHHHHHHHcCCHHHH
Q 004811          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA---SV------------DCSIGDTYLSLSRYDEA  451 (729)
Q Consensus       387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A  451 (729)
                           ..++..+|.++...|++++|+.+|++++..      .|...   .+            +..+|.++...|++++|
T Consensus        94 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A           94 -----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                 467999999999999999999999988742      22222   33            34557889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc
Q 004811          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (729)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (729)
                      +.+|++++..        .|....++..+|.+|...|++++|+.+|++++...         +....++..+|.+|...|
T Consensus       163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------NDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------CSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcC
Confidence            9999999988        67788999999999999999999999999999983         334678999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCcHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004811          532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIE------------AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (729)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (729)
                      ++++|+.+|++++.+.+..       ...+            ..+|.++...|++++|+.+|++++.+.    +..+...
T Consensus       226 ~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~  294 (450)
T 2y4t_A          226 DHELSLSEVRECLKLDQDH-------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYT  294 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHHH
Confidence            9999999999999875543       1222            344999999999999999999999852    2233334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      ..++..+|.++...|++++|+.++++++.+        +|....++..+|.+|...|++++|+.+|++++++        
T Consensus       295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------  358 (450)
T 2y4t_A          295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------  358 (450)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            568999999999999999999999999998        8888899999999999999999999999999976        


Q ss_pred             ChhHHHHHHHHHHH------------HHHhC-----CHhHHHHHHHHH-HHhhccc
Q 004811          680 NPDVDDEKRRLAEL------------LKEAG-----RVRSRKAQSLET-LLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~------------~~~~g-----~~~~A~~~~l~~-al~~~p~  717 (729)
                      +|+...++..++.+            |...|     +.+++. +.|++ ++..+|+
T Consensus       359 ~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd  413 (450)
T 2y4t_A          359 NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPD  413 (450)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGG
T ss_pred             CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCC
Confidence            57777888888854            44445     556777 77775 8889998

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=284.06  Aligned_cols=386  Identities=15%  Similarity=0.058  Sum_probs=287.4

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccc
Q 004811          216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (729)
Q Consensus       216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  295 (729)
                      .++..+..+..+|.++...|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.+|++++.+.
T Consensus        46 ~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           46 NREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             C---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            344556788899999999997 9999999999999998876655567788899999999999999999999999999987


Q ss_pred             hhhccccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---hcCHHHHH
Q 004811          296 VIEEGQEHALAKFAGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---ALQFSEAQ  370 (729)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~  370 (729)
                      +...++.++. ...++..+|.++...  ++|++|+.+|++++++        +|....++..++.++..   .+++++|+
T Consensus       125 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~al  195 (472)
T 4g1t_A          125 EKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNAI  195 (472)
T ss_dssp             HHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred             Hhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHHH
Confidence            6554443321 234577788777665  4799999999999999        78888888888887654   46778999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004811          371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS  446 (729)
Q Consensus       371 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  446 (729)
                      ..|++++++.|..        ..++..+|..+.    ..|++++|+.++++++..      .|....++..+|.+|...|
T Consensus       196 ~~~~~al~l~p~~--------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~  261 (472)
T 4g1t_A          196 DPLRQAIRLNPDN--------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKD  261 (472)
T ss_dssp             HHHHHHHHHCSSC--------HHHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCcc--------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcC
Confidence            9999999986554        244566665554    456788999999988764      4555678899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHhcC
Q 004811          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-------------------GKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~  507 (729)
                      ++++|+..|+++++.        +|....++..+|.+|...                   +.+++|+..|++++.+    
T Consensus       262 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----  329 (472)
T 4g1t_A          262 EPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA----  329 (472)
T ss_dssp             CHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             chHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc----
Confidence            999999999999998        788899999999988643                   3356778888888877    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~  586 (729)
                           .+....++..+|.++...|++++|+.+|++++.+.+..    .....++..+|.+ +...|++++|+.+|++++.
T Consensus       330 -----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          330 -----NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP----VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             -----CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             -----CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                 33445678899999999999999999999999763221    1223445566654 4578999999999999998


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      +.+     ...   .          ..+....+..++++++..        +|....++..||.+|..+|++++|+++|+
T Consensus       401 i~~-----~~~---~----------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~  454 (472)
T 4g1t_A          401 INQ-----KSR---E----------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADEDSE  454 (472)
T ss_dssp             SCC-----CCH---H----------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred             cCc-----ccH---H----------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            621     111   1          111234455667777777        88888899999999999999999999999


Q ss_pred             HHHHHH
Q 004811          667 FVVGIR  672 (729)
Q Consensus       667 ~al~~~  672 (729)
                      +|+++.
T Consensus       455 kALe~~  460 (472)
T 4g1t_A          455 RGLESG  460 (472)
T ss_dssp             ------
T ss_pred             HHHhcC
Confidence            999873

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=1e-29  Score=281.26  Aligned_cols=419  Identities=13%  Similarity=0.060  Sum_probs=327.7

Q ss_pred             ccccCcccccccccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHH
Q 004811          189 KSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL  268 (729)
Q Consensus       189 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~  268 (729)
                      .+...+..+...+++..|+..+..+...+|+...++..+|.+++..|+ +++|+..|++++.+.         |....++
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~   96 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK---------PDHSKAL   96 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CchHHHH
Confidence            345566677888899999988888888899999999999999999997 999999999999873         4457789


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC---
Q 004811          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET---  345 (729)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---  345 (729)
                      ..+|.++...|++++|+..|+ ++.+.     +.....       ....+...+...+|+..+++++..........   
T Consensus        97 ~~la~~~~~~g~~~~A~~~~~-~~~~~-----~~~~~~-------~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~  163 (537)
T 3fp2_A           97 LRRASANESLGNFTDAMFDLS-VLSLN-----GDFDGA-------SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS  163 (537)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-HHC-----------------------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHH-HHhcC-----CCCChH-------HHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence            999999999999999999996 76664     222111       11233344445677777777765422111111   


Q ss_pred             --------------------------CchHHHHHHHHH--------HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811          346 --------------------------DPRVGETCRYLA--------EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (729)
Q Consensus       346 --------------------------~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (729)
                                                ++........++        ......|++++|+..|+++++..+.... .....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~~  242 (537)
T 3fp2_A          164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LRENA  242 (537)
T ss_dssp             HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHH
T ss_pred             HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHHH
Confidence                                      111111222222        2333446888888888888877654321 11223


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (729)
                      +.++..+|.++...|++++|+.+|++++..      .|. ..++..+|.++...|++++|+.+|++++..        .|
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~  307 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NP  307 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CC
Confidence            567999999999999999999999999864      233 678899999999999999999999999998        67


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (729)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (729)
                      ....++..+|.++...|++++|+.+|++++.+.         +....++..+|.++...|++++|+.+|++++...+.. 
T Consensus       308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-  377 (537)
T 3fp2_A          308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-  377 (537)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence            888999999999999999999999999999983         2334678999999999999999999999999986654 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc----------CCHHHHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAVE  621 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~  621 (729)
                            ..++..+|.++...|++++|+.+|++++.+.+.......  ....+..+|.++...          |++++|+.
T Consensus       378 ------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~  449 (537)
T 3fp2_A          378 ------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIK  449 (537)
T ss_dssp             ------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence                  367889999999999999999999999998766544322  233467788999998          99999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      +|++++..        +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus       450 ~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          450 LLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            99999999        88888999999999999999999999999999883

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=5e-28  Score=252.46  Aligned_cols=333  Identities=15%  Similarity=0.152  Sum_probs=282.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (729)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (729)
                      +..++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+..|+++++..+..    
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----   70 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----   70 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence            346899999999999999999999999998        68888999999999999999999999999999986543    


Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHcCCHHHHH
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSI------------GDTYLSLSRYDEAG  452 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~  452 (729)
                          ..++..+|.++...|++++|+..|++++..      .|   ....++..+            |.++...|++++|+
T Consensus        71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ----chHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence                367999999999999999999999998743      34   444555544            79999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch
Q 004811          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (729)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (729)
                      .++++++..        .|....++..+|.++...|++++|+..+++++..         .|....++..+|.++...|+
T Consensus       141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL---------KSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC
Confidence            999999998        6778899999999999999999999999999987         23345789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004811          533 LEQAIKLLQKALKIYNDAPGQQSTV-----AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (729)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  607 (729)
                      +++|+.+|+++++..+.........     ......+|.++...|++++|+.+|++++...    +..+.....++..+|
T Consensus       204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence            9999999999998865441100000     0112355899999999999999999998863    223333446688899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 004811          608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK  687 (729)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~  687 (729)
                      .++...|++++|+.+|+++++.        +|....++..+|.+|...|++++|+.+|++++++        +|+...++
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~  343 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIR  343 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHH
Confidence            9999999999999999999998        7888889999999999999999999999999976        67777888


Q ss_pred             HHHHHHHHHhCC
Q 004811          688 RRLAELLKEAGR  699 (729)
Q Consensus       688 ~~La~~~~~~g~  699 (729)
                      ..|+.++...++
T Consensus       344 ~~l~~~~~~~~~  355 (359)
T 3ieg_A          344 EGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888776543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=4.3e-28  Score=257.79  Aligned_cols=344  Identities=15%  Similarity=0.148  Sum_probs=297.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004811          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (729)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (729)
                      +..++.+|.++...|++++|+.+|++++...     +.++ ....++..+|.++...|++++|+.++++++.+.+...  
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--   81 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--   81 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence            3458899999999999999999999999982     2222 2467899999999999999999999999999987765  


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------------------
Q 004811          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------------------  447 (729)
Q Consensus       387 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  447 (729)
                      .....+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+                   
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~  161 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD  161 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence            3456678899999999999999999999999999988888888889999999999999999                   


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 004811          448 -YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (729)
Q Consensus       448 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (729)
                       +++|+.++++++.+.....  +.+....++..+|.++...|++++|+.++++++.+....   .+......++..+|.+
T Consensus       162 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~  236 (406)
T 3sf4_A          162 ALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNA  236 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHH
Confidence             9999999999999988764  467788899999999999999999999999999998773   3466677899999999


Q ss_pred             HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004811          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (729)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (729)
                      +...|++++|+.++++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+.  ......++..+
T Consensus       237 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l  313 (406)
T 3sf4_A          237 YIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSL  313 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence            999999999999999999999886 555566788999999999999999999999999999887654  34457889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004811          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (729)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (729)
                      |.+|...|++++|+.+|++++++......  .+....++..+|.++...|+...+...+...
T Consensus       314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  373 (406)
T 3sf4_A          314 GNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIMSE  373 (406)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            99999999999999999999999887644  5677889999999999999875544444433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=1.1e-27  Score=254.73  Aligned_cols=342  Identities=15%  Similarity=0.160  Sum_probs=300.8

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      .....++..+|.++...|++++|+.+|++++++.+.    .....+.++..+|.++...|++++|+.++++++.+....+
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   81 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG   81 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence            345678899999999999999999999999998432    2233467899999999999999999999999999998888


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-----------------  489 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  489 (729)
                      +.+..+.++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.+|...|+                 
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            8889999999999999999999999999999999988764  346677899999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811          490 ---LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (729)
Q Consensus       490 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (729)
                         +++|+.++++++.+....   .+.+....++..+|.++...|++++|+.++++++.+.+.. +.....+.++..+|.
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~  235 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGN  235 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence               999999999999998874   3567788899999999999999999999999999999886 555566778999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (729)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (729)
                      +|...|++++|+.+|++++.+......  ......++..+|.++...|++++|+.+|++++.+......  .+....++.
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~  311 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACW  311 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhCcC--chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHH
Confidence            999999999999999999999887543  3445788999999999999999999999999999777543  456677999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                      .+|.+|..+|++++|+.+|++++++....  ...+....++..++.++...|+...+.
T Consensus       312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~  367 (406)
T 3sf4_A          312 SLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTN  367 (406)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence            99999999999999999999999998765  345677889999999999999885544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=2.2e-27  Score=247.58  Aligned_cols=336  Identities=11%  Similarity=0.057  Sum_probs=278.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      +..+..+|.+++..|++++|+..|++++...     +..+    .+++.+|.++...|++++|+..|++++..       
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL-------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            4568899999999999999999999999875     3333    35899999999999999999999999998       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hcCCCC----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK---DNGSPA----SLEEAADRRLMGLICETKGDHEAALEHLVL  417 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  417 (729)
                       .|....++..+|.++...|++++|+..|++++...+   ......    .......+..+|.++...|++++|+..+.+
T Consensus        67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  145 (359)
T 3ieg_A           67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK  145 (359)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence             688889999999999999999999999999998765   332100    000011123348999999999999999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (729)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (729)
                      ++..      .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..|
T Consensus       146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9864      3444578899999999999999999999999987        6778899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHH---------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Q 004811          498 ENALRIYEKPVPGVPPEEIAS---------GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY  568 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  568 (729)
                      +++++....      .+....         ....+|.++...|++++|+.++++++...+..   ......++..+|.++
T Consensus       212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~  282 (359)
T 3ieg_A          212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF  282 (359)
T ss_dssp             HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence            999998322      322222         23356899999999999999999999876442   223345677899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811          569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (729)
Q Consensus       569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  648 (729)
                      ...|++++|+.+|+++++..        +....++..+|.++...|++++|+.+|++++++        +|+...++..+
T Consensus       283 ~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l  346 (359)
T 3ieg_A          283 SKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL  346 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence            99999999999999999861        223578999999999999999999999999998        88888888888


Q ss_pred             HHHHHHcC
Q 004811          649 AGTYDAIG  656 (729)
Q Consensus       649 a~~~~~~g  656 (729)
                      +.++..++
T Consensus       347 ~~~~~~~~  354 (359)
T 3ieg_A          347 EKAQRLLK  354 (359)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=8.4e-26  Score=246.40  Aligned_cols=390  Identities=13%  Similarity=0.141  Sum_probs=322.1

Q ss_pred             CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH----cCChHHHHHHHH
Q 004811          218 PGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLE  289 (729)
Q Consensus       218 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~  289 (729)
                      +..+.+++.+|..++.    .++ +++|+.+|++|++.        .   .+.+++.||.+|..    .+++++|+.+|+
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            4567899999999998    776 99999999999863        1   25678999999999    999999999999


Q ss_pred             HhcccchhhccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---
Q 004811          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---  362 (729)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  362 (729)
                      ++.+..       +    ..+++.||.+|..    .+++++|+.+|+++.+.          ....+++.||.+|..   
T Consensus       104 ~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g  162 (490)
T 2xm6_A          104 KAALKG-------L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG  162 (490)
T ss_dssp             HHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence            998652       2    2358889999999    89999999999998765          346789999999998   


Q ss_pred             -hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004811          363 -ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (729)
Q Consensus       363 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (729)
                       .+++++|+.+|+++++..    .      ..++..+|.+|..    .+++++|+.+|+++...        ....++..
T Consensus       163 ~~~d~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~  224 (490)
T 2xm6_A          163 VTRDYVMAREWYSKAAEQG----N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH  224 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence             889999999999998752    1      4679999999998    89999999999998752        22467889


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCC
Q 004811          438 IGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       438 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      +|.+|..    .+++++|+.+|+++++.          ....+++.+|.+|..    .+++++|+.+|+++++.      
T Consensus       225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------  288 (490)
T 2xm6_A          225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------  288 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence            9999997    89999999999999864          235688999999999    89999999999999764      


Q ss_pred             CCChHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESM-----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSF  581 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  581 (729)
                      +     ...++..+|.+|...     +++++|+.+|+++.+..     .    ..+++.+|.+|...|   ++++|+.+|
T Consensus       289 ~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-----~----~~a~~~lg~~y~~~g~~~~~~~A~~~~  354 (490)
T 2xm6_A          289 G-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-----D----ATAQANLGAIYFRLGSEEEHKKAVEWF  354 (490)
T ss_dssp             T-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-----C----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             C-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-----C----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence            1     245788999999998     89999999999998741     1    467889999999877   899999999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---
Q 004811          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---  654 (729)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  654 (729)
                      +++++.       .   ...+++.+|.+|..    .+++++|+.+|+++++.          ....++++||.+|..   
T Consensus       355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence            999874       1   25789999999999    89999999999999874          235689999999999   


Q ss_pred             -cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          655 -IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       655 -~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                       .+++++|+.+|+++++..     +..|....+..+|+.++...  ...|. ...++.++..|
T Consensus       415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~--~~~a~-~~a~~~~~~~~  469 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQ--LQQAE-LLSQQYIEKYA  469 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHH--HHHHH-HHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhH--HHHHH-HHHHHHHHHHH
Confidence             899999999999999873     22266788888998887653  34444 33444444434

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=2.5e-26  Score=244.86  Aligned_cols=315  Identities=17%  Similarity=0.183  Sum_probs=278.7

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (729)
                      +..+..+..+|..++..|++++|+.+|++++++.     +.++.....++..+|.+|...|++++|+.+|++++.+....
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            4556778889999999999999999999999885     55555556679999999999999999999999999997764


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC--------------
Q 004811          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------  407 (729)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------  407 (729)
                        .+.+....++..+|.+|...|++++|+.+|++++.+.+...  .....+.++..+|.++...|+              
T Consensus       120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence              33477889999999999999999999999999999987765  335667889999999999999              


Q ss_pred             ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004811          408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (729)
Q Consensus       408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (729)
                         +++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+.....  +......++..+|.+|
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence               99999999999998888888888899999999999999999999999999999987754  3456677999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004811          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (729)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (729)
                      ...|++++|+.+|++++.+....   .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus       274 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l  349 (411)
T 4a1s_A          274 IFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL  349 (411)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence            99999999999999999998763   3455668899999999999999999999999999999877 4555667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          565 GVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                      |.+|...|++++|+.+|++++++.+..
T Consensus       350 a~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          350 GNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999986543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=3.4e-26  Score=243.81  Aligned_cols=313  Identities=16%  Similarity=0.200  Sum_probs=278.0

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      +.....+..+|..+...|++++|+.+|++++++.+.    +....+.++..+|.++...|++++|+.+|++++.+....+
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  120 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN  120 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            566778889999999999999999999999998433    2234457899999999999999999999999999988888


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-----------------  489 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  489 (729)
                      +.+....++..+|.+|...|++++|+.+|++++.+.....  +.+....++..+|.+|...|+                 
T Consensus       121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~  198 (411)
T 4a1s_A          121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA  198 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence            8899999999999999999999999999999999988765  467888999999999999999                 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004811          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (729)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (729)
                      +++|+.++++++.+....   .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.+|.
T Consensus       199 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~  274 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHI  274 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHH
Confidence            999999999999987763   3467778899999999999999999999999999999886 444556678999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (729)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (729)
                      ..|++++|+.+|++++.+......  ......++..+|.++...|++++|+.+|++++.+......  .+....++..+|
T Consensus       275 ~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la  350 (411)
T 4a1s_A          275 FLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLG  350 (411)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHH
Confidence            999999999999999999887643  3445788999999999999999999999999999877643  466677999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHH
Q 004811          650 GTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      .+|..+|++++|+.+|++++.+.+
T Consensus       351 ~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          351 NAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHh
Confidence            999999999999999999999853

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.96  E-value=6.9e-26  Score=233.64  Aligned_cols=312  Identities=19%  Similarity=0.222  Sum_probs=273.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      ...+...|..++..|++++|+.+|+++++..     +.++.....++..+|.++...|++++|+.++++++.+....  .
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   77 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   77 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence            4457778999999999999999999999874     45555556779999999999999999999999999997765  2


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCC-----------------
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-----------------  407 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-----------------  407 (729)
                      +.+....++..+|.++...|++++|+.++++++++.+...+  ....+.++..+|.++...|+                 
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            34667889999999999999999999999999999988753  35557789999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004811          408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (729)
Q Consensus       408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (729)
                         +++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.++
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence               99999999999998888888888899999999999999999999999999999987754  3566677999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004811          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (729)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (729)
                      ...|++++|+.++++++.+....   .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l  309 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL  309 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            99999999999999999998763   3466678899999999999999999999999999998876 4455667788999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          565 GVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                      |.+|...|++++|..+|++++++.+..
T Consensus       310 a~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          310 GNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999986553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=1.2e-25  Score=245.07  Aligned_cols=351  Identities=15%  Similarity=0.090  Sum_probs=301.9

Q ss_pred             HHHHHHHHHHHHH----cCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004811          265 VMCLHVIAAIYCS----LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLE  336 (729)
Q Consensus       265 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  336 (729)
                      +.+++.+|.+|..    .+++++|+.+|+++++..       +    ..+++.||.+|..    .+++++|+.+|+++.+
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            6778899999999    899999999999998652       1    2358899999999    9999999999999976


Q ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----hCCH
Q 004811          337 VQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDH  408 (729)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~  408 (729)
                      .          ....+++.||.+|..    .+++++|+.+|+++.+..          ...++..+|.+|..    .+++
T Consensus       108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A          108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------RDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCH
Confidence            5          345788999999999    889999999999997752          14679999999998    8899


Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004811          409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (729)
Q Consensus       409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (729)
                      ++|+.+|+++...        ....++..+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|
T Consensus       168 ~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y  229 (490)
T 2xm6_A          168 VMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADMY  229 (490)
T ss_dssp             HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence            9999999998752        235788999999998    89999999999999874          2356889999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004811          485 NR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQST  556 (729)
Q Consensus       485 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (729)
                      ..    .+++++|+.+|+++++.      +     ...++..+|.+|..    .+++++|+.+|+++.+.     +.   
T Consensus       230 ~~g~g~~~~~~~A~~~~~~a~~~------~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~---  290 (490)
T 2xm6_A          230 YFGIGVTQDYTQSRVLFSQSAEQ------G-----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GN---  290 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHTT------T-----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TC---
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CC---
Confidence            97    89999999999999865      1     24578899999998    89999999999999754     11   


Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 004811          557 VAGIEAQMGVMYYML-----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARS  628 (729)
Q Consensus       557 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~  628 (729)
                       ..+++.+|.+|...     +++++|+.+|+++++.       .   ...++..+|.+|...|   ++++|+.+|+++++
T Consensus       291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence             46778999999998     9999999999999874       1   2468899999999877   89999999999987


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRV  700 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~  700 (729)
                      .          ....+++.||.+|..    .+++++|+.+|+++++.          ....++++||.+|..    .+++
T Consensus       360 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          360 K----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCCH
Confidence            5          235689999999999    89999999999999863          246789999999999    8999


Q ss_pred             hHHHHHHHHHHHhhc
Q 004811          701 RSRKAQSLETLLDAN  715 (729)
Q Consensus       701 ~~A~~~~l~~al~~~  715 (729)
                      ++|. .+|+++++.+
T Consensus       420 ~~A~-~~~~~A~~~~  433 (490)
T 2xm6_A          420 VQAW-AWFDTASTND  433 (490)
T ss_dssp             HHHH-HHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHCC
Confidence            9999 9999999998

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.95  E-value=3.1e-25  Score=228.70  Aligned_cols=309  Identities=16%  Similarity=0.170  Sum_probs=271.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (729)
Q Consensus       309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (729)
                      ..++..|..+...|++++|+.+|+++++..     +.++ ....++..+|.++...|++++|+.++++++.+.....  .
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~   78 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D   78 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence            357889999999999999999999999982     2222 2367899999999999999999999999999987765  3


Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR--------------------  447 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------  447 (729)
                      ....+.++..+|.++...|++++|+.++.+++.+....++.+....++..+|.++...|+                    
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA  158 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence            355678899999999999999999999999999998888888888999999999999999                    


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 004811          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (729)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (729)
                      +++|+.++++++.+.....  +.+....++..+|.++...|++++|+.++++++.+....   .+......++..+|.++
T Consensus       159 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence            9999999999999887764  457778899999999999999999999999999997762   34566778999999999


Q ss_pred             HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 004811          528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (729)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  607 (729)
                      ...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+......  ......++..+|
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la  310 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLG  310 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence            99999999999999999999886 555566788899999999999999999999999999887655  344577899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          608 LACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      .++...|++++|..+|++++.+..+
T Consensus       311 ~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          311 NAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=7.6e-27  Score=244.74  Aligned_cols=317  Identities=16%  Similarity=0.141  Sum_probs=251.3

Q ss_pred             HHHHHcCChHHHHH-HHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004811          273 AIYCSLGQYNEAIP-VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (729)
Q Consensus       273 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (729)
                      .++...|+|++|+. .|++++.+.     +..+......++.+|.++...|++++|+.+|+++++.        +|....
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~   99 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME   99 (368)
T ss_dssp             -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred             hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            36777899999999 999999885     3332222335889999999999999999999999988        688889


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh-
Q 004811          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-  430 (729)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-  430 (729)
                      ++..+|.++...|++++|+.+|++++++.+..        ..++..+|.++...|++++|+..+++++........... 
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  171 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  171 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            99999999999999999999999999987553        367999999999999999999999999864322111000 


Q ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          431 ---------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCEN  499 (729)
Q Consensus       431 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (729)
                               ....+..++.++ ..|++++|+.+|++++.+        .|.  ...++..+|.++...|++++|+.+|++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  242 (368)
T 1fch_A          172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  242 (368)
T ss_dssp             --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                     011122466666 999999999999999998        666  688999999999999999999999999


Q ss_pred             HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (729)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (729)
                      ++.+         .|....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.
T Consensus       243 al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          243 ALSV---------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence            9998         33346789999999999999999999999999986544       5788999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC---CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          580 SFKNAISKLRAIGER---KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       580 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      +|++++.+.+...+.   .......+|..+|.++...|++++|..+++++++.+.+.++
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence            999999987653211   11123678999999999999999999999999998877654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.6e-26  Score=236.56  Aligned_cols=301  Identities=15%  Similarity=0.169  Sum_probs=260.4

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      +.....+..+|..++..|++++|+.+|++++...+....        ++..++.++...|++++|+.++.+++..     
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----   85 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------CLPVHIGTLVELNKANELFYLSHKLVDL-----   85 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------THHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------hHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence            444567889999999999999999999999998776653        3778899999999999999999999864     


Q ss_pred             CChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          427 QDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                       .|....++..+|.++...| ++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++....
T Consensus        86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  156 (330)
T 3hym_B           86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK  156 (330)
T ss_dssp             -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred             -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence             3444578899999999999 999999999999987        677788999999999999999999999999999933


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (729)
                      .         ...++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.+|++++
T Consensus       157 ~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          157 G---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             T---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             c---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            2         34567789999999999999999999999876554       5788999999999999999999999999


Q ss_pred             HHHHHhCCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          586 SKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI  664 (729)
Q Consensus       586 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  664 (729)
                      .+.+....... +....++..+|.++...|++++|+.+|++++++        .|....++..+|.+|..+|++++|+.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHH
Confidence            98765544321 223568999999999999999999999999998        788888999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCChhHHHHHHHHHHHH-HHhCCHh
Q 004811          665 LEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVR  701 (729)
Q Consensus       665 ~~~al~~~~~~~g~~~p~~~~~~~~La~~~-~~~g~~~  701 (729)
                      |++++++        .|+...++..++.++ ...|+.+
T Consensus       293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            9999975        688888999999988 5666644

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=2.6e-26  Score=240.64  Aligned_cols=318  Identities=16%  Similarity=0.140  Sum_probs=248.7

Q ss_pred             HHHHhcCHHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004811          359 AHVQALQFSEAQK-FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (729)
Q Consensus       359 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (729)
                      ++...|+|++|+. .|.+++.+.+.....    .+..++.+|.++...|++++|+.+|++++..      .|....++..
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~  103 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLR----DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQY  103 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTT----TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCccc----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence            5666789999999 999998776544311    1234789999999999999999999999753      4556678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----
Q 004811          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP-----  512 (729)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----  512 (729)
                      +|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++.+.........     
T Consensus       104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T 1fch_A          104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG  175 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            999999999999999999999998        6788899999999999999999999999999987432100000     


Q ss_pred             --hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          513 --PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (729)
Q Consensus       513 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (729)
                        .......+..++.++ ..|++++|+.+|++++.+.+...     ...++..+|.++...|++++|+.+|++++.+.  
T Consensus       176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--  247 (368)
T 1fch_A          176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--  247 (368)
T ss_dssp             ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence              000011122466666 89999999999999999876521     25788899999999999999999999999862  


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                            +....++..+|.++...|++++|+.+|++++.+        +|....++..+|.+|..+|++++|+.+|++++.
T Consensus       248 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          248 ------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                  123578999999999999999999999999998        788889999999999999999999999999999


Q ss_pred             HHHHHcC---CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          671 IREEKLG---TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       671 ~~~~~~g---~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +.....+   ..++....++..|+.++...|++++|. ..++++++..++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~  362 (368)
T 1fch_A          314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDLSTLLT  362 (368)
T ss_dssp             HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCHHHHHH
T ss_pred             hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHHHHHHH
Confidence            8643311   123444789999999999999999999 988888776554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=2.3e-25  Score=229.44  Aligned_cols=295  Identities=16%  Similarity=0.114  Sum_probs=256.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004811          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (729)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (729)
                      .+..+|..+...|++++|+.+|++++..        +|....++..++.++...|++++|+.+++++++..+...     
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----   90 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP-----   90 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----
Confidence            3778999999999999999999999988        677778888999999999999999999999999876543     


Q ss_pred             HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          390 EEAADRRLMGLICETKG-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (729)
Q Consensus       390 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (729)
                         .++..+|.++...| ++++|+.+|++++..      .+....++..+|.++...|++++|+.+|++++..       
T Consensus        91 ---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------  154 (330)
T 3hym_B           91 ---VSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-------  154 (330)
T ss_dssp             ---HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence               56999999999999 999999999998753      3445577899999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (729)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (729)
                       .|....++..+|.++...|++++|+.+|++++..         .+....++..+|.++...|++++|+.++++++.+.+
T Consensus       155 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  224 (330)
T 3hym_B          155 -MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI---------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK  224 (330)
T ss_dssp             -TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             -ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence             5666778888999999999999999999999987         233467899999999999999999999999999987


Q ss_pred             hCCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          549 DAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (729)
Q Consensus       549 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (729)
                      ......  +....++..+|.++...|++++|+.+|++++++.+        ....++..+|.++...|++++|+.+|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--------QNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--------cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            653221  23346788999999999999999999999998721        13468899999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChH
Q 004811          627 RSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLD  659 (729)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  659 (729)
                      +++        +|+...++..++.++ ...|+.+
T Consensus       297 l~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          297 LGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             Hcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            998        888888999999998 4556543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.1e-23  Score=222.08  Aligned_cols=350  Identities=12%  Similarity=0.078  Sum_probs=272.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHH-----------HHHH
Q 004811          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQ-----------KFCQ  374 (729)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~-----------~~~~  374 (729)
                      +...++-...+...+++++|...++++.+.....  +.+++.. .++.+  .......+++..+.           ..++
T Consensus        12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~   88 (383)
T 3ulq_A           12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL   88 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence            3345555666788999999999999987765332  1222222 33322  22223344444444           4554


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA  454 (729)
Q Consensus       375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  454 (729)
                      ++-. .+...  ........++.+|.++...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.+
T Consensus        89 ~i~~-~~~~~--~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~  165 (383)
T 3ulq_A           89 EIDK-KQARL--TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY  165 (383)
T ss_dssp             HHHH-HTHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHh-cCCCc--hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4322 21111  11222345667999999999999999999999988888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH
Q 004811          455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (729)
Q Consensus       455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (729)
                      ++++++++..... ..+..+.++..+|.+|...|++++|+.+|++++++.+..   .+.+..+.++.++|.+|..+|+++
T Consensus       166 ~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~  241 (383)
T 3ulq_A          166 ARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQPQLMGRTLYNIGLCKNSQSQYE  241 (383)
T ss_dssp             HHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHCCCHH
Confidence            9999999877632 256778899999999999999999999999999998874   457778889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC
Q 004811          535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (729)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  614 (729)
                      +|+.+|++++.+.... +..+....++..+|.+|...|++++|+.++++++.+.+..++..   ....+..+|.++...|
T Consensus       242 ~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~~~~~~~  317 (383)
T 3ulq_A          242 DAIPYFKRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI---YLSEFEFLKSLYLSGP  317 (383)
T ss_dssp             HHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCC
Confidence            9999999999998876 44355688999999999999999999999999999988765532   2334677999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                      ++    ..+++++..+++...  .+....++..+|.+|..+|++++|+.+|++++.+.+++..
T Consensus       318 ~~----~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          318 DE----EAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             CH----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             cH----HHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            95    445555555555422  5777889999999999999999999999999998876544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=2.1e-25  Score=233.65  Aligned_cols=305  Identities=14%  Similarity=0.125  Sum_probs=239.1

Q ss_pred             HHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004811          286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ  365 (729)
Q Consensus       286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  365 (729)
                      ..+.+++...     +.++......++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|+
T Consensus        48 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~  114 (365)
T 4eqf_A           48 SASEKGYYFH-----TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENEN  114 (365)
T ss_dssp             -----CCCCC-----SSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhcc-----cCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCC
Confidence            4455555443     2222223345889999999999999999999999998        68889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHH
Q 004811          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDT  441 (729)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~  441 (729)
                      +++|+.+|++++.+.+..        ..++..+|.++...|++++|+.+|++++.+........    .....+..+|.+
T Consensus       115 ~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~  186 (365)
T 4eqf_A          115 EQAAIVALQRCLELQPNN--------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS  186 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred             HHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence            999999999999986544        46799999999999999999999999987643322211    123445567999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004811          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (729)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (729)
                      +...|++++|+.+|++++.+        .|.  ...++..+|.+|...|++++|+.+|++++++         .|....+
T Consensus       187 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~  249 (365)
T 4eqf_A          187 PVDSSVLEGVKELYLEAAHQ--------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------RPEDYSL  249 (365)
T ss_dssp             --CCHHHHHHHHHHHHHHHH--------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHH
T ss_pred             HhhhhhHHHHHHHHHHHHHh--------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHH
Confidence            99999999999999999998        566  6789999999999999999999999999998         3334678


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----  595 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----  595 (729)
                      +..+|.++...|++++|+.+|++++++.+..       ..++..+|.+|...|++++|+.+|++++.+.+......    
T Consensus       250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  322 (365)
T 4eqf_A          250 WNRLGATLANGDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH  322 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence            9999999999999999999999999986654       57889999999999999999999999999876543321    


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      ......+|..++.++...|+.+.|..+..+.+..+.+.++
T Consensus       323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~  362 (365)
T 4eqf_A          323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFN  362 (365)
T ss_dssp             ----CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcC
Confidence            1123578999999999999999999988887766555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=3.2e-25  Score=232.24  Aligned_cols=283  Identities=17%  Similarity=0.112  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (729)
                      ..++.+|..+...|++++|+.+|++++..      .|....++..+|.++...|++++|+.+|++++.+        .|.
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~  131 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPN  131 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence            34888899999999999999999988764      3445678899999999999999999999999998        677


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (729)
                      ...++..+|.+|...|++++|+.+|++++.+......... .......+..+|.++...|++++|+.+|++++.+.+...
T Consensus       132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  211 (365)
T 4eqf_A          132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI  211 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred             CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence            8889999999999999999999999999988322100000 001123445569999999999999999999999865421


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (729)
                           ...++..+|.+|...|++++|+.+|++++++.        +....++..+|.++...|++++|+.+|++++++  
T Consensus       212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  276 (365)
T 4eqf_A          212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--  276 (365)
T ss_dssp             -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence                 15688899999999999999999999999872        123578999999999999999999999999999  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh----HHHHHHHHHHHHHHhCCHhHHHHHH
Q 004811          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD----VDDEKRRLAELLKEAGRVRSRKAQS  707 (729)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~  707 (729)
                            +|....++..+|.+|..+|++++|+.+|++++++.....++.++.    ...++..|+.++...|+.+.+. ..
T Consensus       277 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~  349 (365)
T 4eqf_A          277 ------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ-AA  349 (365)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH-HH
T ss_pred             ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence                  888899999999999999999999999999999976544433222    3678999999999999999988 66


Q ss_pred             HHHH
Q 004811          708 LETL  711 (729)
Q Consensus       708 l~~a  711 (729)
                      .++.
T Consensus       350 ~~~~  353 (365)
T 4eqf_A          350 NLGD  353 (365)
T ss_dssp             HTTC
T ss_pred             HHhh
Confidence            5553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.7e-23  Score=220.55  Aligned_cols=353  Identities=12%  Similarity=0.063  Sum_probs=274.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHH-HHHHHHcCChHHHH-----------H
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-AAIYCSLGQYNEAI-----------P  286 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------~  286 (729)
                      +.....+.........++ +++|..+++++...+...   ..+++....+..+ .......+++..+.           .
T Consensus        10 ~~v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~---~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~   85 (383)
T 3ulq_A           10 SSIGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQM---EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD   85 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence            455666777778888987 999999999988776543   1233333222222 22223344455554           5


Q ss_pred             HHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH
Q 004811          287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF  366 (729)
Q Consensus       287 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  366 (729)
                      .+++.-...    ...........++.+|.++...|++++|+.+|++++.+....  ++.+..+.++..+|.+|...|++
T Consensus        86 ~~~~i~~~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~  159 (383)
T 3ulq_A           86 LLLEIDKKQ----ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQT  159 (383)
T ss_dssp             HHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcC----CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCH
Confidence            555432221    111112233456779999999999999999999999886542  22355789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004811          367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS  446 (729)
Q Consensus       367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  446 (729)
                      ++|+.++++++++.+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..+|
T Consensus       160 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  238 (383)
T 3ulq_A          160 YFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS  238 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence            9999999999999988753 245668899999999999999999999999999999998888899999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 004811          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (729)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (729)
                      ++++|+.+|++++.+.+...  +.+....++..+|.+|...|++++|+.++++++.+.....    .+.....+..++.+
T Consensus       239 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~  312 (383)
T 3ulq_A          239 QYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG----DVIYLSEFEFLKSL  312 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Confidence            99999999999999988765  1277899999999999999999999999999999976631    23333447789999


Q ss_pred             HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      +...|++    ..+.+++...... +.......++..+|.+|...|++++|..+|++++.+.+.+..
T Consensus       313 ~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          313 YLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            9999995    4455555555544 444556778889999999999999999999999998766544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=1.7e-23  Score=214.97  Aligned_cols=278  Identities=17%  Similarity=0.122  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (729)
                      ..++.+|..+...|++++|+.+|++++..      .|....++..+|.++...|++++|+.++++++..        .|.
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~   87 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   87 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcC
Confidence            44789999999999999999999999864      3445678889999999999999999999999998        677


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH--------------HH-HHHhcchHHHHH
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV--------------SS-IYESMNELEQAI  537 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~  537 (729)
                      ...++..+|.++...|++++|+.+|++++......         ...+..+              +. ++...|++++|+
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---------TTC--------------------CCTTSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence            78999999999999999999999999999874331         1222222              44 588899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHH
Q 004811          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN  617 (729)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  617 (729)
                      .++++++...+..       ..++..+|.++...|++++|+.++++++...        +....++..+|.++...|+++
T Consensus       159 ~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~  223 (327)
T 3cv0_A          159 TLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQ  223 (327)
T ss_dssp             HHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHH
Confidence            9999999886654       5788999999999999999999999999862        123578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC----ChhHHHHHHHHHHH
Q 004811          618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA----NPDVDDEKRRLAEL  693 (729)
Q Consensus       618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~----~p~~~~~~~~La~~  693 (729)
                      +|+.+|+++++.        .|....++..+|.+|...|++++|+.+|++++.+.....+..    ......++..++.+
T Consensus       224 ~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  295 (327)
T 3cv0_A          224 EALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML  295 (327)
T ss_dssp             HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence            999999999998        788888999999999999999999999999998852110000    01178899999999


Q ss_pred             HHHhCCHhHHHHHHHHHHHhhccc
Q 004811          694 LKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       694 ~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +...|++++|. ..+++++...|+
T Consensus       296 ~~~~g~~~~A~-~~~~~~l~~~~~  318 (327)
T 3cv0_A          296 LNVMNRPDLVE-LTYAQNVEPFAK  318 (327)
T ss_dssp             HHHTTCHHHHH-HHTTCCSHHHHH
T ss_pred             HHhcCCHHHHH-HHHHHHHHhcch
Confidence            99999999999 999999998887

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=1.4e-22  Score=212.92  Aligned_cols=337  Identities=12%  Similarity=0.096  Sum_probs=257.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH--HHHhcCHHHHH---------HHHHHHHHHHHhcCC
Q 004811          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA--HVQALQFSEAQ---------KFCQMALDIHKDNGS  385 (729)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~  385 (729)
                      .+...+++++|...++++.......-  .+... ..++.+...  ....+.+..+.         ..++..-......  
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--   95 (378)
T 3q15_A           21 KMIRQFSVPDAEILKAEVEQDIQQME--EDQDL-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--   95 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHGGGBC--CCHHH-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHhc--ccHHH-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence            34789999999999999866643321  12222 233333222  11223322222         3333322111111  


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (729)
Q Consensus       386 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (729)
                       +.......++.+|..+...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.+++++++++...
T Consensus        96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A           96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence             1122344678899999999999999999999999888888888899999999999999999999999999999998765


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 004811          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (729)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (729)
                      .. ..+..+.++..+|.+|...|++++|+.+|++++++.+..   .+....+.++.++|.+|..+|++++|+.+|++++.
T Consensus       175 ~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          175 PL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            31 134678899999999999999999999999999998773   34567788999999999999999999999999999


Q ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC---HHHHHHH
Q 004811          546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS---INEAVEL  622 (729)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~  622 (729)
                      +.... +.+.. ..++..+|.++...|++++|+.++++++.+....+...   ....+..++.++...++   +.+|+.+
T Consensus       251 ~~~~~-~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          251 VSREK-VPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF---YKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHH-CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC---HHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHhh-CChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            98765 33333 78899999999999999999999999999876654432   33456788888988888   5555555


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                      +++       ..  ..+....++..+|.+|...|++++|+.+|++++++.+++..
T Consensus       326 ~~~-------~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          326 FEK-------KN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             HHH-------TT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh-------CC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            544       22  25677788899999999999999999999999998776543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=6.5e-22  Score=207.94  Aligned_cols=339  Identities=13%  Similarity=0.069  Sum_probs=260.1

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH--HHHHcCChHHHH---------HHHHHhccc
Q 004811          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA--IYCSLGQYNEAI---------PVLEQSIEI  294 (729)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~~  294 (729)
                      .--......++ +++|..+++++...+....   .+.... .++.+-.  .....+.+..+.         ..+++.-..
T Consensus        17 ~~wy~~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~   91 (378)
T 3q15_A           17 NEWYKMIRQFS-VPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP   91 (378)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred             HHHHHHHHHcC-HHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence            33334467775 9999999999877665442   223332 2222222  122234444343         455443222


Q ss_pred             chhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004811          295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQ  374 (729)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  374 (729)
                      .    .+.+.......++.+|..+...|++++|+.+|++++.+....  .+.+..+.++..+|.+|...|++++|+.+++
T Consensus        92 ~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           92 Q----KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             G----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             C----CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            1    111223334467889999999999999999999999886543  2236688899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA  454 (729)
Q Consensus       375 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  454 (729)
                      +++++.+.... .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.+
T Consensus       166 ~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~  244 (378)
T 3q15_A          166 QALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH  244 (378)
T ss_dssp             HHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999987653 13456788999999999999999999999999999988888888899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch--
Q 004811          455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE--  532 (729)
Q Consensus       455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--  532 (729)
                      |++++.+.+...   +|....++..+|.++...|++++|+.++++++.+.....    .+.....+..++.++...++  
T Consensus       245 ~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~~  317 (378)
T 3q15_A          245 FQKAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDER  317 (378)
T ss_dssp             HHHHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcHH
Confidence            999999988775   677799999999999999999999999999999976642    22334456788888888888  


Q ss_pred             -HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          533 -LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       533 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                       +.+|+.++++       . +.......++..+|.+|...|++++|..+|++++++.+.+
T Consensus       318 ~~~~al~~~~~-------~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  369 (378)
T 3q15_A          318 KIHDLLSYFEK-------K-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI  369 (378)
T ss_dssp             HHHHHHHHHHH-------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-------C-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence             5555555544       3 3344556778899999999999999999999999986654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=3.5e-22  Score=220.05  Aligned_cols=425  Identities=12%  Similarity=0.004  Sum_probs=310.9

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhccc
Q 004811          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (729)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  294 (729)
                      ..+|....+|..++.. ...|+ +++|+..|++|++.+         |.....|..++..+...|++++|+.+|++++..
T Consensus         7 ~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~   75 (530)
T 2ooe_A            7 EENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK   75 (530)
T ss_dssp             HHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             hhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            4578899999999984 77886 999999999999864         455778999999999999999999999999988


Q ss_pred             chhhccccchHHHHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-------
Q 004811          295 PVIEEGQEHALAKFAGHMQLGD-TYAMLGQLENSLM----CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ-------  362 (729)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------  362 (729)
                      .     + +.    ..|..++. +....|++++|..    .|++++..    .|. ++....+|..++.....       
T Consensus        76 ~-----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~  140 (530)
T 2ooe_A           76 V-----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSY  140 (530)
T ss_dssp             C-----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSST
T ss_pred             C-----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccH
Confidence            5     3 21    23666664 4456788887776    55555543    232 34556777777776655       


Q ss_pred             --hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811          363 --ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-------------ETKGDHEAALEHLVLASMTMIANDQ  427 (729)
Q Consensus       363 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~  427 (729)
                        .|++++|..+|++++.. |..    ..  ...+.......             ...+++..|...+............
T Consensus       141 ~~~~~~~~a~~~y~~al~~-P~~----~~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~  213 (530)
T 2ooe_A          141 AENQRITAVRRVYQRGCVN-PMI----NI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR  213 (530)
T ss_dssp             THHHHHHHHHHHHHHHTTS-CCT----TH--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhHHHHHHHHHHHHHhc-hhh----hH--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence              78999999999999983 321    11  11222222111             2345677777766653322222211


Q ss_pred             -----Ch-------hHHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-
Q 004811          428 -----DA-------EVASVDCSIGDTYLS----LSRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-  486 (729)
Q Consensus       428 -----~~-------~~~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-  486 (729)
                           .|       .....|.........    .++.    ..++..|++++..        .|....+|..+|.++.. 
T Consensus       214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~  285 (530)
T 2ooe_A          214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS  285 (530)
T ss_dssp             SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence                 11       112344333322222    1232    4788899999998        68888999999999986 


Q ss_pred             ------cCCHH-------HHHHHHHHHHH-HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811          487 ------TGKLR-------ESKSYCENALR-IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (729)
Q Consensus       487 ------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (729)
                            .|+++       +|+..|+++++ +         .|....++..++.++...|++++|+..|++++++.+..  
T Consensus       286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--  354 (530)
T 2ooe_A          286 SKLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--  354 (530)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC--
T ss_pred             chhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC--
Confidence                  79987       88999999886 4         23346789999999999999999999999999863322  


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Q 004811          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILE  631 (729)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~  631 (729)
                          ...+|..++.++...|++++|+.+|+++++..    +.    ....+...+.+ +...|++++|..+|+++++.  
T Consensus       355 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~~----~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--  420 (530)
T 2ooe_A          355 ----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RT----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--  420 (530)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----TC----CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred             ----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----CC----chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence                13578899999999999999999999998741    11    12233344444 34689999999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLET  710 (729)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (729)
                            .|+...++..++.++...|++++|..+|++++...     +.+|. ....+.....+....|+.+.+. ..+++
T Consensus       421 ------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-----~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r  488 (530)
T 2ooe_A          421 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKR  488 (530)
T ss_dssp             ------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-----CSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHH
Confidence                  67778899999999999999999999999998752     33453 3557777788888999999999 99999


Q ss_pred             HHhhccc
Q 004811          711 LLDANSR  717 (729)
Q Consensus       711 al~~~p~  717 (729)
                      +++..|+
T Consensus       489 ~~~~~p~  495 (530)
T 2ooe_A          489 RFTAFRE  495 (530)
T ss_dssp             HHHHTHH
T ss_pred             HHHHCch
Confidence            9999995

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=7e-23  Score=210.42  Aligned_cols=289  Identities=14%  Similarity=0.093  Sum_probs=238.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      ...++.+|..++..|++++|+.+|++++...     +..    ..++..+|.++...|++++|+.+|++++..       
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------   84 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PER----EEAWRSLGLTQAENEKDGLAIIALNHARML-------   84 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence            4557889999999999999999999999875     333    335889999999999999999999999998       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHH-HH-HHHHhCCHHHHHHHHHH
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE-----EAADRRLM-GL-ICETKGDHEAALEHLVL  417 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~a~~~~~l-g~-~~~~~g~~~~A~~~~~~  417 (729)
                       +|....++..+|.++...|++++|+..+++++...+.........     .......+ +. ++...|++++|+.++++
T Consensus        85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  163 (327)
T 3cv0_A           85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA  163 (327)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred             -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence             678889999999999999999999999999999877655331100     00001112 44 58889999999999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (729)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (729)
                      ++..      .+....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.+|
T Consensus       164 ~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          164 ALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8764      3334678899999999999999999999999998        6777889999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc-----HHHHHHHHHHHHHHcC
Q 004811          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYMLG  572 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g  572 (729)
                      +++++.         .+....++..+|.++...|++++|+.+|++++.+.+...+....     ...++..+|.++...|
T Consensus       230 ~~a~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          230 NRALDI---------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHc---------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence            999998         23346688999999999999999999999999998774222211     4678899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhCC
Q 004811          573 NYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       573 ~~~~A~~~~~~al~~~~~~~~  593 (729)
                      ++++|..++++++...+...+
T Consensus       301 ~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          301 RPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             CHHHHHHHTTCCSHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhcchhhh
Confidence            999999999999988766543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.91  E-value=4.9e-21  Score=200.92  Aligned_cols=312  Identities=13%  Similarity=0.074  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC
Q 004811          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (729)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (729)
                      ...++..+|.++...|++++|+.++++++...+..   .....+.++..+|.++...|++++|+.++.+++.+....++.
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            45677888999999999999999999999876422   223456678999999999999999999999999998888777


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      .....++..+|.++...|++++|+.++++++.+.....+..++....++..+|.++...|++++|+.++++++.+.....
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence            77788899999999999999999999999999988876554577888999999999999999999999999999976532


Q ss_pred             CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                          ++....++..+|.++...|++++|+.++++++.+.+.. +... ........++.++...|++++|..++.+++..
T Consensus       170 ----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          170 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             ----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence                23356788999999999999999999999999987654 2221 11122224556688999999999999988753


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF  667 (729)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  667 (729)
                      .    ..........+..+|.++...|++++|...+++++........  .+....++..+|.++...|++++|..++++
T Consensus       245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  318 (373)
T 1hz4_A          245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  318 (373)
T ss_dssp             C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            2    1111222346788999999999999999999999998776422  234456889999999999999999999999


Q ss_pred             HHHHHHH
Q 004811          668 VVGIREE  674 (729)
Q Consensus       668 al~~~~~  674 (729)
                      ++.+...
T Consensus       319 al~~~~~  325 (373)
T 1hz4_A          319 ALKLANR  325 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9988753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.91  E-value=3.2e-22  Score=203.91  Aligned_cols=282  Identities=17%  Similarity=0.231  Sum_probs=227.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      .++|....++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.+|...|++++|+.+|++++.+..
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45778889999999999999999999999999999999888777899999999999999999999999999999999976


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (729)
                      ... +.+.+....++..+|.++...|++++|+.++++++.+.....+. .+....++..+|.++...|++++|+.+|+++
T Consensus       101 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          101 KTL-GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHh-CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            532 23457778999999999999999999999999999998654222 2456778999999999999999999999999


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCChh------HHHHHHHHHHHHHHcCC
Q 004811          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHPD------TLGVYSNLAGTYDAIGR  657 (729)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~~~~~~g~  657 (729)
                      +.+.........+....++..+|.++...|++++|+.+|++++.+..... +...+.      ....+..++..+...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS  259 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence            99988876666677788999999999999999999999999999855421 100111      23344555666667778


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +.+|...++++..        .+|....++..+|.+|...|++++|. .+|++++++.|+
T Consensus       260 ~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~~~  310 (311)
T 3nf1_A          260 FGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAE-TLEEAAMRSRKQ  310 (311)
T ss_dssp             SCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHC-
T ss_pred             HHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHhhc
Confidence            8888888887774        37999999999999999999999999 999999999874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.1e-21  Score=199.82  Aligned_cols=279  Identities=19%  Similarity=0.176  Sum_probs=227.3

Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004811          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (729)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  421 (729)
                      .+.++|....++..+|.++...|++++|+.+|++++++............+.++..+|.++...|++++|+.++++++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999887765556777889999999999999999999999999988


Q ss_pred             HHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          422 MIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (729)
Q Consensus       422 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (729)
                      ....  .+.+....++..+|.++...|++++|+.+|++++.+.....+.+++....++..+|.++...|++++|+.+|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7665  66788899999999999999999999999999999998887777899999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC----CCC----CcHHHHHHHHHHHHHHc
Q 004811          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP----GQQ----STVAGIEAQMGVMYYML  571 (729)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~----~~~~~~~~~la~~~~~~  571 (729)
                      ++.+..... +.+.+....++..+|.++...|++++|+.++++++.+.+...    ...    ......+..++..+...
T Consensus       179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3nf1_A          179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG  257 (311)
T ss_dssp             HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence            999987753 345677788999999999999999999999999999876420    000    11223344445555566


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      +.+.+|...+.++...        .+....++..+|.+|...|++++|+.+|++++++
T Consensus       258 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          258 TSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            6666666677666543        3456789999999999999999999999999987

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-21  Score=192.25  Aligned_cols=236  Identities=16%  Similarity=0.155  Sum_probs=210.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ..+..+..+|.++...|++++|+.+|++++..        . ....++..+|.++...|++++|+.++++++.+....  
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--   71 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM--   71 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence            34678899999999999999999999999998        3 556889999999999999999999999999996653  


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                      ..+.+....++..+|.++...|++++|+.+|++++.+.+.               +.++...|++++|+..+++++..  
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence            2234445789999999999999999999999999987532               45677888999999999998875  


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                            .+....++..+|.++...|++++|+.+|++++..        +|....++..+|.+|...|++++|+.+|++++
T Consensus       135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  3446788999999999999999999999999998        78888899999999999999999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      .+        +|....++..+|.++...|++++|. ..|+++++++|
T Consensus       201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~  238 (258)
T 3uq3_A          201 EK--------DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKDA  238 (258)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHH
T ss_pred             Hh--------CHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhCh
Confidence            87        5778889999999999999999999 99999999993

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=2.1e-22  Score=201.09  Aligned_cols=263  Identities=9%  Similarity=-0.016  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (729)
                      ..++.+|.+++..|++++|+..|+++++..|....        ++..+|.++...|++++|+.++++++.   ...+...
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~   72 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKA   72 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhH
Confidence            46788999999999999999999999998876543        489999999999999999999999976   1233344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      ...++..+|.++...|++++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++++       
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------  137 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------  137 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence            4678899999999999999999999999998        7778899999999999999999999999999887       


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISK  587 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  587 (729)
                        .+....++..+|......+++++|+.+|++++++.+..       ..++..+|.++...|+   +++|+..|++++++
T Consensus       138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  208 (272)
T 3u4t_A          138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV  208 (272)
T ss_dssp             --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence              33346789999944455569999999999999987665       5778899999999999   99999999999998


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (729)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (729)
                      ..............++..+|.+|...|++++|+.+|++++++        +|+...++..++.+....+
T Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence            755433222334578999999999999999999999999999        8888888888877765443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=1.7e-22  Score=209.90  Aligned_cols=241  Identities=11%  Similarity=0.037  Sum_probs=214.4

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHh
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE  505 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  505 (729)
                      ..|....++..+|.++...|++++|+..|++++.+        +|....+|+.+|.++..+|+ +++|+.+|++++.+  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            45778889999999999999999999999999998        89999999999999999997 99999999999999  


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (729)
                             .|....+|.++|.++..+|++++|+.+|++++++.+..       ..+|.++|.++..+|++++|+.+|++++
T Consensus       162 -------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                   45567889999999999999999999999999998776       5889999999999999999999999999


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--C
Q 004811          586 SKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEA-----VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG--R  657 (729)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~  657 (729)
                      ++        .+....+|+++|.++.. .|.+++|     +.+|++++.+        +|+...+|++++.++...|  +
T Consensus       228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~  291 (382)
T 2h6f_A          228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK  291 (382)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred             Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence            97        22356799999999999 5555777     5999999999        8999999999999999988  6


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--------C-HhHHHHHHHHHH-Hhhccc
Q 004811          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG--------R-VRSRKAQSLETL-LDANSR  717 (729)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g--------~-~~~A~~~~l~~a-l~~~p~  717 (729)
                      +++|++.++++ +        .+|+...++..||.+|..+|        + +++|+ ..|+++ ++++|.
T Consensus       292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~  351 (382)
T 2h6f_A          292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTI  351 (382)
T ss_dssp             CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGG
T ss_pred             hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCch
Confidence            89998887665 2        36888899999999999985        2 58999 999999 999997

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=3.8e-22  Score=207.28  Aligned_cols=254  Identities=11%  Similarity=0.002  Sum_probs=222.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcC
Q 004811          389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNKG  467 (729)
Q Consensus       389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~  467 (729)
                      +..+.++..+|.++...|++++|+..|++++.+      .|....+|+.+|.++..+|+ +++|+.+|++++.+      
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------  161 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------  161 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH------
Confidence            344677999999999999999999999999875      56677899999999999997 99999999999999      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                        +|....+|+++|.++..+|++++|+.+|++++++         .|....+|.++|.++..+|++++|+.+|++++++.
T Consensus       162 --~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l---------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~  230 (382)
T 2h6f_A          162 --QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED  230 (382)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             --CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence              8999999999999999999999999999999999         55567899999999999999999999999999998


Q ss_pred             HhCCCCCCcHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC--CHHHH
Q 004811          548 NDAPGQQSTVAGIEAQMGVMYYM-LGNYSDS-----YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEA  619 (729)
Q Consensus       548 ~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A  619 (729)
                      +..       ..+|+++|.++.. .|.+++|     +.+|++++.+.        +....+|+++|.++...|  ++++|
T Consensus       231 P~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--------P~~~~a~~~l~~ll~~~g~~~~~~a  295 (382)
T 2h6f_A          231 VRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRGLSKYPNL  295 (382)
T ss_dssp             TTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred             CCC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHccCccchHHH
Confidence            766       6889999999999 5555777     58899999862        224679999999999988  68999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------ChHHHHHHHHHH-HHHHHHHcCCCChhHHHHHHH
Q 004811          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------RLDDAIEILEFV-VGIREEKLGTANPDVDDEKRR  689 (729)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~g~~~p~~~~~~~~  689 (729)
                      ++.++++ +.        +|+...++..||.+|..+|         .+++|+.+|+++ +++        +|.....|..
T Consensus       296 ~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~~  358 (382)
T 2h6f_A          296 LNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWRY  358 (382)
T ss_dssp             HHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHHH
T ss_pred             HHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHHH
Confidence            8888776 43        7888889999999999985         258899999888 654        7999999999


Q ss_pred             HHHHHHHh
Q 004811          690 LAELLKEA  697 (729)
Q Consensus       690 La~~~~~~  697 (729)
                      ++..+..+
T Consensus       359 ~~~~l~~~  366 (382)
T 2h6f_A          359 IGRSLQSK  366 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.89  E-value=8.9e-23  Score=203.84  Aligned_cols=247  Identities=14%  Similarity=0.092  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      ..++.+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++..      ..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~   69 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK------VNA   69 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------cCc
Confidence            45678999999999999999999999987        6777778999999999999999999999999984      222


Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      ......++..+|.++...|++++|+.+|++++++.+..       ..++..+|.+|...|++++|+.+|++++.+     
T Consensus        70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            33447789999999999999999999999999987655       368899999999999999999999999876     


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 004811          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVV  669 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al  669 (729)
                         .+....++..+|..+...+++++|+.+|++++++        .|....++..+|.++..+|+   +++|+..|++++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence               1224578899994555556999999999999999        88888999999999999999   999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++......+..+....++..+|.+|...|++++|+ .+|+++++++|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~  253 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPT  253 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCcc
Confidence            98754322212235688999999999999999999 999999999998

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7e-21  Score=188.11  Aligned_cols=254  Identities=17%  Similarity=0.117  Sum_probs=218.0

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      +..+.++..+|.++...|++++|+.+|+++++.. ..        ..++..+|.++...|++++|+.++.+++.+.....
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            3467889999999999999999999999999987 22        25799999999999999999999999998776553


Q ss_pred             -CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          427 -QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       427 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                       ..+....++..+|.++...|++++|+.+|++++.+        .+.        +.++...|++++|+..+++++..  
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence             34445789999999999999999999999999997        343        46677888999999999999887  


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (729)
                             .+....++..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++
T Consensus       135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                   56678899999999999999999999999999987654       4788999999999999999999999999


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (729)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (729)
                      +..        +....++..+|.++...|++++|+.+|++++++......  .|....++..++.+
T Consensus       201 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          201 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA  256 (258)
T ss_dssp             HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred             HhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence            862        223578999999999999999999999999999544432  36667777766654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.89  E-value=3.6e-22  Score=214.29  Aligned_cols=385  Identities=13%  Similarity=0.089  Sum_probs=271.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCCh---HHHHHHHHHhcccchhhccc
Q 004811          225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY---NEAIPVLEQSIEIPVIEEGQ  301 (729)
Q Consensus       225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~  301 (729)
                      ..+|..++..|+ +++|+.+|+++.+.      +     .+.+++.||.+|...|++   ++|+.+|+++++..      
T Consensus         7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~------   68 (452)
T 3e4b_A            7 QRLANEALKRGD-TVTAQQNYQQLAEL------G-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS------   68 (452)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHH------T-----CCTGGGTCC--------------------------------
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC------
Confidence            467888999997 99999999999764      1     134577899999999998   99999999998541      


Q ss_pred             cchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811          302 EHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (729)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (729)
                            ..+++.||.++...+     ++++|+.+|++++..          ....+++.||.+|...+...++...++..
T Consensus        69 ------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~  132 (452)
T 3e4b_A           69 ------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----------GEGNTLIPLAMLYLQYPHSFPNVNAQQQI  132 (452)
T ss_dssp             --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----------TCSSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence                  224888999777766     889999999999874          12238899999999888766665555544


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHH
Q 004811          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGF  453 (729)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~  453 (729)
                      ....+...       +.+++.+|.+|...+.+++++............  .++.   +++.+|.+|...|   ++++|+.
T Consensus       133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~  200 (452)
T 3e4b_A          133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK  200 (452)
T ss_dssp             HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence            44443322       246899999999999777776664443332222  2232   7899999999999   9999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-H-
Q 004811          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-Y-  527 (729)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~-  527 (729)
                      +|+++.+.        .+..+..++.+|.+|...    +++++|+.+|+++.   ..         ...++++||.+ + 
T Consensus       201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence            99999987        566677779999999766    79999999999987   21         25678899998 4 


Q ss_pred             -HhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          528 -ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-----NYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       528 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                       ...+++++|+.+|+++.+.     +    ...+++++|.+|. .|     ++++|+.+|+++. .       .   ...
T Consensus       261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~  319 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA  319 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred             CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence             4689999999999999854     2    1567889999998 66     9999999999987 1       1   357


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 004811          602 ALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       602 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  673 (729)
                      +++++|.+|..    ..++++|+.+|+++.+.          ....+.++||.+|..    ..++.+|..+|+++.+.  
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--  387 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ--  387 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence            89999999887    34999999999999763          234578999999985    46999999999999863  


Q ss_pred             HHcCCCChhHHHHHHHHHHHHHH--hCCHhHHHHHHHHHHHhhccc
Q 004811          674 EKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al~~~p~  717 (729)
                           .+   ..+...++.+...  .++..+|. ..+++.....+.
T Consensus       388 -----g~---~~a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~~  424 (452)
T 3e4b_A          388 -----DT---PEANDLATQLEAPLTPAQRAEGQ-RLVQQELAARGT  424 (452)
T ss_dssp             -----CC---HHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred             -----CC---HHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhccc
Confidence                 12   3345555555433  34555666 677766665544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.89  E-value=4.1e-20  Score=193.88  Aligned_cols=313  Identities=11%  Similarity=-0.001  Sum_probs=249.7

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (729)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (729)
                      ...++..+|.++...|++++|+.++++++....    ..++.....++..+|.++...|++++|+.++++++.+.+..  
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   86 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   86 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence            356677889999999999999999999998752    22333455678899999999999999999999999997763  


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  423 (729)
                      .+......++..+|.++...|++++|+.++++++.+.+.......+..+.++..+|.++...|++++|+.++.+++.+..
T Consensus        87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            11123456788999999999999999999999999998876654455677889999999999999999999999998766


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENAL  501 (729)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al  501 (729)
                      ..+... ...++..+|.++...|++++|..++++++.+.....   .+.....  ...++.++...|++++|..++++++
T Consensus       167 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          167 SYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             TSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            554333 557888999999999999999999999998854322   1211122  2245566889999999999999887


Q ss_pred             HHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (729)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (729)
                      ....    +. .......+..++.++...|++++|+..+++++...+.. +.......++..+|.++...|++++|...+
T Consensus       243 ~~~~----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          243 KPEF----AN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CCCC----TT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCC----Cc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5421    11 11223357889999999999999999999999998875 444445567888999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 004811          582 KNAISKLRAIG  592 (729)
Q Consensus       582 ~~al~~~~~~~  592 (729)
                      ++++.+....+
T Consensus       317 ~~al~~~~~~g  327 (373)
T 1hz4_A          317 LDALKLANRTG  327 (373)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHhcccc
Confidence            99999876543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.88  E-value=4.3e-21  Score=192.39  Aligned_cols=268  Identities=17%  Similarity=0.136  Sum_probs=220.5

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004811          319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM  398 (729)
Q Consensus       319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  398 (729)
                      ...|++++|+.+|++++++..+..+.++|....++..+|.++...|++++|+.+|++++.+.........+..+.++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45789999999999999999999888889999999999999999999999999999999998877666667788999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004811          399 GLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (729)
Q Consensus       399 g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (729)
                      |.++...|++++|+.+|.+++.+....  .+.+....++..+|.++...|++++|+.+|++++.+++...+++.+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999999876554  446888999999999999999999999999999999999888888999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc
Q 004811          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (729)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (729)
                      +..+|.++...|++++|+.+|++++.+......+...+.....+..++..+...+....+. .+..+...........+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCHH
Confidence            9999999999999999999999999986542212223334456666777666655544443 345555555555445566


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                      ...++..+|.+|...|++++|+.+|++++++
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7788999999999999999999999999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=1.5e-21  Score=187.41  Aligned_cols=197  Identities=19%  Similarity=0.236  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      ..++..+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+..|++++++        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            457889999999999999999999999998        8999999999999999999999999999999999        


Q ss_pred             ChHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          512 PPEEIASGLTDVSSIYESM-----------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (729)
                       .|....++..+|.++...           |++++|+..|++++++.|..       ..++..+|.++...|++++|+..
T Consensus        69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~  140 (217)
T 2pl2_A           69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEAS  140 (217)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHH
Confidence             455578899999999999           99999999999999997765       57889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004811          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (729)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (729)
                      |++++++.         ....++..+|.++...|++++|+..|++++++        +|+...++..+|.++..+|++++
T Consensus       141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC------
T ss_pred             HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHH
Confidence            99999972         13578899999999999999999999999999        89999999999999999999999


Q ss_pred             HHHHHHHHH
Q 004811          661 AIEILEFVV  669 (729)
Q Consensus       661 A~~~~~~al  669 (729)
                      |+..|+++-
T Consensus       204 A~~~~~~~~  212 (217)
T 2pl2_A          204 AARAAALEH  212 (217)
T ss_dssp             ---------
T ss_pred             HHHHHHHHh
Confidence            999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=5.4e-20  Score=202.51  Aligned_cols=387  Identities=10%  Similarity=-0.027  Sum_probs=275.1

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (729)
                      |....+|..++.. ...|++++|+..|+++++..     |..    ..+|..++..+...|++++|...|++++..    
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~----   75 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMK----   75 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence            4456678888874 78999999999999999986     333    335899999999999999999999999988    


Q ss_pred             hCCCCchHHHHHHHHHH-HHHHhcCHHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---------hCC
Q 004811          342 LGETDPRVGETCRYLAE-AHVQALQFSEAQK----FCQMALDIHKDNGSPASLEEAADRRLMGLICET---------KGD  407 (729)
Q Consensus       342 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~---------~g~  407 (729)
                          .|. ...|..++. .....|+++.|.+    .|++++...+...  ..   ..+|...+.....         .|+
T Consensus        76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~  145 (530)
T 2ooe_A           76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR  145 (530)
T ss_dssp             ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred             ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence                564 457777775 4445688877766    6666665433221  11   3446666665554         789


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCC---CCh
Q 004811          408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGE---NHP  471 (729)
Q Consensus       408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~~  471 (729)
                      ++.|..+|++++..    +.. .....+...+...             ...+++..|...+.............   -.|
T Consensus       146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence            99999999998751    111 1122222222211             13456677776666543332222100   011


Q ss_pred             -------hHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-------
Q 004811          472 -------AVASVFVRLADMYNRT----GKL----RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-------  529 (729)
Q Consensus       472 -------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-------  529 (729)
                             .....|..........    ++.    .+++..|++++..         .|....+|..+|.++..       
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---------~p~~~~~w~~~~~~~~~~~~~~~~  291 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---------LGHHPDIWYEAAQYLEQSSKLLAE  291 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---------HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhchhhhh
Confidence                   1234444443332221    232    4788999999998         34447789999999886       


Q ss_pred             cchHH-------HHHHHHHHHHH-HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          530 MNELE-------QAIKLLQKALK-IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       530 ~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                      .|+++       +|+..|++++. +.|..       ..++..++.++...|++++|...|++++++     .  +.....
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~--p~~~~~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----E--DIDPTL  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----S--SSCHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----c--ccCchH
Confidence            78877       88899998886 44432       578899999999999999999999999985     1  111235


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (729)
                      +|..++.++.+.|++++|+.+|++|++.        .|.....+...+.+ +...|++++|..+|+++++..        
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------  421 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------  421 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------
Confidence            8899999999999999999999999986        44444455555554 446999999999999999874        


Q ss_pred             hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      |+...++..++.++...|+.++|. ..|++++...|.
T Consensus       422 p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~  457 (530)
T 2ooe_A          422 GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSL  457 (530)
T ss_dssp             TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred             CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence            677788999999999999999999 999999998653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.88  E-value=7.4e-22  Score=211.82  Aligned_cols=353  Identities=14%  Similarity=0.061  Sum_probs=250.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhCCC
Q 004811          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL---ENSLMCYTTGLEVQKQVLGET  345 (729)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~  345 (729)
                      ..+|..++..|++++|+.+|+++.+..     .  +    .+++.||.+|...|++   ++|+.+|+++++.        
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-----~--~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------   67 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG-----Y--S----EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-----C--C----TGGGTCC---------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC-----C--H----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence            347899999999999999999997642     1  1    2377899999999998   9999999999854        


Q ss_pred             CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                         ...+++.||.++...+     ++++|+.+|+++++..  ..        .+++.||.+|...+...++...++....
T Consensus        68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~  134 (452)
T 3e4b_A           68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQ  134 (452)
T ss_dssp             ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence               3467889999766665     8899999999998832  11        2488999999988776555444433332


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004811          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG---KLRESKSYC  497 (729)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  497 (729)
                      ....     ....+++.+|.+|...+.++++.............    .++.   +++.||.+|...|   ++++|+.+|
T Consensus       135 a~~~-----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~  202 (452)
T 3e4b_A          135 WQAA-----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQM  202 (452)
T ss_dssp             HHHH-----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHH
Confidence            2221     12357789999999999777776664433332211    1333   8999999999999   999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-H--HH
Q 004811          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-Y--YM  570 (729)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~--~~  570 (729)
                      +++.+.      +   +..+..+++||.+|...    +++++|+.+|+++.   +..       ..+++++|.+ +  ..
T Consensus       203 ~~aa~~------g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~  263 (452)
T 3e4b_A          203 EAGVSR------G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPE  263 (452)
T ss_dssp             HHHHHT------T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGG
T ss_pred             HHHHHC------C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCC
Confidence            999987      2   22355668999999765    79999999999987   444       3678899998 4  56


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-----SINEAVELFEEARSILEQECGPYHPDTLGVY  645 (729)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (729)
                      .+++++|+.+|+++.+.          ....+++.+|.+|. .|     ++++|+.+|+++. .          ....++
T Consensus       264 ~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----------g~~~A~  321 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----------REVAAD  321 (452)
T ss_dssp             GCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----------TCHHHH
T ss_pred             CCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----------CCHHHH
Confidence            89999999999999863          13578999999998 56     9999999999987 2          234588


Q ss_pred             HHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHhhccc
Q 004811          646 SNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       646 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++||.+|..    ..++++|+.+|+++.+          +....+.++||.+|..    ..++.+|. .+|+++.+..+.
T Consensus       322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~~  390 (452)
T 3e4b_A          322 YYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDTP  390 (452)
T ss_dssp             HHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCCH
T ss_pred             HHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCCH
Confidence            999999987    4499999999999985          3345688999999985    45899999 999999876543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.87  E-value=2.3e-20  Score=186.99  Aligned_cols=270  Identities=17%  Similarity=0.221  Sum_probs=222.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      ....|++++|+.+|+++++++.+..+.+++....++..+|.+|...|++++|+.+|++++.+..... +.+++....++.
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~   89 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN   89 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence            3567899999999999999999998888899999999999999999999999999999999986643 345678889999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (729)
                      .+|.++...|++++|+.+|++++.+.....+.. +....++..+|.++...|++++|+.+|++++.+.........+...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            999999999999999999999999987654443 4667889999999999999999999999999998888776677788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          601 VALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      .++..+|.++...|++++|+.+|++++.+..... +..++....++..++..+...+....+.. +..+.... +..+..
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~  247 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWY-KACKVD  247 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHH-HhcCCC
Confidence            9999999999999999999999999999866533 22345555577778877777666655554 44444333 344567


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                      +|....++..||.+|...|++++|. ..|++++++.
T Consensus       248 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~  282 (283)
T 3edt_B          248 SPTVNTTLRSLGALYRRQGKLEAAH-TLEDCASRNR  282 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhh
Confidence            8999999999999999999999999 9999998763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=2.8e-21  Score=185.53  Aligned_cols=200  Identities=18%  Similarity=0.139  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      |....++..+|.++...|++++|+..|++++++         .|....++..+|.++...|++++|+..|++++++.|..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            344568899999999999999999999999988         44557889999999999999999999999999997765


Q ss_pred             CCCCCcHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHH
Q 004811          551 PGQQSTVAGIEAQMGVMYYML-----------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA  619 (729)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  619 (729)
                             ..++..+|.++...           |++++|+..|++++++.        +....++..+|.++...|++++|
T Consensus        73 -------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           73 -------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             -------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             -------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHH
Confidence                   57889999999999           99999999999999872        22467899999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                      +..|++++++        + +...++..+|.+|..+|++++|+..|++++++        +|+...++..+|.++...|+
T Consensus       138 ~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~  200 (217)
T 2pl2_A          138 EASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGK  200 (217)
T ss_dssp             HHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccC
Confidence            9999999999        6 67779999999999999999999999999987        68888999999999999999


Q ss_pred             HhHHHHHHHHHHH
Q 004811          700 VRSRKAQSLETLL  712 (729)
Q Consensus       700 ~~~A~~~~l~~al  712 (729)
                      +++|+ ..|+++-
T Consensus       201 ~~~A~-~~~~~~~  212 (217)
T 2pl2_A          201 AEEAA-RAAALEH  212 (217)
T ss_dssp             -------------
T ss_pred             HHHHH-HHHHHHh
Confidence            99999 8888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.86  E-value=8.3e-20  Score=183.47  Aligned_cols=278  Identities=12%  Similarity=0.039  Sum_probs=216.8

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004811          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (729)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (729)
                      ...+..|+|..|+..++++....|..       .......++.+|...|+++.|+..++.         ..+....++..
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~~   70 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVRM   70 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHHH
Confidence            34667899999999988765544332       124567889999999999999986643         13446678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 004811          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (729)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (729)
                      ++..+...+++++|+..+++++..      ..+|....+++.+|.++...|++++|+..|++     .         ...
T Consensus        71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~---------~~~  130 (291)
T 3mkr_A           71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G---------DSL  130 (291)
T ss_dssp             HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C---------CSH
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C---------CCH
Confidence            999999999999999999988764      01477788999999999999999999999987     1         125


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      .++..+|.++..+|++++|+..|+++++..+..     ........+..++...|++++|+.+|+++++..    +    
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----p----  197 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----S----  197 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----C----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----C----
Confidence            678899999999999999999999999885432     111111112233344589999999999999862    1    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHc
Q 004811          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEILEFVVGIREEKL  676 (729)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~  676 (729)
                      ....+++.+|.++...|++++|+..|++++..        +|+...++.++|.++...|++.+ +..++++++++     
T Consensus       198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-----  264 (291)
T 3mkr_A          198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-----  264 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence            13578999999999999999999999999999        89999999999999999999976 56899999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          677 GTANPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                         +|+.+.+.    .+..+.+.++++.
T Consensus       265 ---~P~~~~~~----d~~~~~~~fd~~~  285 (291)
T 3mkr_A          265 ---HRSHPFIK----EYRAKENDFDRLV  285 (291)
T ss_dssp             ---CTTCHHHH----HHHHHHHHHHHHH
T ss_pred             ---CCCChHHH----HHHHHHHHHHHHH
Confidence               34444332    3455555666665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=3.6e-19  Score=178.80  Aligned_cols=260  Identities=13%  Similarity=0.067  Sum_probs=209.8

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811          400 LICETKGDHEAALEHLVLASMTMIANDQDAEV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV  478 (729)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  478 (729)
                      ...+..|+|..|+..+++..      ...|.. ......++.+|..+|+++.|+..++..           .+....++.
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a~~   69 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVK------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQAVR   69 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSC------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHHHH
Confidence            34577899999999887542      234444 457788899999999999999866541           344678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 004811          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (729)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (729)
                      .++..+...+++++|+..+++++...       ..|....++..+|.++...|++++|+.++++     +       ...
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~-------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~-------~~~  130 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRS-------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G-------DSL  130 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSC-------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C-------CSH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcc-------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C-------CCH
Confidence            99999999999999999999987641       0233466799999999999999999999987     1       124


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      .++..+|.++..+|++++|+..|+++++..     +... .......+..++...|++++|+.+|+++++.        +
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~  196 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------C  196 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------C
Confidence            678899999999999999999999998862     1111 1111111223344568999999999999998        7


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      |....++..+|.++..+|++++|+..|++++.+        +|+.+.++.++|.++...|+..++...+++++++++|+
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            888889999999999999999999999999987        68889999999999999999987543899999999998

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=2.8e-19  Score=180.27  Aligned_cols=250  Identities=11%  Similarity=0.073  Sum_probs=199.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004811          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (729)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (729)
                      ++++|+.+|.++                      |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus        32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~   89 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS   89 (292)
T ss_dssp             HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            488888888776                      4467788999999999999999988888878889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004811          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (729)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (729)
                      +|++++|+.+|++++.+....+  +....+.++.++|.+|... |++++|+.+|++++++....   ........++.++
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~~~~~~~~~~~l  164 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKC  164 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHH
Confidence            9999999999999999987654  2344578899999999996 99999999999999997652   2244456789999


Q ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 004811          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (729)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (729)
                      |.++..+|++++|+.+|++++.+.+...........++..+|.++..+|++++|+.+|++++.+.+......   ....+
T Consensus       165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---~~~~l  241 (292)
T 1qqe_A          165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFL  241 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH---HHHHH
Confidence            999999999999999999999987665322234556788999999999999999999999998765543221   23456


Q ss_pred             HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004811          604 NQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (729)
Q Consensus       604 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  652 (729)
                      ..++..+.  ..+++++|+..|++++.+        +|....++..+-..+
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence            66676665  457799999999888777        787776666655544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=9.5e-18  Score=190.18  Aligned_cols=360  Identities=15%  Similarity=0.095  Sum_probs=218.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHH---------------HH---------HHHHHHHHcCCh
Q 004811          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC---------------LH---------VIAAIYCSLGQY  281 (729)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~---------------~~---------~la~~~~~~g~~  281 (729)
                      ..++.+...|. +.+|++.+++++-- .....  .+++.-..               +.         .+|.++...|.|
T Consensus       990 ~~vKaf~~agl-p~EaieLLEKivl~-~s~fs--~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A          990 VTVKAFMTADL-PNELIELLEKIVLD-NSVFS--EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred             HHHHHHHhCCC-HHHHHHHHHHHHcC-CCccc--ccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence            45677788886 99999999999822 11000  11111111               11         125566666666


Q ss_pred             HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004811          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (729)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (729)
                      ++|..+|+++-..                ...+...+...+++++|+++++++             ....+|..+|.++.
T Consensus      1066 EEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A         1066 EEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred             HHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHHHH
Confidence            6666666665311                011222233455555555554432             23456667777777


Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004811          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (729)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (729)
                      ..|++++|+..|.++     +.        ...+..+|.++...|++++|+++|..+.......       .+...+|.+
T Consensus      1117 ~~G~~kEAIdsYiKA-----dD--------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-------~Idt~Lafa 1176 (1630)
T 1xi4_A         1117 QKGMVKEAIDSYIKA-----DD--------PSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------YVETELIFA 1176 (1630)
T ss_pred             hCCCHHHHHHHHHhc-----CC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-------cccHHHHHH
Confidence            777777777777654     10        1346666777777777777777776665432110       111236666


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      |.+++++++ ++.|   +.         .+.. ..+..+|..+...|+|++|+.+|.++                 ..|.
T Consensus      1177 YAKl~rlee-le~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~ny~ 1225 (1630)
T 1xi4_A         1177 LAKTNRLAE-LEEF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFG 1225 (1630)
T ss_pred             HHhhcCHHH-HHHH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hHHH
Confidence            666666663 3322   11         1222 34446777777777777777777664                 1356


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                      .++.++..+|++++|++.+++|..            ..+|...+.++...|+|..|..+... +..           .+.
T Consensus      1226 rLA~tLvkLge~q~AIEaarKA~n------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~~d 1281 (1630)
T 1xi4_A         1226 RLASTLVHLGEYQAAVDGARKANS------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------HAD 1281 (1630)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHhCC------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------CHH
Confidence            667777777777777777776622            14566667777777777777666553 211           234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      .+..++..|...|.|++|+.+++.++.+        ++.....+..||.+|.+  -++..+++++|...+.+-+-+   .
T Consensus      1282 eLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~---r 1350 (1630)
T 1xi4_A         1282 ELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---R 1350 (1630)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh---H
Confidence            5667888899999999999999999988        67777788778887765  456777788877766541100   0


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                      --+.+..|..+..+|.+-|+++.|+
T Consensus      1351 ~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1351 AAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHH
Confidence            0145677889999999999999998

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=1.1e-18  Score=174.22  Aligned_cols=226  Identities=13%  Similarity=0.157  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhc
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  506 (729)
                      ...+++.+|.++...|++++|+.+|+++++.          ....++..+|.+|..    .+++++|+.+|+++++.   
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---   71 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   71 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence            3456777888888888888888888887762          223567778888888    88888888888888766   


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH----cCCHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSY  578 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  578 (729)
                         +     ...++..+|.+|..    .+++++|+.+|+++++..         ...++..+|.+|..    .+++++|+
T Consensus        72 ---~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A           72 ---N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             ---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ---C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHH
Confidence               1     24567788888888    888888888888887641         14567788888888    88888888


Q ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (729)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (729)
                      .+|+++++.-          ...++..+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|..
T Consensus       135 ~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          135 EYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHc
Confidence            8888887631          23567778888887    78888888888888765          123577788888888


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHhhccc
Q 004811          655 ----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       655 ----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~  717 (729)
                          .+++++|+.+|+++++.        .+  ..+++.||.+|..    .+++++|+ .+|++++++.|+
T Consensus       195 g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~~  254 (273)
T 1ouv_A          195 GEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAK  254 (273)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCH
T ss_pred             CCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCCH
Confidence                88888888888888764        12  5677788888887    88888888 888888888776

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.83  E-value=1.3e-18  Score=173.75  Aligned_cols=226  Identities=15%  Similarity=0.166  Sum_probs=197.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHH----cCChHHHHHHHHHhc
Q 004811          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLEQSI  292 (729)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al  292 (729)
                      .|+.+.+++.+|..++..|+ +++|+.+|+++++.           ....++..+|.+|..    .+++++|+.+|++++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~-----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~   69 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACDL-----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   69 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence            46778899999999999997 99999999999871           125678999999999    999999999999998


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hc
Q 004811          293 EIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----AL  364 (729)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g  364 (729)
                      +..           ...+++.+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|..    .+
T Consensus        70 ~~~-----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           70 DLN-----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred             HCC-----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence            763           23358999999999    99999999999999876          256789999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004811          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (729)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (729)
                      ++++|+.+|+++++...          ..++..+|.++..    .+++++|+.+|++++..        ....++..+|.
T Consensus       129 ~~~~A~~~~~~a~~~~~----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~  190 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLND----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN  190 (273)
T ss_dssp             CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence            99999999999998531          3568999999999    99999999999999753        12467899999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 004811          441 TYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRI  503 (729)
Q Consensus       441 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  503 (729)
                      +|..    .+++++|+.+|+++++.        .+  ..++..+|.+|..    .+++++|+.+|+++++.
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            9999    99999999999999986        23  6788999999999    99999999999999998

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=1.2e-19  Score=177.42  Aligned_cols=221  Identities=16%  Similarity=0.196  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ..+..++.+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++..      
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------   86 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------   86 (243)
T ss_dssp             ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence            44567889999999999999999999999986        6777899999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                         .+....++..+|.++...|++++|+.+++++++..+..       ..++..+|.++...|++++|+.++++++...+
T Consensus        87 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  156 (243)
T 2q7f_A           87 ---DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE  156 (243)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             ---CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence               23346789999999999999999999999999986544       46788999999999999999999999998621


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                              ....++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++
T Consensus       157 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          157 --------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             --------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                    13568899999999999999999999999998        78888899999999999999999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                      ++        +|+...++..++.+....|
T Consensus       221 ~~--------~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          221 DI--------QPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HH--------CTTCHHHHHHHTC------
T ss_pred             cc--------CcchHHHHHHHHHHHhhcc
Confidence            87        5777778877777665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=4e-19  Score=179.10  Aligned_cols=245  Identities=15%  Similarity=0.126  Sum_probs=194.8

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (729)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (729)
                      ++++|+.+|.++                    |.+|...|++++|+.+|++++.+.....  +.+..+.++.++|.+|..
T Consensus        32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~   89 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKS   89 (292)
T ss_dssp             HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence            488888888765                    5578889999999999999999987764  345568899999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 004811          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (729)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (729)
                      +|++++|+.+|++++.+....   .+....+.++.++|.+|... |++++|+.+|++++++.+.. +.......++.++|
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg  165 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHR---GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA  165 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence            999999999999999998763   23555678999999999996 99999999999999999876 33344467789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH---
Q 004811          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL---  642 (729)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---  642 (729)
                      .++..+|++++|+.+|++++.+....... ......++..+|.++..+|++++|+.+|++++.+        +|...   
T Consensus       166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~  236 (292)
T 1qqe_A          166 DLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--------DPNFADSR  236 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------------
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCCCcH
Confidence            99999999999999999999864322111 1123457899999999999999999999999987        34332   


Q ss_pred             --HHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811          643 --GVYSNLAGTYD--AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       643 --~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (729)
                        ..+..++..+.  ..+++++|+..|++++.+        +|.....+..+-..+
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI  284 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence              24556677665  467788999888877643        677776666665554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.83  E-value=3.2e-19  Score=166.42  Aligned_cols=178  Identities=18%  Similarity=0.225  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004811          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (729)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (729)
                      ..+|+++|.+|..+|++++|+.+|++++++.|..       ..++..+|.+|...|++++|+..+.+++...        
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--------   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLD--------   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------
Confidence            5689999999999999999999999999997765       5789999999999999999999999998762        


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      +....++..+|.++...++++.|...+.+++.+        +|....++..+|.+|..+|++++|+..|++++++     
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----  136 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----  136 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence            223578889999999999999999999999999        8888999999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccccCCCccccc
Q 004811          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIELC  726 (729)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~~~~~~l~~~  726 (729)
                         +|....++..+|.+|..+|++++|+ ..|+++++++|+.....++++
T Consensus       137 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~a~~~lali  182 (184)
T 3vtx_A          137 ---KPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEEKKAKYELALV  182 (184)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTHHHHHHCSCCS
T ss_pred             ---cchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCccCHHHHHHhh
Confidence               6888999999999999999999999 999999999998222344443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=6.1e-17  Score=183.65  Aligned_cols=352  Identities=15%  Similarity=0.112  Sum_probs=261.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHH
Q 004811          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK  307 (729)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  307 (729)
                      |..+...|. |++|..+|+++...             .   ..+...+...+++++|+++++++-.              
T Consensus      1056 A~Iai~lgl-yEEAf~IYkKa~~~-------------~---~A~~VLie~i~nldrAiE~Aervn~-------------- 1104 (1630)
T 1xi4_A         1056 ANIAISNEL-FEEAFAIFRKFDVN-------------T---SAVQVLIEHIGNLDRAYEFAERCNE-------------- 1104 (1630)
T ss_pred             HHHHHhCCC-HHHHHHHHHHcCCH-------------H---HHHHHHHHHHhhHHHHHHHHHhcCC--------------
Confidence            777777776 77777777776311             1   1123334488999999999987632              


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004811          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (729)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (729)
                      ..+|+.+|.++...|++++|+..|.++             +....|..+|.++.+.|+|++|+++|..+.+..+...   
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--- 1168 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--- 1168 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---
Confidence            235999999999999999999999774             3457788899999999999999999999988764322   


Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (729)
                            +-..+|.+|.+++++++ ++.|..          .+.. ..+..+|..+...|+|++|..+|.++         
T Consensus      1169 ------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A         1169 ------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred             ------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence                  13358999999999885 444421          2223 35567999999999999999999885         


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                             ..|..+|.+|.++|++++|++.+++|..              ..+|...+.++...|+|..|..+... +...
T Consensus      1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~ 1279 (1630)
T 1xi4_A         1222 -------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 1279 (1630)
T ss_pred             -------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC
Confidence                   3678899999999999999999998832              36788999999999999999988764 3222


Q ss_pred             HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 004811          548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEE  625 (729)
Q Consensus       548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~  625 (729)
                                +..+..++..|...|.|++|+.+++.++.+-        ......+..+|.+|.+  -++..+++++|..
T Consensus      1280 ----------~deLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A         1280 ----------ADELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred             ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                      2345578999999999999999999998862        2244567777777765  4577888888888


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI------REEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                      .+.+-+-+.   --+....|..+..+|.+-|+++.|+...-.....      +...+  ..+.+++.+++....|...+
T Consensus      1342 rini~k~~r---~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1342 RVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred             hcccchHhH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHHhhC
Confidence            777611000   0155668889999999999999999544433211      12221  24556778888888888655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=3.5e-19  Score=177.85  Aligned_cols=258  Identities=14%  Similarity=0.015  Sum_probs=202.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811          399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV  478 (729)
Q Consensus       399 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  478 (729)
                      +......|++++|+..|++++...  ....+....++..+|.++...|++++|+.+|++++.+        .|....++.
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~   81 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN   81 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence            334445688999999999887531  1234678899999999999999999999999999998        677889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 004811          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (729)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (729)
                      .+|.++...|++++|+.+|++++.+.         |....++..+|.++...|++++|+.+|++++.+.+..       .
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~  145 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELD---------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P  145 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcC---------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence            99999999999999999999999983         3335789999999999999999999999999986554       1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      ..... ..++...|++++|+.++.+++....    ...     ....++.++...++.++|+..+++++......    .
T Consensus       146 ~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~  211 (275)
T 1xnf_A          146 FRSLW-LYLAEQKLDEKQAKEVLKQHFEKSD----KEQ-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A  211 (275)
T ss_dssp             HHHHH-HHHHHHHHCHHHHHHHHHHHHHHSC----CCS-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred             HHHHH-HHHHHHhcCHHHHHHHHHHHHhcCC----cch-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence            22222 3344677999999999999887521    111     12347778888899999999999988763321    2


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  708 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  708 (729)
                      |....++..+|.+|...|++++|+.+|++++.+        +|....   ..+.++...|++++|+ ..|
T Consensus       212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~---~~~~~~~~l~~~~~a~-~~~  269 (275)
T 1xnf_A          212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFV---EHRYALLELSLLGQDQ-DDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTCH---HHHHHHHHHHHHHHC-----
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhHH---HHHHHHHHHHHHHhhH-HHH
Confidence            344779999999999999999999999999975        454322   3377888899999998 665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=2.3e-18  Score=169.58  Aligned_cols=209  Identities=15%  Similarity=0.107  Sum_probs=186.1

Q ss_pred             ChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811          470 HPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (729)
Q Consensus       470 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (729)
                      +|.. +.++..+|.++...|++++|+.+|++++..         .+....++..+|.++...|++++|+.+|++++...+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  102 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI---------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS  102 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            4554 889999999999999999999999999998         233467899999999999999999999999999865


Q ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (729)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (729)
                      ..       ..++..+|.++...|++++|+.+|++++.      ....+....++..+|.++...|++++|+.+|++++.
T Consensus       103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            43       57788999999999999999999999887      111233567899999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  708 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  708 (729)
                      .        .|....++..+|.++...|++++|+.+|++++..        .|....++..++.++...|++++|. ..+
T Consensus       170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~  232 (252)
T 2ho1_A          170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG  232 (252)
T ss_dssp             H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence            8        7777889999999999999999999999999864        5677788999999999999999999 999


Q ss_pred             HHHHhhccc
Q 004811          709 ETLLDANSR  717 (729)
Q Consensus       709 ~~al~~~p~  717 (729)
                      +++++.+|+
T Consensus       233 ~~~~~~~p~  241 (252)
T 2ho1_A          233 LQLKRLYPG  241 (252)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHHCCC
Confidence            999999997

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=8.3e-19  Score=175.09  Aligned_cols=259  Identities=13%  Similarity=0.039  Sum_probs=203.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004811          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (729)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (729)
                      ++..+...|++++|+..|+++++..     +..++....+++.+|.++...|++++|+.+|++++..        +|...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~   77 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP   77 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred             eeeccCccchHHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence            3444455689999999999999873     2223345677999999999999999999999999998        68888


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004811          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (729)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (729)
                      .++..+|.++...|++++|+.+|++++.+.+...        .++..+|.++...|++++|+.+|++++...   +..+ 
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~-  145 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--------YAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP-  145 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh-
Confidence            9999999999999999999999999999876543        569999999999999999999999998642   2222 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                        .....++ ++...|++++|+..+++++..        .+..... ..++.++...++.++|+..+++++.....    
T Consensus       146 --~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----  209 (275)
T 1xnf_A          146 --FRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTS----  209 (275)
T ss_dssp             --HHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHH----
T ss_pred             --HHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccccc----
Confidence              2223333 446679999999999999887        2332223 34788888899999999999998766322    


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (729)
                       ..+....++..+|.++...|++++|+.+|++++.+.+..          +...+.++...|++++|+..+
T Consensus       210 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          210 -LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----------FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----------CHHHHHHHHHHHHHHHC----
T ss_pred             -ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHhhHHHH
Confidence             133447889999999999999999999999999875433          123477888889999998877

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=5.5e-18  Score=163.34  Aligned_cols=209  Identities=18%  Similarity=0.128  Sum_probs=185.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .|....++..+|.++...|++++|+.+|++++...         +....++..+|.++...|++++|+.++++++...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   74 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD   74 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            57788999999999999999999999999999983         333678999999999999999999999999998654


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (729)
                      .       ..++..+|.++... |++++|+.+|++++.    . + ..+....++..+|.++...|++++|+.+|+++++
T Consensus        75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~-~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA----D-P-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----S-T-TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----C-c-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4       56788999999999 999999999999987    1 1 1223467899999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQS  707 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~  707 (729)
                      .        .|....++..+|.++...|++++|+.++++++.+.        | .....+..++.++...|+.++|. .+
T Consensus       142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~  204 (225)
T 2vq2_A          142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAY-EY  204 (225)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence            8        78888899999999999999999999999999873        5 56667888999999999999999 99


Q ss_pred             HHHHHhhccc
Q 004811          708 LETLLDANSR  717 (729)
Q Consensus       708 l~~al~~~p~  717 (729)
                      ++.++..+|+
T Consensus       205 ~~~~~~~~p~  214 (225)
T 2vq2_A          205 EAQLQANFPY  214 (225)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHhCCC
Confidence            9999999987

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.81  E-value=4.2e-19  Score=173.66  Aligned_cols=205  Identities=17%  Similarity=0.157  Sum_probs=165.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (729)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (729)
                      ..+..+..+|.++...|++++|+.+|++++..         .+....++..+|.++...|++++|+.++++++...+.. 
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-   90 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-   90 (243)
T ss_dssp             ---------------------CCTTHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-
Confidence            45678899999999999999999999999986         33346789999999999999999999999999886543 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (729)
                            ..++..+|.++...|++++|+.+|+++++..+        ....++..+|.++...|++++|+.+|++++..  
T Consensus        91 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  154 (243)
T 2q7f_A           91 ------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--  154 (243)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             ------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence                  57888999999999999999999999998631        12467899999999999999999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (729)
                            .|....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|. ..|+++
T Consensus       155 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~  219 (243)
T 2q7f_A          155 ------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKAL-EMLDKA  219 (243)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHH-HHHHHH
T ss_pred             ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence                  7888889999999999999999999999999987        5777889999999999999999999 999999


Q ss_pred             Hhhccc
Q 004811          712 LDANSR  717 (729)
Q Consensus       712 l~~~p~  717 (729)
                      ++++|+
T Consensus       220 ~~~~p~  225 (243)
T 2q7f_A          220 IDIQPD  225 (243)
T ss_dssp             HHHCTT
T ss_pred             HccCcc
Confidence            999998

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=4.9e-18  Score=167.16  Aligned_cols=203  Identities=12%  Similarity=0.048  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      .+.++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...      
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------  101 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------  101 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------
Confidence            3788999999999999999999999999988        67778899999999999999999999999999982      


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (729)
                         +....++..+|.++...|++++|+.++++++.     .+..+....++..+|.++...|++++|+.+|++++...  
T Consensus       102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--  171 (252)
T 2ho1_A          102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--  171 (252)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence               23367889999999999999999999999987     12334456788899999999999999999999998862  


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                            +....++..+|.++...|++++|+.+|++++..        .|....++..++.++...|++++|..+++++++
T Consensus       172 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          172 ------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             ------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                  113567889999999999999999999999887        677778899999999999999999999999998


Q ss_pred             H
Q 004811          671 I  671 (729)
Q Consensus       671 ~  671 (729)
                      +
T Consensus       238 ~  238 (252)
T 2ho1_A          238 L  238 (252)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=1.7e-17  Score=159.85  Aligned_cols=207  Identities=14%  Similarity=0.105  Sum_probs=180.0

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      ..+....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.+|++++...  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--   72 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--   72 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence            35667788999999999999999999999999998        67778899999999999999999999999999982  


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (729)
                             +....++..+|.++... |++++|+.++++++. .    +..+....++..+|.++...|++++|+.+|++++
T Consensus        73 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  140 (225)
T 2vq2_A           73 -------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL  140 (225)
T ss_dssp             -------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   33466789999999999 999999999999987 1    2234456788999999999999999999999998


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHH
Q 004811          586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEI  664 (729)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~  664 (729)
                      +..+        ....++..+|.++...|++++|+.+|++++..        .| ....++..++.++...|++++|..+
T Consensus       141 ~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~  204 (225)
T 2vq2_A          141 AAQP--------QFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEY  204 (225)
T ss_dssp             HHST--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCC--------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence            8621        13568899999999999999999999999998        56 6677888999999999999999999


Q ss_pred             HHHHHHH
Q 004811          665 LEFVVGI  671 (729)
Q Consensus       665 ~~~al~~  671 (729)
                      ++.++..
T Consensus       205 ~~~~~~~  211 (225)
T 2vq2_A          205 EAQLQAN  211 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=1.4e-18  Score=187.58  Aligned_cols=204  Identities=15%  Similarity=0.135  Sum_probs=183.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          427 QDAEVASVDCSIGDTYLSLSRY-DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      ..+..+.+++.+|.++...|++ ++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++++  
T Consensus        97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--  166 (474)
T 4abn_A           97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--  166 (474)
T ss_dssp             TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--
T ss_pred             cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence            4556778999999999999999 9999999999998        7888999999999999999999999999999988  


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc-----
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML-----  571 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-----  571 (729)
                             .|. ..++..+|.++...         |++++|+.+|++++++.+..       ..++..+|.+|...     
T Consensus       167 -------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          167 -------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             -------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHTT
T ss_pred             -------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhhc
Confidence                   223 47899999999999         99999999999999997665       57889999999999     


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004811          572 ---GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (729)
Q Consensus       572 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  648 (729)
                         |++++|+.+|++++.+.+.     ......++..+|.+|...|++++|+.+|++++++        +|+...++..+
T Consensus       232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l  298 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQRE  298 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence               9999999999999997210     0135789999999999999999999999999999        89999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHH
Q 004811          649 AGTYDAIGRLDDAIEILEFV  668 (729)
Q Consensus       649 a~~~~~~g~~~~A~~~~~~a  668 (729)
                      +.++..+|++++|+..+.+.
T Consensus       299 ~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          299 QQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            99999999999999877654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.80  E-value=1.7e-17  Score=168.46  Aligned_cols=245  Identities=15%  Similarity=0.165  Sum_probs=194.0

Q ss_pred             hCCHHHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          405 KGDHEAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (729)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (729)
                      .|++++|.++++++......     .++.......+...|.+|...|++++|+.+|.+++.+.....  +....+.++.+
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~   81 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ   81 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence            46677788888777765442     223344455666778899999999999999999999988764  34566889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (729)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (729)
                      +|.+|..+|++++|+.+|++++.++...   .+....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~  156 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE  156 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence            9999999999999999999999998763   2355668899999999999 99999999999999999875 55455678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (729)
                      ++.++|.+|..+|++++|+.+|++++.+.+....  ......++..+|.++..+|++++|+.+|++++ +.... .  ..
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~-~--~~  230 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF-S--GS  230 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS-T--TS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC-C--CC
Confidence            8999999999999999999999999999877544  23345688999999999999999999999999 61110 0  11


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHH
Q 004811          640 DTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      .....+..++..+ ..|+.+.+..
T Consensus       231 ~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          231 EDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhcCHHHHHH
Confidence            2233556666666 5677665555

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=3.9e-18  Score=159.02  Aligned_cols=167  Identities=17%  Similarity=0.294  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (729)
                      .+.+|+++|.+|...|++++|+.+|++++++         .|....++..+|.+|...|++++|+..+.+++...+..  
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence            4678999999999999999999999999999         45557889999999999999999999999999876554  


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                           ..++..+|.++...++++.|...+.+++.+.        +....++..+|.++...|++++|+..|++++++   
T Consensus        73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---  136 (184)
T 3vtx_A           73 -----AEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---  136 (184)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence                 5778899999999999999999999998862        223578899999999999999999999999999   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                           +|....++..+|.+|..+|++++|+.+|++++++
T Consensus       137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                 8999999999999999999999999999999986

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=9.8e-19  Score=188.73  Aligned_cols=217  Identities=16%  Similarity=0.153  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 004811          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL-RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES  529 (729)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  529 (729)
                      ....+++++..+..... ..+..+.+++.+|.++...|++ ++|+.+|++++++         .|....++..+|.+|..
T Consensus        80 ~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           80 VQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------EPELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHH
Confidence            33344444444443322 2567889999999999999999 9999999999999         44457789999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 004811          530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (729)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (729)
                      .|++++|+.+|++++++.+.        ..++..+|.++...         |++++|+.+|++++++.        +...
T Consensus       150 ~g~~~~A~~~~~~al~~~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~  213 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTHCKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDG  213 (474)
T ss_dssp             HTCHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred             cCCHHHHHHHHHHHHhhCCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCH
Confidence            99999999999999987422        37889999999999         99999999999999872        2246


Q ss_pred             HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004811          601 VALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHP---DTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (729)
Q Consensus       601 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (729)
                      .+|..+|.+|...        |++++|+.+|++++++        +|   ....+++++|.+|..+|++++|+.+|++++
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7899999999999        9999999999999999        78   889999999999999999999999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (729)
                      ++        +|+...++..++.++...|++++|+ ..+.+
T Consensus       286 ~l--------~p~~~~a~~~l~~~~~~lg~~~eAi-~~~~~  317 (474)
T 4abn_A          286 AL--------DPAWPEPQQREQQLLEFLSRLTSLL-ESKGK  317 (474)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHHHHHHHHH-HHTTT
T ss_pred             Hh--------CCCCHHHHHHHHHHHHHHHHHHHHH-HHhcc
Confidence            87        6888899999999999999999999 75543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.80  E-value=1.7e-18  Score=193.97  Aligned_cols=173  Identities=21%  Similarity=0.304  Sum_probs=162.3

Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      .|..+.++++||.+|..+|++++|+.+|++++++.++.       ..++.++|.+|..+|++++|+.+|++++++.    
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----   73 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRIS----   73 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence            56778999999999999999999999999999997665       6889999999999999999999999999972    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                          +..+.++.++|.++..+|++++|+++|++++++        +|+...++.+||.+|..+|++++|+..|++++++ 
T Consensus        74 ----P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-  140 (723)
T 4gyw_A           74 ----PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-  140 (723)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence                235689999999999999999999999999999        8999999999999999999999999999999998 


Q ss_pred             HHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       673 ~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                             +|+...++.+||.+|...|++++|. +.+++++++.|+
T Consensus       141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~  177 (723)
T 4gyw_A          141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVAD  177 (723)
T ss_dssp             -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHH
T ss_pred             -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChh
Confidence                   6889999999999999999999999 999999999987

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.79  E-value=2e-17  Score=167.99  Aligned_cols=247  Identities=15%  Similarity=0.099  Sum_probs=198.1

Q ss_pred             hcCHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004811          363 ALQFSEAQKFCQMALDIHKDNG---SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (729)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~---~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (729)
                      .|++++|..+++++.+..+...   ..+....+..+...|.+|...|++++|+.+|.+++.+....++....+.++.++|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5778888888888887766421   1222333455666788999999999999999999999988888888899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004811          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (729)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (729)
                      .+|..+|++++|+.+|++++.++....  +....+.++.++|.+|.. |++++|+.+|++++.+....   .+......+
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~~~~~~~~  157 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ERLRQAAEL  157 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CChhHHHHH
Confidence            999999999999999999999987654  234567899999999999 99999999999999998763   234556789


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (729)
                      +.++|.+|..+|++++|+.+|++++.+.+.. +.......++..+|.++..+|++++|+.+|++++ +.+....   ...
T Consensus       158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~---~~e  232 (307)
T 2ifu_A          158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG---SED  232 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT---SHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC---CHH
Confidence            9999999999999999999999999999877 3334455678899999999999999999999998 5432221   223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Q 004811          600 GVALNQMGLACVQRYSINEAVE  621 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~  621 (729)
                      ...+..++..+ ..|+.+.+..
T Consensus       233 ~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          233 CAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHH-HhcCHHHHHH
Confidence            44566666655 5677655544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=8.4e-18  Score=188.28  Aligned_cols=174  Identities=21%  Similarity=0.287  Sum_probs=161.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .|..+.++.+||.+|..+|++++|+.+|++++++         .|....++.++|.+|..+|++++|+.+|++++++.++
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~   75 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT   75 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            6889999999999999999999999999999999         4455789999999999999999999999999999776


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .       +.+++++|.+|..+|++++|+.+|++++++.        +....++.++|.+|..+|++++|+.+|++++++
T Consensus        76 ~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           76 F-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5       6889999999999999999999999999872        235689999999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                              +|+...++.+||.+|..+|++++|++.|++++++....
T Consensus       141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence                    89999999999999999999999999999999987654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.76  E-value=9.2e-17  Score=159.01  Aligned_cols=224  Identities=15%  Similarity=0.144  Sum_probs=180.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .+.....++.+|..++..|++++|+..|++++..     .++++....+++.+|.+|...|++++|+..|++++..... 
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-   84 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-   84 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence            4455678899999999999999999999999987     2233444899999999999999999999999999999432 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (729)
                           .+....+++.+|.++..        .|++++|+..|++++...|....       +              ..+..
T Consensus        85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~--------------~~a~~  138 (261)
T 3qky_A           85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-------V--------------DDATQ  138 (261)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-------H--------------HHHHH
T ss_pred             -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-------H--------------HHHHH
Confidence                 44567889999999999        99999999999999998776521       1              11111


Q ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----
Q 004811          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI----  655 (729)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----  655 (729)
                      .+.....           .....+..+|.+|...|++++|+..|+++++.     .|+++....+++.+|.+|..+    
T Consensus       139 ~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~  202 (261)
T 3qky_A          139 KIRELRA-----------KLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS  202 (261)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence            1111111           13345788999999999999999999999998     222333778999999999977    


Q ss_pred             ------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          656 ------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       656 ------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                            |++++|+..|+++++..     |++|....+...++.++...++++++.
T Consensus       203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                  89999999999999875     777888889999999999888887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=2.2e-17  Score=159.79  Aligned_cols=188  Identities=16%  Similarity=0.153  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      ..++.+|.++...|++++|+.+|++++.+        .| ....+++.+|.++...|++++|+.+|++++..        
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------   71 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------   71 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence            67889999999999999999999999998        44 55678888999999999999999999999987        


Q ss_pred             ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                       .|....++..+|.++..+|++++|+.+|++++++.+........++.++..+|.++...|++++|+.+|++++++    
T Consensus        72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----  146 (228)
T 4i17_A           72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----  146 (228)
T ss_dssp             -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence             445678899999999999999999999999999876552222234467899999999999999999999999885    


Q ss_pred             CCCCChH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811          592 GERKSAF--FGVALNQMGLACVQRYSI---------------------------NEAVELFEEARSILEQECGPYHPDTL  642 (729)
Q Consensus       592 ~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~  642 (729)
                          .+.  ...++..+|.+|...|+.                           ++|+.+|++++++        +|+..
T Consensus       147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~  214 (228)
T 4i17_A          147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT  214 (228)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence                234  567899999999988888                           8999999999998        78888


Q ss_pred             HHHHHHHHHHH
Q 004811          643 GVYSNLAGTYD  653 (729)
Q Consensus       643 ~~~~~la~~~~  653 (729)
                      .+...++.+..
T Consensus       215 ~~~~~l~~i~~  225 (228)
T 4i17_A          215 EIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            78887777654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=2.2e-16  Score=160.46  Aligned_cols=224  Identities=14%  Similarity=0.085  Sum_probs=187.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHhcCCCCCCh
Q 004811          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-------TGKL-------RESKSYCENALR-IYEKPVPGVPP  513 (729)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~  513 (729)
                      ++|+..|++++..        .|....+|+.+|.++..       .|++       ++|+..|++++. +         .
T Consensus        33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------~   95 (308)
T 2ond_A           33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------L   95 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---------T
T ss_pred             HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---------C
Confidence            7899999999998        68889999999999874       5886       899999999998 5         3


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      |....+|..+|.++...|++++|+..|++++++.+..+      ..+|..+|.++...|++++|+..|+++++..+    
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----  165 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----  165 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----
Confidence            44567899999999999999999999999998654331      12788999999999999999999999987521    


Q ss_pred             CCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          594 RKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                       .   ...++...+.+... .|++++|+.+|+++++.        +|+...++..++.++..+|++++|+.+|++++...
T Consensus       166 -~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  233 (308)
T 2ond_A          166 -T---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             -C---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             -C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence             1   13445555555433 79999999999999998        78888899999999999999999999999999731


Q ss_pred             HHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          673 EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       673 ~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                           ...| .....+..++.++...|+.++|. ..++++++.+|+
T Consensus       234 -----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~  273 (308)
T 2ond_A          234 -----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFRE  273 (308)
T ss_dssp             -----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTT
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHccc
Confidence                 1134 36778889999999999999999 999999999997

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.73  E-value=1e-16  Score=155.07  Aligned_cols=190  Identities=11%  Similarity=0.111  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      +..++.+|.++...|++++|+.+|++++.+...        ....++..+|.++...|++++|+.+|++++...+..   
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---   75 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---   75 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---
Confidence            478999999999999999999999999999421        123567789999999999999999999999775443   


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (729)
                          ..++..+|.+|..+|++++|+.+|++++++.+..... ....+.++..+|.++...|++++|+.+|++++++    
T Consensus        76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----  146 (228)
T 4i17_A           76 ----ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI-EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----  146 (228)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             ----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence                6789999999999999999999999999873210000 0113367999999999999999999999999998    


Q ss_pred             cCCCChh--HHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHHHHHHHcCCCChhHH
Q 004811          634 CGPYHPD--TLGVYSNLAGTYDAIGRL---------------------------DDAIEILEFVVGIREEKLGTANPDVD  684 (729)
Q Consensus       634 ~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~g~~~p~~~  684 (729)
                          +|+  ...++..+|.+|..+|+.                           ++|+.+|++++++        +|+..
T Consensus       147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~  214 (228)
T 4i17_A          147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT  214 (228)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence                899  889999999999999988                           8899999999987        57777


Q ss_pred             HHHHHHHHHHH
Q 004811          685 DEKRRLAELLK  695 (729)
Q Consensus       685 ~~~~~La~~~~  695 (729)
                      .+...|+.+..
T Consensus       215 ~~~~~l~~i~~  225 (228)
T 4i17_A          215 EIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            77777776643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.72  E-value=6.4e-16  Score=152.91  Aligned_cols=223  Identities=15%  Similarity=0.149  Sum_probs=177.4

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (729)
                      +..+..++.+|..++..|+|++|+..|++++...     +.++ ....+++.+|.+|..+|++++|+..|++++...   
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---   82 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIY---   82 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence            3446779999999999999999999999999886     3332 124569999999999999999999999999983   


Q ss_pred             hCCCCchHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 004811          342 LGETDPRVGETCRYLAEAHVQ--------ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (729)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~  413 (729)
                        ++++....+++.+|.++..        .|++++|+..|++++...|.....        ...+..             
T Consensus        83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~~a~~~-------------  139 (261)
T 3qky_A           83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--------DDATQK-------------  139 (261)
T ss_dssp             --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--------HHHHHH-------------
T ss_pred             --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--------HHHHHH-------------
Confidence              2256788999999999999        999999999999999998765421        111111             


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc------
Q 004811          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT------  487 (729)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------  487 (729)
                       +...         .......++.+|.+|...|++++|+..|++++...     ++.+....++..+|.+|..+      
T Consensus       140 -~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~  204 (261)
T 3qky_A          140 -IREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVR  204 (261)
T ss_dssp             -HHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred             -HHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchh
Confidence             1111         11223457889999999999999999999999872     22344788999999999977      


Q ss_pred             ----CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH
Q 004811          488 ----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (729)
Q Consensus       488 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (729)
                          |++++|+..|+++++...      +++....+...++.++...++++++.
T Consensus       205 ~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          205 ARQPERYRRAVELYERLLQIFP------DSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hcccchHHHHHHHHHHHHHHCC------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                999999999999999943      35566778888899988888877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1e-14  Score=156.06  Aligned_cols=241  Identities=17%  Similarity=0.173  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004811          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS---------LEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (729)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  422 (729)
                      +....|..+...|+|++|++.|.++++..+...+...         .....++..+|.+|...|++++|++++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3455677888999999999999999998776554211         2234568899999999999999999999999888


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (729)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (729)
                      ...+.......+...++.++...|++++|+.++++++.......  +.+....++..+|.+|...|+|.+|+.++++++.
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            77766666667788899999999999999999999999988765  3566788999999999999999999999999999


Q ss_pred             HHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004811          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (729)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (729)
                      .....   .+.+..+.++..++.+|...|++++|..++++++.+.+.........+.++..+|.++...|+|.+|..+|.
T Consensus       164 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          164 EFKKL---DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             HHTTS---SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHHhc---ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            88773   456678899999999999999999999999999999988855555667888999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCh
Q 004811          583 NAISKLRAIGERKSA  597 (729)
Q Consensus       583 ~al~~~~~~~~~~~~  597 (729)
                      +++............
T Consensus       241 ~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          241 ESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHTTTSSCH
T ss_pred             HHHHHhhhhhhhhhH
Confidence            999998877665544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.70  E-value=3.3e-13  Score=149.19  Aligned_cols=443  Identities=8%  Similarity=-0.041  Sum_probs=296.0

Q ss_pred             ccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCC---hHHHH
Q 004811          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ---YNEAI  285 (729)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~  285 (729)
                      .+......+|.....|..++......+. +..+...|++++..+         |.....|...+......++   ++.+.
T Consensus        54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~  123 (679)
T 4e6h_A           54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIE  123 (679)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred             HHHHHHHHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence            3455556789999999999999888886 999999999999987         3345567777777788888   99999


Q ss_pred             HHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCH----HHHH----HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004811          286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL----ENSL----MCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (729)
Q Consensus       286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (729)
                      .+|++++.....   +.+.    .+|..........++.    +++.    ..|++|+..    .|.-++....+|....
T Consensus       124 ~lfeRal~~~~~---~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi  192 (679)
T 4e6h_A          124 PVLARCLSKELG---NNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYL  192 (679)
T ss_dssp             HHHHHHTCSSSC---CCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHH
T ss_pred             HHHHHHHHhcCC---CCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHH
Confidence            999999987510   1221    2354444444444443    3444    566666554    3441234444554444


Q ss_pred             HHHH---------HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------------HHHhCCHHHHHHHH
Q 004811          358 EAHV---------QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-------------CETKGDHEAALEHL  415 (729)
Q Consensus       358 ~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~-------------~~~~g~~~~A~~~~  415 (729)
                      ....         .+++++.+..+|++++.+ |..    ..  ...|......             -....+|..|...+
T Consensus       193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~----~~--~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~  265 (679)
T 4e6h_A          193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMD----CL--ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLY  265 (679)
T ss_dssp             HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCS----SH--HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccH----HH--HHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHH
Confidence            4322         345678888999988853 111    11  1111111110             11122344444444


Q ss_pred             HHHHHHHHhCCC--------------------ChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCC
Q 004811          416 VLASMTMIANDQ--------------------DAEVASVDCSIGDTYLSLS-------RYDEAGFAYQKALTAFKTNKGE  468 (729)
Q Consensus       416 ~~al~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~  468 (729)
                      ............                    .......|......-...+       ........|++++..       
T Consensus       266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-------  338 (679)
T 4e6h_A          266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-------  338 (679)
T ss_dssp             HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-------
Confidence            332221111110                    1122334444333322221       123456789999987       


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          469 NHPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                       .|....+|...+..+...|+.++|. ..|++|+....         .....+..++.+....|++++|...|++++...
T Consensus       339 -~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P---------~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          339 -VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---------NSAVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             -TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence             6888999999999999999999997 99999998732         235668889999999999999999999999875


Q ss_pred             Hh--------CCCC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 004811          548 ND--------APGQ-------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ  612 (729)
Q Consensus       548 ~~--------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  612 (729)
                      +.        .+..       ......+|...+.+....|+.+.|...|.+|++..   ...    ...+|...|.+...
T Consensus       409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~----~~~lyi~~A~lE~~  481 (679)
T 4e6h_A          409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLV----TPDIYLENAYIEYH  481 (679)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGS----CTHHHHHHHHHHHT
T ss_pred             HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC----ChHHHHHHHHHHHH
Confidence            31        1110       00234577888888888999999999999998741   111    12345566666666


Q ss_pred             cC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004811          613 RY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA  691 (729)
Q Consensus       613 ~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La  691 (729)
                      .+ +++.|..+|+.+++.        .|+....+...+......|+.+.|..+|++++...     +........+..+.
T Consensus       482 ~~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~  548 (679)
T 4e6h_A          482 ISKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVI  548 (679)
T ss_dssp             TTSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Confidence            65 499999999999998        45556667788888889999999999999999652     11125667888888


Q ss_pred             HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..-...|+.+.+. ..++++++..|+
T Consensus       549 ~fE~~~G~~~~~~-~v~~R~~~~~P~  573 (679)
T 4e6h_A          549 FFESKVGSLNSVR-TLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHTCCSHHHH-HHHHHHHHHSTT
T ss_pred             HHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            8899999999999 999999999997

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=4.3e-15  Score=150.81  Aligned_cols=227  Identities=9%  Similarity=0.048  Sum_probs=185.9

Q ss_pred             HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHHHHhCCCC
Q 004811          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM-------LGQL-------ENSLMCYTTGLE-VQKQVLGETD  346 (729)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~  346 (729)
                      ++|+..|++++...     +.++    .+|+.+|.++..       .|++       ++|+..|++|+. +        +
T Consensus        33 ~~a~~~~~~al~~~-----p~~~----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~   95 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-----GHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------L   95 (308)
T ss_dssp             HHHHHHHHHHHHHH-----TTCH----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------T
T ss_pred             HHHHHHHHHHHHHc-----CCCH----HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------C
Confidence            78999999999876     4443    348888888764       5885       899999999998 6        6


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      |....+|..+|.++...|++++|...|++++++.+...       ..+|..+|.++...|++++|+..|++++..     
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----  163 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARED-----  163 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc-------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence            88889999999999999999999999999998765432       126899999999999999999999999753     


Q ss_pred             CChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          427 QDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                       .|....++...+.+... .|++++|+.+|+++++.        .|....+|..++.++...|++++|+.+|++++....
T Consensus       164 -~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~  234 (308)
T 2ond_A          164 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             -TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence             12223455555555433 79999999999999998        577789999999999999999999999999998511


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (729)
                      -     ++.....+|..++.++...|++++|..+++++++..|+..
T Consensus       235 l-----~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          235 L-----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             S-----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             C-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence            0     1123466788899999999999999999999999988753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.68  E-value=1.3e-17  Score=170.66  Aligned_cols=335  Identities=15%  Similarity=0.107  Sum_probs=161.6

Q ss_pred             HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004811          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (729)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (729)
                      .+....|++++|.+++++.-          ++    .+|..||.++...|++++|+..|.++             .....
T Consensus        11 ~ll~~~~~ld~A~~fae~~~----------~~----~vWs~La~A~l~~g~~~eAIdsfika-------------~D~~~   63 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERCN----------EP----AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSS   63 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhCC----------Ch----HHHHHHHHHHHHcCCHHHHHHHHHcC-------------CCHHH
Confidence            33457788999999998871          11    25999999999999999999999763             12347


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004811          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA  432 (729)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  432 (729)
                      +..++..+...|+|++|+.+++.+++..+.         +.+...++.+|.+.|++.++.+++.           .|.. 
T Consensus        64 y~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~-  122 (449)
T 1b89_A           64 YMEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFIN-----------GPNN-  122 (449)
T ss_dssp             ------------------------------------------------------CHHHHTTTTT-----------CC---
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHc-----------CCcH-
Confidence            788888999999999999999988875322         2346778999999999999988774           1222 


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      .++..+|..+...|+|++|..+|.++                ..|..+|.++.++|++++|++.++++.           
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----------  175 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN-----------  175 (449)
T ss_dssp             --------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----------
Confidence            38999999999999999999999865                357889999999999999999999982           


Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                         ...+|..++.++...|+++.|..+..... ..          +.-...+..+|.+.|++++|+.++++++.+-    
T Consensus       176 ---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~----------ad~l~~lv~~Yek~G~~eEai~lLe~aL~le----  237 (449)
T 1b89_A          176 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VH----------ADELEELINYYQDRGYFEELITMLEAALGLE----  237 (449)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----
T ss_pred             ---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC----------HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc----
Confidence               14678889999999999999966655411 11          1223468889999999999999999998752    


Q ss_pred             CCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHHHHcCChHHHHHHH
Q 004811          593 ERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSILEQECGPYHP-----DTLGVYSNLAGTYDAIGRLDDAIEIL  665 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~  665 (729)
                          .....++..+|.+|.+  .++..++++.|...+.+        .+     .....|..+..+|...++++.|+...
T Consensus       238 ----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--------~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          238 ----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             ----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--------HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence                1134677778877765  45677788877776666        33     44557889999999999999998766


Q ss_pred             HHHHH------HHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH--hhccc
Q 004811          666 EFVVG------IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL--DANSR  717 (729)
Q Consensus       666 ~~al~------~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al--~~~p~  717 (729)
                      -+...      .+..+.  ..+.+.+.++.....|.  +....++ ..|..++  .+|++
T Consensus       306 ~~h~~~a~~~~~f~~~~--~kv~n~elyYkai~fyl--~~~p~~l-~~ll~~l~~~ld~~  360 (449)
T 1b89_A          306 MNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYL--EFKPLLL-NDLLMVLSPRLDHT  360 (449)
T ss_dssp             HHSTTTTCCHHHHHHHH--HHCSSTHHHHHHHHHHH--HHCGGGH-HHHHHHHGGGCCHH
T ss_pred             HhCChhhhhhHHHHHHH--hchhHHHHHHHHHHHHH--hcCHHHH-HHHHHHHHhccCcH
Confidence            54321      011110  03455778888887777  4555667 7777777  56655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.67  E-value=2.1e-15  Score=140.09  Aligned_cols=172  Identities=17%  Similarity=0.238  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      ......+..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.++++++...     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----   72 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLADA-----   72 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Confidence            3456788999999999999999999999988764432       5788899999999999999999999999862     


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                         +....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++..  
T Consensus        73 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  139 (186)
T 3as5_A           73 ---PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--  139 (186)
T ss_dssp             ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--
Confidence               123578899999999999999999999999998        7888889999999999999999999999999987  


Q ss_pred             HHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                            .|....++..+|.++...|++++|. ..++++++.+|+
T Consensus       140 ------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~  176 (186)
T 3as5_A          140 ------RPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEG  176 (186)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHC
T ss_pred             ------CccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence                  4677889999999999999999999 999999999997

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.66  E-value=8.1e-16  Score=157.49  Aligned_cols=379  Identities=12%  Similarity=0.085  Sum_probs=180.1

Q ss_pred             ccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCC
Q 004811          201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ  280 (729)
Q Consensus       201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  280 (729)
                      ++...+.+.+...  .+|   .+|..+|..+...|+ +++|++.|.++-           +   ...+..++..+...|+
T Consensus        17 ~~ld~A~~fae~~--~~~---~vWs~La~A~l~~g~-~~eAIdsfika~-----------D---~~~y~~V~~~ae~~g~   76 (449)
T 1b89_A           17 GNLDRAYEFAERC--NEP---AVWSQLAKAQLQKGM-VKEAIDSYIKAD-----------D---PSSYMEVVQAANTSGN   76 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhC--CCh---HHHHHHHHHHHHcCC-HHHHHHHHHcCC-----------C---HHHHHHHHHHHHhCCC
Confidence            3344444444444  333   489999999999997 999999997642           1   3357778889999999


Q ss_pred             hHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 004811          281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH  360 (729)
Q Consensus       281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  360 (729)
                      |++|+.+++.+++..     ++     ..+...++.+|.++|++.++..+++.             |.. .+|..+|..+
T Consensus        77 ~EeAi~yl~~ark~~-----~~-----~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~  132 (449)
T 1b89_A           77 WEELVKYLQMARKKA-----RE-----SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRC  132 (449)
T ss_dssp             ------------------------------------------CHHHHTTTTTC-------------C-------------
T ss_pred             HHHHHHHHHHHHHhC-----cc-----chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHH
Confidence            999999999888642     11     22367799999999999998877742             333 4999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004811          361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (729)
Q Consensus       361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (729)
                      ...|.|++|..+|.++        .        .+..+|.++..+|++++|++.++++.           ...+|..+..
T Consensus       133 ~~~g~yeeA~~~Y~~a--------~--------n~~~LA~~L~~Lg~yq~AVea~~KA~-----------~~~~Wk~v~~  185 (449)
T 1b89_A          133 YDEKMYDAAKLLYNNV--------S--------NFGRLASTLVHLGEYQAAVDGARKAN-----------STRTWKEVCF  185 (449)
T ss_dssp             ----CTTTHHHHHHHT--------T--------CHHHHHHHHHTTTCHHHHHHHHHHHT-----------CHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHh--------h--------hHHHHHHHHHHhccHHHHHHHHHHcC-----------CchhHHHHHH
Confidence            9999999999999977        1        28899999999999999999999881           2467888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004811          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (729)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (729)
                      ++...|+++.|..+..... .        +|..   ...+..+|...|++++|+.++++++.+-         +....++
T Consensus       186 aCv~~~ef~lA~~~~l~L~-~--------~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le---------~ah~~~f  244 (449)
T 1b89_A          186 ACVDGKEFRLAQMCGLHIV-V--------HADE---LEELINYYQDRGYFEELITMLEAALGLE---------RAHMGMF  244 (449)
T ss_dssp             HHHHTTCHHHHHHTTTTTT-T--------CHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST---------TCCHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHH-h--------CHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc---------HHHHHHH
Confidence            9999999999977665422 2        5544   3368899999999999999999999873         2335667


Q ss_pred             HHHHHHHHh--cchHHHHHHHHHHHHHHHH-----hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Q 004811          521 TDVSSIYES--MNELEQAIKLLQKALKIYN-----DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK------  587 (729)
Q Consensus       521 ~~la~~~~~--~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  587 (729)
                      ..||.+|.+  .++..+.++.|...+.+.+     ..       +..|..+..+|...++|+.|+...-+....      
T Consensus       245 tel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~-------~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~  317 (449)
T 1b89_A          245 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ-------AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ  317 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT-------TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH-------HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHH
Confidence            777887765  5678888888876655544     22       246778999999999999998755433210      


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004811          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF  667 (729)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  667 (729)
                      +..+-..  .....+++.....|.  +....++..+..++.-   .  - ++.      .....+...|+..-...+++.
T Consensus       318 f~~~~~k--v~n~elyYkai~fyl--~~~p~~l~~ll~~l~~---~--l-d~~------r~v~~~~~~~~l~l~~~yl~~  381 (449)
T 1b89_A          318 FKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSP---R--L-DHT------RAVNYFSKVKQLPLVKPYLRS  381 (449)
T ss_dssp             HHHHHHH--CSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG---G--C-CHH------HHHHHHHHTTCTTTTHHHHHH
T ss_pred             HHHHHhc--hhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh---c--c-CcH------HHHHHHHHcCCcHHHHHHHHH
Confidence            0000000  001234444444444  2334445444444411   0  0 221      223455667777777766654


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       668 al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                      +..          .+...+-..|-.+|....+++.=.
T Consensus       382 v~~----------~n~~~vnealn~l~ieeed~~~lr  408 (449)
T 1b89_A          382 VQN----------HNNKSVNESLNNLFITEEDYQALR  408 (449)
T ss_dssp             HHT----------TCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHH----------hhHHHHHHHHHHHHHhhhhHHHHH
Confidence            432          233444555667788888876543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.66  E-value=3.1e-15  Score=159.21  Aligned_cols=150  Identities=10%  Similarity=-0.052  Sum_probs=142.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004811          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (729)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (729)
                      .+..+..+|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++++.++.+|++||+.+.
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            34456788999999999999999999988888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      .+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+......|+.++..++.+++|. ..|..+.+.
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~~~~  464 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 888877653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.66  E-value=1.4e-14  Score=137.05  Aligned_cols=194  Identities=12%  Similarity=0.148  Sum_probs=156.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (729)
                      +..|++++|...++....        +......++..+|.++...|++++|+.++++++.+++..   .+.+....++..
T Consensus         3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~   71 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GDHTAEHRALHQ   71 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHH
Confidence            467899999885544322        244678999999999999999999999999999998874   357778899999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 004811          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (729)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (729)
                      +|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+.  ....+.+
T Consensus        72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~  149 (203)
T 3gw4_A           72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACA  149 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHH
Confidence            99999999999999999999999998763244467788999999999999999999999999998876554  3445677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (729)
                      +..+|.++...|++++|+.++++++.+.+....  ......++..++.+
T Consensus       150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence            899999999999999999999999999877543  23333444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.65  E-value=1.5e-14  Score=136.74  Aligned_cols=195  Identities=13%  Similarity=0.149  Sum_probs=159.0

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004811          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (729)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (729)
                      ++..|++++|...++....      ++  ...+.++..+|.++...|++++|+.++++++.+....++.+....++..+|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~------~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   73 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA------HP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG   73 (203)
T ss_dssp             -----CHHHHHHHHHHHHT------ST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC------Ch--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            3567899999995544321      11  234678999999999999999999999999999999888899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004811          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (729)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (729)
                      .++...|++++|+.++++++.+++... .+......++..+|.++...|++++|+.++++++.+.+..   .+......+
T Consensus        74 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~  149 (203)
T 3gw4_A           74 MVERMAGNWDAARRCFLEERELLASLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA---DDQVAIACA  149 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---cchHHHHHH
Confidence            999999999999999999999988543 1233678899999999999999999999999999997763   345566778


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (729)
                      +..+|.++...|++++|+.++++++++.... +.....+.++..++.+
T Consensus       150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAEL-EDSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHhcccch
Confidence            8999999999999999999999999999887 5554455555554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.65  E-value=1.4e-15  Score=171.41  Aligned_cols=200  Identities=10%  Similarity=-0.066  Sum_probs=165.3

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (729)
                      ...|++++|+..|++++..........+|....++..+|.++...|++++|+..|++++++         .|....+++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~  472 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---------VGWRWRLVWY  472 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------HCCCHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------CcchHHHHHH
Confidence            7889999999999999821111111126888899999999999999999999999999999         4445788999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 004811          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (729)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (729)
                      +|.++...|++++|+..|++++++.+..       ..++.++|.++...|++++ +.+|++++++.        +....+
T Consensus       473 lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~~a  536 (681)
T 2pzi_A          473 RAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVISA  536 (681)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchHHH
Confidence            9999999999999999999999998766       4788999999999999999 99999999872        224578


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIREEK  675 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  675 (729)
                      ++++|.++..+|++++|+..|++++++        +|+...++.++|.++...++.++| ...+++++......
T Consensus       537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          537 AFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            999999999999999999999999998        899999999999999888876666 66777777666544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=7.5e-16  Score=137.80  Aligned_cols=147  Identities=16%  Similarity=0.114  Sum_probs=127.2

Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 004811          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (729)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (729)
                      .||.++...|++++|+..+++++...+..       ...++.+|.+|...|++++|+.+|++++++.        +....
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--------p~~~~   66 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--------ERDPK   66 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHH
Confidence            47889999999999999999998877765       4567899999999999999999999999972        23468


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHcCCCC
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI-LEFVVGIREEKLGTAN  680 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~g~~~  680 (729)
                      +|..+|.+|...|++++|+.+|++++++        +|....++..+|.+|...|++++|... +++++++        +
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~  130 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F  130 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence            9999999999999999999999999999        899999999999999999999887765 5899988        6


Q ss_pred             hhHHHHHHHHHHHHHHhCC
Q 004811          681 PDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       681 p~~~~~~~~La~~~~~~g~  699 (729)
                      |....++..++.++...|+
T Consensus       131 P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHTCCC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            8888888889999988876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.64  E-value=2.4e-14  Score=144.10  Aligned_cols=198  Identities=13%  Similarity=-0.009  Sum_probs=161.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      +.....+...+..+...|++++|+..+.++++.....   .........+..+|.++...|++++|+.++++++.+....
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  148 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence            4555667788899999999999999999999874321   1122345567789999999999999999999999876654


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (729)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (729)
                       ......+.++..+|.+|...|++++|+.+|++++++....... ......++.++|.+|..+|++++|+.+|++++.+.
T Consensus       149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             3334457789999999999999999999999999988765543 22234789999999999999999999999999997


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 004811          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIREEK  675 (729)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  675 (729)
                      ....  +......+++++|.+|..+|++++| ..+|++++.+.+..
T Consensus       227 ~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          227 CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            5432  2445678999999999999999999 88899999987653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=5.1e-15  Score=140.67  Aligned_cols=168  Identities=14%  Similarity=0.099  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 004811          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----------------MGVMYYMLGNYSDSYDS  580 (729)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~  580 (729)
                      +..+...|..+...|++++|+.+|++++.+.|..       ..+++.                +|.+|...|++++|+..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4567889999999999999999999999998765       456666                99999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh--
Q 004811          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL--  658 (729)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--  658 (729)
                      |++++++.        +....++..+|.++...|++++|+.+|++++++        +|+...+++.+|.+|...|+.  
T Consensus        77 ~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           77 YKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence            99999872        224678999999999999999999999999999        899999999999999877643  


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          659 DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       659 ~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..+...|++++.       + .| ...+++.+|.++...|++++|+ ..|+++++++|+
T Consensus       141 ~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~  189 (208)
T 3urz_A          141 KKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCC
T ss_pred             HHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence            445555655542       1 22 3456788999999999999999 999999999997

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.64  E-value=1.2e-14  Score=146.37  Aligned_cols=196  Identities=12%  Similarity=0.022  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (729)
                      ..+...+..+...|++++|+..+.+++...............+..+|.++...|++++|+.++++++.+.....  +...
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~  153 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHH
Confidence            34667788899999999999999988764332222233455677899999999999999999999998643321  2334


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (729)
                      ...++..+|.+|...|++++|+.+|++++.+.+..  .........+++++|.+|..+|++++|+.++++++.+.+.. +
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~  230 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-N  230 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-C
Confidence            57799999999999999999999999999887663  22233334799999999999999999999999999998764 5


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 004811          553 QQSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGE  593 (729)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~  593 (729)
                      .....+.++.++|.+|...|++++| ..+|++++.+.+..+.
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            5667788999999999999999999 8889999998776544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.64  E-value=2.3e-14  Score=144.37  Aligned_cols=196  Identities=13%  Similarity=-0.001  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC
Q 004811          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (729)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (729)
                      ....+...+..+...|++++|+.++++++......   .........+..+|.++...+++++|+.+|++++.+.... .
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-~  149 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-I  149 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-S
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-c
Confidence            34445556788899999999999999998853221   0111224455669999999999999999999999965443 3


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      +......++.++|.+|...|++++|+.+|+++++....... .....+.++.++|.+|..+|++++|+.++++++++...
T Consensus       150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33455678999999999999999999999999998887644 34556789999999999999999999999999999777


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHH
Q 004811          633 ECGPYHPDTLGVYSNLAGTYDAIGR-LDDAIEILEFVVGIREEK  675 (729)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~  675 (729)
                      ...  .+....++..+|.+|..+|+ +++|+.+|++|+.+++..
T Consensus       229 ~~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          229 INS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             TTB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cCc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            543  45668899999999999995 699999999999998753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.64  E-value=1.5e-14  Score=145.64  Aligned_cols=194  Identities=12%  Similarity=0.053  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (729)
                      ..+...+..+...|++++|+..+++++..   ....+.   ....+..+|.++...|++++|+.+|++++.+....  .+
T Consensus        76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~  150 (293)
T 3u3w_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID  150 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence            33455677888999999999999988752   222222   24455668999999999999999999999853221  12


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      ......++.++|.+|...|++++|+.+|+++++..+..  ..+.+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus       151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33446689999999999999999999999999988764  2467788889999999999999999999999999999987


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCC
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      . +.....+.++..+|.+|..+| ++++|+.+|++|+.+.+..+..
T Consensus       229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~  273 (293)
T 3u3w_A          229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH  273 (293)
T ss_dssp             T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            7 666677899999999999999 5799999999999998877654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.63  E-value=7.5e-15  Score=139.50  Aligned_cols=164  Identities=12%  Similarity=0.133  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR----------------LADMYNRTGKLRESKSY  496 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~  496 (729)
                      ..+...|..+...|++++|+.+|++++.+        +|....+++.                +|.+|...|++++|+..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            45677899999999999999999999998        7888888888                99999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH--
Q 004811          497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY--  574 (729)
Q Consensus       497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--  574 (729)
                      |++++++         .|....++..+|.++...|++++|+.+|++++++.|..       ..++..+|.+|...|+.  
T Consensus        77 ~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           77 YKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHHH
Confidence            9999999         44557889999999999999999999999999997766       57889999999877653  


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      ..+...|.+++.       ..  ....+++.+|.++...|++++|+.+|++++++
T Consensus       141 ~~~~~~~~~~~~-------~~--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          141 KKLETDYKKLSS-------PT--KMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHC---C-------CC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC-------CC--chhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            444555555432       11  23456788899999999999999999999998

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=1.1e-14  Score=135.09  Aligned_cols=171  Identities=13%  Similarity=0.156  Sum_probs=150.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      .......+..+|.++...|++++|+.++++++...         +....++..+|.++...|++++|+.++++++...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   74 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD   74 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            34557788999999999999999999999987662         233678999999999999999999999999988554


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .       ..++..+|.++...|++++|+.++++++...+        ....++..+|.++...|++++|+.+|++++..
T Consensus        75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP--------INFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            3       56788999999999999999999999998621        13568899999999999999999999999998


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                              .|....++..+|.++...|++++|+.++++++.+.
T Consensus       140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                    77778899999999999999999999999999875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.63  E-value=1.7e-14  Score=138.94  Aligned_cols=181  Identities=11%  Similarity=0.038  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004811          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (729)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (729)
                      ...++.+|..+...|++++|+..|++++...|..    .....+++.+|.+|...|++++|+..|+++++..+.     .
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-----~   74 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----H   74 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----C
Confidence            4568899999999999999999999999876543    233567889999999999999999999999986322     2


Q ss_pred             hHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------H
Q 004811          597 AFFGVALNQMGLACVQ------------------RYSINEAVELFEEARSILEQECGPYHPDTLG--------------V  644 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~  644 (729)
                      .....+++.+|.++..                  .|++++|+..|+++++.     .|+++....              .
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence            3345678888888876                  57899999999999987     122222222              1


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...+|.+|...|++++|+..|+++++..     |.+|....+++.+|.+|..+|++++|+ ..++.+....|+
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~  216 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCC
Confidence            2578999999999999999999999875     556667789999999999999999999 999999998887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1e-13  Score=148.25  Aligned_cols=235  Identities=10%  Similarity=0.053  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (729)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (729)
                      ....|..+...|+|++|+..|.++++..+......         ......++..+|.+|...|++++|..++.+++.+.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            55678888999999999999999988632210000         023445789999999999999999999999999987


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (729)
Q Consensus       382 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (729)
                      ....  ......++..++.++...|+++.|+.++.+++............+.++..+|.+|...|+|.+|+.++++++..
T Consensus        87 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           87 QFAK--SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             TSCH--HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             Hccc--hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            7642  23345567888999999999999999999999999988888889999999999999999999999999999887


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004811          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (729)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (729)
                      .....  +.+....++..++.+|...|++++|..++++++.+....  ..++......+..+|.++...+++++|..+|.
T Consensus       165 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          165 FKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--YCPTQTVAELDLMSGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             HTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            66543  467888999999999999999999999999999987764  33445567888999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 004811          542 KALKIYNDAP  551 (729)
Q Consensus       542 ~al~~~~~~~  551 (729)
                      +++.......
T Consensus       241 ~a~~~~~~~~  250 (434)
T 4b4t_Q          241 ESFESYHNLT  250 (434)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHhhhhh
Confidence            9999988763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.62  E-value=5.6e-15  Score=166.55  Aligned_cols=201  Identities=12%  Similarity=-0.016  Sum_probs=166.9

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004811          319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM  398 (729)
Q Consensus       319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  398 (729)
                      ...|++++|+..|++++...-......+|....++..+|.++...|++++|+..|+++++..+..        +.+++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--------WRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------HHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------HHHHHHH
Confidence            77899999999999998211111112268888999999999999999999999999999998765        4679999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811          399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV  478 (729)
Q Consensus       399 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  478 (729)
                      |.++...|++++|+..|++++.+      .|....++.++|.++..+|++++ +.+|++++++        +|....+++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~  538 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAF  538 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHH
Confidence            99999999999999999999875      44556788999999999999999 9999999998        888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHhCC
Q 004811          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA-IKLLQKALKIYNDAP  551 (729)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~  551 (729)
                      ++|.++...|++++|+..|++++++         .|....++.++|.++...++.+++ ...+.++++......
T Consensus       539 ~lg~~~~~~g~~~~A~~~~~~al~l---------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          539 GLARARSAEGDRVGAVRTLDEVPPT---------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCTT---------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhccc---------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            9999999999999999999999887         566688899999999887776666 677777777776654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.61  E-value=2.9e-13  Score=130.33  Aligned_cols=190  Identities=10%  Similarity=0.021  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      ..++.+|..+...|++++|+..|++++..     .++.+....+++.+|.+|...|++++|+..|+++++....      
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~------   73 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT------   73 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------
Confidence            45677788888888888888888888776     1223444567888888888888888888888888887332      


Q ss_pred             hHHHHHHHHHHHHHHHh------------------cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH
Q 004811          513 PEEIASGLTDVSSIYES------------------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY  574 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  574 (729)
                      .+....+++.+|.++..                  .|++++|+..|+++++..|+...    ...++..++.+.      
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l~~~~------  143 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRLVFLK------  143 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHHHHHH------
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHH------
Confidence            33344567777777765                  57888888888888877665421    111111111111      


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (729)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (729)
                                 .           ........+|.+|...|++++|+..|+++++.     .|+++....++..+|.+|..
T Consensus       144 -----------~-----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          144 -----------D-----------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             -----------H-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHHH
T ss_pred             -----------H-----------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHHH
Confidence                       0           01234457899999999999999999999998     22344455789999999999


Q ss_pred             cCChHHHHHHHHHHHH
Q 004811          655 IGRLDDAIEILEFVVG  670 (729)
Q Consensus       655 ~g~~~~A~~~~~~al~  670 (729)
                      +|++++|+..++++..
T Consensus       197 ~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          197 MQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHh
Confidence            9999999999997765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.60  E-value=2.3e-15  Score=134.61  Aligned_cols=147  Identities=12%  Similarity=0.153  Sum_probs=127.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 004811          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (729)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (729)
                      .||.++...|++++|+..+++++..         .|.....++.+|.+|...|++++|+.+|++++++.|..       .
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence            4788899999999999999998776         67778889999999999999999999999999997766       6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhcCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL-FEEARSILEQECGPY  637 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~  637 (729)
                      .++..+|.+|...|++++|+.+|++++++.        +....++..+|.+|...|++++|... +++++++        
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------  129 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------  129 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence            889999999999999999999999999872        22467899999999999999887765 5999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCC
Q 004811          638 HPDTLGVYSNLAGTYDAIGR  657 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~  657 (729)
                      +|....++..++.++..+|+
T Consensus       130 ~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          130 FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             STTCHHHHHHHHHHHHTCCC
T ss_pred             CcCCHHHHHHHHHHHHHhCc
Confidence            89888899999999998886

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.58  E-value=1.9e-13  Score=136.00  Aligned_cols=228  Identities=10%  Similarity=0.045  Sum_probs=195.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004811          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG--KLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (729)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (729)
                      .....++|+..+.+++.+        +|....+|+..+.++...|  ++++++.++..++..         .|....+|+
T Consensus        45 ~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------nPk~y~aW~  107 (306)
T 3dra_A           45 AEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---------NEKNYQIWN  107 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------CTTCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---------CcccHHHHH
Confidence            334447899999999999        8999999999999999999  999999999999998         444567888


Q ss_pred             HHHHHH----Hhc---chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhC
Q 004811          522 DVSSIY----ESM---NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--DSYDSFKNAISKLRAIG  592 (729)
Q Consensus       522 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~  592 (729)
                      ..+.++    ...   +++++++.++.+++...++.       ..+|...+.++...|.++  +++.++.++++.     
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----  175 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----  175 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----
Confidence            888888    666   78999999999999988777       588999999999999998  999999999986     


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHHHH
Q 004811          593 ERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEIL  665 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~  665 (729)
                         .+....+|...+.++...+.      ++++++++.+++..        +|....++..++.++...|+..+ ...++
T Consensus       176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~  244 (306)
T 3dra_A          176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS  244 (306)
T ss_dssp             ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence               22245789999999998887      99999999999999        99999999999999999998655 44466


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh-hccc
Q 004811          666 EFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD-ANSR  717 (729)
Q Consensus       666 ~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~-~~p~  717 (729)
                      .+++.+.     ..+|....++..|+.+|.+.|+.++|+ +.|+.+.+ .||-
T Consensus       245 ~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpi  291 (306)
T 3dra_A          245 LQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPI  291 (306)
T ss_dssp             HTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGG
T ss_pred             HHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChH
Confidence            6655431     124677889999999999999999999 99999997 7986

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.57  E-value=2e-13  Score=123.39  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=131.0

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      +....+.++..+|.++...|++++|+.++++++.+.....  +......++..+|.++...|++++|+.++++++.+...
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4455677888899999999999999999999998877654  24555678889999999999999999999999998776


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                      .   .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.+++++++
T Consensus        82 ~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           82 L---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             h---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3   3456667888999999999999999999999999988776 44556677888999999999999999999999988


Q ss_pred             HHHH
Q 004811          587 KLRA  590 (729)
Q Consensus       587 ~~~~  590 (729)
                      +.+.
T Consensus       158 ~~~~  161 (164)
T 3ro3_A          158 ISRE  161 (164)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            7643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.56  E-value=1.3e-13  Score=146.63  Aligned_cols=152  Identities=14%  Similarity=0.098  Sum_probs=141.8

Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (729)
                      ....+..+..+|+|++|+.++++++++.....|..+ ..+.++.+||.+|..+|+|++|+.++++++++.....+..++.
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            334555677899999999999999999998888765 7888999999999999999999999999999999998888899


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      .+..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+..+...|+.++..++.+++|...|.++.+.
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.55  E-value=4.9e-13  Score=120.80  Aligned_cols=157  Identities=15%  Similarity=0.171  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (729)
Q Consensus       389 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (729)
                      ...+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|++++|+.++++++.+.....  
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--   83 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--
Confidence            345678999999999999999999999999999888888888888999999999999999999999999999987764  


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 004811          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (729)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (729)
                      +.+....++..+|.++...|++++|+.++++++.+....   .+.+....++..+|.++...|++++|+.++++++++..
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999998763   34667788999999999999999999999999999876


Q ss_pred             hC
Q 004811          549 DA  550 (729)
Q Consensus       549 ~~  550 (729)
                      ..
T Consensus       161 ~~  162 (164)
T 3ro3_A          161 EV  162 (164)
T ss_dssp             TC
T ss_pred             Hh
Confidence            54

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=6.6e-14  Score=120.72  Aligned_cols=112  Identities=14%  Similarity=0.168  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      +..+..+..+|..++..|+|++|+.+|++++++        +|....++.++|.+|..+|++++|+..|++++++     
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----   76 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----   76 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence            457889999999999999999999999999999        8999999999999999999999999999999988     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccc
Q 004811          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIEL  725 (729)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~  725 (729)
                         +|....+++++|.++..+|++++|+ ..|+++++++|+  .....|+.
T Consensus        77 ---~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           77 ---DSKFIKGYIRKAACLVAMREWSKAQ-RAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ---hhhhhHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCcCCHHHHHHHHH
Confidence               6888999999999999999999999 999999999998  44444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.53  E-value=1.1e-13  Score=127.61  Aligned_cols=170  Identities=16%  Similarity=0.026  Sum_probs=137.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccch
Q 004811          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (729)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (729)
                      +|.....++.+|..+...|+ +++|+..|+++++..         |....++..+|.++...|++++|+..|++++... 
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-   70 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-   70 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred             CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence            34444568899999999997 999999999999875         5568889999999999999999999999999875 


Q ss_pred             hhccccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004811          297 IEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM  375 (729)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (729)
                          + ++..    +..++.+. ...+...+|+..|++++..        +|....+++.+|.++...|++++|+..|++
T Consensus        71 ----p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           71 ----Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             ----C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                3 2221    22233332 2333445689999999998        788999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                      +++..|.....      .++..+|.++...|++++|+..|++++.
T Consensus       134 ~l~~~p~~~~~------~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          134 ILKVNLGAQDG------EVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHTTCTTTTTT------HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCcccChH------HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99987764322      4688999999999999999999998864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=1.8e-13  Score=118.00  Aligned_cols=117  Identities=13%  Similarity=0.213  Sum_probs=106.4

Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (729)
                      .+..+..+..+|..|+..|+|++|+.+|++++++.        +....++.++|.++..+|++++|+..|++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------PENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            34567889999999999999999999999999872        234679999999999999999999999999999    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (729)
                          +|....+++.+|.+|..+|++++|+..|++++++        +|+...++..|+.++
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence                8999999999999999999999999999999998        688888998888764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.51  E-value=5.4e-11  Score=131.56  Aligned_cols=412  Identities=9%  Similarity=-0.063  Sum_probs=262.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHH
Q 004811          239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY  318 (729)
Q Consensus       239 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  318 (729)
                      .+-+..|++++...         |.....|..+.......+.++.+...|++++...     +..    ...|...+...
T Consensus        49 ~d~i~~lE~~l~~n---------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~----~~lW~~Yi~~E  110 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQ---------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLM----ANIWCMRLSLE  110 (679)
T ss_dssp             SCHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCC----HHHHHHHHHHH
Confidence            33445556666542         4456778888888888999999999999999887     222    23477777777


Q ss_pred             HHcCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHh-cCCC
Q 004811          319 AMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALDIHKD-NGSP  386 (729)
Q Consensus       319 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~  386 (729)
                      ...++   ++.+..+|++++....     . +.....|..........++.        +.....|++|+..... ... 
T Consensus       111 ~~~~~~~~~~~v~~lfeRal~~~~-----~-~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~-  183 (679)
T 4e6h_A          111 FDKMEELDAAVIEPVLARCLSKEL-----G-NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPK-  183 (679)
T ss_dssp             HTC--CCCHHHHHHHHHHHTCSSS-----C-CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSS-
T ss_pred             HhhCCcchHHHHHHHHHHHHHhcC-----C-CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccccc-
Confidence            88888   9999999999998720     0 13344666665555555443        3344677777765543 221 


Q ss_pred             CCHHHHHHHHHHHHHH---------HHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HH
Q 004811          387 ASLEEAADRRLMGLIC---------ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LS  444 (729)
Q Consensus       387 ~~~~~a~~~~~lg~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~  444 (729)
                       ..   .+|.......         ...++.+.+..+|.+++.+    +.. ....+|......-             ..
T Consensus       184 -s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~  254 (679)
T 4e6h_A          184 -SI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGEL  254 (679)
T ss_dssp             -CH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHH
T ss_pred             -ch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence             11   2233332222         2344577788888887631    111 1112221111110             11


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcC--CC----------------ChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 004811          445 LSRYDEAGFAYQKALTAFKTNKG--EN----------------HPAVASVFVRLADMYNRTG-------KLRESKSYCEN  499 (729)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~--~~----------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~  499 (729)
                      ..+|+.|...+.+.-.+...+..  +.                .......|......-...+       ........|++
T Consensus       255 ~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~  334 (679)
T 4e6h_A          255 SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQ  334 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHH
Confidence            12334444444332222111100  00                1122344554444333222       12345678999


Q ss_pred             HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004811          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY  578 (729)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  578 (729)
                      ++..+         +....+|...+..+...|+.++|+ ..|++|+..+|..       ..++..++.+....|+++.|.
T Consensus       335 aL~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR  398 (679)
T 4e6h_A          335 AAQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIE  398 (679)
T ss_dssp             HHHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHH
Confidence            99883         334678999999999999999997 9999999876654       456778899999999999999


Q ss_pred             HHHHHHHHHHHHh-------CCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004811          579 DSFKNAISKLRAI-------GERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (729)
Q Consensus       579 ~~~~~al~~~~~~-------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  644 (729)
                      ..|++++......       .+..       ......+|...+.+..+.|+.+.|..+|.+|++..       .+....+
T Consensus       399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~l  471 (679)
T 4e6h_A          399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDI  471 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHH
T ss_pred             HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHH
Confidence            9999999864211       0100       01244578888888888999999999999998751       0112345


Q ss_pred             HHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          645 YSNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       645 ~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      +...|.+....+ +++.|..+|+.+++.+        |+....+...+.+....|+.+.|. ..|+.++...|
T Consensus       472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~  535 (679)
T 4e6h_A          472 YLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence            666677666665 4999999999999875        445556677788888999999999 99999999877

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.51  E-value=1.6e-12  Score=129.32  Aligned_cols=237  Identities=8%  Similarity=-0.071  Sum_probs=196.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM  483 (729)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  483 (729)
                      ...++|+..+.+++.+      .|....+|+..+.++..+|  ++++++.++.+++..        +|....+|+..+.+
T Consensus        47 e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~i  112 (306)
T 3dra_A           47 EYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLI  112 (306)
T ss_dssp             CCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHH
Confidence            3447899999999875      6777789999999999999  999999999999998        89999999999999


Q ss_pred             H----HHc---CCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHhCCCCC
Q 004811          484 Y----NRT---GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE--QAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       484 ~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~  554 (729)
                      +    ...   +++++++.++.++++.         +|....+|...+.++...|.++  +++.++.++++..+..    
T Consensus       113 L~~~~~~l~~~~~~~~EL~~~~~~l~~---------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N----  179 (306)
T 3dra_A          113 IGQIMELNNNDFDPYREFDILEAMLSS---------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN----  179 (306)
T ss_dssp             HHHHHHHTTTCCCTHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHhccccCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC----
Confidence            9    767   7999999999999998         4556789999999999999998  9999999999987666    


Q ss_pred             CcHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 004811          555 STVAGIEAQMGVMYYMLGN------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE-AVELFEEAR  627 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al  627 (729)
                         ..+|...+.++...+.      +++++.++.+++.+        .+....+|+.++.++...|+..+ ...++.+++
T Consensus       180 ---~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~  248 (306)
T 3dra_A          180 ---NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV  248 (306)
T ss_dssp             ---HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred             ---HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence               5788899999988887      99999999999986        22245789999999999988544 444556555


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004811          628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (729)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (729)
                      .+-     ..++....++..+|.+|...|+.++|+++|+.+.+.       .+|.....+...+.
T Consensus       249 ~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~yW~~~~~  301 (306)
T 3dra_A          249 DLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNFWDYQIS  301 (306)
T ss_dssp             EGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHHHHHHHH
T ss_pred             hcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHh
Confidence            431     113666779999999999999999999999998752       27877777766554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=3.2e-13  Score=135.18  Aligned_cols=167  Identities=13%  Similarity=0.098  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004811          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (729)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (729)
                      ....+..+|..+...|++++|+..|++++...|..       ..++..+|.++...|++++|+..|++++...       
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------  181 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------  181 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-------
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-------
Confidence            45678899999999999999999999999998766       5788999999999999999999999987642       


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      + .........+..+...++.++|+..|++++..        +|+...+++.+|.+|...|++++|+..|++++..    
T Consensus       182 p-~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----  248 (287)
T 3qou_A          182 Q-DTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX----  248 (287)
T ss_dssp             C-SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             c-chHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence            1 23455666777788889999999999999999        8999999999999999999999999999999987    


Q ss_pred             cCCCChhH--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          676 LGTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       676 ~g~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                          +|..  ..++.+|+.++...|+.++|. ..|++++..
T Consensus       249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al~~  284 (287)
T 3qou_A          249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQLYA  284 (287)
T ss_dssp             ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHHHH
Confidence                5666  889999999999999999999 999988753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.49  E-value=1.1e-13  Score=127.43  Aligned_cols=164  Identities=14%  Similarity=0.171  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      ..+..+|..+...|++++|+..|++++...|..       ..++..+|.++...|++++|+..|++++...    + . +
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~-~   73 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQFELAQELLATIPLEY----Q-D-N   73 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-C-H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-C-h
Confidence            457789999999999999999999999999887       5789999999999999999999999987642    1 1 1


Q ss_pred             HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004811          598 FFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       598 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                         ..+..++.+. ...+...+|+..|++++..        +|+...+++.+|.++...|++++|+..|++++++     
T Consensus        74 ---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----  137 (176)
T 2r5s_A           74 ---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-----  137 (176)
T ss_dssp             ---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred             ---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence               2233334332 2333445689999999999        8999999999999999999999999999999965     


Q ss_pred             CCCChhH--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          677 GTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       677 g~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                         +|..  ..++..|+.++...|+.++|. ..|++++..
T Consensus       138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~~al~~  173 (176)
T 2r5s_A          138 ---NLGAQDGEVKKTFMDILSALGQGNAIA-SKYRRQLYS  173 (176)
T ss_dssp             ---CTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHHHHHHH
T ss_pred             ---CcccChHHHHHHHHHHHHHhCCCCcHH-HHHHHHHHH
Confidence               4544  568999999999999999999 999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.49  E-value=6.1e-13  Score=133.16  Aligned_cols=170  Identities=15%  Similarity=0.014  Sum_probs=149.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchh
Q 004811          218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI  297 (729)
Q Consensus       218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  297 (729)
                      |.....++.+|..+...|+ +++|+..|++++...         |+...++..+|.++...|++++|+..|++++...  
T Consensus       114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--  181 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLS---------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--  181 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--
T ss_pred             CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--
Confidence            7888999999999999998 999999999999874         4457789999999999999999999999998875  


Q ss_pred             hccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004811          298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (729)
Q Consensus       298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (729)
                         ++..    ..+...+..+...++.++|+..|++++..        +|....+++.+|.++...|++++|+..|.+++
T Consensus       182 ---p~~~----~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l  246 (287)
T 3qou_A          182 ---QDTR----YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHL  246 (287)
T ss_dssp             ---CSHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---cchH----HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               3222    23666777788889999999999999999        79999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       378 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                      +..|...+      ..++..++.++...|+.++|+..|++++.
T Consensus       247 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          247 RXDLTAAD------GQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHCTTGGG------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hccccccc------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99876532      35689999999999999999999998875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.49  E-value=6.2e-13  Score=139.16  Aligned_cols=122  Identities=12%  Similarity=0.140  Sum_probs=116.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (729)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (729)
                      ..|+|++|+.++++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++++.++.+|++||+.+..+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004811          650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA  691 (729)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La  691 (729)
                      .+|..+|++++|+.+|++|+++++..+|++||.+..+..+|.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999999999999999998887764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.49  E-value=2.9e-13  Score=131.14  Aligned_cols=209  Identities=11%  Similarity=-0.012  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-------HHHHHhcchHHHHHHHHHHHHHHHH
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV-------SSIYESMNELEQAIKLLQKALKIYN  548 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~  548 (729)
                      .++..|.-+ ..+++..|...|.+++++         .|..+.+|..+       +.++...++..+++..+++++.+.+
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p   78 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM   78 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            344455555 589999999999999999         66778999999       8999999999999999999999877


Q ss_pred             hCCCCCCc--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC
Q 004811          549 DAPGQQST--------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (729)
Q Consensus       549 ~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  614 (729)
                      ...+....              ...+...++.++...|+|++|...|..++..       .+. .. ..+.+|.++.+.+
T Consensus        79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~p~-~~-~~~~~a~l~~~~~  149 (282)
T 4f3v_A           79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------GSE-HL-VAWMKAVVYGAAE  149 (282)
T ss_dssp             GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------TCH-HH-HHHHHHHHHHHTT
T ss_pred             hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCc-hH-HHHHHHHHHHHcC
Confidence            65433322              2456677899999999999999999877642       222 33 8889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHH
Q 004811          615 SINEAVELFEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAE  692 (729)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La~  692 (729)
                      +|++|+.+|+++...      + +|.. ..+++.+|.++..+|++++|+.+|++++.      ++..|. ...+++.+|.
T Consensus       150 r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          150 RWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAM  216 (282)
T ss_dssp             CHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHH
Confidence            999999999876543      1 2332 45899999999999999999999999873      233365 7789999999


Q ss_pred             HHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          693 LLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       693 ~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++..+|+.++|. ..|++++..+|+
T Consensus       217 aL~~lGr~deA~-~~l~~a~a~~P~  240 (282)
T 4f3v_A          217 ARRSQGNESAAV-ALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHTCHHHHH-HHHHHHHHHSCC
T ss_pred             HHHHcCCHHHHH-HHHHHHHhcCCc
Confidence            999999999999 999999999996

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.48  E-value=8.3e-14  Score=123.72  Aligned_cols=104  Identities=10%  Similarity=0.041  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      +....+++.+|.++...|++++|+.+|++++.+        +|....+|.++|.+|..+|++++|+..|++++.+     
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----   99 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----   99 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence            446789999999999999999999999999999        8999999999999999999999999999999998     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                         +|+.+.+++++|.+|..+|++++|+ ..|++++++.|+
T Consensus       100 ---~P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~  136 (151)
T 3gyz_A          100 ---GKNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSND  136 (151)
T ss_dssp             ---SSSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred             ---CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence               6888889999999999999999999 999999999997

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.47  E-value=5.8e-13  Score=147.58  Aligned_cols=156  Identities=10%  Similarity=0.063  Sum_probs=126.8

Q ss_pred             cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 004811          530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (729)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  609 (729)
                      .|++++|+.+|+++++..+..       ..++..+|.++...|++++|+.+|++++++.        +....++..+|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALH--------PGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------TTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence            478999999999999887655       5789999999999999999999999999862        2246789999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 004811          610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (729)
Q Consensus       610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (729)
                      |...|++++|+.+|++++++        +|+...++..+|.+|..+|++++|+.+|++++++        +|....++..
T Consensus        67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  130 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ  130 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            99999999999999999999        8888999999999999999999999999999987        6788889999


Q ss_pred             HHHHHHHh---CCHhHHHHHHHHHHHhhccc
Q 004811          690 LAELLKEA---GRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       690 La~~~~~~---g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++.++...   |++++|. ..|+++++.+|+
T Consensus       131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~  160 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCC
T ss_pred             HHHHHHHhhccccHHHHH-HHHHHHHhcCCc
Confidence            99999999   9999999 999999999997

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.47  E-value=8.6e-13  Score=138.55  Aligned_cols=131  Identities=13%  Similarity=-0.025  Sum_probs=123.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (729)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (729)
                      -+..+|+|++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++.+.+..+|++||+.+..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            34578999999999999999887777777888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811          647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (729)
                      +||.+|..+|++++|+.+|++|+++++..+|++||.+..++.+|+.+....
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.46  E-value=2.2e-12  Score=122.71  Aligned_cols=177  Identities=18%  Similarity=0.134  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 004811          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE  528 (729)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  528 (729)
                      .+|+.+|+++.+.          ..+.+++.+|.+|...+++++|+.+|+++++.      +     ...++++||.+|.
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g-----~~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------G-----DGDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T-----CHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C-----CHHHHHHHHHHHH
Confidence            3577788888763          34678999999999999999999999999875      1     2568999999999


Q ss_pred             hcc----hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 004811          529 SMN----ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (729)
Q Consensus       529 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (729)
                      . +    ++++|+.+|+++.+.     +    ...+++.||.+|..    .+++++|+.+|+++++.-      .....+
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~~-----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~  125 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVEA-----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAV  125 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchH
Confidence            8 7    899999999999653     1    15678899999998    899999999999998641      111246


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHH
Q 004811          601 VALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G-----RLDDAIEILEFVVG  670 (729)
Q Consensus       601 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~  670 (729)
                      .+++.||.+|..    .+++++|+.+|+++++.         +....++++||.+|... |     ++++|+.+|+++++
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            899999999999    88999999999999875         23344889999999864 3     89999999999997


Q ss_pred             H
Q 004811          671 I  671 (729)
Q Consensus       671 ~  671 (729)
                      .
T Consensus       197 ~  197 (212)
T 3rjv_A          197 E  197 (212)
T ss_dssp             H
T ss_pred             c
Confidence            5

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.46  E-value=2.1e-13  Score=132.15  Aligned_cols=218  Identities=14%  Similarity=0.059  Sum_probs=170.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL-------ADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      +..|.-+ ..+++..|...|.+++.+        +|..+.+|..+       +.++...++..+++..+.+++.+....+
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l   81 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL   81 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence            4445555 589999999999999999        89999999999       8999999999999999999988543322


Q ss_pred             CCCCh------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Q 004811          509 PGVPP------------EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD  576 (729)
Q Consensus       509 ~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  576 (729)
                      .....            .....+...++.++...|+|++|.+.|..++...       +... ..+.+|.++...++|++
T Consensus        82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-------p~~~-~~~~~a~l~~~~~r~~d  153 (282)
T 4f3v_A           82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-------SEHL-VAWMKAVVYGAAERWTD  153 (282)
T ss_dssp             CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------CHHH-HHHHHHHHHHHTTCHHH
T ss_pred             hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CchH-HHHHHHHHHHHcCCHHH
Confidence            11000            0123456778999999999999999998766522       2223 77899999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHc
Q 004811          577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-TLGVYSNLAGTYDAI  655 (729)
Q Consensus       577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~  655 (729)
                      |+.+|+++...      .++.....+++.+|.++..+|++++|+.+|++++.-      +..|. ...+++.+|.++..+
T Consensus       154 A~~~l~~a~~~------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~glaL~~l  221 (282)
T 4f3v_A          154 VIDQVKSAGKW------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------PAGEACARAIAWYLAMARRSQ  221 (282)
T ss_dssp             HHHHHTTGGGC------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcc------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHHHHHHHHc
Confidence            99999866442      111223458999999999999999999999999742      21255 667999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004811          656 GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA  691 (729)
Q Consensus       656 g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La  691 (729)
                      |+.++|...|++++..        +|. ..+...|.
T Consensus       222 Gr~deA~~~l~~a~a~--------~P~-~~~~~aL~  248 (282)
T 4f3v_A          222 GNESAAVALLEWLQTT--------HPE-PKVAAALK  248 (282)
T ss_dssp             TCHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence            9999999999999987        566 55555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.46  E-value=1.1e-12  Score=124.86  Aligned_cols=178  Identities=11%  Similarity=0.027  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 004811          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (729)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (729)
                      .+|+.+|+++.+.           ..+.+++.||.+|...+++++|+.+|+++.+.     +.    ..+++.+|.+|..
T Consensus         3 ~eA~~~~~~aa~~-----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~----~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA-----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GD----GDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHc
Confidence            3577888888765           12568999999999999999999999999864     21    4778899999998


Q ss_pred             cC----CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCh--h
Q 004811          571 LG----NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHP--D  640 (729)
Q Consensus       571 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~--~  640 (729)
                       +    ++++|+.+|+++.+.          ....+++.||.+|..    .+++++|+.+|+++++.        .+  .
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcc
Confidence             7    999999999999653          135789999999998    88999999999999986        44  4


Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh-C-----CHhHHHHHHHHH
Q 004811          641 TLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA-G-----RVRSRKAQSLET  710 (729)
Q Consensus       641 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~-g-----~~~~A~~~~l~~  710 (729)
                      ...++++||.+|..    .+++++|+.+|+++++.         +....++++||.+|... |     ++++|+ .+|++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~-~~~~~  193 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL-HWLNV  193 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHH
Confidence            57899999999999    89999999999999864         33445899999999864 3     899999 99999


Q ss_pred             HHhhccc
Q 004811          711 LLDANSR  717 (729)
Q Consensus       711 al~~~p~  717 (729)
                      +++....
T Consensus       194 A~~~g~~  200 (212)
T 3rjv_A          194 SCLEGFD  200 (212)
T ss_dssp             HHHHTCH
T ss_pred             HHHcCCH
Confidence            9987543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.44  E-value=1.8e-11  Score=122.26  Aligned_cols=226  Identities=11%  Similarity=0.034  Sum_probs=186.9

Q ss_pred             HHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCCC
Q 004811          443 LSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       443 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      ...|.+. +|+..+.+++.+        +|....+|+..+.++...+.          +++++.++..++..        
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------  103 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------  103 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence            4556665 799999999998        89999999999999988776          68899999999988        


Q ss_pred             ChHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 004811          512 PPEEIASGLTDVSSIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSDSYDSFKNAISKL  588 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  588 (729)
                       +|....+|...+.++...++  +++++.++.+++++.+..       ..+|...+.++...|. +++++.++.+++.. 
T Consensus       104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-  174 (331)
T 3dss_A          104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-  174 (331)
T ss_dssp             -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred             -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence             45557899999999999984  899999999999988776       5788999999999998 69999999999986 


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          589 RAIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (729)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (729)
                             .+....+|+.++.++...              +.++++++++.+++.+        +|+...+|+.+..++..
T Consensus       175 -------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          175 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             -------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred             -------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence                   222457888888888876              4689999999999999        89999999877777665


Q ss_pred             c-----------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH---HhCCHhHHHHHHHHHHHhhccc
Q 004811          655 I-----------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK---EAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       655 ~-----------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~---~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .           +.++++++.+.+++++        .|+...++..++.+..   ..|..++.. .+|.+++++||-
T Consensus       240 ~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~  307 (331)
T 3dss_A          240 GSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPM  307 (331)
T ss_dssp             SSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGG
T ss_pred             ccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcc
Confidence            5           4578888888888877        5676666655554433   357788888 999999999997

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.43  E-value=7.1e-13  Score=146.89  Aligned_cols=153  Identities=12%  Similarity=0.023  Sum_probs=122.4

Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (729)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (729)
                      .|++++|+.+|+++++.         .+....++..+|.++...|++++|+.+|++++++.+..       ..++..+|.
T Consensus         2 ~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH---------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGR   65 (568)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence            47899999999999988         34456789999999999999999999999999986554       578899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (729)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (729)
                      +|...|++++|+.+|++++++.        +....++..+|.++...|++++|+.+|++++++        +|....++.
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~  129 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITA  129 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence            9999999999999999999872        223678999999999999999999999999999        888889999


Q ss_pred             HHHHHHHHc---CChHHHHHHHHHHHHH
Q 004811          647 NLAGTYDAI---GRLDDAIEILEFVVGI  671 (729)
Q Consensus       647 ~la~~~~~~---g~~~~A~~~~~~al~~  671 (729)
                      .+|.++..+   |++++|+..|+++++.
T Consensus       130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            999999999   9999999999999987

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.43  E-value=3.6e-13  Score=138.00  Aligned_cols=164  Identities=15%  Similarity=0.165  Sum_probs=139.9

Q ss_pred             hcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------ChHHHH
Q 004811          529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-------SAFFGV  601 (729)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~  601 (729)
                      .++++++|+..+++++...+..       +.++..+|.+++..|++++|+.+|++++.+.+......       .+....
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence            4567788888888888776655       67889999999999999999999999999854321100       112257


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      ++.++|.+|..+|++++|+.+|++++.+        +|....+++.+|.+|..+|++++|+.+|++++++        +|
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P  261 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP  261 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence            8999999999999999999999999999        8999999999999999999999999999999988        68


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                      ....++..|+.++...|++++|....|++++...
T Consensus       262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999999999646777776553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.42  E-value=7.1e-12  Score=109.00  Aligned_cols=134  Identities=20%  Similarity=0.342  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      .++..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            357789999999999999999999998752        113567888999999999999999999999988        6


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      |....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|. ..+++++..+|+
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~  135 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence            777789999999999999999999999999986        4666788999999999999999999 999999999884

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.41  E-value=4.8e-12  Score=109.17  Aligned_cols=109  Identities=15%  Similarity=0.214  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      .+.++.++|.+++..|+|++|+.+|++|+++        +|....++.++|.+|..+|++++|+..|++++++.... ..
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~   77 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-ch
Confidence            5678899999999999999999999999999        89999999999999999999999999999999986543 23


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .++....++.++|.++...|++++|+ ..|++++..+|+
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~  115 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSEFRD  115 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence            34556789999999999999999999 999999998886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.39  E-value=3.8e-12  Score=112.95  Aligned_cols=102  Identities=10%  Similarity=-0.003  Sum_probs=93.8

Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (729)
                      .+....+++.+|.++...|++++|+.+|++++.+.        +....+|..+|.++..+|++++|+.+|++++.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            34457889999999999999999999999999872        234679999999999999999999999999999    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                          +|+...+++++|.+|..+|++++|+..|++++++
T Consensus       100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                8888899999999999999999999999999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.38  E-value=6.1e-12  Score=108.52  Aligned_cols=108  Identities=10%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      ++.+.++.++|..++..|+|++|+.+|++++++         .|....++.++|.+|..+|++++|+..|++++++.+..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            566788999999999999999999999999999         44557889999999999999999999999999999988


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                      .......+.++..+|.++..+|++++|+.+|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666677889999999999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.37  E-value=4.5e-12  Score=112.64  Aligned_cols=126  Identities=13%  Similarity=0.079  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 004811          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (729)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (729)
                      .|++++.+.+..       ...++.+|.++...|++++|+.+|++++.+.        +....+|..+|.++...|++++
T Consensus         9 ~~~~al~~~p~~-------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~   73 (148)
T 2vgx_A            9 TIAMLNEISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------HYDSRFFLGLGACRQAMGQYDL   73 (148)
T ss_dssp             SHHHHTTCCHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHcCCHhh-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------cccHHHHHHHHHHHHHHhhHHH
Confidence            455555444433       6778899999999999999999999999862        2246788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004811          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (729)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (729)
                      |+.+|++++.+        +|+...+++.+|.+|..+|++++|+.+|++++++.     +.+|.........-.
T Consensus        74 A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~  134 (148)
T 2vgx_A           74 AIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRVSS  134 (148)
T ss_dssp             HHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHHHH
Confidence            99999999999        88888899999999999999999999999999886     556666544433333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.36  E-value=5.3e-12  Score=120.15  Aligned_cols=139  Identities=12%  Similarity=0.007  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      ..++.+|.++...|++++|+.+|++++.       .    ...++..+|.++...|++++|+.+|++++.+        +
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            4467899999999999999999998841       1    2468999999999999999999999999999        8


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc--------CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL--------GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (729)
                      |....++..+|.+|..+|++++|+.+|++++.+.....        ....|....+++.+|.++...|++++|. ..|++
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~  146 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL  146 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence            88889999999999999999999999999998631100        0023566799999999999999999999 99999


Q ss_pred             HHhhccc
Q 004811          711 LLDANSR  717 (729)
Q Consensus       711 al~~~p~  717 (729)
                      ++.++|+
T Consensus       147 al~~~p~  153 (213)
T 1hh8_A          147 ATSMKSE  153 (213)
T ss_dssp             HHTTCCS
T ss_pred             HHHcCcc
Confidence            9999995

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.36  E-value=3e-12  Score=113.78  Aligned_cols=104  Identities=14%  Similarity=0.087  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      +....+++.+|.++...|++++|+.+|++++.+        +|....+++.+|.+|..+|++++|+.+|++++.+     
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   84 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----   84 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            446778999999999999999999999999999        8999999999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                         +|+...+++.+|.+|...|++++|+ ..|+++++++|+
T Consensus        85 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  121 (148)
T 2vgx_A           85 ---DIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQELIAN  121 (148)
T ss_dssp             ---STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTT
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence               5778889999999999999999999 999999999886

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.35  E-value=3.7e-11  Score=120.39  Aligned_cols=248  Identities=11%  Similarity=0.020  Sum_probs=190.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcC
Q 004811          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKP  507 (729)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  507 (729)
                      +....++..+..+....+..++|+..+.+++.+        +|....+|+..+.++...| .+++++.+++.++..    
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence            344455555556666677778899999999998        8889999999999999999 599999999999987    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--------HH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESM-N-ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--------DS  577 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A  577 (729)
                           .|....+|+..+.++... + ++++++.++.+++...++.       ..+|...+.++...|.++        ++
T Consensus       119 -----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eE  186 (349)
T 3q7a_A          119 -----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSE  186 (349)
T ss_dssp             -----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence                 444577899999998887 7 8889999999988776655       577888888888888777        89


Q ss_pred             HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004811          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (729)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  650 (729)
                      +.++.++++.        .+....+|+..+.++...+.       ++++++++.+++.+        +|....++..+..
T Consensus       187 Le~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~  250 (349)
T 3q7a_A          187 LDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRG  250 (349)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            9999988886        22245789999999998886       79999999999999        9999999999999


Q ss_pred             HHHHcCChHH------------HHH-HHHHHHHHHHHHcCC-----CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004811          651 TYDAIGRLDD------------AIE-ILEFVVGIREEKLGT-----ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (729)
Q Consensus       651 ~~~~~g~~~~------------A~~-~~~~al~~~~~~~g~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (729)
                      ++...|+...            .+. .+......+....+.     ..+....++..|+.+|...|+.++|. +.++.+.
T Consensus       251 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~  329 (349)
T 3q7a_A          251 FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLS  329 (349)
T ss_dssp             HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Confidence            9998887511            000 011222222222222     12466788999999999999999999 9999987


Q ss_pred             -hhccc
Q 004811          713 -DANSR  717 (729)
Q Consensus       713 -~~~p~  717 (729)
                       +.||-
T Consensus       330 ~~~dpi  335 (349)
T 3q7a_A          330 SEYDQM  335 (349)
T ss_dssp             HTTCGG
T ss_pred             hhhChH
Confidence             56773

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.35  E-value=3.5e-10  Score=112.89  Aligned_cols=238  Identities=8%  Similarity=-0.005  Sum_probs=188.3

Q ss_pred             HHhCCHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          403 ETKGDHE-AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR----------YDEAGFAYQKALTAFKTNKGENHP  471 (729)
Q Consensus       403 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~  471 (729)
                      ...|++. +|+..+.+++.      ..|....+|+..+.++...+.          +++++.++..++..        +|
T Consensus        40 ~~~~e~s~eaL~~t~~~L~------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~P  105 (331)
T 3dss_A           40 RQAGELDESVLELTSQILG------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NP  105 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CC
Confidence            3456655 78999988874      467777889999998887776          68888999998887        89


Q ss_pred             hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHH
Q 004811          472 AVASVFVRLADMYNRTGK--LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYN  548 (729)
Q Consensus       472 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  548 (729)
                      ....+|...+.++...++  +++++.++.++++.         ++....+|...+.+....|. +++++.++.+++...+
T Consensus       106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A          106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence            999999999999999994  89999999999998         55567889999999999998 6999999999998876


Q ss_pred             hCCCCCCcHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc-
Q 004811          549 DAPGQQSTVAGIEAQMGVMYYML--------------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-  613 (729)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-  613 (729)
                      ..       ..+|..++.++...              +.+++++.++.+++.+.        +....+|+.+..++... 
T Consensus       177 ~N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~~~~  241 (331)
T 3dss_A          177 SN-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGAGS  241 (331)
T ss_dssp             CC-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHSSS
T ss_pred             CC-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcc
Confidence            65       57888888888877              45889999999998862        22346676555555544 


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004811          614 ----------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD---AIGRLDDAIEILEFVVGIREEKLGTAN  680 (729)
Q Consensus       614 ----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (729)
                                +.++++++++.+++++        .|+...++..++.+..   ..|..++...++.+.+++        +
T Consensus       242 ~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------D  305 (331)
T 3dss_A          242 GRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------D  305 (331)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------C
T ss_pred             CccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------C
Confidence                      4578999999999998        7887666666655433   357788999999999987        7


Q ss_pred             hhHHHHHHHHHHHH
Q 004811          681 PDVDDEKRRLAELL  694 (729)
Q Consensus       681 p~~~~~~~~La~~~  694 (729)
                      |....-|..|+.-+
T Consensus       306 p~r~~~y~d~~~~~  319 (331)
T 3dss_A          306 PMRAAYLDDLRSKF  319 (331)
T ss_dssp             GGGHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHH
Confidence            87766666655433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.35  E-value=6.1e-12  Score=128.84  Aligned_cols=164  Identities=12%  Similarity=0.065  Sum_probs=134.3

Q ss_pred             cccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHhHHHHHHHHHH
Q 004811          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIAA  273 (729)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~~~~la~  273 (729)
                      -..+..+++.+.......|..+..+..+|..++..|+ |++|+.+|++|+.+.+......      ..+..+.++.++|.
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3445556656666666688899999999999999997 9999999999999863321000      01223678999999


Q ss_pred             HHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004811          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (729)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (729)
                      +|..+|++++|+.+|++++++.     +..    ..+++.+|.+|..+|++++|+.+|++++++        +|....++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~-----p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~  267 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELD-----SNN----EKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAK  267 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-----CCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHH
Confidence            9999999999999999999986     333    345999999999999999999999999999        78889999


Q ss_pred             HHHHHHHHHhcCHHHH-HHHHHHHHHHHH
Q 004811          354 RYLAEAHVQALQFSEA-QKFCQMALDIHK  381 (729)
Q Consensus       354 ~~la~~~~~~g~~~~A-~~~~~~al~~~~  381 (729)
                      ..++.++...|++++| ...|.+++....
T Consensus       268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          268 TQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999 557777776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.34  E-value=1.8e-11  Score=107.00  Aligned_cols=116  Identities=12%  Similarity=-0.023  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECG----PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      +..+..+|..++..|+|++|+..|++|+++......    ...|....+|.++|.++..+|++++|+..|+++++++.+.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567888999999999999999999999999322000    0011234499999999999999999999999999985544


Q ss_pred             cCCCChhHHHHH----HHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          676 LGTANPDVDDEK----RRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       676 ~g~~~p~~~~~~----~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      . +-+|+...+|    +++|.++..+|++++|+ ..|+++++++|+
T Consensus        91 ~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl-~~y~kAlel~p~  134 (159)
T 2hr2_A           91 G-ELNQDEGKLWISAVYSRALALDGLGRGAEAM-PEFKKVVEMIEE  134 (159)
T ss_dssp             C-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             c-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence            3 5568999999    99999999999999999 999999999998

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.34  E-value=1.5e-11  Score=122.56  Aligned_cols=194  Identities=15%  Similarity=0.072  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      +..+..+|..+...|++++|+.+|++++..        .|....++.++|.+|...|++++|+..|++++++        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            467889999999999999999999999998        7888899999999999999999999999999987        


Q ss_pred             ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                       .|....+++.+|.+|..+|++++|+.+|++++.+.+..............    ...      ++..+..    .....
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----~~~------~~~~~~~----~~~~~  132 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----RIA------KKKRWNS----IEERR  132 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----HHH------HHHHHHH----HHHTC
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----HHH------HHHHHHH----HHHHH
Confidence             44457789999999999999999999999999999876433222211111    111      1111111    11111


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 004811          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-GRLDDAIEILEFVVG  670 (729)
Q Consensus       592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  670 (729)
                      .... .   .+...++.++  .|++++|++.|+++++.        +|........++.++... +.+++|..+|.++.+
T Consensus       133 ~~~~-~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          133 IHQE-S---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             CCCC-C---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             Hhhh-H---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            1111 1   2334444443  68999999999999987        777777777888777766 778899999988765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.33  E-value=4.3e-11  Score=103.93  Aligned_cols=131  Identities=27%  Similarity=0.448  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      .++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...        
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence            35778899999999999999999999987        56677889999999999999999999999999882        


Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                       +....++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|..+|++++..
T Consensus        66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence             2235678899999999999999999999999875543       467788999999999999999999998875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=6e-11  Score=107.57  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ..+..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            34567889999999999999999999999998        6777899999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (729)
                         .+....++..+|.++...|++++|+.+|++++.+.+..     .....+..++..+...|++++|+.++.++..+..
T Consensus        77 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           77 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence               33346789999999999999999999999999986544     1122335566668889999999999999988876


Q ss_pred             HhC
Q 004811          590 AIG  592 (729)
Q Consensus       590 ~~~  592 (729)
                      ...
T Consensus       149 ~~~  151 (166)
T 1a17_A          149 SLD  151 (166)
T ss_dssp             HCC
T ss_pred             ccc
Confidence            543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=6.6e-11  Score=107.27  Aligned_cols=136  Identities=15%  Similarity=0.114  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (729)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (729)
                      .+..+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++.+       
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------   76 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            35678899999999999999999999999862        123678999999999999999999999999999       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH--HHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK--RRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~--~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                       +|....++..+|.++..+|++++|+.+|++++.+        +|....++  ..++..+...|++++|+ ..++++..+
T Consensus        77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~  146 (166)
T 1a17_A           77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSV  146 (166)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HcccchHHH
Confidence             7888889999999999999999999999999987        35555555  45555588999999999 999988877


Q ss_pred             ccc
Q 004811          715 NSR  717 (729)
Q Consensus       715 ~p~  717 (729)
                      .+.
T Consensus       147 ~~~  149 (166)
T 1a17_A          147 VDS  149 (166)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            655

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=5.1e-11  Score=102.61  Aligned_cols=121  Identities=14%  Similarity=0.141  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      +..+..+|..+...|++++|+.+|++++.+.        +....++..+|.++...|++++|+..|++++.+        
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------   67 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--------   67 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            5678899999999999999999999999872        224678999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE  696 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~  696 (729)
                      +|....+++.+|.++..+|++++|+..|++++.+....  ...|....++..++.+...
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHHh
Confidence            89989999999999999999999999999999985333  1236777778777776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.31  E-value=5.1e-12  Score=118.83  Aligned_cols=168  Identities=13%  Similarity=0.071  Sum_probs=113.4

Q ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC------
Q 004811          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS------  596 (729)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------  596 (729)
                      .+......|++++|.+.+..........       +..+..+|..+...|+|++|+.+|.+++.+.+.......      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   82 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQS-------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK   82 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            3444455566666665555443333222       455667777777888888888888777765332111000      


Q ss_pred             --hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811          597 --AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       597 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (729)
                        .....++.++|.++...|++++|+.+|++++.+        +|....+++.+|.+|..+|++++|+.+|++++.+   
T Consensus        83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---  151 (198)
T 2fbn_A           83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---
Confidence              012378899999999999999999999999999        8888899999999999999999999999999987   


Q ss_pred             HcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          675 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       675 ~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                           +|....++..++.++...++..++....+..++.
T Consensus       152 -----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          152 -----NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             -----STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 6888889999999999999888877445555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.31  E-value=2e-11  Score=110.49  Aligned_cols=132  Identities=16%  Similarity=0.142  Sum_probs=111.0

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---C-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER---K-------SAFFGVALNQMGLACVQRYSINEAVELFEE  625 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  625 (729)
                      ..+..+..+|..++..|+|++|+.+|.+++.+.......   .       .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            446778899999999999999999999999986654211   0       233567899999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH-HHHHHHHHHHHHhCCHhHH
Q 004811          626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD-DEKRRLAELLKEAGRVRSR  703 (729)
Q Consensus       626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~-~~~~~La~~~~~~g~~~~A  703 (729)
                      ++.+        +|....+++.+|.+|..+|++++|+..|++++.+        +|... .+...|+.+....++..+.
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999        8999999999999999999999999999999988        67776 6677777777666555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=6.4e-11  Score=101.98  Aligned_cols=121  Identities=16%  Similarity=0.145  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ..+..+..+|..++..|++++|+.+|++++.+        .|....++..+|.++...|++++|+..|++++++      
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34577889999999999999999999999998        7888899999999999999999999999999999      


Q ss_pred             CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Q 004811          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY  568 (729)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  568 (729)
                         .|....++..+|.++..+|++++|+..|++++.+.+... ..+....++..++.+.
T Consensus        68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN-NGSSAREIDQLYYKAS  122 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC-CchhHHHHHHHHHHHH
Confidence               344577899999999999999999999999999986542 2222234445555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.31  E-value=3.8e-12  Score=126.84  Aligned_cols=195  Identities=12%  Similarity=0.031  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      +..+..+|..++..|+|++|+..|++++.+.     +.++    .++..+|.+|..+|++++|+..|++++++       
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~-------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            5678899999999999999999999999885     3333    35899999999999999999999999988       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 004811          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (729)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  424 (729)
                       +|....+++.+|.+|...|++++|+..|++++++.+........   .++..+  .      ..++..+.....   ..
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~---~~~~~~--~------~~~~~~~~~~~~---~~  132 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD---DIPSAL--R------IAKKKRWNSIEE---RR  132 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS---HHHHHH--H------HHHHHHHHHHHH---TC
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH---HHHHHH--H------HHHHHHHHHHHH---HH
Confidence             78889999999999999999999999999999999876432111   011111  1      111111111111   12


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004811          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRI  503 (729)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  503 (729)
                      ....+..   ...++.++  .|++++|++.++++++.        .|........++.++... +.+++|...|.++.+.
T Consensus       133 ~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          133 IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            2223332   33344443  68999999999999887        666677777777777766 6788898888887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.30  E-value=6.4e-11  Score=123.91  Aligned_cols=122  Identities=8%  Similarity=0.035  Sum_probs=113.7

Q ss_pred             HhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004811          528 ESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (729)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (729)
                      ...|+|++|+.++++++++.....|..+ ..+.++.+||.+|..+|+|++|+.++++++.+.....+..++..+..+++|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3568999999999999999998878765 778899999999999999999999999999999999888889999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (729)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (729)
                      |.+|..+|++++|+.+|++|+++....+|++||....+..+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999999999999999988777664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.30  E-value=7.8e-11  Score=102.95  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG----ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      .+..+..+|..++..|+|++|+..|++++++......    ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3566788999999999999999999999999432100    001224559999999999999999999999999998554


Q ss_pred             CCCCCChHHHHHHH----HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 004811          507 PVPGVPPEEIASGL----TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (729)
Q Consensus       507 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (729)
                      .  +.-.|....+|    +++|.++..+|++++|+..|++++++.|...+....+..+
T Consensus        90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3  23345567778    9999999999999999999999999999987766655444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.30  E-value=7.2e-12  Score=117.76  Aligned_cols=166  Identities=14%  Similarity=0.080  Sum_probs=121.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc-
Q 004811          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-  556 (729)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  556 (729)
                      ...+......|++++|...+......         .+..+..+..+|.++...|++++|+.+|.+++.+.+..+..... 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   78 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI   78 (198)
T ss_dssp             --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence            34455666677787777777655444         44567789999999999999999999999999987765322111 


Q ss_pred             --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          557 --------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (729)
Q Consensus       557 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (729)
                              ...++.++|.+|...|++++|+.++++++.+.        +....++..+|.++...|++++|+.+|++++.
T Consensus        79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                    13788999999999999999999999999872        22457899999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI-EILEFV  668 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  668 (729)
                      +        +|....++..++.++..+++..++. ..|.+.
T Consensus       151 ~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          151 L--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             H--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9        8888899999999999998887776 344433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.29  E-value=5.3e-11  Score=124.92  Aligned_cols=130  Identities=12%  Similarity=0.018  Sum_probs=120.4

Q ss_pred             HHHhcchHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 004811          526 IYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN  604 (729)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  604 (729)
                      -+..+|++++|+..+++++++.....+..+ ..+.++.++|.+|..+|+|++|+.++++++.+.....+..++..+..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            355789999999999999999887777665 7788999999999999999999999999999999998888899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (729)
                      +||.+|..+|++++|+.+|++|++++....|++||....++.+|+.+...+
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.29  E-value=3.7e-12  Score=136.30  Aligned_cols=161  Identities=16%  Similarity=0.190  Sum_probs=131.0

Q ss_pred             hcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-------CChHHHH
Q 004811          529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-------KSAFFGV  601 (729)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  601 (729)
                      .++++++|+..|+.++...+..       +..+..+|.+++..|+|++|+.+|++++.+.+.....       .......
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  318 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA  318 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence            4566777777777777766554       6788899999999999999999999999975432100       0112357


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      ++.++|.+|..+|++++|+.+|++++.+        +|....+++++|.+|..+|++++|+..|++++++        +|
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P  382 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP  382 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence            8999999999999999999999999999        8999999999999999999999999999999976        68


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (729)
                      ....++..|+.++...|++++|....+++++
T Consensus       383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          383 QNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999988745555444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.28  E-value=3.6e-11  Score=114.37  Aligned_cols=142  Identities=19%  Similarity=0.186  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (729)
Q Consensus       391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (729)
                      .+..++.+|.++...|++++|+..|++++      .  + ...++..+|.++...|++++|+.+|++++.+        .
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ------D--P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS------S--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc------C--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            34568899999999999999999999873      1  1 3568999999999999999999999999998        6


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-------CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-------PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (729)
                      |....++..+|.+|...|++++|+.+|++++++.....       .....+....++.++|.++...|++++|+.+|+++
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            88889999999999999999999999999999754310       00023455688999999999999999999999999


Q ss_pred             HHHHHh
Q 004811          544 LKIYND  549 (729)
Q Consensus       544 l~~~~~  549 (729)
                      +.+.+.
T Consensus       148 l~~~p~  153 (213)
T 1hh8_A          148 TSMKSE  153 (213)
T ss_dssp             HTTCCS
T ss_pred             HHcCcc
Confidence            987654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.27  E-value=5.7e-11  Score=104.76  Aligned_cols=104  Identities=11%  Similarity=0.080  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004811          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      +.....++.+|.++...|++++|+.+|++++..        +|....++..+|.+|..+|++++|+.+|++++.+     
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----   81 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----   81 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            445678899999999999999999999999999        8999999999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                         +|....+++.+|.+|...|++++|+ ..|++++.++|+
T Consensus        82 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  118 (142)
T 2xcb_A           82 ---DINEPRFPFHAAECHLQLGDLDGAE-SGFYSARALAAA  118 (142)
T ss_dssp             ---CTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHT
T ss_pred             ---CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence               5778889999999999999999999 999999999996

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.27  E-value=3.3e-11  Score=102.85  Aligned_cols=99  Identities=18%  Similarity=0.121  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      .++.+|.++...|++++|+..|++++..        +|....+++.+|.++...|++++|+..|++++++        +|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4678899999999999999999999999        8999999999999999999999999999999988        68


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +...++..||.+|...|++++|+ ..|+++++++|+
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~  117 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQ  117 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcC
Confidence            88899999999999999999999 999999999996

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.27  E-value=6.6e-11  Score=107.29  Aligned_cols=103  Identities=24%  Similarity=0.276  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                      ..+..+..+|.++...|++++|+.+|++++.+        +|....++..+|.+|..+|++++|+.+|++++.+      
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------   74 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV------   74 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence            45778999999999999999999999999999        8888999999999999999999999999999988      


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       678 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                        +|....+++.+|.+|...|++++|+ ..|++++.++|+
T Consensus        75 --~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  111 (164)
T 3sz7_A           75 --DPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGN  111 (164)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSS
T ss_pred             --CCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence              6888999999999999999999999 999999999998

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.26  E-value=6.3e-10  Score=111.52  Aligned_cols=256  Identities=11%  Similarity=-0.041  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENH  470 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~  470 (729)
                      ..++..+..+....+..++|+..+.+++.+      .|....+|+..+.++...| .+++++.++.+++..        +
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------n  119 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------N  119 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------C
Confidence            344555555566667778999999999865      6667789999999999999 599999999999987        8


Q ss_pred             hhHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHH--------HHHHHH
Q 004811          471 PAVASVFVRLADMYNRT-G-KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE--------QAIKLL  540 (729)
Q Consensus       471 ~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~  540 (729)
                      |....+|...+.++... + ++++++.++.++++.         ++....+|...+.+....|.++        ++++++
T Consensus       120 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~---------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~  190 (349)
T 3q7a_A          120 LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP---------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC  190 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS---------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence            99999999999999998 8 899999999999877         4555788999999999998888        999999


Q ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHc
Q 004811          541 QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR  613 (729)
Q Consensus       541 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  613 (729)
                      .++++..+..       ..+|+..+.++...+.       ++++++++.+++.+.        +....+|+.+..++...
T Consensus       191 ~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~  255 (349)
T 3q7a_A          191 NEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--------PHNVSAWNYLRGFLKHF  255 (349)
T ss_dssp             HHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhc
Confidence            9999987766       5789999999999887       789999999998862        22456788877787776


Q ss_pred             CCHHH------------HHH-HHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          614 YSINE------------AVE-LFEEARSILEQECGP-----YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       614 g~~~~------------A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      |+...            .+. .+......+......     ..+....++..||.+|...|+.++|.++++...+     
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-----  330 (349)
T 3q7a_A          256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-----  330 (349)
T ss_dssp             TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred             CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----
Confidence            65300            000 011112222222111     1245666899999999999999999999988764     


Q ss_pred             cCCCChhHHHHHHHHHH
Q 004811          676 LGTANPDVDDEKRRLAE  692 (729)
Q Consensus       676 ~g~~~p~~~~~~~~La~  692 (729)
                        ..+|-....+...+.
T Consensus       331 --~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          331 --EYDQMRAGYWEFRRR  345 (349)
T ss_dssp             --TTCGGGHHHHHHHHH
T ss_pred             --hhChHHHHHHHHHHH
Confidence              336766665555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.26  E-value=9.8e-11  Score=101.57  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=109.5

Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (729)
                      .+.....+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++..    
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----   79 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL----   79 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence            34667889999999999999999999999998752        123578999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                          .|....++..+|.++...|++++|+.+|++++.+        +|....++..++.++...|+
T Consensus        80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                7888889999999999999999999999999987        68888899999999998875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.24  E-value=1.7e-10  Score=101.70  Aligned_cols=108  Identities=10%  Similarity=0.024  Sum_probs=97.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      ...|.....++.+|.++...|++++|+.+|++++..        .|....+|..+|.++...|++++|+.+|++++.+  
T Consensus        12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   81 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--   81 (142)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            346777888999999999999999999999999998        7888999999999999999999999999999999  


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                             .|....+++.+|.++...|++++|+.+|++++.+.+..
T Consensus        82 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           82 -------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             -------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                   33345678999999999999999999999999998865

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.24  E-value=2.2e-10  Score=98.76  Aligned_cols=121  Identities=16%  Similarity=0.110  Sum_probs=108.2

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      .....+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.++++++..      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   75 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI------   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence            345678899999999999999999999999862        113578999999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCH
Q 004811          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV  700 (729)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~  700 (729)
                        .|....++..+|.++...|++++|+.+|++++.+        .|....++..++.++...|++
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence              7888889999999999999999999999999987        577788999999999999875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.23  E-value=2.7e-11  Score=111.44  Aligned_cols=125  Identities=10%  Similarity=0.108  Sum_probs=108.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (729)
Q Consensus       568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (729)
                      +...|++++|+..|++++...        +....++..+|.++...|++++|+.+|++++.+        .|....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence            456789999999999998862        123578999999999999999999999999998        6777889999


Q ss_pred             HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          648 LAGT-YDAIGRL--DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       648 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|.+ +...|++  ++|+.+|++++.+        +|....+++.+|.++...|++++|+ ..|++++.++|+
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  147 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCC
Confidence            9999 8899999  9999999999987        5778889999999999999999999 999999999997

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.23  E-value=1.5e-10  Score=104.94  Aligned_cols=108  Identities=16%  Similarity=0.156  Sum_probs=94.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      +..+..+..+..+|.+++..|++++|+.+|++++.+        .|....++..+|.+|...|++++|+.+|++++.+  
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--   74 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--   74 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence            345667788899999999999999999999999998        7888889999999999999999999999999998  


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                             .+....+++.+|.+|..+|++++|+.+|++++++.+..
T Consensus        75 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           75 -------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence                   34447789999999999999999999999999988765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.22  E-value=1.9e-10  Score=103.99  Aligned_cols=127  Identities=17%  Similarity=0.078  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAEVASVDCSIGDTYLSLSRYDEAGFAYQK  457 (729)
Q Consensus       390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  457 (729)
                      ..+..+..+|..++..|+|++|+..|.+++.+......            .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45677999999999999999999999999987543211            456678999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHH-HHHHHHHHHHHhcchH
Q 004811          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA-SGLTDVSSIYESMNEL  533 (729)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~  533 (729)
                      ++.+        +|....+++.+|.+|..+|++++|+..|++++.+         .|... .+...++.+....++.
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------HPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHHH
Confidence            9999        7889999999999999999999999999999999         33333 4455555555544433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.21  E-value=3.3e-10  Score=97.72  Aligned_cols=125  Identities=22%  Similarity=0.223  Sum_probs=110.5

Q ss_pred             ChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004811          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (729)
                      ..+.....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++...   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---   76 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICID---   76 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---
Confidence            356678899999999999999999999999999986544       5788999999999999999999999999862   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004811          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD  659 (729)
Q Consensus       592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  659 (729)
                           +....++..+|.++...|++++|+.+|++++..        .|....++..++.++..+|+++
T Consensus        77 -----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           77 -----PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred             -----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence                 113568899999999999999999999999999        7888889999999999998863

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=100.17  Aligned_cols=122  Identities=18%  Similarity=0.278  Sum_probs=86.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .+.....+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+    
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----   79 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL----   79 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence            4556667777777777777777777777777765        5556677777777777777777777777777776    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (729)
                           .+....++..+|.++...|++++|+.+|++++.+.+..       ..++..++.++..+|+
T Consensus        80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-------KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-------THHHHHHHHHHHHHTC
T ss_pred             -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcC
Confidence                 22235567777777777777777777777777765544       2456666777666553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.19  E-value=1.8e-10  Score=100.68  Aligned_cols=102  Identities=14%  Similarity=0.061  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      .+..+..+|.++...|++++|+.+|++++..        +|....++..+|.++..+|++++|+.+|++++.+       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3578899999999999999999999999999        8888899999999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                       +|....+++.+|.++...|++++|+ ..|++++.++|+
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~  109 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE  109 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHChh
Confidence             5888899999999999999999999 999999999997

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.18  E-value=9e-10  Score=93.96  Aligned_cols=117  Identities=23%  Similarity=0.412  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      ..++..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++..        
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            5678899999999999999999999998862        113468899999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                      .|....++..+|.++...|++++|+.+|++++.+        +|....++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence            7777889999999999999999999999999987        5777888999999988765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.17  E-value=8.8e-11  Score=125.63  Aligned_cols=161  Identities=12%  Similarity=0.149  Sum_probs=126.2

Q ss_pred             cccccccCcccccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHhHHHHHHHHHH
Q 004811          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIAA  273 (729)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~~~~la~  273 (729)
                      -.++..+++.+.......|..+..+..+|..++..|+ |++|+.+|.+|+.+.+......      ..+....++.++|.
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3445566656666666778899999999999999997 9999999999999864321000      01233688999999


Q ss_pred             HHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004811          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (729)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (729)
                      +|..+|+|++|+.+|++++.+.     +..    ..+++.+|.+|..+|++++|+.+|++++++        +|....++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~-----p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~  388 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLD-----SAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAAR  388 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-----Ccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            9999999999999999999986     333    346999999999999999999999999998        78888999


Q ss_pred             HHHHHHHHHhcCHHHHHH-HHHHHHH
Q 004811          354 RYLAEAHVQALQFSEAQK-FCQMALD  378 (729)
Q Consensus       354 ~~la~~~~~~g~~~~A~~-~~~~al~  378 (729)
                      ..++.++...+++++|.. .|.+++.
T Consensus       389 ~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          389 LQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988874 3444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.16  E-value=1.5e-10  Score=106.32  Aligned_cols=122  Identities=16%  Similarity=0.203  Sum_probs=104.6

Q ss_pred             HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004811          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (729)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (729)
                      +...|++++|+..+++++...+..       ..++..+|.+|...|++++|+.+|++++.+.+.        ...++..+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l   84 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--------NAELYAAL   84 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--------CHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CHHHHHHH
Confidence            345789999999999999886544       578899999999999999999999999987421        25688899


Q ss_pred             HHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          607 GLA-CVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       607 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      |.+ +...|++  ++|+.+|++++..        +|....++..+|.+|...|++++|+.+|++++.+
T Consensus        85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            999 8899999  9999999999999        8888899999999999999999999999999976

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.15  E-value=5e-10  Score=97.81  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004811          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (729)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (729)
                      .+..+..+|.++...|++++|+.+|++++.+.        +....++..+|.++...|++++|+.+|++++.+       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            35778999999999999999999999999872        223578999999999999999999999999999       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                       +|....+++.+|.+|..+|++++|+.+|++++.+..
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence             888899999999999999999999999999999864

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.14  E-value=2.6e-10  Score=117.95  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG--------ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (729)
                      ..+..+|..+...|++++|+.+|++++++.....        ....+....++.++|.+|..+|++++|+.+|++++++ 
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence            3456789999999999999999999999765421        0012345789999999999999999999999999998 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                             +|....+++.+|.+|..+|++++|+.+|++++++        .|....++..|+.++...++++++.
T Consensus       303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                   8889999999999999999999999999999987        5778889999999999999999887

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.14  E-value=2.1e-09  Score=105.50  Aligned_cols=257  Identities=11%  Similarity=0.037  Sum_probs=169.5

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004811          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (729)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (729)
                      .-.+..|+|..++.-..+      ..+..+.  .....+.++|..+|++....               .+.|. ..+...
T Consensus        21 kn~fy~G~yq~~i~e~~~------~~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~   76 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEK------FSKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL   76 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHT------SSCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHh------cCccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence            345678999988874322      1122233  34555677888888876421               11332 233444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 004811          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (729)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (729)
                      ++..+.  ++   |+..+++.+..      +...   ..++..+|.++...|++++|+.++.+.+...+     ......
T Consensus        77 la~~~~--~~---a~~~l~~l~~~------~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le  137 (310)
T 3mv2_B           77 YVQFLD--TK---NIEELENLLKD------KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE  137 (310)
T ss_dssp             HHHHHT--TT---CCHHHHHTTTT------SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred             HHHHhc--cc---HHHHHHHHHhc------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence            444442  22   66666665543      1111   23456899999999999999999999865322     123457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhcC
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM--GLACVQRY--SINEAVELFEEARSILEQECG  635 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~  635 (729)
                      ++..++.++..+|+.+.|.+.++++.+..+.    .......++..+  |++.+..|  ++.+|..+|+++...      
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d----~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~------  207 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNAIED----TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT------  207 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc----ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh------
Confidence            7788999999999999999999988665210    000011233444  44466666  999999999997665      


Q ss_pred             CCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811          636 PYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT--ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       636 ~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (729)
                        .|+  ....+++   ++..+|++++|...++.+++..-.+-..  .+|+.+.++.+++.+....|+  +|. ++++++
T Consensus       208 --~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l~~qL  279 (310)
T 3mv2_B          208 --FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DLTNQL  279 (310)
T ss_dssp             --SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HHHHHH
T ss_pred             --CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HHHHHH
Confidence              554  2223333   8999999999999999777653110000  036788899999999999998  888 999999


Q ss_pred             Hhhccc
Q 004811          712 LDANSR  717 (729)
Q Consensus       712 l~~~p~  717 (729)
                      .+.+|+
T Consensus       280 ~~~~P~  285 (310)
T 3mv2_B          280 VKLDHE  285 (310)
T ss_dssp             HHTTCC
T ss_pred             HHhCCC
Confidence            999997

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.13  E-value=1.5e-11  Score=132.22  Aligned_cols=176  Identities=16%  Similarity=0.121  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      ..+..+..+|.++...|++++|+.+|++++++.+..       ..++.++|.+|..+|++++|+.+|++++++.      
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------   70 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD------   70 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------
Confidence            445667788999999999999999999999986654       6789999999999999999999999999861      


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChHHHHHHHH------
Q 004811          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT--YDAIGRLDDAIEILE------  666 (729)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~------  666 (729)
                        +....++..+|.+|..+|++++|+.+|++++++        +|....++..++.+  +..+|++++|++.++      
T Consensus        71 --p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~  140 (477)
T 1wao_1           71 --KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  140 (477)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence              224678999999999999999999999999998        77777788888888  889999999999999      


Q ss_pred             -----HHHHHHHHHcCCCChh---HHHHHHHHHHHHHHhCCHhHHHH-HHHHHHHh
Q 004811          667 -----FVVGIREEKLGTANPD---VDDEKRRLAELLKEAGRVRSRKA-QSLETLLD  713 (729)
Q Consensus       667 -----~al~~~~~~~g~~~p~---~~~~~~~La~~~~~~g~~~~A~~-~~l~~al~  713 (729)
                           +++.+.....++.++.   ....+..+...+...+...+... ..+.++.+
T Consensus       141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e  196 (477)
T 1wao_1          141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKE  196 (477)
T ss_dssp             TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence                 6666554444555554   23344455555555555443321 34444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.12  E-value=4.7e-10  Score=95.57  Aligned_cols=100  Identities=13%  Similarity=0.038  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      .++.+|..+...|++++|+..|++++..        .|....+++.+|.++...|++++|+..|++++++         .
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C
Confidence            4678899999999999999999999998        8889999999999999999999999999999999         4


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                      |....++..+|.++...|++++|+..|++++++.|..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            4456789999999999999999999999999887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.11  E-value=1.7e-09  Score=91.20  Aligned_cols=113  Identities=18%  Similarity=0.135  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      +..+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.++++++..        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            4677889999999999999999999999862        113578999999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (729)
                      .|....++..+|.++...|++++|+.+|++++.+        +|....++..++.+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence            7888889999999999999999999999999965        577777888877764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.11  E-value=3.3e-09  Score=104.11  Aligned_cols=262  Identities=11%  Similarity=-0.012  Sum_probs=168.7

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004811          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (729)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (729)
                      -.+..|+|..++.-..   ++.+.    . ..  .....+.+.|..+|++....             ...+. ..+...+
T Consensus        22 n~fy~G~yq~~i~e~~---~~~~~----~-~~--~~~~~~~Rs~iAlg~~~~~~-------------~~~~~-~~a~~~l   77 (310)
T 3mv2_B           22 QNYYTGNFVQCLQEIE---KFSKV----T-DN--TLLFYKAKTLLALGQYQSQD-------------PTSKL-GKVLDLY   77 (310)
T ss_dssp             HHHTTTCHHHHTHHHH---TSSCC----C-CH--HHHHHHHHHHHHTTCCCCCC-------------SSSTT-HHHHHHH
T ss_pred             HHHHhhHHHHHHHHHH---hcCcc----c-hH--HHHHHHHHHHHHcCCCccCC-------------CCCHH-HHHHHHH
Confidence            3556899988887332   22211    1 11  34666778888888876421             22332 2233333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (729)
                      +..+ . ++   |+..+++.+..        .+....++..+|.++...|++++|+.++.+++..      +. ......
T Consensus        78 a~~~-~-~~---a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~-~~~~le  137 (310)
T 3mv2_B           78 VQFL-D-TK---NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDN------DE-AEGTTE  137 (310)
T ss_dssp             HHHH-T-TT---CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SC-STTHHH
T ss_pred             HHHh-c-cc---HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CC-CcCcHH
Confidence            4333 2 22   66666665543        1222445579999999999999999999998665      11 134577


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhCCC
Q 004811          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLG--NYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      ++..++.++..+|+.+.|.+.++++.+..++..   ...-.++..+  +++.+..|  ++.+|..+|+++.+..      
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~---~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------  208 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV---SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------  208 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc---ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------
Confidence            888999999999999999999999877754100   0001233344  44466667  9999999999975531      


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY--HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      ........+.+   ++..+|++++|...++.+++..-.....+  +|+...++.+++.+...+|+  +|.++++++.+..
T Consensus       209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            11111223333   89999999999999997776532210000  26678888999999999997  8899999888763


Q ss_pred             HHHcCCCChhH
Q 004811          673 EEKLGTANPDV  683 (729)
Q Consensus       673 ~~~~g~~~p~~  683 (729)
                           |+||..
T Consensus       284 -----P~hp~i  289 (310)
T 3mv2_B          284 -----HEHAFI  289 (310)
T ss_dssp             -----CCCHHH
T ss_pred             -----CCChHH
Confidence                 555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.11  E-value=2e-09  Score=92.69  Aligned_cols=100  Identities=17%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (729)
                      .++.+|.++...|++++|+..|++++...     +.......++..+|.++...|++++|+.+|++++..        +|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p   70 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--------YP   70 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------CC
Confidence            45788999999999999999999998863     223334578999999999999999999999999998        55


Q ss_pred             hH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          640 DT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       640 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      +.   ..+++.+|.+|..+|++++|+.+|++++...
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            55   8899999999999999999999999999873

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.10  E-value=5.1e-08  Score=104.70  Aligned_cols=369  Identities=9%  Similarity=-0.009  Sum_probs=225.3

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHH
Q 004811          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (729)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  316 (729)
                      +...|...|++++..++         .               |+++.+..+|++++...     +     ...+|.....
T Consensus        10 ~i~~aR~vyer~l~~~P---------~---------------~~~e~~~~iferal~~~-----p-----s~~LW~~Y~~   55 (493)
T 2uy1_A           10 ELSSPSAIMEHARRLYM---------S---------------KDYRSLESLFGRCLKKS-----Y-----NLDLWMLYIE   55 (493)
T ss_dssp             --CCHHHHHHHHHHHHH---------T---------------TCHHHHHHHHHHHSTTC-----C-----CHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHCC---------C---------------CCHHHHHHHHHHHhccC-----C-----CHHHHHHHHH
Confidence            37788888888888873         2               88999999999999864     2     1223555555


Q ss_pred             HHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004811          317 TYAMLGQ-LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----QALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (729)
Q Consensus       317 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (729)
                      .....+. .+.....|+.++...    |. ++.....|...+..+.    ..++.+.+...|++++.. |..    ..  
T Consensus        56 f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~~--  123 (493)
T 2uy1_A           56 YVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----SL--  123 (493)
T ss_dssp             HHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----TH--
T ss_pred             HHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----hH--
Confidence            4444443 345666777777652    22 3455577777666543    357788999999999974 211    11  


Q ss_pred             HHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC---------HH
Q 004811          392 AADRRLMGLI-------------CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR---------YD  449 (729)
Q Consensus       392 a~~~~~lg~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~  449 (729)
                      ...|......             -.....+..|...|..+.......  .   ...|......  ..++         ..
T Consensus       124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~--s---~~~W~~y~~~--E~~~~~~~~~~~~~~  196 (493)
T 2uy1_A          124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW--S---VKNAARLIDL--EMENGMKLGGRPHES  196 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--S---HHHHHHHHHH--HHTCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc--c---HHHHHHHHHH--HhcCCccCcchhhHH
Confidence            1111111111             112234445555555554433221  1   1233332222  2222         34


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 004811          450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES  529 (729)
Q Consensus       450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  529 (729)
                      .....|++++..        .|....+|...+..+...|+.++|...|++|+.. ...     .    ..+...+... .
T Consensus       197 Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~~y~~~~-e  257 (493)
T 2uy1_A          197 RMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSLYYGLVM-D  257 (493)
T ss_dssp             HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHHHHHhhc-c
Confidence            567788888887        5677889999999999999999999999999998 431     1    1222222221 1


Q ss_pred             cchHHHHHHHHHHHHHHH---HhCCC---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 004811          530 MNELEQAIKLLQKALKIY---NDAPG---QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (729)
Q Consensus       530 ~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (729)
                      .++   .   ++......   ....+   .......+|...+......++.+.|...|++| ..    .. .   ...+|
T Consensus       258 ~~~---~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~-~---~~~v~  322 (493)
T 2uy1_A          258 EEA---V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EG-V---GPHVF  322 (493)
T ss_dssp             CTH---H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SC-C---CHHHH
T ss_pred             hhH---H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CC-C---ChHHH
Confidence            111   1   22222111   10000   01122356777788887888999999999988 21    11 1   12455


Q ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          604 NQMGLACVQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       604 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      ...|.+....+ +.+.|...|+.+++.        .|+....+...+......|+.+.|..+|+++.            .
T Consensus       323 i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------------k  382 (493)
T 2uy1_A          323 IYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRLE------------K  382 (493)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------------C
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------H
Confidence            55566666555 699999999999987        34444455667778888999999999999872            1


Q ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                      ....+......-...|+.+.+. ..+++++.
T Consensus       383 ~~~lw~~~~~fE~~~G~~~~~r-~v~~~~~~  412 (493)
T 2uy1_A          383 TSRMWDSMIEYEFMVGSMELFR-ELVDQKMD  412 (493)
T ss_dssp             BHHHHHHHHHHHHHHSCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence            3456666777777889999988 88888875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.10  E-value=2e-09  Score=91.71  Aligned_cols=118  Identities=27%  Similarity=0.396  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004811          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      ...++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...      
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------   73 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------   73 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence            3567788888899999999999999988887        56667788889999999999999999999988872      


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG  572 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  572 (729)
                         +....++..+|.++...|++++|+.++++++.+.+..       ..++..++.++...|
T Consensus        74 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           74 ---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHC
T ss_pred             ---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHhcc
Confidence               2235677888999999999999999999888876544       356667777766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.09  E-value=1.3e-10  Score=126.89  Aligned_cols=191  Identities=10%  Similarity=0.053  Sum_probs=163.8

Q ss_pred             HcCC-HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHhCCCCC
Q 004811          486 RTGK-LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE----------LEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       486 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      ..|+ .++|+..+.+++.+         .|....+|+..+.++...|+          +++++.++++++...++.    
T Consensus        40 ~~~~~~eeal~~~~~~l~~---------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----  106 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA---------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----  106 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred             HcCCCCHHHHHHHHHHHHH---------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence            3444 46789999999999         56668899999999999998          999999999999988777    


Q ss_pred             CcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004811          555 STVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-SINEAVELFEEARSILE  631 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  631 (729)
                         ..+|+..+.++...+  ++++|+.++.+++++-        +....+|...+.++...| .++++++++.++++.  
T Consensus       107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--  173 (567)
T 1dce_A          107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (567)
T ss_dssp             ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence               588999999999999  7799999999999972        224578999999999999 899999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811          632 QECGPYHPDTLGVYSNLAGTYDAI--------------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (729)
                            +|....+|..++.++..+              +.+++|++++.+++.+        +|+...+|+.++.++...
T Consensus       174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred             ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence                  899999999999999885              5679999999999987        688889999999999999


Q ss_pred             CCHhH------------HHHHHHHHHHhhccc
Q 004811          698 GRVRS------------RKAQSLETLLDANSR  717 (729)
Q Consensus       698 g~~~~------------A~~~~l~~al~~~p~  717 (729)
                      +++++            |+ ..|.+++.++|.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~-~~f~~~i~~~~~  270 (567)
T 1dce_A          240 EPHDVLCCVHVSREEACLS-VCFSRPLTVGSR  270 (567)
T ss_dssp             CCCSCEEEEEEETTTTEEE-EEEEEEECTTBT
T ss_pred             CCccceeeeeeccCCceEE-EEeccceecccc
Confidence            88666            44 445666666653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.09  E-value=1.5e-10  Score=118.58  Aligned_cols=142  Identities=11%  Similarity=0.082  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE--RK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      ..+..+|..++..|+|++|+.+|++++.+......  ..       ......++.++|.+|..+|++++|+.+|++++.+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44667899999999999999999999987432100  00       0001138899999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH-HHhCCHhHHHHHHH
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVRSRKAQSL  708 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~-~~~g~~~~A~~~~l  708 (729)
                              +|....+++++|.+|..+|++++|+.+|++++++        +|....++..|+.+. ...+..+++. ..|
T Consensus       260 --------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~-~~~  322 (338)
T 2if4_A          260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK-EMY  322 (338)
T ss_dssp             --------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                    8999999999999999999999999999999976        577888899999884 4556677777 999


Q ss_pred             HHHHhhccc
Q 004811          709 ETLLDANSR  717 (729)
Q Consensus       709 ~~al~~~p~  717 (729)
                      .+++...|+
T Consensus       323 ~~~l~~~p~  331 (338)
T 2if4_A          323 KGIFKGKDE  331 (338)
T ss_dssp             ---------
T ss_pred             HHhhCCCCC
Confidence            999999987

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=1.6e-09  Score=91.39  Aligned_cols=101  Identities=24%  Similarity=0.275  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      +..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            467889999999999999999999999998        7888889999999999999999999999999987        


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .|....++..+|.++...|++++|. ..|+++++.+|+
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~  104 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEAN  104 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCC
Confidence            5777889999999999999999999 999999999997

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.09  E-value=1.2e-09  Score=112.98  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAN----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (729)
                      ..+..+|..+...|++++|+..|++++.+....          ...+....++.++|.+|..+|++++|+.++++++++ 
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence            457889999999999999999999999865442          145677889999999999999999999999999997 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHH
Q 004811          463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (729)
Q Consensus       463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (729)
                             .|....+++.+|.+|..+|++++|+.+|++++++         .|....++..++.++...++++++...
T Consensus       303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---------~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   7888999999999999999999999999999999         333466788899999999988887643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.08  E-value=8.2e-10  Score=95.23  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      .++.+|.++...|++++|+..|++++..     .++++....+++.+|.++...|++++|+.+|++++...     +.++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence            4678899999999999999999999987     23344444799999999999999999999999999863     4444


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ....+++.+|.++...|++++|+ ..|++++..+|+
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~  108 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQYPG  108 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCC
Confidence            44889999999999999999999 999999999997

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.07  E-value=2.9e-11  Score=129.91  Aligned_cols=134  Identities=16%  Similarity=0.150  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      ..+..+|.++...|++++|+.+|++++++.        +....++..+|.+|..+|++++|+.+|++++++        +
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~   70 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   70 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence            345567888999999999999999999972        224689999999999999999999999999998        8


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH--HHHhCCHhHHHHHHHH-------
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL--LKEAGRVRSRKAQSLE-------  709 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~--~~~~g~~~~A~~~~l~-------  709 (729)
                      |....+++++|.+|..+|++++|+.+|++++++        +|....++..++.+  +...|++++|+ ..++       
T Consensus        71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~~~~~~~~  141 (477)
T 1wao_1           71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSVVD  141 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC-------CCSTTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHh-ccccccchhHh
Confidence            899999999999999999999999999999987        56666778888888  88999999999 9999       


Q ss_pred             ----HHHhhccc
Q 004811          710 ----TLLDANSR  717 (729)
Q Consensus       710 ----~al~~~p~  717 (729)
                          +++.++|+
T Consensus       142 ~~~~~al~~~~~  153 (477)
T 1wao_1          142 SLDIESMTIEDE  153 (477)
T ss_dssp             CCTTSSCCCCTT
T ss_pred             hhhhhhcccccc
Confidence                77777776

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.06  E-value=2.3e-09  Score=92.36  Aligned_cols=123  Identities=14%  Similarity=0.109  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      +..+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++....... ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~   74 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-hh
Confidence            5678899999999999999999999999862        12357889999999999999999999999999844321 11


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                      .+....++..+|.+|...|++++|+.+|++++.+        .| .......++.++...+
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHH
Confidence            2222779999999999999999999999999986        34 2556666776665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=2.2e-09  Score=94.86  Aligned_cols=119  Identities=13%  Similarity=0.133  Sum_probs=101.9

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      .....+..+|..+...|++++|+.+|++++.+.     ........++..+|.++...|++++|+.+|++++.+      
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   94 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------   94 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence            346778899999999999999999999998752     122223688999999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (729)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (729)
                        +|....+++.+|.+|..+|++++|+.+|++++.+        +|....++..++.+..
T Consensus        95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG  144 (148)
T ss_dssp             --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred             --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence              7888889999999999999999999999999987        5666677777776653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.04  E-value=2.8e-09  Score=91.75  Aligned_cols=109  Identities=12%  Similarity=0.229  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      .+..+..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+.... +.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            3567889999999999999999999999998        78888899999999999999999999999999885321 12


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..+....+++.+|.++...|++++|. ..|++++..+|+
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~  111 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRT  111 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence            22233889999999999999999999 999999999886

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.02  E-value=2.6e-09  Score=116.65  Aligned_cols=177  Identities=9%  Similarity=0.017  Sum_probs=155.5

Q ss_pred             HcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCCCC
Q 004811          444 SLSR-YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       444 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      ..|+ .++|+..+.+++.+        +|....+|+..+.++...|+          +++++.++++++..         
T Consensus        40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------  102 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------  102 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence            3444 46789999999999        89999999999999999998          99999999999998         


Q ss_pred             hHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004811          513 PEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLR  589 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  589 (729)
                      .|....+|...+.++...+  ++++|+.++.+++++.++.       ..+|...+.++...| .++++++++.++++.  
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--  173 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence            5556789999999999999  7799999999999998776       588999999999999 899999999998875  


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          590 AIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (729)
                            .+....+|+.++.++...              +.+++|++++.+|+.+        +|+...+|+.++.++...
T Consensus       174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred             ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence                  222457899999888875              5689999999999999        899999999999999999


Q ss_pred             CChHH
Q 004811          656 GRLDD  660 (729)
Q Consensus       656 g~~~~  660 (729)
                      +++++
T Consensus       240 ~~~~~  244 (567)
T 1dce_A          240 EPHDV  244 (567)
T ss_dssp             CCCSC
T ss_pred             CCccc
Confidence            88665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.02  E-value=7.8e-10  Score=92.37  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      ..++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++++        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            356788999999999999999999999998        7888889999999999999999999999999976        


Q ss_pred             Chh--HHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHhhccc
Q 004811          680 NPD--VDDEKRRLAELLKEA-GRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~--~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~~p~  717 (729)
                      .|.  ...++..+|.++... |++++|+ ..++.++...|.
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~  109 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHH  109 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCC
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccC
Confidence            466  788999999999999 9999999 999999999886

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.8e-09  Score=94.20  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      ....+..+|..+...|++++|+.+|++++..        .|+.   ..++..+|.+|...|++++|+.+|++++.+    
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            4678899999999999999999999999987        5654   789999999999999999999999999987    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                          +|....+++.+|.++...|++++|. ..|++++.++|+
T Consensus        95 ----~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~  131 (148)
T 2dba_A           95 ----DGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPK  131 (148)
T ss_dssp             ----TSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSS
T ss_pred             ----CccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence                5777889999999999999999999 999999999997

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.97  E-value=8.5e-10  Score=96.17  Aligned_cols=89  Identities=12%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHHcCCCCh
Q 004811          612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL----------DDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      +.+.+++|+..|++++++        +|....++.++|.++..++++          ++|+..|++++++        +|
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            456789999999999999        999999999999999999876          5999999999998        79


Q ss_pred             hHHHHHHHHHHHHHHhC-----------CHhHHHHHHHHHHHhhccc
Q 004811          682 DVDDEKRRLAELLKEAG-----------RVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g-----------~~~~A~~~~l~~al~~~p~  717 (729)
                      +...++++||.+|..+|           ++++|+ .+|++|++++|+
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~-~~~~kAl~l~P~  123 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT-QFFQQAVDEQPD  123 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH-HHHHHHHHhCCC
Confidence            99999999999999885           899999 999999999998

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.96  E-value=1.3e-09  Score=92.19  Aligned_cols=92  Identities=22%  Similarity=0.203  Sum_probs=80.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 004811          612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA  691 (729)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La  691 (729)
                      .+|++++|+.+|++++++     +.++|....++..+|.+|..+|++++|+.+|++++++        +|+...+++.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            368899999999999986     1224888899999999999999999999999999987        688889999999


Q ss_pred             HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .++...|++++|+ ..|++++..+|+
T Consensus        69 ~~~~~~g~~~~A~-~~~~~al~~~p~   93 (117)
T 3k9i_A           69 MVLYNLGRYEQGV-ELLLKIIAETSD   93 (117)
T ss_dssp             HHHHHHTCHHHHH-HHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            9999999999999 999999999886

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.96  E-value=1e-09  Score=112.27  Aligned_cols=98  Identities=14%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      .++.++|.+|..+|++++|+.+|++++++         .+....+++++|.+|..+|++++|+.+|++++++.+..    
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~----  297 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTE---------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD----  297 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----
Confidence            48899999999999999999999999998         34457889999999999999999999999999988765    


Q ss_pred             CcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 004811          555 STVAGIEAQMGVM-YYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       555 ~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~  588 (729)
                         ..++..++.+ ....+..+++...|.+++...
T Consensus       298 ---~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          298 ---KAIRRELRALAEQEKALYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             -----------------------------------
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence               3455667776 345567788888888887764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.95  E-value=2.3e-09  Score=90.69  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (729)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (729)
                      .+|++++|+.+|++++++.     ...+....++..+|.+|...|++++|+.+|++++++        +|+...+++.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            4689999999999999851     112446789999999999999999999999999999        888899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHH
Q 004811          650 GTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      .++..+|++++|+.+|++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999874

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.87  E-value=1.9e-09  Score=89.94  Aligned_cols=102  Identities=11%  Similarity=0.038  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      ..++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|+++++....     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----   72 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----   72 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----
Confidence            456788999999999999999999999988        6677788999999999999999999999999987211     


Q ss_pred             ChHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Q 004811          512 PPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYN  548 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~  548 (729)
                        .....++..+|.++... |++++|+.++++++...+
T Consensus        73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           73 --EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             --TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             --cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence              01466889999999999 999999999999887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.85  E-value=6.9e-09  Score=90.40  Aligned_cols=91  Identities=15%  Similarity=0.213  Sum_probs=81.5

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcCCCCCC
Q 004811          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL----------RESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      .+.+.|++|+..+++++++        +|..+.+|+++|.++...+++          ++|+..|++++++         
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------   75 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------   75 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------
Confidence            3557789999999999999        899999999999999999876          5999999999999         


Q ss_pred             hHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~  550 (729)
                      .|....+|+++|.+|..+|           ++++|+.+|++|+++.|+.
T Consensus        76 dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           76 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            5666889999999999885           8999999999999997764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.83  E-value=1.1e-06  Score=94.33  Aligned_cols=343  Identities=10%  Similarity=-0.025  Sum_probs=198.7

Q ss_pred             HcC-ChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004811          277 SLG-QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (729)
Q Consensus       277 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (729)
                      ..| ++..|...|++++...+                        .|+++.+..+|++++..        .| ....|..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P------------------------~~~~e~~~~iferal~~--------~p-s~~LW~~   52 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYM------------------------SKDYRSLESLFGRCLKK--------SY-NLDLWML   52 (493)
T ss_dssp             ------CCHHHHHHHHHHHHH------------------------TTCHHHHHHHHHHHSTT--------CC-CHHHHHH
T ss_pred             HcCcchHHHHHHHHHHHHHCC------------------------CCCHHHHHHHHHHHhcc--------CC-CHHHHHH
Confidence            356 48888899998887651                        17899999999999986        35 4456666


Q ss_pred             HHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHhCCCChh
Q 004811          356 LAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAE  430 (729)
Q Consensus       356 la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (729)
                      ........+. .+.....|+.++.......  ..   ..+|......+.    ..++.+.+...|++|+..    + ...
T Consensus        53 Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s---~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P-~~~  122 (493)
T 2uy1_A           53 YIEYVRKVSQKKFKLYEVYEFTLGQFENYW--DS---YGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----P-MGS  122 (493)
T ss_dssp             HHHHHHHHC----CTHHHHHHHHHHSTTCT--TC---HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----C-CTT
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHcCCCc--cc---HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----h-hhh
Confidence            6666655553 3556677888877543222  11   133444444432    346788899999999752    1 111


Q ss_pred             HHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--CC-----H
Q 004811          431 VASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT--GK-----L  490 (729)
Q Consensus       431 ~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~-----~  490 (729)
                      ....|......-             .....+..|...|+.+......       .....|..+...-...  +-     .
T Consensus       123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~-------~s~~~W~~y~~~E~~~~~~~~~~~~~  195 (493)
T 2uy1_A          123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG-------WSVKNAARLIDLEMENGMKLGGRPHE  195 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhcCCccCcchhhH
Confidence            122222111111             1122344445555554443211       0122444433332211  11     3


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 004811          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (729)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (729)
                      ......|++++....         ....+|...+..+...|+.++|...|++|+.. |...       .++...+..   
T Consensus       196 ~Rv~~~ye~al~~~p---------~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-------~l~~~y~~~---  255 (493)
T 2uy1_A          196 SRMHFIHNYILDSFY---------YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-------FLSLYYGLV---  255 (493)
T ss_dssp             HHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-------HHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-------HHHHHHHhh---
Confidence            456788999988732         23667888899999999999999999999998 5431       122222221   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhC-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          571 LGNYSDSYDSFKNAISKLRAIG-----ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (729)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (729)
                       .+.++.   +++..+......     .........+|...+..+.+.++.+.|...|++| ..        .+....++
T Consensus       256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--------~~~~~~v~  322 (493)
T 2uy1_A          256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--------EGVGPHVF  322 (493)
T ss_dssp             -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------SCCCHHHH
T ss_pred             -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------CCCChHHH
Confidence             111111   222222110000     0011223466777888888888899999999998 32        11233466


Q ss_pred             HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 004811          646 SNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (729)
Q Consensus       646 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (729)
                      ...|.+....+ +.+.|...|+.+++.+     ++.|   ..+...+......|+.+.|. ..|+.+
T Consensus       323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~---~~~~~yid~e~~~~~~~~aR-~l~er~  380 (493)
T 2uy1_A          323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST---LLKEEFFLFLLRIGDEENAR-ALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCHHHHH-HHHHHS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence            66676666656 6999999999999853     3334   44555677888899999988 777765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.83  E-value=4.1e-08  Score=78.32  Aligned_cols=85  Identities=24%  Similarity=0.403  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004811          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (729)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (729)
                      ....++..+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+|++++.+      
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------   72 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------   72 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            35678999999999999999999999999998        7888889999999999999999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHhC
Q 004811          678 TANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       678 ~~~p~~~~~~~~La~~~~~~g  698 (729)
                        +|....++..+|.++...|
T Consensus        73 --~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 --DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --CTTCHHHHHHHHHHHHHHC
T ss_pred             --CCCCHHHHHHHHHHHHhcC
Confidence              5788889999999998765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.9e-08  Score=83.80  Aligned_cols=93  Identities=17%  Similarity=0.153  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      +..+..+|.++...|++++|+.+|++++.+        +|....++.++|.+|..+|++++|+..|++++.+        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            467889999999999999999999999999        8888899999999999999999999999999976        


Q ss_pred             ChhH------HHHHHHHHHHHHHhCCHhHHHHHHHH
Q 004811          680 NPDV------DDEKRRLAELLKEAGRVRSRKAQSLE  709 (729)
Q Consensus       680 ~p~~------~~~~~~La~~~~~~g~~~~A~~~~l~  709 (729)
                      +|..      ..+++.+|.++...|+++.|+ ..++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~  102 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV-VEVD  102 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS-SSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH-hHHH
Confidence            4555      788999999999999988887 5443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.70  E-value=5.7e-08  Score=81.61  Aligned_cols=83  Identities=20%  Similarity=0.231  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811          618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (729)
                      +|+..|++++..        +|....+++.+|.+|...|++++|+.+|++++.+        +|....+++.+|.+|...
T Consensus         3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence            578889998887        7888899999999999999999999999999987        678888999999999999


Q ss_pred             CCHhHHHHHHHHHHHhhccc
Q 004811          698 GRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       698 g~~~~A~~~~l~~al~~~p~  717 (729)
                      |++++|+ ..|++++.++|.
T Consensus        67 g~~~~A~-~~~~~al~~~~~   85 (115)
T 2kat_A           67 GDRAGAR-QAWESGLAAAQS   85 (115)
T ss_dssp             TCHHHHH-HHHHHHHHHHHH
T ss_pred             CCHHHHH-HHHHHHHHhccc
Confidence            9999999 999999999986

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.69  E-value=1.4e-07  Score=79.27  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004811          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (729)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (729)
                      ++|+..|++++...     +.++    .+++.+|.+|...|++++|+.+|++++.+        +|....++..+|.+|.
T Consensus         2 ~~a~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQG-----TDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTTT-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence            46889999999875     4433    35899999999999999999999999998        7888999999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCC
Q 004811          362 QALQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~  385 (729)
                      ..|++++|+..|++++.+.+....
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999887653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.66  E-value=2.2e-07  Score=73.94  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=71.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      .+....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+    
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   72 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----   72 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3455678888999999999999999999999987        6777888999999999999999999999999988    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcc
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMN  531 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g  531 (729)
                           .|....++..+|.++...|
T Consensus        73 -----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 -----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHC
T ss_pred             -----CCCCHHHHHHHHHHHHhcC
Confidence                 3334567888888877654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.62  E-value=1.7e-08  Score=84.09  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004811          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (729)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (729)
                      +..+..+|.++...|++++|+..|++++.+        .|....++.++|.++...|++++|+..|++++.+....   .
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~   72 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA---E   72 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST---T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---c
Confidence            467889999999999999999999999998        78888999999999999999999999999999884321   1


Q ss_pred             ChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004811          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (729)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (729)
                      +......++..+|.++...|+++.|+..++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            223346788899999998888777665443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.56  E-value=5.9e-07  Score=78.10  Aligned_cols=110  Identities=14%  Similarity=0.105  Sum_probs=93.5

Q ss_pred             chHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 004811          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (729)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (729)
                      +++++|+.+|+++.+..     ...    +.  +|.+|...+.+++|+.+|+++.+.          ....+++++|.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence            57899999999998753     221    22  899999999999999999999874          1357899999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004811          611 VQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGI  671 (729)
Q Consensus       611 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  671 (729)
                      ..    .+++++|+.+|+++.+.          ....++++||.+|..    .+++++|+.+|+++.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            98    89999999999999875          335688999999999    99999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.56  E-value=3.4e-07  Score=74.57  Aligned_cols=87  Identities=22%  Similarity=0.324  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      ...++..+|.++...|++++|+.+|++++++        +|....+++.+|.+|..+|++++|+..|++++++....   
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~---   74 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE---   74 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC---
Confidence            3578999999999999999999999999999        88888899999999999999999999999999885331   


Q ss_pred             CChhHHHHHHHHHHHHHHhCC
Q 004811          679 ANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~  699 (729)
                         ........+..++...+.
T Consensus        75 ---~~~~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           75 ---GTQKDLSELQDAKLKAEG   92 (100)
T ss_dssp             ---SCHHHHHHHHHHHHHHHT
T ss_pred             ---CchhHHHHHHHHHHHccc
Confidence               123344455555544443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.56  E-value=1.3e-07  Score=76.93  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      ..+|.++...|++++|+..|+++++.        +|.... +++.+|.+|..+|++++|+.+|++++.+        +|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            45788999999999999999999998        888888 9999999999999999999999999987        466


Q ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...++.+        +.+.++. ..|++++..+|+
T Consensus        68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~   93 (99)
T 2kc7_A           68 SPALQAR--------KMVMDIL-NFYNKDMYNQLE   93 (99)
T ss_dssp             STHHHHH--------HHHHHHH-HHHCCTTHHHHC
T ss_pred             cHHHHHH--------HHHHHHH-HHHHHHhccCcc
Confidence            5555533        5667888 888888888887

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.55  E-value=1.8e-07  Score=76.18  Aligned_cols=71  Identities=15%  Similarity=0.151  Sum_probs=65.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|+...+++.+|.+|..+|++++|+.+|++++++        +|....+++.+|.+|...|++++|+ ..|++++++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhhc
Confidence            5777889999999999999999999999999987        6888889999999999999999999 999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.48  E-value=6.4e-07  Score=77.89  Aligned_cols=108  Identities=17%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004811          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (729)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (729)
                      +++|+.+|++|.+.      +.+     .+.  +|.+|...+.+++|+.+|+++.+..           ...+++.||.+
T Consensus        11 ~~~A~~~~~~aa~~------g~~-----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----------~~~a~~~Lg~~   66 (138)
T 1klx_A           11 LKKAIQYYVKACEL------NEM-----FGC--LSLVSNSQINKQKLFQYLSKACELN-----------SGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHT------TCT-----THH--HHHHTCTTSCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC------CCH-----hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-----------CHHHHHHHHHH
Confidence            88999999999864      222     223  8999999999999999999998763           23458999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 004811          318 YAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDI  379 (729)
Q Consensus       318 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  379 (729)
                      |..    .+++++|+.+|+++.+.          ....+++.||.+|..    .+++++|+.+|+++.+.
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            999    89999999999999876          346789999999999    89999999999999876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.40  E-value=1.1e-06  Score=71.12  Aligned_cols=90  Identities=9%  Similarity=0.138  Sum_probs=75.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (729)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (729)
                      +.+|.++...|++++|+..|++++..        .|.... ++..+|.+|...|++++|+.+|++++.+...        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--------   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Confidence            56788999999999999999999998        677788 9999999999999999999999999999322        


Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                       ...++..        +.+.+++.+|++++...+..
T Consensus        68 -~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           68 -SPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -STHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             -cHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence             2223321        67888889998888887765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.32  E-value=0.00073  Score=68.72  Aligned_cols=214  Identities=13%  Similarity=0.081  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      +...||.+|...|++++-..++......+....   ....+.....+-..+.. -+..+.-+..+.++++.....   ..
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~r   94 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---KR   94 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---TC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HH
Confidence            456778888888888877777766554432221   22333334444444433 344566677777777776541   11


Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      ..-....-..||.+|...|+|.+|.+.+.+.++.+... ++...+..++.....+|...+++.++...+.+|......+.
T Consensus        95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A           95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence            11112234489999999999999999999999988775 45567778888899999999999999999999998876653


Q ss_pred             CCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004811          593 ERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL  658 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  658 (729)
                       .++...+.....-|.++. ..++|..|..+|-++..-+...   ..|....+...++.+-...++.
T Consensus       174 -~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          174 -CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred             -CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence             344556777778899999 8999999999999998665432   2354444555555555555553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.26  E-value=9.8e-06  Score=77.34  Aligned_cols=85  Identities=20%  Similarity=0.262  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHHcCCCChhH-HHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAI-----GRLDDAIEILEFVVGIREEKLGTANPDV-DDEK  687 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~g~~~p~~-~~~~  687 (729)
                      ...|...+++++++        +|.  ...++..||.+|...     |+.++|..+|++++++        +|+. ..++
T Consensus       179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~  242 (301)
T 3u64_A          179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHH  242 (301)
T ss_dssp             HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHH
T ss_pred             HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHH
Confidence            67899999999999        888  455999999999995     9999999999999998        6865 8899


Q ss_pred             HHHHHHHHH-hCCHhHHHHHHHHHHHhhccc
Q 004811          688 RRLAELLKE-AGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       688 ~~La~~~~~-~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +.+|..+.. .|++++|. ..|++++..+|.
T Consensus       243 v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~  272 (301)
T 3u64_A          243 ITYADALCIPLNNRAGFD-EALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHTTTTTTCHHHHH-HHHHHHHHCCGG
T ss_pred             HHHHHHHHHhcCCHHHHH-HHHHHHHcCCCC
Confidence            999999988 49999999 999999999987

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.18  E-value=0.0005  Score=69.89  Aligned_cols=212  Identities=15%  Similarity=0.102  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004811          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHP  471 (729)
Q Consensus       393 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (729)
                      .+...||.+|...|++++-.+++......+.... ....+.+...+-..+.. -+..+.-++.+..+++-++..    ..
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r   94 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KR   94 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HH
Confidence            3478899999999999999988876543332221 12233333444444433 355666677777777765532    12


Q ss_pred             hHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q 004811          472 AVAS--VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (729)
Q Consensus       472 ~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (729)
                      ....  .-..+|.+|+..|+|.+|...+.+.++-+.+.   ++......++..-..+|...+++.++..++.+|......
T Consensus        95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A           95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            2222  44589999999999999999999999988773   345678888999999999999999999999999998876


Q ss_pred             CCCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCC
Q 004811          550 APGQQSTVAGIEAQMGVMYY-MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (729)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  615 (729)
                      .+.++...+.+...-|.++. ..++|..|..+|-++..-+...+   .+....++..++.+-...++
T Consensus       172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence            65445566777778899999 89999999999999876554322   22223444555555555555

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.17  E-value=3.2e-05  Score=77.22  Aligned_cols=136  Identities=12%  Similarity=0.078  Sum_probs=97.3

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhc
Q 004811          562 AQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY----SINEAVELFEEARSILEQEC  634 (729)
Q Consensus       562 ~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~  634 (729)
                      +..|..+...++   +.+|+.+|++|+++        .+.++.++..++.+|....    ........+.+++...... 
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~-  270 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-  270 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-
Confidence            344555555444   57899999999997        2335566666666665321    1122233334444422221 


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                       ...|....++..++..+...|++++|+..+++++.+        +|. ..++..+|.++...|++++|+ +.|++|+.+
T Consensus       271 -~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~-e~~~~AlrL  339 (372)
T 3ly7_A          271 -PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFNL  339 (372)
T ss_dssp             -GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             -ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHhc
Confidence             124667778888998888899999999999999998        344 567889999999999999999 999999999


Q ss_pred             ccc
Q 004811          715 NSR  717 (729)
Q Consensus       715 ~p~  717 (729)
                      +|.
T Consensus       340 ~P~  342 (372)
T 3ly7_A          340 RPG  342 (372)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            997

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.14  E-value=9.8e-05  Score=70.52  Aligned_cols=106  Identities=15%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             ChhHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CC
Q 004811          428 DAEVASVDCSIGDTYLS-----LS------RYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRT-----GK  489 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~  489 (729)
                      .+..+..+++.|.+...     .|      ....|...+++++++        +|.  ...+|..+|.+|...     |+
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            45556666666665532     23      357888889999998        677  567999999999995     99


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhC
Q 004811          490 LRESKSYCENALRIYEKPVPGVPPEE-IASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  550 (729)
                      .++|..+|++++++.         |. ...+++..|..+.. +|++++|..++++++..-+..
T Consensus       220 ~ekA~~~ferAL~Ln---------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          220 MEKAHTAFEHLTRYC---------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHC---------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHHhC---------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999999993         32 25678888998888 599999999999999987764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.14  E-value=3e-05  Score=63.28  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      .-++.+|..++..|+|..|+.+|++|++....... .......++..+|.++.++|+++.|+.++++++.+        .
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~   76 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D   76 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence            45678999999999999999999999998654321 12335688999999999999999999999999999        7


Q ss_pred             hhHHHHHHHHH
Q 004811          639 PDTLGVYSNLA  649 (729)
Q Consensus       639 ~~~~~~~~~la  649 (729)
                      |+...+..+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            88877777776

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.11  E-value=4e-05  Score=62.53  Aligned_cols=82  Identities=17%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (729)
Q Consensus       392 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (729)
                      +..++.+|..++..|+|..|+.+|++|+....... .......++..+|.++..+|+++.|+.++++++.+        .
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence            34578999999999999999999999998765443 23567788999999999999999999999999998        6


Q ss_pred             hhHHHHHHHHH
Q 004811          471 PAVASVFVRLA  481 (729)
Q Consensus       471 ~~~~~~~~~la  481 (729)
                      |....+..+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            77777777665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.10  E-value=0.0001  Score=73.62  Aligned_cols=122  Identities=14%  Similarity=0.083  Sum_probs=91.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh---C-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004811          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK---G-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (729)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~---g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (729)
                      .+.+|+.+|++++++.|...        .++-.++.+|...   + ........+..++.........+..+.++..++.
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a--------~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal  285 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFT--------YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV  285 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHH
Confidence            46899999999999987763        3455555555321   1 1222333344444433444455666778888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                      .+...|++++|+..+++|+.+        ++. ..++..+|.++...|++++|++.|.+|+.+
T Consensus       286 ~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          286 SALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            888899999999999999999        443 567889999999999999999999999999

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.04  E-value=1.9e-05  Score=62.70  Aligned_cols=71  Identities=18%  Similarity=0.110  Sum_probs=64.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          638 HPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      +|+...++..+|.++...++   .++|..++++++++        +|+...++..||.++...|++++|+ .+++++++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~   72 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS   72 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence            46667788999999977666   79999999999998        7999999999999999999999999 999999999


Q ss_pred             ccc
Q 004811          715 NSR  717 (729)
Q Consensus       715 ~p~  717 (729)
                      +|.
T Consensus        73 ~p~   75 (93)
T 3bee_A           73 NDP   75 (93)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            987

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.02  E-value=0.00023  Score=76.28  Aligned_cols=168  Identities=10%  Similarity=0.020  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---------LRESKSYCENALRIY  504 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~  504 (729)
                      .+..+-..+.+.|++++|+.+|+++...       .-.....+|..|-.++...+.         .++|..+|++.... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            3455567888999999999999988764       122334567777666665443         67888888877654 


Q ss_pred             hcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (729)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (729)
                           +. .| ...+|..+...|.+.|++++|..+|++....     |..+. ..+|..+-..|.+.|+.++|..+|++.
T Consensus       100 -----G~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A          100 -----KV-VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             -----TC-CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHH
Confidence                 21 12 2457888999999999999999999987653     33333 357888899999999999999999987


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (729)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (729)
                      .+.    +- .+  ...+|..+-.+|.+.|+.++|.++|++..+.
T Consensus       167 ~~~----G~-~P--d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          167 VES----EV-VP--EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHT----TC-CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhc----CC-CC--CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            652    22 22  2468889999999999999999999997664

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.00  E-value=5.2e-05  Score=65.44  Aligned_cols=130  Identities=11%  Similarity=0.027  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhcc
Q 004811          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (729)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (729)
                      -.+++.....++..+. |+.|+-.+..++.+.+...+..+....+.++..+|..++..++|..|...|+++++..+....
T Consensus        20 ~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             -CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3467889999999997 999999999999887554322222456778999999999999999999999999887653221


Q ss_pred             ccc----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 004811          301 QEH----------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH  360 (729)
Q Consensus       301 ~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  360 (729)
                      ...                .....++.+.++.||..++++.+|+..++..-..         .....+...||.+|
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---------~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---------QRTPKINMLLANLY  165 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---------GCCHHHHHHHHHHC
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---------hcCHHHHHHHHHHh
Confidence            110                1123467899999999999999999987653211         34455666677665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.99  E-value=0.00016  Score=62.49  Aligned_cols=127  Identities=17%  Similarity=0.007  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--
Q 004811          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP--  636 (729)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--  636 (729)
                      ++..-...++..|.|+.|+.....++.+.....+. .+.....++..+|.+++..++|..|...|++|++..+.+...  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45566777889999999999999999886554332 345567789999999999999999999999999987643211  


Q ss_pred             ---------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811          637 ---------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (729)
Q Consensus       637 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (729)
                                     +.+...++.+.+|.||..+|++++|+..++..         |.....+.+...||.+|.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHCC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHhc
Confidence                           12234578899999999999999999998754         223455666777777763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.99  E-value=4.2e-05  Score=65.73  Aligned_cols=86  Identities=12%  Similarity=0.016  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLA  691 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La  691 (729)
                      ...+.+.|.+.+..        .+....+.+++|+++.+..   +.++++.+++..++.       +.| ...+++++||
T Consensus        14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence            34555666666554        4566779999999999988   667999999998875       136 6789999999


Q ss_pred             HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..+.+.|+|++|. .+++.+|+++|+
T Consensus        79 v~~~kl~~Y~~A~-~y~~~lL~ieP~  103 (152)
T 1pc2_A           79 VGNYRLKEYEKAL-KYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHTSCHHHHH-HHHHHHHHHCTT
T ss_pred             HHHHHccCHHHHH-HHHHHHHhcCCC
Confidence            9999999999999 999999999996

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.98  E-value=0.00023  Score=76.20  Aligned_cols=168  Identities=11%  Similarity=-0.049  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHHH
Q 004811          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---------QFSEAQKFCQMALDIHK  381 (729)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~  381 (729)
                      +..+-..+.+.|++++|+.+|+++.+..      -.|+ ..+|..|-.++...+         .+++|..+|.+..... 
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-  100 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNG------VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-  100 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-
Confidence            4556678899999999999999987651      1233 345666655655433         4788888888876532 


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (729)
Q Consensus       382 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (729)
                        ..+ +   ..+|..+...|.+.|++++|+.+|.+...    .+..|+ ..+|..+-..|...|+.++|..+|++..+.
T Consensus       101 --~~P-d---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          101 --VVP-N---EATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             --CCC-C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --CCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence              111 1   35788999999999999999999987643    334444 356788889999999999999999987654


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (729)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (729)
                             .......+|..|...|.+.|+.++|..++++..+..
T Consensus       170 -------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          170 -------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             -------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             -------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence                   123345788999999999999999999999988773

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.84  E-value=0.0001  Score=58.31  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          600 GVALNQMGLACVQRYS---INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      +.++..+|.+++..++   .++|..++++++.+        +|+...+++.+|..+...|+|++|+.+|+++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5678888998876665   79999999999999        9999999999999999999999999999999864

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.72  E-value=0.00042  Score=59.55  Aligned_cols=74  Identities=14%  Similarity=0.106  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCC-h-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          599 FGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYH-P-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                      ...+.+++|+++.+.+   +.++++.+|+..++.        + | ...+++++||..|.++|+|++|+.++++++++  
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--  100 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--  100 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence            3578899999999988   677999999999987        5 6 56889999999999999999999999999998  


Q ss_pred             HHcCCCChhHHHHHH
Q 004811          674 EKLGTANPDVDDEKR  688 (729)
Q Consensus       674 ~~~g~~~p~~~~~~~  688 (729)
                            +|++..+..
T Consensus       101 ------eP~n~QA~~  109 (152)
T 1pc2_A          101 ------EPQNNQAKE  109 (152)
T ss_dssp             ------CTTCHHHHH
T ss_pred             ------CCCCHHHHH
Confidence                  576655543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.017  Score=60.59  Aligned_cols=218  Identities=12%  Similarity=0.044  Sum_probs=139.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (729)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (729)
                      |++..|++.+....+..+...+......++..+..++...|+|+...+++.-....    .+. .............-|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk----r~q-lk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK----HGQ-LKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT----TTT-SHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----hhh-hHHHHHHHHHHHHHHH
Confidence            56778887775554545556666666778888889999999998877765432221    111 1111122222222222


Q ss_pred             -HcCCHHHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 004811          486 -RTGKLRESKSYCENALRIYEKPVPGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (729)
Q Consensus       486 -~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (729)
                       .....+.  ......+........+..  ....+.....|+.+|...|++.+|...+.....-.... .+......++.
T Consensus       105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l  181 (445)
T 4b4t_P          105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL  181 (445)
T ss_dssp             HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred             hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence             2222221  222233333322221211  22356777889999999999999999998876443222 22335567788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      ....+|...+++.+|...+.++........ ..+......+...|.++...++|.+|..+|.++......
T Consensus       182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          182 EQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            889999999999999999999865444332 223445667888899999999999999999999886544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.027  Score=58.99  Aligned_cols=220  Identities=12%  Similarity=-0.007  Sum_probs=141.2

Q ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004811          364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL  443 (729)
Q Consensus       364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  443 (729)
                      ++++.|++.+....+..+...+.  .....++..+..++...|+++...+++....   ...+..............-|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~--~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr~qlk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDL--ASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKHGQLKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCST--TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTTTTSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHH
Confidence            67788887765544444433322  2224567778889999999998877664322   222222222222222222222


Q ss_pred             -HcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004811          444 -SLSRYDEAGFAYQKALTAFKTNKGEN---HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (729)
Q Consensus       444 -~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (729)
                       .....+.  ......+..........   ....+.....|+.+|...|++.+|...+.....-...   ..+.......
T Consensus       105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve~  179 (445)
T 4b4t_P          105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQF  179 (445)
T ss_dssp             HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHHH
T ss_pred             hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHHH
Confidence             1222111  11112222111111000   1235677789999999999999999999987654433   3446677888


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      +.....+|...+++.+|..++.++..........+......+...|.++...++|.+|..+|..+.......++
T Consensus       180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d  253 (445)
T 4b4t_P          180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD  253 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence            99999999999999999999999876665554555556677888999999999999999999999887654443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.15  E-value=0.0033  Score=51.87  Aligned_cols=86  Identities=14%  Similarity=0.037  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD---AIEILEFVVGIREEKLGTANP-DVDDEKRRLA  691 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La  691 (729)
                      ...+...|.+.+..        .+....+.+++|+++....+..+   ++.+++..+       ....| ...+.++.||
T Consensus        17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LA   81 (126)
T 1nzn_A           17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLA   81 (126)
T ss_dssp             HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHH
Confidence            34555666666554        44566789999999999887665   555555444       34446 6789999999


Q ss_pred             HHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..+.+.|+|.+|. .+++.+|+..|+
T Consensus        82 vg~yklg~Y~~A~-~~~~~lL~~eP~  106 (126)
T 1nzn_A           82 VGNYRLKEYEKAL-KYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             HHHHHhhhHHHHH-HHHHHHHHhCCC
Confidence            9999999999999 999999999996

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.90  E-value=0.011  Score=49.82  Aligned_cols=104  Identities=13%  Similarity=-0.017  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          559 GIEAQMGVMYYMLGNY------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      ..|........+.|+.      ++-++.|++|+...+.........+...|...|.. ...++.++|.+.|+.++.+   
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---   89 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---   89 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence            4556666666666887      77888999988876443333445567778887865 5669999999999999997   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                           +...+.+|...|..-.++|+...|...+.+++.+
T Consensus        90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence                 5566889999999999999999999999999986

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.82  E-value=0.012  Score=49.50  Aligned_cols=107  Identities=15%  Similarity=0.093  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811          601 VALNQMGLACVQRYSI------NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       601 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (729)
                      ..|..........|+.      ++-++.|++|+..............+..|...|.. ...++.++|.+.|+.++.+   
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---   89 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---   89 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence            4555555566666777      77788888888764322222344556677777755 5679999999999999986   


Q ss_pred             HcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          675 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       675 ~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                           |...+.+|...|..-.++|+...|. +.+.+++.+.|.
T Consensus        90 -----hKkFAKiwi~~AqFEiRqgnl~kAR-kILg~AiG~~~k  126 (161)
T 4h7y_A           90 -----CKKFAFVHISFAQFELSQGNVKKSK-QLLQKAVERGAV  126 (161)
T ss_dssp             -----CTTBHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCB
T ss_pred             -----hHHHHHHHHHHHHHHHHcccHHHHH-HHHHHHhccCCC
Confidence                 4455889999999999999999999 999999999885

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.48  E-value=0.036  Score=45.67  Aligned_cols=74  Identities=12%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          600 GVALNQMGLACVQRYSINE---AVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      ..+.+++|+++....+...   ++.+++..+..       +.| ....+++.||..+.++|+|++|+.+++.++++    
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~----  103 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----  103 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----
Confidence            4688889999998877655   66666665543       236 56779999999999999999999999999988    


Q ss_pred             cCCCChhHHHHHH
Q 004811          676 LGTANPDVDDEKR  688 (729)
Q Consensus       676 ~g~~~p~~~~~~~  688 (729)
                          .|++..+..
T Consensus       104 ----eP~n~QA~~  112 (126)
T 1nzn_A          104 ----EPQNNQAKE  112 (126)
T ss_dssp             ----CTTCHHHHH
T ss_pred             ----CCCCHHHHH
Confidence                566655543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.95  E-value=2.7  Score=46.51  Aligned_cols=83  Identities=13%  Similarity=0.043  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHH
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------RLDDAIEILEFVV  669 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al  669 (729)
                      .+.=|..||.+..+.+++++|++.|+.++..         .....++..|-.+|...+         +.+..+...-+.+
T Consensus       612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~---------RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~  682 (754)
T 4gns_B          612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA---------RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI  682 (754)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS---------SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence            3556899999999999999999999999964         344567888889998877         6777777777776


Q ss_pred             HHHHHHcCCCChhHHHHHHHH
Q 004811          670 GIREEKLGTANPDVDDEKRRL  690 (729)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~L  690 (729)
                      ...-+-+..-.|....++..|
T Consensus       683 ~w~~RwY~efs~~l~~~l~kL  703 (754)
T 4gns_B          683 SYDCRYYNYCQIFNLQLLEKL  703 (754)
T ss_dssp             HHHHHTTBCCCHHHHHHHHHH
T ss_pred             HHhhhcccccCHHHHHHHHHH
Confidence            665666666666665555443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.037  Score=57.74  Aligned_cols=112  Identities=21%  Similarity=0.137  Sum_probs=88.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (729)
                      ......++..+|..|...|+++.|.+.|.++...+..     .......+..+..++...+++..+..++.++..+... 
T Consensus       127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-  200 (429)
T 4b4t_R          127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-  200 (429)
T ss_dssp             CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-
Confidence            3444567788999999999999999999998776422     3456778888999999999999999999999888766 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                        +.++..........|.++...++|.+|-.+|-.+...+
T Consensus       201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence              33444455566667888888999999999998876543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.061  Score=56.05  Aligned_cols=110  Identities=14%  Similarity=0.017  Sum_probs=91.8

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      .....++..+|..|...|+++.|.+.|.++........     ....++..+..++...+++..+..++.++.......+
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~  202 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG  202 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence            34556888999999999999999999999888765443     2356788888999999999999999999988877777


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (729)
                      +...........|.++...++|..|..+|..++..
T Consensus       203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            76666677777888899999999999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.57  E-value=0.25  Score=56.44  Aligned_cols=46  Identities=24%  Similarity=0.157  Sum_probs=30.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004811          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (729)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (729)
                      ....|++++|.+..+.             ......|..+|..+...++++.|+.+|.++
T Consensus       662 ~l~~~~~~~A~~~~~~-------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-------------ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHh-------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456666666655321             223456777888888888888888887765

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.55  E-value=0.082  Score=43.66  Aligned_cols=68  Identities=15%  Similarity=0.018  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhcc
Q 004811          641 TLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (729)
                      ...+.+++|+++.+..+.   .+++.+++..+..        +| ...+.++.||..+.+.|+|++|. .+.+.+|+..|
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP  109 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHER  109 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCC
Confidence            346889999999988765   4577777666543        35 57899999999999999999999 99999999999


Q ss_pred             c
Q 004811          717 R  717 (729)
Q Consensus       717 ~  717 (729)
                      +
T Consensus       110 ~  110 (134)
T 3o48_A          110 N  110 (134)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.52  E-value=0.17  Score=51.93  Aligned_cols=120  Identities=16%  Similarity=0.120  Sum_probs=86.8

Q ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCCCCChHHHHH
Q 004811          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGERKSAFFGVA  602 (729)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~  602 (729)
                      |......|+.+.|...+.+|+.++...+-..            +.  ...|-.+ ...+++.              ...+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~------------~~--~~~w~~~~r~~l~~~--------------~~~a  173 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LR--DFQFVEPFATALVED--------------KVLA  173 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GT--TSTTHHHHHHHHHHH--------------HHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC------------CC--chhHHHHHHHHHHHH--------------HHHH
Confidence            3344456888999999999998875331100            00  0111111 1111111              2245


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      +..++..+...|++.+|+..+..++..        +|....++..|..+|...|+..+|+..|+++.....+-+|..
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~  242 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  242 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            566788899999999999999999998        899989999999999999999999999999999888877743

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.30  E-value=0.23  Score=41.55  Aligned_cols=69  Identities=14%  Similarity=0.029  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          640 DTLGVYSNLAGTYDAIGRLD---DAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                      -...+.+++|+++....+..   +++.+++..+..        +| ...+.++.||..+.+.|+|.+|. .+.+.+|+..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~e  107 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHE  107 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcC
Confidence            45568899999999887654   566666666542        34 67889999999999999999999 9999999999


Q ss_pred             cc
Q 004811          716 SR  717 (729)
Q Consensus       716 p~  717 (729)
                      |+
T Consensus       108 P~  109 (144)
T 1y8m_A          108 RN  109 (144)
T ss_dssp             CC
T ss_pred             CC
Confidence            96

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.21  E-value=0.31  Score=40.25  Aligned_cols=75  Identities=5%  Similarity=-0.071  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004811          599 FGVALNQMGLACVQRYS---INEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (729)
                      ...+.+++|+++.+..+   ..+++.+++..+..        +| ...+.++.||..+.++|+|++|+.+.+.++++   
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---  107 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---  107 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence            35678888988888765   45788888877765        56 46779999999999999999999999999976   


Q ss_pred             HcCCCChhHHHHHHH
Q 004811          675 KLGTANPDVDDEKRR  689 (729)
Q Consensus       675 ~~g~~~p~~~~~~~~  689 (729)
                           .|++..+...
T Consensus       108 -----eP~N~QA~~L  117 (134)
T 3o48_A          108 -----ERNNKQVGAL  117 (134)
T ss_dssp             -----CTTCHHHHHH
T ss_pred             -----CCCCHHHHHH
Confidence                 5766655543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=95.19  E-value=2.5  Score=41.12  Aligned_cols=132  Identities=9%  Similarity=-0.081  Sum_probs=69.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004811          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (729)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (729)
                      .|+|=+|.+.|+-................+++.-+..+.+.|++..|.+...-.++.+.+...   +........+..++
T Consensus        26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~rl~~l~  102 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVARLVRLI  102 (312)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHH
Confidence            345555555444333333333333333344455556666777777777776666666666542   22233444555555


Q ss_pred             HHcCCHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 004811          485 NRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (729)
Q Consensus       485 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (729)
                      .....-+ .=..+..+++....+..  .........+..+|..|...|++.+|..+|-
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g--~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFS--EYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTS--SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            4432211 22456666666655431  1122234567777888887777777766653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.36  Score=53.33  Aligned_cols=123  Identities=13%  Similarity=0.069  Sum_probs=84.1

Q ss_pred             cch-HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHHHHHh----CCCCC-----
Q 004811          530 MNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY--M-LGNYSDSYDSFKNAISKLRAI----GERKS-----  596 (729)
Q Consensus       530 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~~~~~----~~~~~-----  596 (729)
                      .++ ++.|+.++++.....+..        .+++..+.+..  . ..+--+|+..+.++++-....    .....     
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            445 577888888876654433        22222222222  1 123456777777777533211    11110     


Q ss_pred             -hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004811          597 -AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (729)
Q Consensus       597 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (729)
                       +.....+..-+..+...|+++-|+.+.++|+..        .|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence             112335666688888999999999999999999        8999999999999999999999999888766

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.99  E-value=0.24  Score=56.63  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=37.3

Q ss_pred             HHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004811          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL  335 (729)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  335 (729)
                      ......|++++|.+..+..-          ++    ..|..+|..+...++++.|+.+|.++-
T Consensus       660 ~~~l~~~~~~~A~~~~~~~~----------~~----~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDES----------AE----MKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTCC----------CH----HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ehhhhcCCHHHHHHHHHhhC----------cH----hHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34567788888888754321          11    248999999999999999999999863

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.17  Score=52.67  Aligned_cols=144  Identities=13%  Similarity=0.024  Sum_probs=64.9

Q ss_pred             HHHHhcCHHHHHHHHHHHH--HHHHh-cCCCCCHHHHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHHHHHhC
Q 004811          359 AHVQALQFSEAQKFCQMAL--DIHKD-NGSPASLEEAADRRLMGLICETKGDHEAAL----------EHLVLASMTMIAN  425 (729)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al--~~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~----------~~~~~al~~~~~~  425 (729)
                      .++..+++++|..+....+  +.... +...-+...+.+|+..+.++...|+.....          ..+-.+++.....
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456778888888876655  12111 111122335677888888888888766532          2333333333334


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      .+....+.+++.+-+.|...+.|++|..+..++.-  ... ...+...+..++.+|.++...++|.+|..++..|+..+.
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            45667788899999999999999999999887731  100 011345577788899999999999999999999987643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.26  Score=51.35  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=66.3

Q ss_pred             HHHHhCCHHHHHHHHHHHH--HHHH---hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-cC
Q 004811          401 ICETKGDHEAALEHLVLAS--MTMI---ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY-------QKALTAFKTN-KG  467 (729)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~  467 (729)
                      .+...+++++|..+....+  ....   ....+...+.+|+..+.++...|+........       ...+..++.. ..
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            4456678888887766544  1221   12224556777888888888888776543221       1222222222 22


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                      .|....+.+++.+-+.|...+.+++|..+..++.  +...  .......+..++.+|.++..+++|.+|.+++..|+..+
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            3455667888899999999999999999998874  2111  12355667888999999999999999999999999876


Q ss_pred             HhC
Q 004811          548 NDA  550 (729)
Q Consensus       548 ~~~  550 (729)
                      +..
T Consensus       301 p~~  303 (523)
T 4b4t_S          301 PHN  303 (523)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            644

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.55  E-value=0.44  Score=39.93  Aligned_cols=65  Identities=6%  Similarity=-0.031  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          599 FGVALNQMGLACVQRYSI---NEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      ...+.+++|+++....+.   .+++.+++..+..        +| ...+.++.||..+.++|+|++|..+.+.++++
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            356788889999887754   5677888877764        45 56679999999999999999999999999987

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.40  E-value=1.4  Score=50.01  Aligned_cols=136  Identities=10%  Similarity=-0.051  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (729)
                      .....|+.+-..|++.|+.++|..+|.+..+....-...    ...+|+.|...|.+.|+.++|.++|++....     |
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P----dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G  195 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL----TLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC----CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Confidence            344568889999999999999999998876543322111    2468999999999999999999999998664     2


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhh
Q 004811          636 PYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                      - .|+.. +|..|..++.+.|+. ++|.++|++....      .-.|+.. .+..+       =.-++-. ..++.+-..
T Consensus       196 ~-~PDvv-TYntLI~glcK~G~~~e~A~~Ll~EM~~k------G~~PD~v-tY~~l-------l~~~eR~-~vL~~Vrkv  258 (1134)
T 3spa_A          196 L-TPDLL-SYAAALQCMGRQDQDAGTIERCLEQMSQE------GLKLQAL-FTAVL-------LSEEDRA-TVLKAVHKV  258 (1134)
T ss_dssp             C-CCCHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH------TCCSHHH-HHHSC-------CCHHHHH-HHHHHHGGG
T ss_pred             C-CCcHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc------CCCCChh-hcccc-------cChhhHH-HHHHHHHHh
Confidence            1 45544 788888899999985 7888999988764      3345542 22111       1233333 456666666


Q ss_pred             ccc
Q 004811          715 NSR  717 (729)
Q Consensus       715 ~p~  717 (729)
                      +|+
T Consensus       259 ~P~  261 (1134)
T 3spa_A          259 KPT  261 (1134)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            776

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.21  E-value=4.6  Score=39.59  Aligned_cols=234  Identities=17%  Similarity=0.094  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004811          409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG  488 (729)
Q Consensus       409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  488 (729)
                      =+|.+.|+-....+...+.......+++.-+..+.+.|++.-|.+...-.++.+.+..-+   ........+..++....
T Consensus        32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~---~~~~~~~rL~~L~~~~~  108 (336)
T 3lpz_A           32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR---VDGASRGKLLGCLRLFQ  108 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHTTSC
T ss_pred             cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhCC
Confidence            344444333332222333333333444555666777777777777777777776665422   22244555566655544


Q ss_pred             CHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHH-----------H-HHHHHhCCCCCC
Q 004811          489 KLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK-----------A-LKIYNDAPGQQS  555 (729)
Q Consensus       489 ~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----------a-l~~~~~~~~~~~  555 (729)
                      .-+ .=..+..+++....+.  +.........+..+|..|...+++.+|..+|-.           . .+..... + +.
T Consensus       109 ~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~-~-~~  184 (336)
T 3lpz_A          109 PGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD-E-SH  184 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS-C-GG
T ss_pred             CCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-C-Cc
Confidence            321 2245666777665542  212223345678899999999999999887621           1 1111111 1 22


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----------------CChHHHHHHHHHHHHHHHcCCHHH
Q 004811          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-----------------KSAFFGVALNQMGLACVQRYSINE  618 (729)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~  618 (729)
                      ............|+..++...|...+....+........                 ..+..-  +..+..+-++.+..  
T Consensus       185 e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLN--Fl~lLllt~q~~~~--  260 (336)
T 3lpz_A          185 TAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLN--FISMLLLSVQKGSP--  260 (336)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHH--HHHHHHHHHHSCCH--
T ss_pred             cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHH--HHHHHHHHHhcCCH--
Confidence            333333344556788999999999888777665332111                 112111  22223344445543  


Q ss_pred             HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcC
Q 004811          619 AVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIG  656 (729)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g  656 (729)
                        ..|....+.+...... +| .....+..+|..|+...
T Consensus       261 --~lF~~L~~~Y~~~l~r-d~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          261 --DLFRQLKSKYEANLNE-LNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             --HHHHHHHHHTHHHHHT-TTTTTHHHHHHHHHHHHCCC
T ss_pred             --HHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHcCCC
Confidence              4455554444443333 34 66778888899888664

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.03  E-value=4.8  Score=39.16  Aligned_cols=174  Identities=8%  Similarity=-0.010  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      +....+..++.=|.+++++++|++++...                     +..+.+.|++..|.++..-.++.+.+....
T Consensus        31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~   89 (312)
T 2wpv_A           31 EAHQTLRTIANRYVRSKSYEHAIELISQG---------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVK   89 (312)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence            33445556666677777777777665544                     334445556665655555555555544332


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH------
Q 004811          595 KSAFFGVALNQMGLACVQRYSIN-EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF------  667 (729)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------  667 (729)
                      ..   ......+..++.....-+ .=..+..+++....+..+. .......+..+|..|...|++.+|..+|-.      
T Consensus        90 ~~---~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~  165 (312)
T 2wpv_A           90 VD---DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY-KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSM  165 (312)
T ss_dssp             CS---HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHH
T ss_pred             CC---HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccH
Confidence            21   123334444443322111 1256677777776665332 223445789999999999999999998742      


Q ss_pred             --HHHHHHHHcCC---CChhHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHhh
Q 004811          668 --VVGIREEKLGT---ANPDVDDEKRRLA-ELLKEAGRVRSRKAQSLETLLDA  714 (729)
Q Consensus       668 --al~~~~~~~g~---~~p~~~~~~~~La-~~~~~~g~~~~A~~~~l~~al~~  714 (729)
                        ...+.-+....   ..|...+.+...+ ..|...|+...|. ..+....+.
T Consensus       166 ~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~-~~~~~f~~~  217 (312)
T 2wpv_A          166 IKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAH-ESKDIFLER  217 (312)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHH
Confidence              12221111112   4555566554444 3467889999998 887766543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.90  E-value=1.1  Score=45.62  Aligned_cols=103  Identities=12%  Similarity=-0.029  Sum_probs=80.2

Q ss_pred             HHHHHHcCChHHHHHHHHHhcccchhhccccc---h----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH---A----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ  338 (729)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  338 (729)
                      |......|+.+.|...+.+|+.+....+-+..   +          .....+...++..+...|++.+|+..+..++.. 
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-  200 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-  200 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            44445568999999999999998642211111   0          122344567788889999999999999999888 


Q ss_pred             HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004811          339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (729)
Q Consensus       339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (729)
                             +|..-.++..+..++...|+..+|+..|+++......
T Consensus       201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~  237 (388)
T 2ff4_A          201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD  237 (388)
T ss_dssp             -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                   7888889999999999999999999999999886544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.84  E-value=2.1  Score=37.51  Aligned_cols=101  Identities=12%  Similarity=-0.007  Sum_probs=66.3

Q ss_pred             HHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 004811          275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR  354 (729)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  354 (729)
                      ....|+++.|.++.+..-.              -..|..||......|+++-|..+|+++-..                .
T Consensus        15 AL~lg~l~~A~e~a~~l~~--------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~   64 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKLND--------------SITWERLIQEALAQGNASLAEMIYQTQHSF----------------D   64 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------H
T ss_pred             HHhcCCHHHHHHHHHHhCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------H
Confidence            4667999999988765411              124889999999999999999999875433                1


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004811          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA  418 (729)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a  418 (729)
                      .+..+|...|+.+.-....+    +....++         ++....+++.+|+++++++.|.+.
T Consensus        65 ~L~~Ly~~tg~~e~L~kla~----iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           65 KLSFLYLVTGDVNKLSKMQN----IAQTRED---------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHTCHHHHHHHHH----HHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHH----HHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            23334556677654443333    3322221         455566777889998888887643

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.24  E-value=0.93  Score=51.38  Aligned_cols=107  Identities=11%  Similarity=0.076  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004811          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (729)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (729)
                      ....|+.+-..|.+.|+.++|..+|.+.......-.   .|+. .+|..|...|.+.|++++|.++|++..+.      .
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pdv-vTYNtLI~Glck~G~~~eA~~Lf~eM~~~------G  195 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLTL-DMYNAVMLGWARQGAFKELVYVLFMVKDA------G  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCCH-hHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Confidence            456789999999999999999999988765432221   3444 48999999999999999999999988653      2


Q ss_pred             CChhHHHHHHHHHHHHHHhCCH-hHHHHHHHHHHHhh--ccc
Q 004811          679 ANPDVDDEKRRLAELLKEAGRV-RSRKAQSLETLLDA--NSR  717 (729)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~~l~~al~~--~p~  717 (729)
                      -.|+ ..+|..|...+.+.|+. ++|. ..|++..+.  .|+
T Consensus       196 ~~PD-vvTYntLI~glcK~G~~~e~A~-~Ll~EM~~kG~~PD  235 (1134)
T 3spa_A          196 LTPD-LLSYAAALQCMGRQDQDAGTIE-RCLEQMSQEGLKLQ  235 (1134)
T ss_dssp             CCCC-HHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHTCCSH
T ss_pred             CCCc-HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHcCCCCC
Confidence            3454 56788888899999985 6787 888887654  455

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.07  E-value=7.2  Score=38.21  Aligned_cols=158  Identities=10%  Similarity=0.032  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHHHHHHh-CCCCChHHHHHHHHHH
Q 004811          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN--------AISKLRAI-GERKSAFFGVALNQMG  607 (729)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~~-~~~~~~~~~~~~~~la  607 (729)
                      ..+..+++.......+.......+...+|..|.+.+++.+|..+|--        ..+++-+. ....+...........
T Consensus       115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaV  194 (336)
T 3lpz_A          115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAV  194 (336)
T ss_dssp             HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            34556666665553222333456778899999999999999888721        11221111 1111222233344444


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCC--------C------ChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          608 LACVQRYSINEAVELFEEARSILEQECGP--------Y------HPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~------~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                      ..|+..++...|...+....+.+......        .      .|.... -+..+..+-.+.+.    ...|....+.+
T Consensus       195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~----~~lF~~L~~~Y  270 (336)
T 3lpz_A          195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGS----PDLFRQLKSKY  270 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCC----HHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCC----HHHHHHHHHHH
Confidence            56778899999999888877765432110        0      111111 11222223344454    35666666666


Q ss_pred             HHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          673 EEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       673 ~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                      ...+..+.|.....+..+|.+|+...
T Consensus       271 ~~~l~rd~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          271 EANLNELNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             HHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred             HHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence            65555543377888899999998653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.33  E-value=18  Score=40.94  Aligned_cols=188  Identities=12%  Similarity=0.141  Sum_probs=98.0

Q ss_pred             HHHHHhcCCC---CCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHcCC
Q 004811          500 ALRIYEKPVP---GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGN  573 (729)
Q Consensus       500 al~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~  573 (729)
                      ++....+.++   ........-+++.+|.++...++  +++.++...+.......+.   ......+...||.++.-.++
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~  470 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN  470 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence            3444444443   23444567778888888877664  6777777766543211111   11222344577777776665


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004811          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (729)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (729)
                      - ++...+...+.      +........+-..+|.++...|+-+....++..+.+.        ..+...-...+|..+.
T Consensus       471 e-ev~e~L~~~L~------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll  535 (963)
T 4ady_A          471 I-EVYEALKEVLY------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALI  535 (963)
T ss_dssp             H-HHHHHHHHHHH------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHh------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhh
Confidence            3 45555544443      1111111245567888888888876666555554431        2222222334444455


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChhHHH-HHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004811          654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLL  712 (729)
Q Consensus       654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al  712 (729)
                      ..|+.+.+..+.+....       ..+|.... +...+|..|...|+...-. ..+..+.
T Consensus       536 ~~g~~e~~~~li~~L~~-------~~dp~vRygaa~alglAyaGTGn~~aIq-~LL~~~~  587 (963)
T 4ady_A          536 NYGRQELADDLITKMLA-------SDESLLRYGGAFTIALAYAGTGNNSAVK-RLLHVAV  587 (963)
T ss_dssp             TTTCGGGGHHHHHHHHH-------CSCHHHHHHHHHHHHHHTTTSCCHHHHH-HHHHHHH
T ss_pred             hCCChHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHhc
Confidence            66777766666554433       22343322 2345566666777743322 3444443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.03  E-value=2.1  Score=37.57  Aligned_cols=101  Identities=10%  Similarity=-0.050  Sum_probs=66.1

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004811          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (729)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (729)
                      ....|+++.|.+..+..       ..      ...|..+|......|+++-|..+|.++-              -+..+.
T Consensus        15 AL~lg~l~~A~e~a~~l-------~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------------D~~~L~   67 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-------ND------SITWERLIQEALAQGNASLAEMIYQTQH--------------SFDKLS   67 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHTT--------------CHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh-------CC------HHHHHHHHHHHHHcCChHHHHHHHHHhC--------------CHHHHH
Confidence            35679999998887653       11      2469999999999999999999998762              123344


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (729)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (729)
                      .+|...|+.+.-....+.+...    +   .      +.....+++.+|+++++++.|.+.
T Consensus        68 ~Ly~~tg~~e~L~kla~iA~~~----g---~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           68 FLYLVTGDVNKLSKMQNIAQTR----E---D------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHT----T---C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHC----c---c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            5666777775544333322221    1   1      122345567789998888887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.18  E-value=3.9  Score=48.40  Aligned_cols=181  Identities=9%  Similarity=0.020  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHH----------------HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIY----------------NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                      .+.+|.++...|++++|..+|+++-.-.                .........+...|..+..++...+.++.++.+.+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4779999999999999999998763211                111111223345677888899999999999999999


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004811          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (729)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (729)
                      |++..   ....+......|.++-..+...|+|++|...+...-.         ......++..|....+..|..+.=+.
T Consensus       925 Ai~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~~  992 (1139)
T 4fhn_B          925 ADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLLN  992 (1139)
T ss_dssp             HHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhhC
Confidence            98752   2222222334678888889999999999877644321         11222344455444444444333221


Q ss_pred             H--------HHHHHHHH-HHH-cCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhc
Q 004811          664 I--------LEFVVGIR-EEK-LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       664 ~--------~~~al~~~-~~~-~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (729)
                      +        .+..+.-. +.. .-...|.+-..   |=-.+...|++..|....|+.+.++.
T Consensus       993 lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~i---LYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B          993 YSMPTLRQDVDNLLERKAFQMINVESQPCWYNI---LFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp             HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHH---HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHhCCccccCCCHHHH---hHhhhhccCChHHHHHHHHHHHHHhh
Confidence            1        11111111 111 01223433222   33345667888888867888876653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.86  E-value=7.2  Score=33.49  Aligned_cols=176  Identities=14%  Similarity=0.009  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK----------LR  589 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~  589 (729)
                      -..++.++.-.|.+..|+-++..       .    .+ +...+.-+.+|.+..+|..|+..++..++-          --
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~~-------l----NT-~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLHK-------L----NT-CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-------C----CB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHHh-------c----ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence            34566777788888877665532       1    11 344566788999999999999999988831          00


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-----------HHHcCCh
Q 004811          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-----------YDAIGRL  658 (729)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-----------~~~~g~~  658 (729)
                      +..-.++......+..+|.++.+.|+.++|+.+|.....+        .+-...+ .+|..-           -...|+-
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~--------~~lf~~v-EnliyeN~vp~~~d~~~i~~~~~~  174 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK--------SFLFSPV-ENLLLENKVPQKRDKENVRQTGRR  174 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHH-HHHHHTTCCCCCC-----------
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC--------ccccchH-HHHHhhcCCCcccchHHHHhhhhc
Confidence            1111112223457788999999999999999999998776        3332211 111000           0111111


Q ss_pred             HHHHHHHHHHHHHHHHH-------cCCCChhHHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          659 DDAIEILEFVVGIREEK-------LGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       659 ~~A~~~~~~al~~~~~~-------~g~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      .--.+++.....+.+.+       +...-|.... .....|..|...|-.++.. ..|..+...+|.
T Consensus       175 ~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~  240 (242)
T 3kae_A          175 GIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPM  240 (242)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred             cchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCC
Confidence            11122233222222210       1122333322 2235678899999999999 999999999985

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.97  E-value=1.1  Score=47.04  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (729)
                      ..++..||.+......+..|..+|.+|..+        .|.....+..||.+....|+.-+|+-+|-+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            357888999999999999999999999999        999999999999999999999999999998864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.32  E-value=8.4  Score=45.56  Aligned_cols=136  Identities=9%  Similarity=-0.071  Sum_probs=87.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------------Hhc-CCCCCHhHHHHHHHHHHHHHHcCChHH
Q 004811          218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFE-------------IGA-NGKPSLELVMCLHVIAAIYCSLGQYNE  283 (729)
Q Consensus       218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~-------------~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~  283 (729)
                      |..+..-+.+|++++..|+ +++|..+|++|..-+.             ... ...........|..+..++...+.++.
T Consensus       839 ~~~~~~~yl~g~~~L~~ge-~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~  917 (1139)
T 4fhn_B          839 NSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID  917 (1139)
T ss_dssp             CCCHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred             cCCcHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence            3444456889999999998 9999999988632110             000 000011123457778888999999999


Q ss_pred             HHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh
Q 004811          284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA  363 (729)
Q Consensus       284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  363 (729)
                      ++++...|++..    .++.+......|..+=..+...|+|++|...+...-.         ......++..|-...+..
T Consensus       918 vi~fa~lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~  984 (1139)
T 4fhn_B          918 ALEFSLLADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQ  984 (1139)
T ss_dssp             HHHHHHHHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhC
Confidence            999999998764    2233333344577888889999999999776643211         123345556665555655


Q ss_pred             cCHH
Q 004811          364 LQFS  367 (729)
Q Consensus       364 g~~~  367 (729)
                      ++.+
T Consensus       985 ~~~~  988 (1139)
T 4fhn_B          985 GKIN  988 (1139)
T ss_dssp             CCHH
T ss_pred             CChh
Confidence            5544

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.12  E-value=24  Score=35.72  Aligned_cols=131  Identities=11%  Similarity=0.053  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----C-------CCChhHHHHHHHH
Q 004811          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA----N-------DQDAEVASVDCSI  438 (729)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~-------~~~~~~~~~~~~l  438 (729)
                      +++|+..+........+  ..   ....+..+.....+.++|++++.........    .       ........+...+
T Consensus        59 ~~ly~~fi~~f~~kin~--L~---lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i  133 (393)
T 4b4t_O           59 LRLYDNFVSKFYDKINQ--LS---VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI  133 (393)
T ss_dssp             HHHHHHHHHHHHHHSCS--HH---HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCH--HH---HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence            44555555555544433  11   1112334556677899999998765322111    0       1123345667788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      +..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+...+-..+..+.
T Consensus       134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            9999999999999999999988887776555556677777788888999999988887777777654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=87.54  E-value=39  Score=38.26  Aligned_cols=173  Identities=9%  Similarity=0.010  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP--ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      ...+++.+|.++...+  .+++.++...+.........  .......+...||.++.-.++. ++.+.+...+.   .  
T Consensus       412 k~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~---d--  483 (963)
T 4ady_A          412 KGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLY---N--  483 (963)
T ss_dssp             HHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHH---T--
T ss_pred             HHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHh---c--
Confidence            4556777777765544  46777777766543210000  0122223455778877766653 45555544432   1  


Q ss_pred             CChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004811          427 QDAE-VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (729)
Q Consensus       427 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (729)
                      +... ...+-..+|.++.-.|+-+.....+..+.+.        ......-...+|..+...|+.+.+....+.....  
T Consensus       484 d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--  553 (963)
T 4ady_A          484 DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALINYGRQELADDLITKMLAS--  553 (963)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--
Confidence            1211 1245567888888888876655555544431        2222333344555555677777666555544332  


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                           .++.....+...+|..|...|+...-..++..+.
T Consensus       554 -----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          554 -----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             -----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence                 1233334455678888889999654444555544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.48  E-value=1.5  Score=46.12  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                      .++..||.+......+..|..+|.+|+.+        .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            46778999999999999999999999999        8999999999999999999999999999998865

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.03  E-value=28  Score=35.28  Aligned_cols=110  Identities=8%  Similarity=-0.049  Sum_probs=75.9

Q ss_pred             HHHHHHcCChHHHHHHHHHhcccchhhcc--------ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEG--------QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (729)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (729)
                      ..+.....+.++|++++++..........        ..+....+.+...++..|...|+.++|..+++++-.......+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            44556678899999999877554321111        1111234556788999999999999999999999887766433


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (729)
                      .+..-....+...+..|...++|..+...+-..+....
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            33234555666677788888999888777777666554

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=85.63  E-value=12  Score=36.24  Aligned_cols=74  Identities=19%  Similarity=0.130  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          432 ASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       432 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      ..++.+||.+-...-  ....++..|.+++...+..++..|   ..-|..+|..+++.+++.+|+..+-++-...+...
T Consensus       255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YN  330 (472)
T 3re2_A          255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYN  330 (472)
T ss_dssp             HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred             chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence            344555555443321  222388999999999988885433   45677889999999999999999999988877643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.81  E-value=7.6  Score=36.53  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=75.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---------------
Q 004811          609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE---------------  673 (729)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------  673 (729)
                      ..++.|+.++|+......++.        +|........|.++++-.|+++.|...++.+.++..               
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence            356778999999999999988        899999999999999999999999998887655411               


Q ss_pred             -----HHc-C------CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          674 -----EKL-G------TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       674 -----~~~-g------~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                           +++ |      ...|........-+......|+.++|. ..-..+++.-|.
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~ap~  132 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcCcc
Confidence                 111 1      112222333344455666789999999 999999888765

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=84.51  E-value=9.9  Score=33.97  Aligned_cols=87  Identities=6%  Similarity=-0.032  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH
Q 004811          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY  574 (729)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  574 (729)
                      .++++++..+...-.-.+++....+|...+..+ ..+...++...|.-....     +.....+..|...|..+...|++
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~  131 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF  131 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence            578888887766433456777788888888765 233355777777655543     33344577888999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 004811          575 SDSYDSFKNAISK  587 (729)
Q Consensus       575 ~~A~~~~~~al~~  587 (729)
                      .+|..+|+.+++.
T Consensus       132 ~~A~~Vy~~GI~~  144 (202)
T 3esl_A          132 LEAKVLLELGAEN  144 (202)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999874

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=84.41  E-value=24  Score=32.14  Aligned_cols=177  Identities=10%  Similarity=0.024  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH----HHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCC
Q 004811          479 RLADMYNRTGKLRESKSYCENALR----IYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      .+|.+..+.++|++...+.+++..    .-...     .   ..-.+.|..+|-. .|....+...+....+   ...+.
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eL-----t---~EERnLLSvAYKNvig~rR~swRiissiEq---kek~~   79 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEF-----D---DEERHLLTLCIKHKISDYRTMTSQVLQEQT---KQLNN   79 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCSC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCC-----C---HHHHHHHHHHHHHhhcccHHHHHHHHHHHH---HHcCC
Confidence            678889999999999999999988    42111     1   1223334444422 2333333333322211   11121


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-----QRYSINEAVELFEEARS  628 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  628 (729)
                      ..     ...+..-|... =-.+-.......+.+.....-+........+-..|..|.     ..|+.+.|...|+.|.+
T Consensus        80 ~~-----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~  153 (227)
T 2o8p_A           80 DE-----LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT  153 (227)
T ss_dssp             HH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHH
Confidence            11     11112222111 112223344555665554332221112233334455444     35678999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 004811          629 ILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  672 (729)
                      +......|.||-......+.+.+|. -+++.++|..+.++|+.+.
T Consensus       154 iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          154 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            9988788889988887777777655 5889999999999998764

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=83.97  E-value=28  Score=32.56  Aligned_cols=183  Identities=14%  Similarity=0.099  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhCC
Q 004811          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      ..-+..+|.+..+.++|++...+.+++.+..  +...    .   .-.+.|..+|-. .|....+...+....+.....+
T Consensus         8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt----~---EERnLLSvaYKNvig~rR~swRiissieqke~~k~   80 (260)
T 1o9d_A            8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRG   80 (260)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCC----H---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccC
Confidence            3456678888889999999999999988754  2211    1   223444444322 1222233333322111111011


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHcCC----------HHHH
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHPA-VASVFVRLADMYNRTGK----------LRES  493 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~-~~~~~~~la~~~~~~g~----------~~~A  493 (729)
                      ...     ...+..-|.. .=-.+-...+...+.+.....-+  ..+. ....+-..|..|...-.          .+.|
T Consensus        81 ~~~-----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a  154 (260)
T 1o9d_A           81 NEE-----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST  154 (260)
T ss_dssp             CHH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             cHH-----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence            111     1111111111 11122334455555554443211  1121 22223344555543322          3578


Q ss_pred             HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Q 004811          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNELEQAIKLLQKALKI  546 (729)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~  546 (729)
                      ...|+.|..+....++.. +|.......+.+..| .-+++.++|..+.++|+.-
T Consensus       155 ~~aY~~A~~iA~~~L~pt-hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          155 LTAYKAAQDIATTELAPT-HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            889999999987545444 444444444555544 4579999998887776654

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=83.19  E-value=16  Score=36.11  Aligned_cols=63  Identities=21%  Similarity=0.190  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 004811          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (729)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (729)
                      ++.+|.+++...+..+...|   ..-|..+|..+++.+++.+|+..+-.+-...+......++.++
T Consensus       298 ~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEI  360 (550)
T 3u84_A          298 PLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEI  360 (550)
T ss_dssp             HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHH
Confidence            78899999999888875433   4567888999999999999999999999887765433333333

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=83.16  E-value=21  Score=30.64  Aligned_cols=98  Identities=16%  Similarity=0.072  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHH
Q 004811          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA----------FKT  464 (729)
Q Consensus       395 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~  464 (729)
                      ...++..++..|.|..++-++..           ...+.+.+.-+.||....+|..|+..++..++-          .-+
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~~-----------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLHK-----------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-----------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            45678888999999999887742           223345566788999999999999999988831          111


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                      ..--+..+.-..+..+|.++.+.|+.++|+.++......
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            111122334556788999999999999999999887654

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=82.92  E-value=31  Score=32.27  Aligned_cols=183  Identities=14%  Similarity=0.100  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCC
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRIY--EKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAP  551 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~  551 (729)
                      .-+..+|.+..+.++|++...+++++.+..  ...     .   ..-.+.|..+|-. .|....+...+....+... ..
T Consensus         9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL-----t---~EERnLLSvaYKNvig~rR~swRiissieqke~-~k   79 (260)
T 1o9d_A            9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL-----T---VEERNLLSVAYKNVIGARRASWRIISSIEQKEE-SR   79 (260)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC-----C---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-cc
Confidence            445678899999999999999999988863  111     1   1222333333322 2333444444433222211 11


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCChHHHHHHHHHHHHHHHc-----C-----CHHH
Q 004811          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKSAFFGVALNQMGLACVQR-----Y-----SINE  618 (729)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~  618 (729)
                      +...     ...+..-|... =-.+-..+....+.+.....   ...+......+-..|..|.-.     |     -.+.
T Consensus        80 ~~~~-----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~  153 (260)
T 1o9d_A           80 GNEE-----HVNSIREYRSK-IENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES  153 (260)
T ss_dssp             TCHH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CcHH-----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence            2111     11111111111 11222333444555443321   111111222233345544422     2     2367


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004811          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  672 (729)
                      |...|+.|.++......|.||-......+.+.+|.. +++.++|..+.++++.-.
T Consensus       154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            899999999999888888999988888888877765 799999999988887654

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=82.83  E-value=31  Score=32.18  Aligned_cols=184  Identities=12%  Similarity=0.052  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCC
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      .-+..+|.+..+.++|++...+.+++.+.....        ...-.+.|..+|-. .|....+...+....+... ..|.
T Consensus        32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eL--------t~EERNLLSvAYKNvIgarR~swRiissieqkee-~~g~  102 (261)
T 3ubw_A           32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQKEE-NKGG  102 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhh-cccc
Confidence            345667888899999999999999887652221        12223334444422 2333334443332222211 1121


Q ss_pred             CCcHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHh--C-CCCChHHHHHHHHHHHHHHHc-----C-----CHHHH
Q 004811          554 QSTVAGIEAQMGVMYYMLGNY-SDSYDSFKNAISKLRAI--G-ERKSAFFGVALNQMGLACVQR-----Y-----SINEA  619 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A  619 (729)
                      ...     ..+..-|.  .+. .+-.......+.+....  . ...+......+-..|..|.-.     |     -.+.|
T Consensus       103 ~~~-----~~~i~~yr--~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a  175 (261)
T 3ubw_A          103 EDK-----LKMIREYR--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENS  175 (261)
T ss_dssp             HHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHH
Confidence            110     11111111  111 11223344444444332  0 011111122233345554422     1     24678


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004811          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  674 (729)
                      ...|++|.++......|.||-......+.+..|.. +++.++|..+.++|+.-.-.
T Consensus       176 ~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~  231 (261)
T 3ubw_A          176 LVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA  231 (261)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            89999999999888889999988888888877665 79999999999988765433

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=82.61  E-value=6.9  Score=29.59  Aligned_cols=49  Identities=20%  Similarity=0.045  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  269 (729)
                      .+..+...|...-..|+ |++|+.+|..|++.+-......+++..-..+.
T Consensus        15 ~A~~lv~~Ave~D~~g~-y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr   63 (86)
T 4a5x_A           15 AAATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTKRCNLR   63 (86)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            34567788888888886 99999999999999887766556655433333

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=82.52  E-value=29  Score=31.62  Aligned_cols=182  Identities=13%  Similarity=0.043  Sum_probs=95.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004811          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAEVAS  433 (729)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (729)
                      .+|.+..+.++|++...+.+++..........-..   .-.+.+..+|-. .|....+...+....+.  ..+...    
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~---EERnLLSvAYKNvig~rR~swRiissiEqk--ek~~~~----   81 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQEQTK--QLNNDE----   81 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCSCHH----
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCH---HHHHHHHHHHHHhhcccHHHHHHHHHHHHH--HcCCHH----
Confidence            67888889999999999999988731111111111   224444444422 12222222222211110  011111    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHhcCC
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-----RTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                       ...+..-|... =-.+-...+...+.+.....-+........+-..|..|.     ..|+.+.|...|+.|.++....+
T Consensus        82 -~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L  159 (227)
T 2o8p_A           82 -LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP  159 (227)
T ss_dssp             -HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred             -HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC
Confidence             11111112111 112234456666666665543332122233334455554     35678899999999999987654


Q ss_pred             CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 004811          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (729)
                      +..++-....+++.-...|.-+++.++|..+.++|+.+.
T Consensus       160 ~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          160 DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            333333344444444445556899999999999998764

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=81.98  E-value=31  Score=31.69  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHH
Q 004811          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  675 (729)
                      .+.|...|++|.++......|.||-......+.+..|.. +++.++|..+.++++.-.-..
T Consensus       146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~e  206 (234)
T 2br9_A          146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAE  206 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            467899999999999888888999988888888877765 899999999999988654443

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=81.27  E-value=34  Score=31.66  Aligned_cols=184  Identities=14%  Similarity=0.096  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCC
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      -+..+|.+..+.++|++...+.+++...-...        ...-.+.|..+|-. .|....+...+....+... ..+..
T Consensus         6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissieqke~-~~~~~   76 (248)
T 3uzd_A            6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPL--------SNEERNLLSVAYKNVVGARRSSWRVISSIEQKTS-ADGNE   76 (248)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhh-ccCCH
Confidence            34567888899999999999998887752221        12223334444432 2333444444432222211 11222


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCC--hHHHHHHHHHHHHHHHc-----C-----CHHHH
Q 004811          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKS--AFFGVALNQMGLACVQR-----Y-----SINEA  619 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~--~~~~~~~~~la~~~~~~-----g-----~~~~A  619 (729)
                      ....     +..-|... =-.+-..+....+.+.....   ...+  ......+-..|..|.-.     |     -.+.|
T Consensus        77 ~~~~-----~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a  150 (248)
T 3uzd_A           77 KKIE-----MVRAYREK-IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS  150 (248)
T ss_dssp             C-HH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHH-----HHHHHHHH-HHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence            1111     11111100 00122233444444443320   1112  12223334445555422     1     24678


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004811          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  674 (729)
                      ...|+.|.++......|.||-......+.+..|.. +++.++|..+.++|+.-.-.
T Consensus       151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~  206 (248)
T 3uzd_A          151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA  206 (248)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999888889999988888888777665 79999999999988765443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.62  E-value=3.7  Score=38.59  Aligned_cols=58  Identities=19%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       651 ~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      -+.+.|..++|++.....++-        +|.++.....|..+++-.|+++.|. +.++.+.+++|+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~-~QL~~~a~l~p~   63 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERAD-EQLMQSIKLFPE   63 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCch
Confidence            356789999999999988864        7999999999999999999999999 999999999998

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=80.30  E-value=25  Score=34.93  Aligned_cols=80  Identities=15%  Similarity=0.076  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004811          432 ASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (729)
Q Consensus       432 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (729)
                      ..++.+||.+-...-  ....++..|++|+...+..+...+   ..-|..+|-.+.+.+++.+|+..+-++-........
T Consensus       262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY  338 (489)
T 4gq4_A          262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY  338 (489)
T ss_dssp             HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred             chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccc
Confidence            344445554443221  122467899999999998885433   567888899999999999999999999988776543


Q ss_pred             CCChH
Q 004811          510 GVPPE  514 (729)
Q Consensus       510 ~~~~~  514 (729)
                      ..++.
T Consensus       339 ~reDe  343 (489)
T 4gq4_A          339 CREDE  343 (489)
T ss_dssp             CTTCH
T ss_pred             ccchH
Confidence            43333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	729
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-23
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-21
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-21
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-18
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-10
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-10
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.004
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 5e-23
 Identities = 57/475 (12%), Positives = 138/475 (29%), Gaps = 89/475 (18%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
            ++ A     +GD  + A    ++  +            +    L ++++I+    + + 
Sbjct: 2   PMELAHREYQAGDF-EAAERHCMQLWRQEP---------DNTGVLLLLSSIHFQCRRLDR 51

Query: 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343
           +      +I+                 +  L + Y+ LG +          +E  +  L 
Sbjct: 52  SAHFSTLAIKQ----------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95

Query: 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403
                +       A            Q +                           +  +
Sbjct: 96  LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL---------------YCVRSD 140

Query: 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
                +A        +  + A +     A    ++G  + +      A   ++KA+    
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV---- 196

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523
                  P     ++ L ++         + +    AL +             A    ++
Sbjct: 197 ----TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---------AVVHGNL 243

Query: 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583
           + +Y     ++ AI   ++A+++                 +       G+ +++ D +  
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPH-------FPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
           A+        R       +LN +     ++ +I EAV L+ +A  +         P+   
Sbjct: 297 AL--------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA 340

Query: 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
            +SNLA      G+L +A+   +  + I        +P   D    +   LKE  
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 7/68 (10%)

Query: 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578
           G  +++       + E A +   +  +   D  G       +   +  +++       S 
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTG-------VLLLLSSIHFQCRRLDRSA 53

Query: 579 DSFKNAIS 586
                AI 
Sbjct: 54  HFSTLAIK 61

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 95.4 bits (235), Expect = 1e-21
 Identities = 43/366 (11%), Positives = 109/366 (29%), Gaps = 17/366 (4%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
             + A +  + G  +EA  + + ++E           +A       LG+     G+L  S
Sbjct: 15  NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA----TSVLGEVLHCKGELTRS 70

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           L       ++ +Q   +       +    +E          A +  + A  +  +     
Sbjct: 71  LALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 128

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
                   R+   +       + A      + + ++++ Q  +       +    L+   
Sbjct: 129 LPMHEFLVRIRAQLLWAWARLDEAEASA-RSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 187

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507
            D A     +           +   +++        +  TG    + ++  +  +     
Sbjct: 188 LDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246

Query: 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567
              +  +               + E E A  +L++  +    +    S +      +  +
Sbjct: 247 NHFLQGQWRNIAR-----AQILLGEFEPAEIVLEELNENAR-SLRLMSDLNRNLLLLNQL 300

Query: 568 YYMLGNYSDSYDSFKNAISKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEA 626
           Y+  G  SD+     +A+      G        G A+ Q     +Q  ++ E  +    A
Sbjct: 301 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ--HRA 358

Query: 627 RSILEQ 632
           + IL +
Sbjct: 359 QRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 93.8 bits (231), Expect = 4e-21
 Identities = 43/368 (11%), Positives = 100/368 (27%), Gaps = 14/368 (3%)

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           D    E     A+  +      EA++  ++AL+                  ++G +   K
Sbjct: 8   DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCK 64

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           G+   +L  +         +D             +   +      A    +KA       
Sbjct: 65  GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
             E  P    +    A +     +L       E + R   + +    P++    L  +  
Sbjct: 125 HLEQLPMHEFLVRIRAQLLWAWARLD----EAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
              +  +L+ A   L +   +  +       ++       + + M G+ + + +  ++  
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
                     + F       +  A +       A  + EE              D     
Sbjct: 241 ----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN--ARSLRLMSDLNRNL 294

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGI-REEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704
             L   Y   GR  DA  +L   + +       +      +   +    L +   +   +
Sbjct: 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354

Query: 705 AQSLETLL 712
               + +L
Sbjct: 355 QHRAQRIL 362

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 85.0 bits (208), Expect = 3e-18
 Identities = 39/333 (11%), Positives = 101/333 (30%), Gaps = 17/333 (5%)

Query: 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275
           +          +A+  I+ G+ P +A  LA  A +              ++   V+  + 
Sbjct: 7   EDTMHAEFNALRAQVAINDGN-PDEAERLAKLALEELP----PGWFYSRIVATSVLGEVL 61

Query: 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL 335
              G+   ++ +++Q+ ++    +   +AL      +Q  +     G L+ +        
Sbjct: 62  HCKGELTRSLALMQQTEQMARQHDVWHYAL---WSLIQQSEILFAQGFLQTAWETQEKAF 118

Query: 336 EVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
           ++  +   E  P      R  A+      +  EA+   +  +++         L+     
Sbjct: 119 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ--CLA 176

Query: 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
            L+           A  +   L ++          +++ +      +        A    
Sbjct: 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
           +            N+  +   +  +A      G+   ++   E                +
Sbjct: 237 RHTAKPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSD 289

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548
           +   L  ++ +Y        A ++L  ALK+ N
Sbjct: 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 22/236 (9%), Positives = 51/236 (21%), Gaps = 10/236 (4%)

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
            +        + + A +  +  + +EA       IE+    + Q+               
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
             +                            +    +            + A  + +   
Sbjct: 186 GDLDNARSQLNRLEN-----LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
                N            R +       G+ E A   L   +    +    +++      
Sbjct: 241 KPEFANNHF----LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296

Query: 438 IGDTYLSLSRYDEAGFAYQKALT-AFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
           +   Y    R  +A      AL  A +T    +         +      +   L E
Sbjct: 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 36/243 (14%), Positives = 72/243 (29%), Gaps = 18/243 (7%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           E A +       Y      + AG ++ KA    K  K  N     + +V     +   G 
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQK--KAGNEDEAGNTYVEAYKCFKSGGN 92

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
              +    ENA++I+               L ++  +   +++  +AI   + A + Y  
Sbjct: 93  SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI--LENDLHDYAKAIDCYELAGEWYA- 149

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609
                +       +   +  + G Y ++ D +   I         + +       + GL 
Sbjct: 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD-YFLKKGLC 208

Query: 610 CVQRYSINEAVELFEEARSI------------LEQECGPYHPDTLGVYSNLAGTYDAIGR 657
            +       A    +E +S             L+      +       S     +D   R
Sbjct: 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268

Query: 658 LDD 660
           LD 
Sbjct: 269 LDK 271

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 29/236 (12%), Positives = 65/236 (27%), Gaps = 10/236 (4%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           Q    Y +  +L  +   +    + QK+     +   G T     +          A   
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432
            + A+ I    G            L  ++     D+  A++   LA      +   A   
Sbjct: 100 LENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
                  D      +Y EA   Y K + +   N+  +  ++   F++             
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVA 217

Query: 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKI 546
           +    +          P       ++ L  +       +  +L +  K     +++
Sbjct: 218 AARTLQEGQSED----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 4/153 (2%)

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
           EE A      ++IY    EL  A     KA        G +        +    +   GN
Sbjct: 34  EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGN 92

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
             ++ DS +NAI      G +             +     +   +A++ +E A     Q+
Sbjct: 93  SVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                  +   +   A      G+  +A +I  
Sbjct: 152 Q--SVALSNKCFIKCADLKALDGQYIEASDIYS 182

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 6e-10
 Identities = 28/271 (10%), Positives = 70/271 (25%), Gaps = 52/271 (19%)

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
            ++   L Q+  +       +   +     +   + +     L+          ++ +++
Sbjct: 3   LQSAQYLRQAEVLK-----ADMTDS----KLGPAEVWTSRQALQ----------DLYQKM 43

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           L  TD           E  +    F       Q      K+  +P   E  A   L   +
Sbjct: 44  L-VTDLEYALD--KKVEQDLWNHAFKNQITTLQ---GQAKNRANPNRSEVQA--NLSLFL 95

Query: 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461
               G +   L+ L          + D         +G      +           + + 
Sbjct: 96  EAASGFYTQLLQEL------CTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS- 148

Query: 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
                           V L D+     +  +++SY  +A ++                  
Sbjct: 149 ---------YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP---------SNGQPYN 190

Query: 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
            ++ +  S  +    I    +++ +    P 
Sbjct: 191 QLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 31/241 (12%), Positives = 60/241 (24%), Gaps = 46/241 (19%)

Query: 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483
           A    A++        + + S     +    YQK L                     A  
Sbjct: 12  AEVLKADMTDSKLGPAEVWTSRQALQDL---YQKML--------VTDL-------EYALD 53

Query: 484 YNRTGKLRESKSY-CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
                 L           L+   K        E+ + L+    +  +     Q ++ L  
Sbjct: 54  KKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLF--LEAASGFYTQLLQELCT 111

Query: 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602
              +      + S       Q+G++     + S       ++ S +              
Sbjct: 112 VFNVDLPCRVKSS-------QLGIISNKQTHTSAIVKPQSSSCSYICQ----------HC 154

Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
           L  +G     R   ++A   +  A  +         P     Y+ LA    + G     I
Sbjct: 155 LVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTI 206

Query: 663 E 663
            
Sbjct: 207 F 207

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 15/154 (9%), Positives = 40/154 (25%), Gaps = 35/154 (22%)

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--------------- 579
           Q+ + L++A  +       ++ +   +     ++       D Y                
Sbjct: 4   QSAQYLRQAEVL-------KADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKV 56

Query: 580 -------SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
                  +FKN I+ L+   + ++       N+  +       +  A   + +    L  
Sbjct: 57  EQDLWNHAFKNQITTLQGQAKNRAN-----PNRSEVQANLSLFLEAASGFYTQLLQELCT 111

Query: 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                        S L    +        ++   
Sbjct: 112 VFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQS 144

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 43/309 (13%), Positives = 83/309 (26%), Gaps = 44/309 (14%)

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
           GL    +GD   A+     A        QD +       +G T     +   A  A ++ 
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAV------QQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79

Query: 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518
           L     N+        S                       + LR        V P E  +
Sbjct: 80  LELKPDNQTALMALAVSFTNESLQRQACE--------ILRDWLRYTPAYAHLVTPAEEGA 131

Query: 519 GLTDVSSIY------ESMNELEQAIKLLQKALKIYND------------APGQQSTVAGI 560
           G   +           S +   +  +L   A+++                          
Sbjct: 132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF---------FGVALNQMGLACV 611
                    +  N    ++     ++      E  +A+         +  +   +G++C+
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251

Query: 612 QRYSINEAVELFEEARSILEQECGPYHPD---TLGVYSNLAGTYDAIGRLDDAIEILEFV 668
              +  EAVE F EA ++  +  GP       +  ++S L      +G+ D         
Sbjct: 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311

Query: 669 VGIREEKLG 677
           +       G
Sbjct: 312 LSTLLTMFG 320

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 36/322 (11%), Positives = 86/322 (26%), Gaps = 35/322 (10%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                  G    A+ + E +++        +H  A       LG T A   Q   ++   
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEA----WQYLGTTQAENEQELLAISAL 76

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              LE++          +  +    +          +  ++      +       A    
Sbjct: 77  RRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 135

Query: 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451
               + +     +        E  + A    +  D  +    V C +G  +     YD+A
Sbjct: 136 LGPSKRILGSLLSDSLFLEVKELFLAA----VRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
              +  AL+    +    +                  +  E+ +    AL +        
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLG--------ATLANGNQSEEAVAAYRRALELQPG----- 238

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----MGVM 567
                     ++     ++    +A++   +AL +   + G +     +       + + 
Sbjct: 239 ----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 294

Query: 568 YYMLGNYSDSYDSFKNAISKLR 589
             MLG       +    +S L 
Sbjct: 295 LSMLGQSDAYGAADARDLSTLL 316

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 28/204 (13%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
                I     S   + E   +   ++ +       +           LG  + + G+ +
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV-------QCGLGVLFNLSGEYD 189

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
            ++ C+T  L V+                 L        Q  EA    + AL++      
Sbjct: 190 KAVDCFTAALSVRPND--------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-- 239

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLA-----SMTMIANDQDAEVASVDCSIGD 440
                    R  +G+ C   G H  A+EH + A            +  A   ++  ++  
Sbjct: 240 ------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293

Query: 441 TYLSLSRYDEAGFAYQKALTAFKT 464
               L + D  G A  + L+   T
Sbjct: 294 ALSMLGQSDAYGAADARDLSTLLT 317

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM--QLGDTYAMLG 322
           +   + +     +LG + EA+    +++ +     G        + ++   L    +MLG
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 323 QLENSLMCYTTGLEVQKQVLG 343
           Q +         L     + G
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 26/157 (16%)

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           +     + + A+         +          + I   +G MY +L N +++  +F  +I
Sbjct: 14  LAADKKDWKGALDAFSAVQDPH----------SRICFNIGCMYTILKNMTEAEKAFTRSI 63

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE--------QECGPY 637
           ++ + +             Q G+   Q    + A++  +EA   L              +
Sbjct: 64  NRDKHLAVAY--------FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 115

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674
                 V  N+A  Y        A E L     ++ E
Sbjct: 116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 26/171 (15%)

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
           SL EA      G++   K D + AL+            D  + +     +IG  Y  L  
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAF------SAVQDPHSRIC---FNIGCMYTILKN 51

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI---- 503
             EA  A+ +++             +A  + +   +Y +T K   +    + AL      
Sbjct: 52  MTEAEKAFTRSI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

Query: 504 ----YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
               Y+              L +++ +Y    E ++A + L  A  + ++ 
Sbjct: 104 QLIDYKILGLQFKLFACEV-LYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 28/166 (16%)

Query: 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320
           SL   + L     +      +  A+       +         H+         +G  Y +
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRI----CFNIGCMYTI 48

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
           L  +  +   +T  +   K         +          + Q  ++  A K  + AL   
Sbjct: 49  LKNMTEAEKAFTRSINRDKH--------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 100

Query: 381 KDNGSPASLEEAADRRL--------MGLICETKGDHEAALEHLVLA 418
           + N            +L        +  +   K + + A E L LA
Sbjct: 101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 39/305 (12%), Positives = 73/305 (23%), Gaps = 52/305 (17%)

Query: 397 LMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
           ++ +  +     E  L  +  +LAS        D E A +    G  Y SL     A   
Sbjct: 4   VLAVPLQPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSLGLRALARND 59

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           + +A            P +  VF  L     + G    +    ++ L +           
Sbjct: 60  FSQA--------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
            IA                + A   L    +   + P +          + +    L   
Sbjct: 112 GIA---------LYYGGRDKLAQDDLLAFYQDDPNDPFRS-------LWLYLAEQKLDEK 155

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
                  ++           K  +    +        ++  +        +         
Sbjct: 156 QAKEVLKQHFEKS------DKEQWGWNIVEFYLGNISEQTLMERLKADATDNT------- 202

Query: 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694
                        L   Y ++G LD A  + +  V          N     E R     L
Sbjct: 203 -SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFVEHRYALLEL 253

Query: 695 KEAGR 699
              G+
Sbjct: 254 SLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 8/236 (3%)

Query: 230 ELISSGDNPQKALELAL-RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288
           E+++    P    E+ L R  +     A      E    L+    +Y SLG    A    
Sbjct: 3   EVLAVPLQPTLQQEVILARMEQILASRALTDD--ERAQLLYERGVLYDSLGLRALARNDF 60

Query: 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348
            Q++ I        + L  +       D           L        + + +      R
Sbjct: 61  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120

Query: 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH 408
                  L   +           +  +A     +  +   L++  ++           + 
Sbjct: 121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 180

Query: 409 EAALEHLVLASMTMIANDQDA-----EVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
                        + A+  D       ++  +  +G  YLSL   D A   ++ A+
Sbjct: 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 29/180 (16%)

Query: 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
           S  +L+QA++LL +A+K            A + +    +  + G++         A  +L
Sbjct: 8   SEGQLQQALELLIEAIKASPKD-------ASLRSSFIELLCIDGDFER-------ADEQL 53

Query: 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648
               +    +   A     L         +A +  ++              + L      
Sbjct: 54  MQSIKLFPEYLPGASQLRHLV--------KAAQARKDFAQGAATAKVLGENEELTKSLVS 105

Query: 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANP-------DVDDEKRRLAELLKEAGRVR 701
                     +   E+   +  +R+EK   AN        D+DD      EL   AG   
Sbjct: 106 FNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFSTAGNYF 165

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 27/182 (14%), Positives = 53/182 (29%), Gaps = 32/182 (17%)

Query: 227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIP 286
           Q +  +S G   Q+ALEL + A K+        P  +          + C  G +  A  
Sbjct: 2   QWKNALSEGQ-LQQALELLIEAIKA-------SP--KDASLRSSFIELLCIDGDFERADE 51

Query: 287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346
            L QSI++                  +     + L  L  +        +         +
Sbjct: 52  QLMQSIKL----------------FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

Query: 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAA-----DRRLMGLI 401
                         + +  + +  +      ++ ++ G  A+    +     D RL G  
Sbjct: 96  NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRL-GGY 154

Query: 402 CE 403
            E
Sbjct: 155 IE 156

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G+       +D A   Y KA         E  P   +     A +Y   G   + +  C
Sbjct: 10  LGNDAYKKKDFDTALKHYDKA--------KELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
           E A+ +  +          A     + + Y    + + AI    K+L  +   
Sbjct: 62  EKAIEVGRENREDYRQIAKAY--ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 24/149 (16%)

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           ++A   + +G     K D + AL+H         A + D    +   +    Y     Y+
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHY------DKAKELDPTNMTYITNQAAVYFEKGDYN 55

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           +     +KA+   + N  E++  +A  + R+ + Y +  K +++  +   +L  +  P  
Sbjct: 56  KCRELCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-- 112

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIK 538
                           + +   + E+ +K
Sbjct: 113 ---------------DVLKKCQQAEKILK 126

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 28/326 (8%), Positives = 72/326 (22%), Gaps = 54/326 (16%)

Query: 224 LLKQARELISSGDNPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ 280
             +   +   +G+  +  LEL    L A   F    N +   E++  L    +   S   
Sbjct: 31  ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR--EVLQHLETEKSPEESAAL 88

Query: 281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340
               +  LE  + +             +          + L +       +   LE+  +
Sbjct: 89  VKAELGFLESCLRVNPKS---------YGTWHHRCWLLSRLPE-----PNWARELELCAR 134

Query: 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400
            L   +            A   A+  +E   F    +  +  N S               
Sbjct: 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS--------WHYRSC 186

Query: 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
           +         +     L    ++              +          D++ + Y +   
Sbjct: 187 LLPQLHPQPDSGPQGRLPENVLLKE----------LELVQNAFFTDPNDQSAWFYHR--- 233

Query: 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520
                                +         ES    +      +              +
Sbjct: 234 -----WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW---------CLLTI 279

Query: 521 TDVSSIYESMNELEQAIKLLQKALKI 546
             +    + +   ++ ++       +
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAV 305

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 23/242 (9%), Positives = 45/242 (18%), Gaps = 35/242 (14%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
                S +         +  L     +                               C 
Sbjct: 80  KSPEESAALVKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCA 133

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
             L   E+                            QA     + L   +    +  +  
Sbjct: 134 RFLEADERNFH---------------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178

Query: 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE-----RKSAFFGVALNQMGLACVQR 613
                   +   L    DS    +   + L    E       +     +        + R
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238

Query: 614 YSINEAVELFEEARSILEQ---------ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664
                  EL  E  ++L+          E  P +   L     L    D +    + ++ 
Sbjct: 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 298

Query: 665 LE 666
             
Sbjct: 299 FS 300

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G+  LS+   D+A   Y +A+     N        A+   +           +      +
Sbjct: 10  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
                  K                  +  E +N  E+A +  ++ LK   + P  +  + 
Sbjct: 70  WGKGYSRKA-----------------AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112

Query: 559 GIEAQ 563
            +EA+
Sbjct: 113 NMEAR 117

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
           ++ +  +S+    +    +Q               A  SV       Y            
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEK------------AAGSVSKSTQFEYAWCLVRTRYNDD 51

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556
               + + E+ +P    EE    +  ++     + E E+A+K ++  L+        +  
Sbjct: 52  IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111

Query: 557 VAGIEAQMG 565
              I+  M 
Sbjct: 112 ERLIDKAMK 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	729
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.8
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.71
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.38
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.35
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.31
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.31
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.28
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.26
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.24
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.23
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.2
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.18
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.08
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.01
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.94
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.93
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.91
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.47
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.44
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.22
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.76
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.18
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.53
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	95.53
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	94.78
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.58
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	94.58
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	92.78
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	92.57
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	90.62
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.67
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	87.82
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	86.38
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.87

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=292.92  Aligned_cols=387  Identities=19%  Similarity=0.213  Sum_probs=335.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc
Q 004811          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (729)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (729)
                      ++.+|..+++.|+ |++|+..|+++++..         |....++..+|.+|...|++++|+.+|++++++.     +..
T Consensus         2 ll~la~~~~~~G~-~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~   66 (388)
T d1w3ba_           2 PMELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL   66 (388)
T ss_dssp             CCTHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             hHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Confidence            3568999999997 999999999999863         4456789999999999999999999999999886     333


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (729)
Q Consensus       304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (729)
                      +    .++..+|.+|..+|++++|+..+..++..        .+.........+........+..+..............
T Consensus        67 ~----~a~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (388)
T d1w3ba_          67 A----EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL  134 (388)
T ss_dssp             H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred             H----HHHHHHHHHhhhhcccccccccccccccc--------cccccccccccccccccccccccccccccccccccccc
Confidence            3    35899999999999999999999999988        57777778888888888888888777776665544333


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (729)
Q Consensus       384 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (729)
                      .        ......+......+....+...+.+.+..      .+....++..+|.++...|++++|...+++++.+  
T Consensus       135 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--  198 (388)
T d1w3ba_         135 Y--------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--  198 (388)
T ss_dssp             T--------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--
T ss_pred             c--------cccccccccccccchhhhhHHHHHHhhcc------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--
Confidence            2        34667778888889999999988877643      4556678899999999999999999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (729)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (729)
                            +|....++..+|.++...|++++|+..++++...         .+.....+..+|.++...|++++|+.+|+++
T Consensus       199 ------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         199 ------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             ------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH---------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                  7888999999999999999999999999999988         2334667889999999999999999999999


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (729)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  623 (729)
                      +++.+..       ..++..+|.++...|++++|+..|+.++...        +.....+..+|.++...|++++|+.+|
T Consensus       264 l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~  328 (388)
T d1w3ba_         264 IELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--------CccchhhhHHHHHHHHCCCHHHHHHHH
Confidence            9876544       5788999999999999999999999988752        224578889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 004811          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (729)
Q Consensus       624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (729)
                      ++++++        +|+...++..+|.+|..+|++++|+.+|++++++        +|+...++.+||.+|.++||
T Consensus       329 ~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         329 RKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence            999988        8899999999999999999999999999999976        78899999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-32  Score=282.78  Aligned_cols=379  Identities=18%  Similarity=0.244  Sum_probs=327.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004811          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (729)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (729)
                      ..+|..+++.|+|++|+..|+++++..     +.++    .++..+|.+|..+|++++|+.+|+++++.        +|.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~   65 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPL   65 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            357899999999999999999999875     3433    35899999999999999999999999998        788


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCC
Q 004811          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (729)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (729)
                      ...++..+|.+|...|++++|+..+..++...+...        ......+......+.+..+..........      .
T Consensus        66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  131 (388)
T d1w3ba_          66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI--------DGYINLAAALVAAGDMEGAVQAYVSALQY------N  131 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHSCSSHHHHHHHHHHHH------C
T ss_pred             CHHHHHHHHHHhhhhccccccccccccccccccccc--------ccccccccccccccccccccccccccccc------c
Confidence            999999999999999999999999999988765442        34566677777777777777666544322      1


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004811          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      ..........+......+....+...+.+.+..        .|....++..+|.++...|++++|...+++++++     
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  198 (388)
T d1w3ba_         132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----  198 (388)
T ss_dssp             TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----
T ss_pred             cccccccccccccccccchhhhhHHHHHHhhcc--------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh-----
Confidence            222244566777888899999999999998887        7888899999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                          .|....++..+|.++...|++++|+..++++....+..       ...+..+|.++...|++++|+.+|++++++.
T Consensus       199 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  267 (388)
T d1w3ba_         199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ  267 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             ----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                44457789999999999999999999999998875544       5678899999999999999999999999852


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004811          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (729)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (729)
                              +....++..+|.++...|++.+|+..|+.++..        .|....++..++.++...|++++|+.+|+++
T Consensus       268 --------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  331 (388)
T d1w3ba_         268 --------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             --------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence                    224578999999999999999999999999998        8888889999999999999999999999999


Q ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCcccccc
Q 004811          669 VGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIELCY  727 (729)
Q Consensus       669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~~y  727 (729)
                      +++        +|+...+++.+|.+|...|++++|+ ..|+++++++|+  ..+.+++.+|
T Consensus       332 l~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         332 LEV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             TTS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH
Confidence            965        6888999999999999999999999 999999999998  5666777665

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.7e-22  Score=206.27  Aligned_cols=353  Identities=12%  Similarity=0.050  Sum_probs=293.4

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Q 004811          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (729)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (729)
                      +..+++....|.++...|++++|+.+++++++..+..   .....+.++..+|.++...|++++|+..|++++.+....+
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~---~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC---CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            3456677778999999999999999999999987654   3344567899999999999999999999999999988888


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      +.+....++..++.++...|++..|...+.+++.+.........+.....+..+|.++...|+++.|...+.+++.....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence            88888999999999999999999999999999999988877777778888999999999999999999999999998765


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                      .    .......++..++..+...+++.++...+.++..+.............++..++.++...|++++|..++++++.
T Consensus       166 ~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  241 (366)
T d1hz4a_         166 Y----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK  241 (366)
T ss_dssp             S----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             h----hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3    244556788889999999999999999999999998877555556677788899999999999999999998876


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      ..    ...+......+..+|.++...|++++|..++++++........  .|....++..+|.+|..+|++++|+.+++
T Consensus       242 ~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         242 PE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             CC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hc----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            42    2233445667888999999999999999999999998877543  68888899999999999999999999999


Q ss_pred             HHHHHHHHHcCC-CChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004811          667 FVVGIREEKLGT-ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (729)
Q Consensus       667 ~al~~~~~~~g~-~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (729)
                      +++.+..+.--. ........+..+...+...++.+++..+..+.++
T Consensus       316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll  362 (366)
T d1hz4a_         316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL  362 (366)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            999987653110 0011233455566667778888888733444443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.5e-21  Score=196.98  Aligned_cols=345  Identities=11%  Similarity=0.008  Sum_probs=280.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 004811          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (729)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (729)
                      .+......|.+++..|++++|+.+|+++++..+    ...+...+.++..+|.++..+|++++|+..|++++.+....  
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~----~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--   84 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   84 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc----CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--
Confidence            455677789999999999999999999998762    22333455678999999999999999999999999987663  


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004811          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (729)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  423 (729)
                      .+.+....++..++.++...|++..|...+.+++.+.+..........+.++..+|.++...|+++.+...+.++.....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            23356677889999999999999999999999999999887777777788899999999999999999999999987665


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                      .... .....++..++..+...+++.++...+.++..+..... ...+....++..++.++...|++++|..++++++..
T Consensus       165 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  242 (366)
T d1hz4a_         165 SYQP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  242 (366)
T ss_dssp             TSCG-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             hhhh-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            5443 34567788899999999999999999999998876543 224556778888999999999999999999988765


Q ss_pred             HhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004811          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (729)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (729)
                      ..     ...+.....+.++|.++...|++++|+.++++++...... +..+....++..+|.+|...|++++|+.++++
T Consensus       243 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         243 EF-----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             CC-----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cc-----ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            32     2344556778899999999999999999999999998876 56667778899999999999999999999999


Q ss_pred             HHHHHHHhCCCCChH-HHHHHHHHHHHHHHcCCHHHHHHH
Q 004811          584 AISKLRAIGERKSAF-FGVALNQMGLACVQRYSINEAVEL  622 (729)
Q Consensus       584 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~  622 (729)
                      ++.+.+..+...... ....+..+...+...++.+++...
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999988765432110 122344444555566766666543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-22  Score=203.71  Aligned_cols=283  Identities=16%  Similarity=0.113  Sum_probs=224.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (729)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (729)
                      .+..|..++..|++++|+..|+++++..     |.++    .+|..+|.++...|++++|+.+|.+++++        +|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHM----EAWQYLGTTQAENEQELLAISALRRCLEL--------KP   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCChHHHHHHHHhhhcc--------cc
Confidence            4578999999999999999999999886     4443    35999999999999999999999999998        78


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH-HHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004811          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL-EEAA------DRRLMGLICETKGDHEAALEHLVLASM  420 (729)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~a~------~~~~lg~~~~~~g~~~~A~~~~~~al~  420 (729)
                      .....+..+|.+|...|++++|+..+++++...+........ ....      ........+...+.+.+|+..|.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999887653221100 0000      111122334556778889999988876


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (729)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (729)
                      ...   . .....++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|+++
T Consensus       165 ~~p---~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         165 LDP---T-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HST---T-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hhh---c-ccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHHH
Confidence            421   1 223567889999999999999999999999998        7888999999999999999999999999999


Q ss_pred             HHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC----cHHHHHHHHHHHHHHcCCHHH
Q 004811          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS----TVAGIEAQMGVMYYMLGNYSD  576 (729)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~  576 (729)
                      +++         .|....++..+|.+|...|++++|+.+|++++++.|+..+...    ....++..++.++...++.+.
T Consensus       233 l~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         233 LEL---------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHH---------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            998         3445778999999999999999999999999999997644321    233456677888888888877


Q ss_pred             HHHHHHHHHHHH
Q 004811          577 SYDSFKNAISKL  588 (729)
Q Consensus       577 A~~~~~~al~~~  588 (729)
                      +.....+.+..+
T Consensus       304 ~~~~~~~~l~~l  315 (323)
T d1fcha_         304 YGAADARDLSTL  315 (323)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHHhCHHHH
Confidence            666655555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-22  Score=203.95  Aligned_cols=252  Identities=12%  Similarity=0.083  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (729)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (729)
                      .+..|..++..|++++|+..|+++++.        +|....+|..+|.++...|++++|+.+|.+++++         .|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---------KP   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc---------cc
Confidence            467899999999999999999999997        8889999999999999999999999999999998         34


Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCc--HHH------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST--VAG------IEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~------~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                      .....+..+|.+|...|++++|+..+++++.+.+........  ...      ........+...+.+.+|+..|.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999876643111110  000      111222344566778889999998887


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      +.+.      ...+.++..+|.++...|++++|+.+|++++..        +|+...++..+|.+|..+|++++|+.+|+
T Consensus       165 ~~p~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         165 LDPT------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HSTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Hhhc------ccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHH
Confidence            5221      113567889999999999999999999999998        88899999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc--cCCCccccc
Q 004811          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDGIELC  726 (729)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~l~~~  726 (729)
                      +++++        +|....+++.||.+|...|++++|+ ..|+++++++|+  .....++.+
T Consensus       231 ~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~~~~~~~~~~~  283 (323)
T d1fcha_         231 RALEL--------QPGYIRSRYNLGISCINLGAHREAV-EHFLEALNMQRKSRGPRGEGGAM  283 (323)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHTC------CCCC
T ss_pred             HHHHH--------hhccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCcChhhhhhhHHH
Confidence            99987        6888899999999999999999999 999999999998  334444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.5e-18  Score=172.16  Aligned_cols=241  Identities=11%  Similarity=0.081  Sum_probs=200.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhc
Q 004811          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYEK  506 (729)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  506 (729)
                      .|....++..+|.++...+.+++|+..+++++++        +|....+|..+|.++...|+ +++|+.++++++++   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            5677888999999999999999999999999999        89999999999999998874 89999999999999   


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                            .|....+|..+|.++..+|++++|+.++.+++++.+..       ..+|.++|.++...|++++|+.+|+++++
T Consensus       108 ------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-------~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         108 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             ------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                  55568899999999999999999999999999987776       57899999999999999999999999998


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (729)
                      +        .+....+|+++|.++...+.      +++|+..+.+++.+        +|....++..++.++...| ..+
T Consensus       175 ~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~~~  237 (315)
T d2h6fa1         175 E--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-LSK  237 (315)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-GGG
T ss_pred             H--------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-hHH
Confidence            7        22345788999999887765      68999999999999        8999999999998876554 688


Q ss_pred             HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh--CCHhHHHHHHHHHHHhhcc
Q 004811          661 AIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA--GRVRSRKAQSLETLLDANS  716 (729)
Q Consensus       661 A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~--g~~~~A~~~~l~~al~~~p  716 (729)
                      +...+++++++.      ..+....++..++.+|...  ++.+.+. ..+++++++.+
T Consensus       238 ~~~~~~~~~~l~------~~~~~~~~~~~l~~~y~~~~~~~~~~~~-~~~~ka~~l~~  288 (315)
T d2h6fa1         238 YPNLLNQLLDLQ------PSHSSPYLIAFLVDIYEDMLENQCDNKE-DILNKALELCE  288 (315)
T ss_dssp             CHHHHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHTTCSSHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC------CCcCCHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHH
Confidence            889999888763      2234455667777777543  5666666 66777666543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-17  Score=167.16  Aligned_cols=263  Identities=11%  Similarity=0.010  Sum_probs=216.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Q 004811          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNK  466 (729)
Q Consensus       388 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~  466 (729)
                      .+..+.++..+|.++...+.+++|+..+.+++.+      .|....+|+.+|.++...| ++++|+.++++++++     
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-----  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----
Confidence            3456788999999999999999999999999875      6777889999999999987 599999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 004811          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (729)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (729)
                         +|....+|..+|.++..+|++++|+.++.+++++         .|....+|.++|.++...|++++|+.++++++++
T Consensus       108 ---~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~---------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         108 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ---HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh---------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence               8999999999999999999999999999999999         5556789999999999999999999999999999


Q ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q 004811          547 YNDAPGQQSTVAGIEAQMGVMYYMLGN------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV  620 (729)
Q Consensus       547 ~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  620 (729)
                      .+..       ..+|+++|.++...+.      +++|+..+.+++.+.        +....+|..++.++...+ ..++.
T Consensus       176 ~p~n-------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--------P~~~~~~~~l~~ll~~~~-~~~~~  239 (315)
T d2h6fa1         176 DVRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRG-LSKYP  239 (315)
T ss_dssp             CTTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTC-GGGCH
T ss_pred             CCcc-------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--------CCchHHHHHHHHHHHhcC-hHHHH
Confidence            7766       5788999999988776      678999999998872        224577888888866544 68888


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 004811          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (729)
Q Consensus       621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (729)
                      ..+++++++     .+ .+....++..++.+|..  .++.+.+...+.+++.++.......+|.....|..++..+.
T Consensus       240 ~~~~~~~~l-----~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~  310 (315)
T d2h6fa1         240 NLLNQLLDL-----QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  310 (315)
T ss_dssp             HHHHHHHHH-----TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-----CC-CcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            999998887     11 22334466777777754  47778889999999888766554556665555666665543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1e-16  Score=158.66  Aligned_cols=227  Identities=10%  Similarity=0.023  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (729)
Q Consensus       395 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (729)
                      |...|.+|...++|++|+..|.+++.+....++.+..+.++.++|.+|..+|++++|+.+|++++.++....  +.....
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~  117 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--cchhHH
Confidence            444577888999999999999999999999988899999999999999999999999999999999988764  355667


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          475 SVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       475 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      .++..+|.+|.. .|++++|+.+|++++++....   ...+....++.++|.++..+|+|++|+.+|++++...+.....
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~---~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc---CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            889999999865 699999999999999998763   3466678899999999999999999999999999988776555


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHH
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSI  629 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~  629 (729)
                      .......+..++.++...|++..|...+++++++.+......   ....+..+..++..  .+.+++|+..|.++.++
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr---e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            556667788899999999999999999999887654432211   12345556666554  34688888888776655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.7e-17  Score=156.96  Aligned_cols=225  Identities=13%  Similarity=0.040  Sum_probs=163.3

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004811          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (729)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (729)
                      +.+.|+..+.+++.  .....++..+.+++.+|.+|...|++++|+..|++++.+        +|..+.++..+|.+|..
T Consensus        14 ~~e~al~~~~e~l~--~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          14 QQEVILARMEQILA--SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHH
Confidence            34556666665532  111235667889999999999999999999999999999        78889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 004811          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (729)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (729)
                      +|++++|+..|++++++         .|....++.++|.++..+|++++|+..|++++++.+..       ......++.
T Consensus        84 ~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~  147 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLEL---------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------PFRSLWLYL  147 (259)
T ss_dssp             TTCHHHHHHHHHHHHHH---------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHH---------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-------HHHHHHHHH
Confidence            99999999999999999         34446789999999999999999999999999986543       234455666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004811          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (729)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (729)
                      .+...+..+.+.........    . .............++. ....+.+..+...+..+...        .|....+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  213 (259)
T d1xnfa_         148 AEQKLDEKQAKEVLKQHFEK----S-DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNF  213 (259)
T ss_dssp             HHHHHCHHHHHHHHHHHHHH----S-CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhhc----c-chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHHH
Confidence            66666665544443333222    1 2222211111111111 11223355555556665555        577778999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHH
Q 004811          647 NLAGTYDAIGRLDDAIEILEFVVGI  671 (729)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~  671 (729)
                      .||.+|..+|++++|+.+|++++..
T Consensus       214 ~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         214 YLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999965

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=1.4e-17  Score=168.98  Aligned_cols=275  Identities=9%  Similarity=-0.062  Sum_probs=219.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHHhcCC
Q 004811          316 DTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA----------LQFSEAQKFCQMALDIHKDNGS  385 (729)
Q Consensus       316 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~  385 (729)
                      ......+..++|+.++++++.+        +|+...+|...+.++...          |++++|+.++++++...|+.. 
T Consensus        37 ~~~~~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~-  107 (334)
T d1dcea1          37 QKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-  107 (334)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-
T ss_pred             HHHhcccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH-
Confidence            3333444458999999999998        788888887776665544          458899999999999876653 


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004811          386 PASLEEAADRRLMGLICETKGD--HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (729)
Q Consensus       386 ~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (729)
                             .++..+|.++...++  +++|+..+.+++..     +.......+..+|.++...+.+++|+.++++++.+  
T Consensus       108 -------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--  173 (334)
T d1dcea1         108 -------GTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (334)
T ss_dssp             -------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             -------HHHHHhhHHHHHhccccHHHHHHHHHHHHhh-----CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--
Confidence                   568888888877764  89999999999875     22223334567789999999999999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 004811          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (729)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (729)
                            +|....+|..+|.++...|++++|+..+.+++.+...         ..    .+...+...+..++|...+.++
T Consensus       174 ------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~----~~~~~~~~l~~~~~a~~~~~~~  234 (334)
T d1dcea1         174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK---------EL----ELVQNAFFTDPNDQSAWFYHRW  234 (334)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH---------HH----HHHHHHHHHCSSCSHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH---------HH----HHHHHHHHhcchhHHHHHHHHH
Confidence                  8899999999999999999999999999888888422         22    2334455667788899999998


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004811          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (729)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  623 (729)
                      +...+....       .+..++.++...|++.+|+..+.+++..        .+....++..+|.++...|++++|+.+|
T Consensus       235 l~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         235 LLGRAEPLF-------RCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             HHSCCCCSS-------SCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             HHhCcchhh-------HHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            876654422       2345678888889999999999888764        3456789999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (729)
                      ++++++        +|.....|..|+..+...
T Consensus       300 ~~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         300 STLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHH--------CcccHHHHHHHHHHHhHh
Confidence            999999        999999999998888753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=3.7e-16  Score=154.60  Aligned_cols=226  Identities=14%  Similarity=0.105  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (729)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (729)
                      |...|.+|...|+|++|+.+|.+++++.....  +.+..+.++.++|.+|...|++++|+.+|++++.++...   ....
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~---~~~~  114 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR---GQFR  114 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc---ccch
Confidence            34457889999999999999999999988765  456778999999999999999999999999999998874   3466


Q ss_pred             HHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004811          515 EIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (729)
Q Consensus       515 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (729)
                      ....++..+|.+|.. .|++++|+.+|++++.+.+.. +.......++..+|.++..+|+|++|+.+|++++........
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            677889999999865 699999999999999998876 555666788999999999999999999999999886544322


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004811          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVG  670 (729)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  670 (729)
                      . .......+..++.++...|++..|...+++++++.....   +......+..|..++..  .+.+++|+..|.++.+
T Consensus       194 ~-~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         194 S-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             T-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             h-hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            2 233456678889999999999999999999988722211   11122345566666655  3568888888876553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=9.4e-18  Score=170.32  Aligned_cols=272  Identities=8%  Similarity=-0.108  Sum_probs=218.8

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----------HHHhCCHHHHHHHHHHHHHHHHhCCCCh
Q 004811          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI----------CETKGDHEAALEHLVLASMTMIANDQDA  429 (729)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~----------~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (729)
                      ....+..++|+.++++++.+.|...        .+|+..+.+          +...|++++|+.++++++..      +|
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~P~~~--------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------~p  104 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGANPDFA--------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NP  104 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------CT
T ss_pred             HhcccccHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh------CC
Confidence            3333445899999999999887653        345444444          44455688999999988764      56


Q ss_pred             hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          430 EVASVDCSIGDTYLSLSR--YDEAGFAYQKALTAFKTNKGENHPAVASV-FVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       430 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      ....++..+|.++...++  +++|+..+++++.+        +|....+ +..+|.++...+.+++|+.++++++.+   
T Consensus       105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~---  173 (334)
T d1dcea1         105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---  173 (334)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---
T ss_pred             CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc---
Confidence            666788889988887764  89999999999998        5665555 457788999999999999999999888   


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (729)
                            +|....+|.++|.++..+|++++|+..+.+++.+.+..           ......+...+..+++...|.+++.
T Consensus       174 ------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----------LELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----------HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----------HHHHHHHHHhcchhHHHHHHHHHHH
Confidence                  45567889999999999999999999999988887764           2334455677888889999988876


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004811          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (729)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (729)
                      ...        .....+..+|.++...+++.+|+..+.+++..        +|....++..+|.+|..+|++++|+.+|+
T Consensus       237 ~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~  300 (334)
T d1dcea1         237 GRA--------EPLFRCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQYFS  300 (334)
T ss_dssp             SCC--------CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred             hCc--------chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            421        11235566788888899999999999999988        99999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 004811          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (729)
                      +++++        +|.....|..|+..+...
T Consensus       301 ~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         301 TLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHH--------CcccHHHHHHHHHHHhHh
Confidence            99988        798888898898877753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5.2e-16  Score=150.98  Aligned_cols=224  Identities=13%  Similarity=0.027  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHH
Q 004811          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (729)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (729)
                      .+.|+..+++++...     ...++..+.+++.+|.+|...|++++|+..|++++.+.     ++++    .+++.+|.+
T Consensus        15 ~e~al~~~~e~l~~~-----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-----p~~~----~a~~~lg~~   80 (259)
T d1xnfa_          15 QEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMP----EVFNYLGIY   80 (259)
T ss_dssp             HHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CCCH----HHHhhhchH
Confidence            445555555544321     12346778899999999999999999999999999986     4544    359999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004811          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (729)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (729)
                      |..+|++++|+..|++++.+        +|....++..+|.++..+|++++|+..|++++++.+...        .....
T Consensus        81 ~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~  144 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--------FRSLW  144 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------HHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH--------HHHHH
Confidence            99999999999999999999        788889999999999999999999999999999876432        33556


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (729)
Q Consensus       398 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (729)
                      ++..+...+....+.........   .....+........++. ....+.+..+...+......        .+....++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  212 (259)
T d1xnfa_         145 LYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETN  212 (259)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHH
Confidence            66667777665555444333221   12222222111111111 11223344455555555554        56777899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          478 VRLADMYNRTGKLRESKSYCENALRI  503 (729)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~  503 (729)
                      +.+|.+|...|++++|+.+|++++..
T Consensus       213 ~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         213 FYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999976

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.3e-14  Score=150.47  Aligned_cols=231  Identities=13%  Similarity=0.074  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004811          410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK  489 (729)
Q Consensus       410 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  489 (729)
                      +|+++|++|+.+      .|..+.++.++|.++..+|++.+|   |++++..        +|..+..+...+.+..  ..
T Consensus         4 eA~q~~~qA~~l------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~--~~   64 (497)
T d1ya0a1           4 QSAQYLRQAEVL------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWN--HA   64 (497)
T ss_dssp             HHHHHHHHHHHH------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHH--HH
T ss_pred             HHHHHHHHHHHc------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHH--HH
Confidence            688999999876      344556778899999999999876   7888877        6766665544333332  12


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 004811          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (729)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (729)
                      |..++..+++..+....    ....  ......++.++...+.|+.|+..+.+++.+.+..       ...+.++|..+.
T Consensus        65 y~~~ie~~r~~~k~~~~----~~~~--~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~-------~~~~~~lg~~~~  131 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRAN----PNRS--EVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC-------RVKSSQLGIISN  131 (497)
T ss_dssp             THHHHHHHHHHHSCSSC----TTTT--HHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred             HHHHHHHHHHhcccccC----ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh-------HHHHHHhHHHHH
Confidence            45566666655543111    1111  1122234555566667777777666666654433       466788999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004811          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (729)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (729)
                      ..|++++|...+.+++...          ...++..+|.++..+|++++|+.+|++|+.+        +|+...++++||
T Consensus       132 ~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg  193 (497)
T d1ya0a1         132 KQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLA  193 (497)
T ss_dssp             -----------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHH
Confidence            9999999999999988763          2367889999999999999999999999999        899999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                      .++...|++.+|+.+|.+++.+        .|....++.+|+.++....
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999865        4566777777777776544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-14  Score=152.01  Aligned_cols=282  Identities=10%  Similarity=-0.009  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004811          325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET  404 (729)
Q Consensus       325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~  404 (729)
                      -+|+++|++|+.+        .|+.+.++..+|.++..++++++|   |++++...+...        ..+...+.++  
T Consensus         3 ~eA~q~~~qA~~l--------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a--------~~~~~e~~Lw--   61 (497)
T d1ya0a1           3 LQSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYA--------LDKKVEQDLW--   61 (497)
T ss_dssp             HHHHHHHHHHHHH--------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHH--------HHHTHHHHHH--
T ss_pred             HHHHHHHHHHHHc--------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhH--------HHHhHHHHHH--
Confidence            3789999999999        688899999999999999999876   888887765432        2222222222  


Q ss_pred             hCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004811          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (729)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (729)
                      ...|..+++.+++....   .............++.++...+.|+.|+..+.+++.+        .+.....+.++|.++
T Consensus        62 ~~~y~~~ie~~r~~~k~---~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~  130 (497)
T d1ya0a1          62 NHAFKNQITTLQGQAKN---RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIIS  130 (497)
T ss_dssp             HHHTHHHHHHHHHHHSC---SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred             HHHHHHHHHHHHHhccc---ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHHH
Confidence            12245566666554321   1111111112223455556667777777777777666        677788899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 004811          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (729)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (729)
                      ...|++++|+..+.+++..         .+  ..++.++|.++...|++++|+.+|++|+.+.|+.       +..++++
T Consensus       131 ~~~~~~~~A~~~~~~al~~---------~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-------~~~~~~L  192 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSY---------IC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-------GQPYNQL  192 (497)
T ss_dssp             ------------CCHHHHH---------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-------SHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCC---------CH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------hHHHHHH
Confidence            9999999999999999877         22  4578899999999999999999999999998877       4789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004811          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (729)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  644 (729)
                      |.++...|++.+|+.+|.+++.+.       ++ ...++.+|+.++....+..++..            .....+.....
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~~-------~~-~~~a~~nL~~~~~~~~~~~~~~~------------~~~~~~~~~~~  252 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAVK-------FP-FPAASTNLQKALSKALESRDEVK------------TKWGVSDFIKA  252 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSSS-------BC-CHHHHHHHHHHHHHHTTSCCCCC------------SSCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCC-------CC-CHHHHHHHHHHHHHhhhhhhhhc------------cccccchHHHH
Confidence            999999999999999999998751       22 46788888887765432211100            00012333334


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004811          645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      +..+..++.....++....+.++.+..+...+
T Consensus       253 f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  284 (497)
T d1ya0a1         253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELL  284 (497)
T ss_dssp             HHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            45555555666666666666666665555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.9e-13  Score=121.66  Aligned_cols=137  Identities=14%  Similarity=0.063  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (729)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (729)
                      +++.|..+...|+|++|+..|.++       .+.    .+.+|+++|.+|..+|++++|+.+|++|+++        +|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i-------~~~----~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV-------QDP----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS-------SSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc-------CCC----CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            446799999999999999998753       122    2468899999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-------HcC-CCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004811          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE-------KLG-TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~g-~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (729)
                      ...+++++|.+|..+|++++|+..|++++...+.       .+| ........+++++|.++...|++++|. +.|+.++
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~-~~l~~A~  147 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLALAT  147 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH-HHHHHHH
Confidence            9999999999999999999999999999975321       111 112234678899999999999999999 9999999


Q ss_pred             hhccc
Q 004811          713 DANSR  717 (729)
Q Consensus       713 ~~~p~  717 (729)
                      .+.|+
T Consensus       148 ~~~~~  152 (192)
T d1hh8a_         148 SMKSE  152 (192)
T ss_dssp             TTCCS
T ss_pred             hcCCC
Confidence            98876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8e-12  Score=111.55  Aligned_cols=139  Identities=16%  Similarity=0.190  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-------AFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (729)
                      +..+...|..++..|+|++|+.+|++++.+.........       .....++.++|.+|..+|++++|+.++++++.+ 
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence            455678899999999999999999999998654333222       123457788999999999999999999999999 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (729)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (729)
                             +|....+++.+|.+|..+|++++|+..|++++++        +|++..+...++.+....+...+.....|.+
T Consensus        92 -------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~  156 (170)
T d1p5qa1          92 -------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKKLYAN  156 (170)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   8999999999999999999999999999999988        6778888888999888777766654334444


Q ss_pred             HH
Q 004811          711 LL  712 (729)
Q Consensus       711 al  712 (729)
                      .+
T Consensus       157 ~f  158 (170)
T d1p5qa1         157 MF  158 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.5e-12  Score=113.82  Aligned_cols=131  Identities=16%  Similarity=0.132  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (729)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (729)
                      +.+.|..+...|+|++|++.|.++..        .++    .+++++|.+|..+|++++|+.+|++|+++        +|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i~~--------~~~----~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp   67 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAVQD--------PHS----RICFNIGCMYTILKNMTEAEKAFTRSINR--------DK   67 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSS--------CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhcCC--------CCH----HHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence            44679999999999999999987532        222    35899999999999999999999999999        89


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004811          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP--------ASLEEAADRRLMGLICETKGDHEAALEHLVLA  418 (729)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a  418 (729)
                      ..+.+++++|.++..+|++++|+..|++++...+.+...        .......+++.+|.++...|++++|++.+.++
T Consensus        68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999875543211        01111233444444444444444444444444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.8e-12  Score=105.07  Aligned_cols=98  Identities=24%  Similarity=0.302  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 004811          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (729)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (729)
                      +...|..++..|++++|+.+|+++++.        +|....++..+|.+|..+|++++|+..|.+++.+        +|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence            556799999999999999999999999        8999999999999999999999999999999988        688


Q ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ...+++++|.++..+|++++|+ ..|+++++++|+
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~-~~~~~a~~~~p~  103 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEAN  103 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence            8999999999999999999999 999999999997

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.8e-11  Score=108.03  Aligned_cols=122  Identities=17%  Similarity=0.158  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (729)
                      ..+...|..|+..|+|++|+.+|++++++.        +....+|.++|.++..+|++++|+..|++++++        +
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------~   74 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   74 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccc--------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------c
Confidence            445677999999999999999999999972        235789999999999999999999999999999        8


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH--HhCCHhHHH
Q 004811          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK--EAGRVRSRK  704 (729)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~--~~g~~~~A~  704 (729)
                      |....++..+|.++..+|++++|+..|++++.+        +|....++..++.+..  ..+.+++|+
T Consensus        75 p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_          75 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987        5666667777766643  344566665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.8e-12  Score=103.13  Aligned_cols=110  Identities=18%  Similarity=0.159  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004811          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (729)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (729)
                      +...|..++..|++++|+.+|.+++.+        .+..+.+|..+|.+|..+|++++|+..|.+++.+        +|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence            456899999999999999999999986        2334679999999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 004811          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (729)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (729)
                      ...+++++|.++..+|++++|+..|++++++        .|....++..++.+.
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999976        577777777777664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.8e-11  Score=104.76  Aligned_cols=134  Identities=15%  Similarity=0.040  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (729)
Q Consensus       390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (729)
                      ..+..+...|..++..|+|++|+.+|.+++.+      .|....+|.++|.++..+|++++|+..|++++++        
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------   73 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence            34566788999999999999999999999875      5667889999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHH
Q 004811          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY--ESMNELEQAIKLLQKALKI  546 (729)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~  546 (729)
                      +|....++..+|.++..+|++++|+..|++++.+.         |....++..++.+.  ...+.+++|+........+
T Consensus        74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~  143 (159)
T d1a17a_          74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK---------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  143 (159)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHh
Confidence            89999999999999999999999999999999992         22234444555443  4445567776655444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.31  E-value=3.1e-11  Score=107.51  Aligned_cols=141  Identities=16%  Similarity=0.199  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (729)
                      +..+...|..++..|+|.+|+.+|.+++.+........       ......++.++|.||..+|++++|+.++++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            34566789999999999999999999998764332221       1224457888999999999999999999999999 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004811          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (729)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (729)
                             +|....+++.+|.+|..+|++++|+..|++++.+        +|++..+...++.+....+...+...+.|..
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   8999999999999999999999999999999986        6788888888898888777666544356665


Q ss_pred             HHhh
Q 004811          711 LLDA  714 (729)
Q Consensus       711 al~~  714 (729)
                      +++-
T Consensus       159 ~f~~  162 (168)
T d1kt1a1         159 MFKK  162 (168)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=8e-12  Score=115.48  Aligned_cols=101  Identities=14%  Similarity=0.071  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      +..+...|..++..|+|++|+.+|++|+.+        +|....+|.++|.+|...|++++|+.+|++++++        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            345778899999999999999999999999        8999999999999999999999999999999976        


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      +|....+++++|.+|..+|++++|+ ..|++++.++|+
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~-~~~~~al~l~p~  104 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE  104 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCcc
Confidence            7999999999999999999999999 999999999997

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.28  E-value=3e-11  Score=105.58  Aligned_cols=124  Identities=12%  Similarity=0.075  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF--------FGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (729)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (729)
                      ..+...|..++..|+|.+|+..|.+++.++..........        ...++.++|.+|..+|++++|+.++++++++ 
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-   96 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-   96 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc-
Confidence            3456679999999999999999999998765443332221        2357889999999999999999999999999 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 004811          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (729)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (729)
                             +|....+++.+|.+|..+|++++|+..|++++++        +|.+..+...+..+..+.+
T Consensus        97 -------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          97 -------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             -------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHH
T ss_pred             -------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999998        6777888888887766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.26  E-value=2.3e-10  Score=100.35  Aligned_cols=139  Identities=15%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             HHHHHHHH--HHHHHhcchHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          516 IASGLTDV--SSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       516 ~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                      ++.++..+  |..++..|+|++|+..|++++++.+..+....     ..+.+|.++|.+|..+|++++|+..+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            34555555  77888999999999999999999998754432     346778999999999999999999999999998


Q ss_pred             HHhCCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          589 RAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       589 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (729)
                      +.......   .....+++++|.+|..+|++++|+..|++++++..+..+. .+........++..+..+
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHHc
Confidence            87655433   3345678999999999999999999999999998776553 344444555555555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.2e-10  Score=115.40  Aligned_cols=225  Identities=13%  Similarity=0.034  Sum_probs=171.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHhcCCCCCChH
Q 004811          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT--------------GKLRESKSYCENALRIYEKPVPGVPPE  514 (729)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (729)
                      +.+...|++|+..        .|....+|...+..+...              +..++|...|++++...        .+
T Consensus        33 ~Rv~~vyerAl~~--------~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~--------~p   96 (308)
T d2onda1          33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK   96 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred             HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc--------CC
Confidence            4466678888887        466666777766655432              23466777777777542        22


Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004811          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (729)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (729)
                      .....+..++.++...|++++|...|++++...+..      ...++..++......|+++.|...|++++...    +.
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~------~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~----~~  166 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RT  166 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST----TC
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CC
Confidence            334578888999999999999999999998754322      23567788899999999999999999988642    11


Q ss_pred             CChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004811          595 KSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (729)
Q Consensus       595 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (729)
                          ....+...|.... ..|+.+.|..+|++++..        .|.....+...+..+...|++++|..+|++++... 
T Consensus       167 ----~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-  233 (308)
T d2onda1         167 ----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-  233 (308)
T ss_dssp             ----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-
T ss_pred             ----cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-
Confidence                2245556666543 468999999999999998        67888899999999999999999999999998753 


Q ss_pred             HHcCCCChh-HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          674 EKLGTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       674 ~~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                          +.+|. ....+..........|+.+.+. ..++++.+..|+
T Consensus       234 ----~~~~~~~~~iw~~~~~fE~~~G~~~~~~-~~~~r~~~~~~~  273 (308)
T d2onda1         234 ----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFRE  273 (308)
T ss_dssp             ----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTT
T ss_pred             ----CCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcc
Confidence                33443 3456777788888899999999 999999999987

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-10  Score=103.18  Aligned_cols=129  Identities=11%  Similarity=0.044  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ---------DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (729)
Q Consensus       391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (729)
                      .+..+...|..++..|+|++|+..|.+++........         ......++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            3566788999999999999999999999987654332         1234567788999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHH
Q 004811          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (729)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (729)
                              +|....+++.+|.+|..+|++++|+..|++++++         .|....+...++.+....+...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    8889999999999999999999999999999999         233355677777777666655544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.26  E-value=6.7e-10  Score=107.22  Aligned_cols=222  Identities=18%  Similarity=0.207  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 004811          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQ  340 (729)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  340 (729)
                      +.+++.||..++..+++++|+.+|+++.+..           ...+++.||.+|..    ..++..|..+++.+...   
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc---
Confidence            4568899999999999999999999997653           12358889999987    67899999999987765   


Q ss_pred             HhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----hCCHHHHH
Q 004811          341 VLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAAL  412 (729)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~  412 (729)
                             ....+...+|.++..    ..+.+.|...++++.....          ..+...++..+..    ......|+
T Consensus        68 -------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~----------~~a~~~l~~~~~~~~~~~~~~~~a~  130 (265)
T d1ouva_          68 -------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY----------AEGCASLGGIYHDGKVVTRDFKKAV  130 (265)
T ss_dssp             -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             -------cccchhhccccccccccccchhhHHHHHHHhhhhhhhh----------hhHHHhhcccccCCCcccchhHHHH
Confidence                   344667778877765    4578999999998876432          1345667766664    44577777


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--
Q 004811          413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR--  486 (729)
Q Consensus       413 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--  486 (729)
                      ..+.+...        ......+..+|.++..    ..+...+..+++.+.+.          ....+++.+|.+|..  
T Consensus       131 ~~~~~~~~--------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g~  192 (265)
T d1ouva_         131 EYFTKACD--------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGE  192 (265)
T ss_dssp             HHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTC
T ss_pred             HHhhhhhc--------ccccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccCc
Confidence            77766542        2234567888999886    45677777777777653          346788999999987  


Q ss_pred             --cCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHH
Q 004811          487 --TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKI  546 (729)
Q Consensus       487 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  546 (729)
                        ..++++|+.+|+++.+.      +     ...++++||.+|..    ..++.+|+.+|++|...
T Consensus       193 ~~~~d~~~A~~~~~~aa~~------g-----~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         193 GATKNFKEALARYSKACEL------E-----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHT------T-----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             ccccchhhhhhhHhhhhcc------c-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence              67899999999999776      2     25678899999986    44899999999999876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=4.9e-11  Score=110.00  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (729)
                      ..+...|..++..|+|++|+.+|++++.+        .|..+.+|.++|.+|...|++++|+.+|++++++         
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l---------   67 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---------   67 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh---------
Confidence            45678899999999999999999999999        7899999999999999999999999999999988         


Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      .|....+|.++|.+|..+|++++|+..|++++.+.+......
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence            555678899999999999999999999999999998764443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=3.2e-11  Score=98.97  Aligned_cols=94  Identities=19%  Similarity=0.129  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004811          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (729)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (729)
                      .++.+|.++...|++++|+..|++++..        +|+...++..+|.++...|++++|+.+|++++++        +|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   81 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   81 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------cc
Confidence            4567899999999999999999999999        8999999999999999999999999999999998        79


Q ss_pred             hHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 004811          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (729)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (729)
                      ....++..||.+|...|++++|+ +.|+++|
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~-~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAAL-ASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHH-HHHHHHh
Confidence            99999999999999999999999 9999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.23  E-value=1.8e-10  Score=101.03  Aligned_cols=134  Identities=14%  Similarity=0.093  Sum_probs=105.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC--C
Q 004811          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN----HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP--G  510 (729)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~  510 (729)
                      ..|..++..|+|++|+..|++++++........    .+..+.+|.++|.+|..+|++++|+..+++++.+..+...  .
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            347888899999999999999999876543211    2335678999999999999999999999999998765321  2


Q ss_pred             CChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 004811          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (729)
                      ...+....+++++|.+|..+|++++|+..|++++++.+...+.......+...++..+..
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHH
Confidence            234456778999999999999999999999999999998877665555555555544443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.23  E-value=2.1e-09  Score=103.56  Aligned_cols=224  Identities=13%  Similarity=0.160  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCC
Q 004811          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPV  508 (729)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~  508 (729)
                      .+++.||..+...+++.+|+.+|+++.+.          ....+++.||.+|..    ..++..|..+++.+....    
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----   68 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----   68 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----
Confidence            57889999999999999999999999764          235688999999987    678999999999887651    


Q ss_pred             CCCChHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHH
Q 004811          509 PGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYDS  580 (729)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  580 (729)
                             ...+...+|.++..    ..+.+.|..+++++....     .    ......++..+..    ......|...
T Consensus        69 -------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g-----~----~~a~~~l~~~~~~~~~~~~~~~~a~~~  132 (265)
T d1ouva_          69 -------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----Y----AEGCASLGGIYHDGKVVTRDFKKAVEY  132 (265)
T ss_dssp             -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----C----HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             -------ccchhhccccccccccccchhhHHHHHHHhhhhhhh-----h----hhHHHhhcccccCCCcccchhHHHHHH
Confidence                   23456677777764    467888999998887532     1    2345566766665    4456777777


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--
Q 004811          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--  654 (729)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--  654 (729)
                      +.+....          .....+..+|.++..    ..+...+..+++.+.+.          ....+++.||.+|..  
T Consensus       133 ~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g~  192 (265)
T d1ouva_         133 FTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGE  192 (265)
T ss_dssp             HHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTC
T ss_pred             hhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccCc
Confidence            7665542          124577888998886    45677888888887654          345688999999987  


Q ss_pred             --cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHhhccc
Q 004811          655 --IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       655 --~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~  717 (729)
                        ..++++|+.+|+++.+.          ..+.++++||.+|..    ..++++|. ++|+++.+....
T Consensus       193 ~~~~d~~~A~~~~~~aa~~----------g~~~a~~~LG~~y~~G~g~~~n~~~A~-~~~~kAa~~g~~  250 (265)
T d1ouva_         193 GATKNFKEALARYSKACEL----------ENGGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAK  250 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCH
T ss_pred             ccccchhhhhhhHhhhhcc----------cCHHHHHHHHHHHHcCCCCccCHHHHH-HHHHHHHHCcCH
Confidence              67899999999999863          335688999999985    34899999 999999887654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=9.8e-11  Score=104.40  Aligned_cols=128  Identities=13%  Similarity=0.168  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC--------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004811          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER--------KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (729)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (729)
                      +...|..++..|+|.+|+..|.+++.+.......        ..+....++.++|.++..+|++++|+..|.+++++   
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---  106 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---  106 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---
Confidence            4567889999999999999999999875432111        12345678899999999999999999999999999   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHH
Q 004811          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (729)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (729)
                           +|....+++.+|.+|..+|++++|+..|++++++        +|+...+...|+.++.......++.
T Consensus       107 -----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         107 -----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                 8999999999999999999999999999999998        5777788888888887766555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.22  E-value=1.5e-10  Score=102.83  Aligned_cols=144  Identities=13%  Similarity=0.163  Sum_probs=114.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCC------CHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKP------SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (729)
                      +.+..+...|..++..|+ |.+|+.+|.+|+.+++.......      .+....++.++|.||..+|+|++|+.++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~-~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGK-YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            346788899999999997 99999999999998754322111      13345678889999999999999999999999


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHH-HHH
Q 004811          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSE-AQK  371 (729)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~  371 (729)
                      .+.     +.+    ..+++.+|.++..+|++++|+..|++++.+        +|....+...++.+....+.+.+ ...
T Consensus        92 ~l~-----p~~----~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          92 GLD-----SAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             HHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc-----cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            886     333    345999999999999999999999999998        78888888888888877665543 445


Q ss_pred             HHHHHHHHH
Q 004811          372 FCQMALDIH  380 (729)
Q Consensus       372 ~~~~al~~~  380 (729)
                      .|.+.++..
T Consensus       155 ~~~~~f~~~  163 (168)
T d1kt1a1         155 TYANMFKKF  163 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            555555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-10  Score=98.56  Aligned_cols=108  Identities=12%  Similarity=0.235  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      +..+..+|..++..|+|++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++..... ..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence            456778999999999999999999999999        899999999999999999999999999999999865432 23


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ++....++..+|.++...+++++|+ .+|++++..+|+
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~  111 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHhcCCC
Confidence            4555778999999999999999999 999999988775

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.3e-10  Score=111.24  Aligned_cols=227  Identities=9%  Similarity=0.032  Sum_probs=168.8

Q ss_pred             HHHHHHHHHhcccchhhccccchHHHHHHHHHHHHHHH-------HcC-------CHHHHHHHHHHHHHHHHHHhCCCCc
Q 004811          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA-------MLG-------QLENSLMCYTTGLEVQKQVLGETDP  347 (729)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~g-------~~~~A~~~~~~al~~~~~~~~~~~~  347 (729)
                      ..+..+|++|+...     +.++.    +|+..+..+.       ..|       ..++|...|+++++.       ..|
T Consensus        33 ~Rv~~vyerAl~~~-----~~~~~----lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-------~~p   96 (308)
T d2onda1          33 KRVMFAYEQCLLVL-----GHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLK   96 (308)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTT
T ss_pred             HHHHHHHHHHHHHC-----CCCHH----HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-------cCC
Confidence            45666788887764     33332    2444444332       222       345666666666543       146


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Q 004811          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (729)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (729)
                      .....+..++.++...|+++.|...|++++...+...       ..++..++.+....|+++.|...|.+++..      
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~------  163 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARED------  163 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS------
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Confidence            6677889999999999999999999999997654332       245788889999999999999999998642      


Q ss_pred             ChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004811          428 DAEVASVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       428 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (729)
                      .+.....+...|... ...|+.+.|..+|++++..        .|.....+..++.++...|+++.|..+|++++.....
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            233335566666654 4468999999999999987        5777889999999999999999999999999987322


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Q 004811          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (729)
                           ++......|..........|+.+.+..+++++.+.++..
T Consensus       236 -----~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         236 -----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             -----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             -----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence                 233344567777777788899999999999999998765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-10  Score=98.66  Aligned_cols=105  Identities=13%  Similarity=0.216  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCC
Q 004811          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      +..+..+|..++..|+|++|+.+|.+++++         .|....++.++|.+|..+|++++|+..+++++.+.+.....
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH
Confidence            456678999999999999999999999999         34457789999999999999999999999999999998777


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (729)
                      ...++.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7788889999999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=2e-10  Score=102.34  Aligned_cols=132  Identities=12%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC-------CCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANG-------KPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (729)
                      .+..+...|..++..|+ |.+|+..|.+|+.+.+.....       .-+|..+.++.++|.+|..+|+|++|+..|++++
T Consensus        26 ~a~~~~~~~~~~~~~~~-y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            34456788999999997 999999999999876543211       1236678889999999999999999999999999


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004811          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (729)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (729)
                      ++.     +.++    .+|+.+|.+|..+|++++|+..|++++++        +|....+...++.+........++
T Consensus       105 ~~~-----p~~~----~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         105 EID-----PSNT----KALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh-----hhhh----hHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            986     4443    45999999999999999999999999999        788888888888877666555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=2.5e-10  Score=99.51  Aligned_cols=124  Identities=15%  Similarity=0.024  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCh----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004811          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----------EVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (729)
Q Consensus       391 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (729)
                      .+..+...|..++..|+|.+|+..|.+++..........          ....++.++|.+|..+|++++|+.++++++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            355677899999999999999999999997665443321          2245778999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcc
Q 004811          461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (729)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (729)
                      +        +|....+|+.+|.+|..+|++++|+.+|++++++         .|....+...+..+...++
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l---------~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHH
Confidence            9        8999999999999999999999999999999999         3334555666666655443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.16  E-value=1.5e-10  Score=94.94  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      ..+.+|.++...|++++|+..|++++..        .|....+|..+|.++...|++++|+.+|++++++         .
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------~   80 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D   80 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc---------c
Confidence            3467899999999999999999999998        7889999999999999999999999999999999         5


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                      |....++..+|.+|..+|++++|++.+++.+
T Consensus        81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5567899999999999999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-10  Score=95.34  Aligned_cols=99  Identities=11%  Similarity=-0.007  Sum_probs=84.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCCC
Q 004811          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEKLGTAN  680 (729)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~  680 (729)
                      ..++..+...+++++|.+.|++++.+        +|....+++++|.++...+   ++++|+.+|++++..      ...
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~   68 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCC
Confidence            34667778889999999999999999        8999999999999998755   455688888888753      223


Q ss_pred             hhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      |....++++||.+|...|++++|+ .+|+++++++|+
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~-~~~~~aL~~~P~  104 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKAL-KYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHhCcC
Confidence            455679999999999999999999 999999999997

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.7e-10  Score=91.95  Aligned_cols=114  Identities=8%  Similarity=-0.058  Sum_probs=93.0

Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCCh
Q 004811          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSA  597 (729)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  597 (729)
                      ..++..+...+++++|.+.|++++.+.|..       ..+++++|.++...+   ++++|+.+|++++..      ...+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            356778889999999999999999997766       578999999998755   455688888887753      1112


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004811          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (729)
                      ....+++++|.+|..+|++++|+.+|++++++        +|+...+...++.+..+.
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHH
Confidence            33568999999999999999999999999999        899888888777766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.94  E-value=8.1e-10  Score=95.01  Aligned_cols=122  Identities=20%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             HHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 004811          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (729)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (729)
                      +.+++.|++|+..|++++++.|..       +.++.++|.++...+++..+.+                           
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~-------~~~~~~~g~~l~~~~~~~~~~e---------------------------   52 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISD---------------------------   52 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHH---------------------------
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcc-------hHHHHHHHHHHHHhhhhhhhhH---------------------------
Confidence            445566777777777777776655       4666667766666555443332                           


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHH
Q 004811          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-----------LDDAIEILEFVVGIREEK  675 (729)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~  675 (729)
                           ..+.+++|+..|++++++        +|+...+++++|.+|..+|+           +++|+.+|++++++    
T Consensus        53 -----~~~~~~~Ai~~~~kAl~l--------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l----  115 (145)
T d1zu2a1          53 -----AKQMIQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE----  115 (145)
T ss_dssp             -----HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             -----HHHHHHHHHHHHHHHHHh--------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc----
Confidence                 123457899999999999        89999999999999987764           68888888888877    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCCHhHH
Q 004811          676 LGTANPDVDDEKRRLAELLKEAGRVRSR  703 (729)
Q Consensus       676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A  703 (729)
                          +|+....+..|+.+....+.+.++
T Consensus       116 ----~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         116 ----QPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             ----CTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHH
Confidence                688888888888876555444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5e-09  Score=82.44  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004811          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (729)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (729)
                      +.-++.+|.++...|+|.+|+.+|++|+++....... .+....++.+||.+|..+|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            3456789999999999999999999999987654333 4567789999999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHh
Q 004811          680 NPDVDDEKRRLAELLKEA  697 (729)
Q Consensus       680 ~p~~~~~~~~La~~~~~~  697 (729)
                      +|+...++.+++.+...+
T Consensus        76 ~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHh
Confidence            688888999998776544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.7e-09  Score=81.71  Aligned_cols=89  Identities=16%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004811          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (729)
                      +.-++.+|.++...|+|.+|+.+|++|+++.+...... ...+.++.++|.++.+.|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~-~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST-IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC-ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            34567999999999999999999999999887654433 346789999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHc
Q 004811          638 HPDTLGVYSNLAGTYDAI  655 (729)
Q Consensus       638 ~~~~~~~~~~la~~~~~~  655 (729)
                      +|+...++.+++.+...+
T Consensus        76 ~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHh
Confidence            899999999988766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=6.3e-09  Score=89.28  Aligned_cols=93  Identities=15%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHhcCCCC
Q 004811          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----------GKLRESKSYCENALRIYEKPVPG  510 (729)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  510 (729)
                      .|.+++.|++|+..|++++++        +|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            356678899999999999999        899999999999999854          4568899999999999       


Q ss_pred             CChHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHhC
Q 004811          511 VPPEEIASGLTDVSSIYESMNE-----------LEQAIKLLQKALKIYNDA  550 (729)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~  550 (729)
                        .|....+++++|.+|..+|+           +++|+.+|++++++.|..
T Consensus        71 --~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          71 --DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             --cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence              55667889999999988764           688999999999887765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=3.8e-07  Score=80.75  Aligned_cols=132  Identities=15%  Similarity=0.038  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004811          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (729)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (729)
                      +......+...|......|++++|+..|.+|+.+++..+-...              ..+.+  +.   .....+.    
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------------~~~~w--~~---~~r~~l~----   63 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------------RDFQF--VE---PFATALV----   63 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------------TTSTT--HH---HHHHHHH----
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------------cchHH--HH---HHHHHHH----
Confidence            3445678888999999999999999999999988754321110              00111  00   1111111    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004811          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (729)
                          .....++..++.++...|++++|+.++++++.+        +|....+|..++.+|...|++.+|+..|+++....
T Consensus        64 ----~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          64 ----EDKVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence                124567888999999999999999999999999        99999999999999999999999999999999998


Q ss_pred             HHHcCCC
Q 004811          673 EEKLGTA  679 (729)
Q Consensus       673 ~~~~g~~  679 (729)
                      .+-+|..
T Consensus       132 ~~eLG~~  138 (179)
T d2ff4a2         132 ADDLGID  138 (179)
T ss_dssp             HHHHSCC
T ss_pred             HHHhCCC
Confidence            8877754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=1.3e-06  Score=77.27  Aligned_cols=114  Identities=11%  Similarity=-0.018  Sum_probs=96.1

Q ss_pred             HhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccc-------------hHHHHHHHHHHHHHHHHcCCHHHHH
Q 004811          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-------------ALAKFAGHMQLGDTYAMLGQLENSL  328 (729)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~  328 (729)
                      ......+...|......|++++|+..|.+|+.+.+.....+.             ....+.++..++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            445677888999999999999999999999998642211111             1223467889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004811          329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (729)
Q Consensus       329 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (729)
                      .++++++.+        +|....+|..++.++...|++.+|+..|+++.......
T Consensus        88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999        89999999999999999999999999999998876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.44  E-value=1.8e-07  Score=88.60  Aligned_cols=128  Identities=10%  Similarity=-0.070  Sum_probs=106.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004811          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (729)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (729)
                      .-.+..|++++|+..|+++++.        .+....++..++.+++..|++++|+..|++++++        +|+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~   67 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA   67 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence            3456789999999999999986        2335789999999999999999999999999999        99999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHhhccc
Q 004811          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (729)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (729)
                      ..++.++...+..+++...+.+..       -..+|.....+...+.++...|++++|. ..++++.+..|.
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~-~~~~~a~e~~p~  131 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCCC
Confidence            999998877666655544333222       1345777788888999999999999999 999999999987

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.22  E-value=1.9e-06  Score=81.26  Aligned_cols=126  Identities=11%  Similarity=0.067  Sum_probs=99.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004811          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (729)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (729)
                      .-.+..|++++|+..|+++++.        +|....++..++.+|+..|++++|+..|++++++         .|....+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---------~P~~~~~   66 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---------FPEYLPG   66 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CGGGHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCcHHH
Confidence            3456789999999999999998        8999999999999999999999999999999999         5556777


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004811          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (729)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (729)
                      +..++.++...+..+++...+.+.     ...+ .+.....+...+.++...|++++|...+.++.+..
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~-----~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATA-----KVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCE-----ECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhh-----hccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            888888877766665543322211     1112 22334556678899999999999999999998864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.76  E-value=6.4e-05  Score=62.40  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHHcCChHHHHHHHHHhcccchhhccccchHHHHHHHHHHHH
Q 004811          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (729)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  316 (729)
                      |+++|+.+|++|.+.      +.     ..++..|+.  ....++++|+.+|+++.+..       +    ..+++.||.
T Consensus         8 d~~~A~~~~~kaa~~------g~-----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-------~----~~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL------NE-----MFGCLSLVS--NSQINKQKLFQYLSKACELN-------S----GNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT------TC-----TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-------C----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC------CC-----hhhhhhhcc--ccccCHHHHHHHHhhhhccc-------c----hhhhhhHHH
Confidence            389999999998764      11     233455553  34578999999999987653       2    235788999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHH
Q 004811          317 TYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIH  380 (729)
Q Consensus       317 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  380 (729)
                      +|..    ..++.+|+.+|+++.+.          ....+.+.||.+|..    ..++.+|+.+|+++.+..
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            9886    56789999999999766          345788999999887    468999999999987753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.73  E-value=0.00011  Score=61.01  Aligned_cols=111  Identities=10%  Similarity=0.051  Sum_probs=85.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004811          572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (729)
Q Consensus       572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (729)
                      .|+++|+.+|+++.+.    +.      ..+...++.  ....++++|+.+|+++.+.          ....+++.||.+
T Consensus         7 kd~~~A~~~~~kaa~~----g~------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL----NE------MFGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT----TC------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC----CC------hhhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHh
Confidence            3788999999998764    11      134445553  3456899999999998764          344578999999


Q ss_pred             HHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHhhc
Q 004811          652 YDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDAN  715 (729)
Q Consensus       652 ~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~  715 (729)
                      |..    ..++++|+.+|+++.+.          ..+.+.+.||.+|..    ..+.++|. .+|+++.+..
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~-~~~~~Aa~~G  125 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAV-KTFEKACRLG  125 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHHTT
T ss_pred             hhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHH-HHHHHHHHCC
Confidence            986    45789999999999863          345688999999987    46899999 9999998764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=0.0005  Score=54.47  Aligned_cols=78  Identities=5%  Similarity=-0.061  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004811          600 GVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (729)
Q Consensus       600 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (729)
                      ..+.++.|+++.+..   +.++|+.++++++..        +|.. .++++.||..|.++|++++|+.++++++++    
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----
Confidence            467788888888654   467899999888876        6654 579999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHH
Q 004811          676 LGTANPDVDDEKRRLAEL  693 (729)
Q Consensus       676 ~g~~~p~~~~~~~~La~~  693 (729)
                          .|++..+....-.+
T Consensus       103 ----eP~n~qA~~L~~~I  116 (124)
T d2pqrb1         103 ----ERNNKQVGALKSMV  116 (124)
T ss_dssp             ----CTTCHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHH
Confidence                57776665444333

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.003  Score=49.87  Aligned_cols=79  Identities=5%  Similarity=-0.111  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004811          558 AGIEAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (729)
Q Consensus       558 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (729)
                      ..+.++.|+++.+..+   .++|+.++++++..       .+.....+++.||..|.++|+|++|..++++++++     
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i-----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----
Confidence            4677888988887654   45777777776653       23334579999999999999999999999999999     


Q ss_pred             CCCChhHHHHHHHHHHH
Q 004811          635 GPYHPDTLGVYSNLAGT  651 (729)
Q Consensus       635 ~~~~~~~~~~~~~la~~  651 (729)
                         .|++..+....-.+
T Consensus       103 ---eP~n~qA~~L~~~I  116 (124)
T d2pqrb1         103 ---ERNNKQVGALKSMV  116 (124)
T ss_dssp             ---CTTCHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHH
Confidence               88877765544433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=1.3  Score=43.73  Aligned_cols=197  Identities=11%  Similarity=-0.077  Sum_probs=110.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 004811          483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (729)
Q Consensus       483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (729)
                      ......+.+.|...+........     ............++..+...+..+.|...+......     ....  .....
T Consensus       223 ~rla~~d~~~a~~~l~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~~~w  290 (450)
T d1qsaa1         223 ASVARQDAENARLMIPSLAQAQQ-----LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-----SQST--SLIER  290 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-----CCCH--HHHHH
T ss_pred             HHHhccChhHHHHHHHhhhhccc-----ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-----ccch--HHHHH
Confidence            33344567777777766554421     123333344444444444455566666655543321     1111  11122


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHhc
Q 004811          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI--------LEQEC  634 (729)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~  634 (729)
                      .++ .....+++..+...+...-        ..+.......+.+|..+...|+.++|..+|..+...        ...+.
T Consensus       291 ~~~-~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg  361 (450)
T d1qsaa1         291 RVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIG  361 (450)
T ss_dssp             HHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTT
T ss_pred             HHH-HHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcC
Confidence            223 3445678777766665321        122233566677888888888888888888876541        11111


Q ss_pred             CC------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811          635 GP------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (729)
Q Consensus       635 ~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (729)
                      .+            ...-....-...+..+...|+...|...+..++..       .+   ..-...++.+..+.|.++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-------~~---~~~~~~la~lA~~~g~~~~  431 (450)
T d1qsaa1         362 EEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-------KS---KTEQAQLARYAFNNQWWDL  431 (450)
T ss_dssp             CCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CC---HHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-------CC---HHHHHHHHHHHHHCCChhH
Confidence            10            00001112335577788999999999988876531       12   3355677999999999999


Q ss_pred             HHHHHHHHH
Q 004811          703 RKAQSLETL  711 (729)
Q Consensus       703 A~~~~l~~a  711 (729)
                      |+ ....++
T Consensus       432 aI-~a~~~~  439 (450)
T d1qsaa1         432 SV-QATIAG  439 (450)
T ss_dssp             HH-HHHHHT
T ss_pred             HH-HHHHHH
Confidence            99 665544

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.53  E-value=0.66  Score=40.25  Aligned_cols=188  Identities=10%  Similarity=0.047  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCC
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      ....+|.+..+.|+|++...+.++++++.....+.-+.    .-.+.+..+|-. .|....+...+....   ....+..
T Consensus         6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~----eERnLLsvayKn~i~~~R~s~R~i~~ie---~k~~~~~   78 (220)
T d2o8pa1           6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD----EERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNND   78 (220)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSCH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCH----HHHHHHHHHHHHHHhhhHHHHHHHHHHH---Hhhccch
Confidence            44567999999999999999999999885310000111    112233333322 244444544443321   1211111


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHH
Q 004811          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-----QRYSINEAVELFEEARSI  629 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~  629 (729)
                       ..    ..+..-|.. .=..+-...+...+.+........+......+-..|..|.     ..|..++|...|++|..+
T Consensus        79 -~~----~~~~~~y~~-~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i  152 (220)
T d2o8pa1          79 -EL----VKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL  152 (220)
T ss_dssp             -HH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             -hH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence             10    111111111 1112334445555665555444333222333334455543     467889999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHc
Q 004811          630 LEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREEKL  676 (729)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~  676 (729)
                      ......|.||-......+.+.+|. -+++.++|.++.+.|.+.+...+
T Consensus       153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai  200 (220)
T d2o8pa1         153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQI  200 (220)
T ss_dssp             HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            988788889988888888887765 58999999999999966555444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.78  E-value=0.28  Score=46.32  Aligned_cols=110  Identities=18%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (729)
Q Consensus       395 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (729)
                      ...+|..+...|.|+.|..+|...              .-+..+..++...+++..|.+++.++-             ..
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~--------------~d~~rl~~~~v~l~~~~~avd~~~k~~-------------~~   69 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN-------------ST   69 (336)
T ss_dssp             ------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------------CH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhC--------------CCHHHHHHHHHhhccHHHHHHHHHHcC-------------CH
Confidence            345677777788888887777532              112334456677778877776654331             12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (729)
                      .+|..+...+....+..-|..     ....     ...++.   -+..+...|...|.+++.+.+++.++
T Consensus        70 ~~~k~~~~~l~~~~e~~la~i-----~~~~-----~~~~~d---~l~~~v~~ye~~~~~e~Li~~Le~~~  126 (336)
T d1b89a_          70 RTWKEVCFACVDGKEFRLAQM-----CGLH-----IVVHAD---ELEELINYYQDRGYFEELITMLEAAL  126 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH-----TTTT-----TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcHHHHHHH-----HHHH-----hhcCHH---HHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            345555555555544432211     0000     001111   22334555666677777776666654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=2.4  Score=41.70  Aligned_cols=129  Identities=12%  Similarity=0.030  Sum_probs=76.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004811          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (729)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  642 (729)
                      ..+.......+.+.|...+......    ..............++..+...+..+.|..++......        ..+..
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--------~~~~~  286 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------SQSTS  286 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------CCCHH
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhc----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--------ccchH
Confidence            3444444556778887777665432    11222222333334444444556677777777665443        22222


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHh
Q 004811          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (729)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (729)
                       ....++......+++..+...+....        ..........+.+|..+...|+.++|. ..|..+..
T Consensus       287 -~~~w~~~~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~-~~~~~~a~  347 (450)
T d1qsaa1         287 -LIERRVRMALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAK-EILHQLMQ  347 (450)
T ss_dssp             -HHHHHHHHHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred             -HHHHHHHHHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHH-HHHHHHhc
Confidence             22223333456688888877765432        233345778899999999999999999 88888764

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.58  E-value=1.9  Score=40.40  Aligned_cols=262  Identities=12%  Similarity=0.107  Sum_probs=135.9

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004811          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (729)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (729)
                      -..|..+...|.|+.|..+|...-.                +..+..++...+++..|.+.+.++        ..   ..
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d----------------~~rl~~~~v~l~~~~~avd~~~k~--------~~---~~   70 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN----------------FGRLASTLVHLGEYQAAVDGARKA--------NS---TR   70 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC----------------HHHHHHHHHTTTCHHHHHHHHHHH--------TC---HH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC----------------HHHHHHHHHhhccHHHHHHHHHHc--------CC---HH
Confidence            3456777788888888887763211                455667788899999998888755        12   23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCh
Q 004811          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (729)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (729)
                      +|..+...+.......-|...     ..       .....+.-...+...|...|.+++.+.+++.++..-      ..+
T Consensus        71 ~~k~~~~~l~~~~e~~la~i~-----~~-------~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~------~~~  132 (336)
T d1b89a_          71 TWKEVCFACVDGKEFRLAQMC-----GL-------HIVVHADELEELINYYQDRGYFEELITMLEAALGLE------RAH  132 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHT-----TT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST------TCC
T ss_pred             HHHHHHHHHHhCcHHHHHHHH-----HH-------HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC------ccc
Confidence            556666666666665443111     00       011112233456677888999999999999876541      112


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHH---------HHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004811          514 EEIASGLTDVSSIYESMNELEQAIKLLQ---------KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (729)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~---------~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (729)
                         ...+..++.+|.+.+. ++-++++.         +++..+...        ..|..+..+|.+.|+++.|+..+-.-
T Consensus       133 ---~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~i~~  200 (336)
T d1b89a_         133 ---MGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITMMNH  200 (336)
T ss_dssp             ---HHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ---hHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHc--------CChHHHHHHHHhcCCHHHHHHHHHHc
Confidence               3356677777776543 33333332         233333322        12345677788888888887655331


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH----------HHHHHHHHH
Q 004811          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY----------SNLAGTYDA  654 (729)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----------~~la~~~~~  654 (729)
                      ..      +      ++-....-.++.+..+.+...+...-.++.        +|....-+          ..+.....+
T Consensus       201 ~~------~------~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--------~p~~i~~lL~~v~~~~d~~r~V~~~~k  260 (336)
T d1b89a_         201 PT------D------AWKEGQFKDIITKVANVELYYRAIQFYLEF--------KPLLLNDLLMVLSPRLDHTRAVNYFSK  260 (336)
T ss_dssp             TT------T------TCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--------CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             ch------h------hhhHHHHHHHHHccCChHHHHHHHHHHHHc--------CHHHHHHHHHHhccCCCHHHHHHHHHh
Confidence            00      0      000111122333444433322222222222        33322111          223344556


Q ss_pred             cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCHhH
Q 004811          655 IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (729)
Q Consensus       655 ~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (729)
                      .++..-...+++....       .   +.......|+.+|...++++.
T Consensus       261 ~~~l~li~p~Le~v~~-------~---n~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         261 VKQLPLVKPYLRSVQN-------H---NNKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             TTCTTTTHHHHHHHHT-------T---CCHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCcHHHHHHHHHHHH-------c---ChHHHHHHHHHHHhCcchhHH
Confidence            6666666666665432       1   223578889999999999654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.78  E-value=2.9  Score=36.62  Aligned_cols=185  Identities=14%  Similarity=0.102  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCC
Q 004811          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ  553 (729)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  553 (729)
                      .-+..+|.+..+.++|++.+.+.+++++.....  .-..    .-.+.+..+|-. .|....+...+....+..... +.
T Consensus         5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~--~Ls~----eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~-~~   77 (236)
T d1o9da_           5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSE--ELTV----EERNLLSVAYKNVIGARRASWRIISSIEQKEESR-GN   77 (236)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSS--CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC--CCCH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcc-CC
Confidence            346778899999999999999999998763110  0011    112233333322 344455555554433332222 21


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C-CCCChHHHHHHHHHHHHHHHc-----C-----CHHHHH
Q 004811          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI--G-ERKSAFFGVALNQMGLACVQR-----Y-----SINEAV  620 (729)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~  620 (729)
                      ....     .+..-|.. .=-++=..++...+.+....  . ...+......+...|..|.-.     |     -.+.|.
T Consensus        78 ~~~~-----~~i~~yk~-kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~  151 (236)
T d1o9da_          78 EEHV-----NSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  151 (236)
T ss_dssp             HHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             hHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence            1111     11111110 01122233444444444322  0 111122223334445554421     2     256789


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004811          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR  672 (729)
Q Consensus       621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  672 (729)
                      ..|++|..+......+.||-......+.+..|.. .|+.++|+.+.++++.-.
T Consensus       152 ~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         152 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999888888899988888888887765 699999999999888654

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.57  E-value=3  Score=36.34  Aligned_cols=179  Identities=13%  Similarity=0.020  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004811          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASL  389 (729)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (729)
                      +..+|.+....++|++.+.+.+++++..     .  .....-...+..+|- ..|....+...+..........  ....
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~-----~--eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~--~~~~   76 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQG-----A--ELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGA--EKKQ   76 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-----S--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcC-----C--CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCc--chhh
Confidence            5678999999999999999999987762     1  111222223333332 2234444444444332211111  1111


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HhCCCChhHHHHHHHHHHHHHHcC----------CHHHHHHH
Q 004811          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTM-----IANDQDAEVASVDCSIGDTYLSLS----------RYDEAGFA  454 (729)
Q Consensus       390 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~  454 (729)
                      ...       .-|. ..=-.+-...+...+.++     .........+..+...|..|...-          -.+.|...
T Consensus        77 ~~i-------~~yk-~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~a  148 (230)
T d2o02a1          77 QMA-------REYR-EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQA  148 (230)
T ss_dssp             HHH-------HHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHH-------HHHH-HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            100       0000 000111122223333222     222333333444444565554321          23579999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhc
Q 004811          455 YQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEK  506 (729)
Q Consensus       455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  506 (729)
                      |++|++++.....+.+|.......+.+..|+. .|+.++|..+.++++...-.
T Consensus       149 Y~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         149 YQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999887778888877777777777655 89999999999888876543

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.62  E-value=4.9  Score=34.92  Aligned_cols=182  Identities=13%  Similarity=0.115  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCCC
Q 004811          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ  554 (729)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  554 (729)
                      -+..+|.+..+.++|++.+.+.+++++.....     .   ..-.+.+..+|-. .|....+...+....+   ...+..
T Consensus         5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eL-----t---~eERnLlsvayKn~i~~rR~s~R~l~~ie~---k~~~~~   73 (230)
T d2o02a1           5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAEL-----S---NEERNLLSVAYKNVVGARRSSWRVVSSIEQ---KTEGAE   73 (230)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-----
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCC-----C---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHcCcc
Confidence            35678999999999999999999988773221     1   1112233333322 3444555555443222   111111


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCChHHHHHHHHHHHHHHHc----------CCHHHHHH
Q 004811          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI---GERKSAFFGVALNQMGLACVQR----------YSINEAVE  621 (729)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~  621 (729)
                      .....     ..-|.. .=-.+=..++...+.+....   ....+......+...|..|.-.          .-.+.|..
T Consensus        74 ~~~~~-----i~~yk~-kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~  147 (230)
T d2o02a1          74 KKQQM-----AREYRE-KIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQ  147 (230)
T ss_dssp             -CHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             hhhHH-----HHHHHH-HHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHH
Confidence            11111     111110 01122233444555544322   1111222233344445555422          12457999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHH
Q 004811          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREE  674 (729)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~  674 (729)
                      .|++|+++......+.||-......+.+..|. -.|+.++|+++.++++.-.-.
T Consensus       148 aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         148 AYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999988888889998888787777665 589999999999999876543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.67  E-value=1.1  Score=31.11  Aligned_cols=48  Identities=15%  Similarity=0.155  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHH
Q 004811          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC  267 (729)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  267 (729)
                      +.+-.+-..|..+...|. |++||+++++|...+.......+++.....
T Consensus         6 N~AH~~~RrAer~l~~~r-ydeAIech~kA~~yl~eA~klt~s~~~l~S   53 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTESEQAHLS   53 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            345667789999999998 999999999999998887766555444333

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.82  E-value=1.2  Score=32.57  Aligned_cols=55  Identities=20%  Similarity=0.069  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 004811          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (729)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~  275 (729)
                      .+..++..|..+-..|+ |++|+.+|.+|+.++-......+++..-..+.....-|
T Consensus        14 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eY   68 (93)
T d1wfda_          14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            45677899999999996 99999999999999988766666666555554444444

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=86.38  E-value=9.6  Score=33.07  Aligned_cols=185  Identities=14%  Similarity=0.097  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhC
Q 004811          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIAN  425 (729)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~  425 (729)
                      ..+-+..+|.+..+.++|++.+.+.+++++..  +...    .   .-.+.+..+|-. .|....+...+..........
T Consensus         3 ~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls----~---eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~   75 (236)
T d1o9da_           3 AREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESR   75 (236)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCC----H---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcc
Confidence            34557788889999999999999999998762  2211    1   113334443322 233344444443222211111


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHc-----C-----CHHH
Q 004811          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHPA-VASVFVRLADMYNRT-----G-----KLRE  492 (729)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~-~~~~~~~la~~~~~~-----g-----~~~~  492 (729)
                      +. ......    ..-| ...=-++=..++..++.+.....-+  .++. ....+-..|..|...     |     -.+.
T Consensus        76 ~~-~~~~~~----i~~y-k~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~  149 (236)
T d1o9da_          76 GN-EEHVNS----IREY-RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES  149 (236)
T ss_dssp             TC-HHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CC-hHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHH
Confidence            11 111111    1111 0111122233445555544332210  1222 223333445555432     2     2457


Q ss_pred             HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHH
Q 004811          493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNELEQAIKLLQKALKIY  547 (729)
Q Consensus       493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~  547 (729)
                      |...|+.|+.+....++.. +|.......+.+..| ...|+.++|..+.++++...
T Consensus       150 a~~aY~~A~~~a~~~l~pt-~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         150 TLTAYKAAQDIATTELAPT-HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCC-cHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            8899999999887644333 444444555555554 45699999998888776644

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.87  E-value=4.8  Score=27.85  Aligned_cols=41  Identities=12%  Similarity=0.167  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 004811          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (729)
Q Consensus       304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (729)
                      |...+-.+-..|.-+...|+|++|++++++|.......+.-
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl   44 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL   44 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            34445557788999999999999999999999887665543