Citrus Sinensis ID: 004848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------
Protein Sequence
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEVRQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccHHHHcccHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHcc
Coil and Loop (DISEMBL)
mpgiimddiheegvvselngnstpvkensvsnkspkstpcpqsprdqpdgegvdTSIEQLYENVcdmqssdqspsrhsfgsdgeesriDSELRHlvggemreveimeeeevekpeddshsissskkgsssgskksgkleksqsagtksissghskkvshsgmdsevssktnskgkslpekppidkgvkksnagatpmkkrkgklhkgqdvseagldkpglgpLLLKQARELISSGDNPQKALELALRAAKSfeigangkpsLELVMCLHVIAAIYCSlgqyneaipvleqsieipvieeGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQkqvlgetdprvGETCRYLAEAHVQALQFSEAQKFCQMALDIhkdngspaslEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAndqdaevasvdcsigdtylslsrydEAGFAYQKALTAFktnkgenhpaVASVFVRLADMYNrtgklreskSYCENALRiyekpvpgvppeeiasgltdVSSIYESMNELEQAIKLLQKALKIyndapgqqstvAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEqecgpyhpdtlgvysnLAGTYDAIGRLDDAIEILEFVVGIREeklgtanpdvdDEKRRLAELLKEAGRVRSRKAQSLETLLDAnsrvnndgievrq
Flexible Loop (DISEMBL)
mpgiimddihEEGVVSelngnstpvkensvsnkspkstpcpqsprdqpdGEGVDTSIEQLYENVCDMQSSDQSPSRhsfgsdgeesridsELRHLVGGEMREVEIMEeeevekpeddshsissskkgsssgskksgkleksqsagtksissghskkvshsgmdsevssktnskgkslpekppidkgvkksnagatpmkkrkgklhkgqdvseagldkpgLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAfktnkgenhpAVASVFVRLADMYNRtgklresksyCENALRIyekpvpgvppeEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIReeklgtanpdvddeKRRLAELLKeagrvrsrkaqsletlldansrvnndgievrq
Low Complexity Region (SEG)
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGemreveimeeeevekpeDDshsissskkgsssgskksgkleksqsAGTksissghskkvshsgMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAgldkpglgplllkQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEVRQ
Disordered region (IsUnstruct)
***************************************************************************************************************************************************************************************************************************************************LALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH**************RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV****IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE*****************************************************
Disordered Region (DISOPRED)
*PGI****I***********************************************IEQLYE***************************SELRHLVGGEMRE***************************SGSKKSGKL***************************************PEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD**************
Disordered Region (DISEMBL)
MPGIIMDDIHEEGVVSELNGN******************************GVDTSIEQLYENVC***********************DSELRHLVGGEMREVEIM*************************************************************************KPPIDKG*************************EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEVRQ
Disordered Region (DISPRO)
********IHE***********************************QPDGEGVDTSIEQLYENVCDMQ******************RIDSELRHLVGGEMREVEIMEEEEVEK****************************************************************************************************GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND*I****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDxxxxxxxxxxxxxxxxxxxxxxxxxxxxPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDxxxxxxxxxxxxxxxxxxxxxKAQSLETLLDANSRVNNDGIEVRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	727	2.2.26 [Sep-21-2011]
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.335	0.183	0.240	8e-14
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.338	0.187	0.232	1e-12
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.335	0.184	0.229	7e-12
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.359	0.200	0.226	3e-11
Q5PQM2	619	Kinesin light chain 4 OS=	no	no	0.215	0.253	0.276	1e-10
Q9DBS5	619	Kinesin light chain 4 OS=	no	no	0.214	0.252	0.278	3e-10
P46822	540	Kinesin light chain OS=Ca	no	no	0.323	0.435	0.254	4e-10
Q9NSK0	619	Kinesin light chain 4 OS=	no	no	0.215	0.253	0.270	5e-10
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.356	0.198	0.229	7e-10
Q2HJJ0	616	Kinesin light chain 4 OS=	no	no	0.214	0.253	0.265	8e-10

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 35/279 (12%)

Query: 438  IGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
            + D Y +L R+        +A    Q++L   +T    +HP VA    +LA +Y +  K 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 491  RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
              ++   + AL I E    G      A  L  ++++Y+  N+ EQA    +K+ KI+  A
Sbjct: 1002 GNAEQLYKQALEISENAY-GADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKA 1060

Query: 551  PGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFKNAI 585
              ++  + G                            ++GV+YY+  N   +    K ++
Sbjct: 1061 IKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNELGVLYYLQNNLETADQFLKRSL 1120

Query: 586  S-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
              + R +G         +LN +   C ++   ++A EL+E A  I  +   P HP     
Sbjct: 1121 EMRERVLGPDHPDC-AQSLNNLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYT 1179

Query: 645  YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683
              +LA  Y  +G+LD A+ + E  V IR++  G  +P V
Sbjct: 1180 VKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSV 1218

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Homo sapiens (taxid: 9606)

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 119/279 (42%), Gaps = 33/279 (11%)

Query: 437  SIGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
            S+ D Y +L R+        +A    Q++L   +T    +HP+VA    +LA +Y ++ K
Sbjct: 925  SLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQSKK 984

Query: 490  LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
               ++   + AL I E    G     +A  L  ++ +Y+  N+ EQA +L +K+LKI   
Sbjct: 985  FGNAEQLYKQALEISENAY-GSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQK 1043

Query: 550  APGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFKNA 584
            +  ++ ++ G                            ++GV+YY+  N   +    K +
Sbjct: 1044 SARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRS 1103

Query: 585  ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
            +     +          ++N +     ++   ++A EL+E A  I  +   P HP     
Sbjct: 1104 LEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYT 1163

Query: 645  YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683
              +LA  Y   G+LD A+ + E  V IR++  G  +P V
Sbjct: 1164 VKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSV 1202

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus tropicalis (taxid: 8364)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 35/279 (12%)

Query: 438  IGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
            + D Y +L R+        +A    Q++L   +T    +HP VA    +LA +Y +  K 
Sbjct: 937  LADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQLAGVYVQWKKF 996

Query: 491  RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
             +++   + AL I E    G      A  L  ++++Y   N+ EQA    +K++ I   A
Sbjct: 997  GDAEQLYKQALEISENAY-GADHPHAARELEALATLYHKQNKYEQAEHFRKKSVIIRQQA 1055

Query: 551  PGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFKNAI 585
              ++ ++ G                            ++GV+Y++  N   +    K ++
Sbjct: 1056 TRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVLYFLQNNLETAEQFLKRSL 1115

Query: 586  S-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
              + R +G         +LN +   C ++    +A EL+E A  I  +   P HP     
Sbjct: 1116 EMRERVLGPDHPDC-AQSLNNLAALCNEKKQYEKAEELYERALDIRRRALAPDHPSLAYT 1174

Query: 645  YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683
              +LA  Y   G++D A+ + E  V IR++  G  +P V
Sbjct: 1175 VKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSV 1213

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 135/336 (40%), Gaps = 75/336 (22%)

Query: 437  SIGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
            S+ D Y +L R+        +A    Q++L   +T    +HP+VA    +LA +Y ++ K
Sbjct: 914  SLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQSKK 973

Query: 490  LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
               ++   + AL I E    G     +A  L  ++ +Y+  N+ EQA +L +K+LKI   
Sbjct: 974  FGNAEQLYKQALEISENAY-GSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQK 1032

Query: 550  APGQQSTVAGIEA-------------------------QMGVMYYMLGNYSDSYDSFK-- 582
            +  ++ ++ G                            ++GV+YY+  N   +    K  
Sbjct: 1033 SARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRS 1092

Query: 583  -------------------NAISKL---------------RAIGERKSAF------FGVA 602
                               N ++ L               RA+  R+ A           
Sbjct: 1093 LEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYT 1152

Query: 603  LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
            +  + +   ++  +++AV L+E A  I ++  GP HP       NLA  Y  + + DDA+
Sbjct: 1153 VKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDAL 1212

Query: 663  EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
             + E  + I E+ LG  +P V +  + LA L  E G
Sbjct: 1213 PLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEG 1248

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus laevis (taxid: 8355)

>sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYER 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G  +  VA  +  +   Y   G YS++   +K  +++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYSEAETLYKEILTR 408

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYES 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
             G  +  VA  +  +   Y   G YS++   +K  ++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILT 407

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Mus musculus (taxid: 10090)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 347 PRVGETCRYLA-----EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           P   ET + L      E  + A QF++     QMA   +     PA L     R L  L+
Sbjct: 159 PVTNETLQELGFGPEDEEDMNASQFNQPTPANQMAASANVGYEIPARL-----RTLHNLV 213

Query: 402 CE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            +  ++G +E A  L    L  +   +     +VA++   +   Y   ++Y EA     +
Sbjct: 214 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAANLLNE 273

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           AL+  +   GE+HPAVA+    LA ++ + GK ++++  C+ AL I EK V G    ++A
Sbjct: 274 ALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREK-VLGDDHPDVA 332

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGIEAQMGVMYYMLGNYSD 576
             L +++ + ++  + E+  K  ++AL+IY    G     VA  +  +   Y   G Y +
Sbjct: 333 KQLNNLALLCQNQGKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKE 392

Query: 577 SYDSFKNAISK 587
           + + +K  +++
Sbjct: 393 AEELYKQILTR 403

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEG 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G  +  VA  +  +   Y   G Y+++   +K  +++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 408

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 129/336 (38%), Gaps = 77/336 (22%)

Query: 438  IGDTYLSLSRY-------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
            + + Y +L R+        +A    Q++L   +T    +HP+VA    +LA +Y    K 
Sbjct: 920  LANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVHWRKF 979

Query: 491  RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
              ++   + A+ I E    G     +A  L  +S +Y+  N+ EQA KL ++++KI    
Sbjct: 980  GNAEQLYKQAMEICENAY-GPEHSTVARELDSLSLLYQKQNKYEQAEKLRKRSVKIRQKT 1038

Query: 551  PGQQSTVAGIEA-------------------------QMGVMYYMLGN------------ 573
              Q+  + G                            ++GV+YY+  N            
Sbjct: 1039 ARQKGHMYGFALLKRRALQLEELTLGKDSTDCAKTLNELGVLYYLQNNLDAAKLFLTRSL 1098

Query: 574  ----------YSDSYDSFKNAISKL---------------RAIGERKSAF------FGVA 602
                      + D   S  N ++ L               RA+  RK A           
Sbjct: 1099 EMRQRVLGPDHPDCAQSLNN-LAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYT 1157

Query: 603  LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
            L  + +   +R  + +AV L+E A  I E+  GP HP       NLA  Y  + +  DA+
Sbjct: 1158 LKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVLYCQLKQHSDAL 1217

Query: 663  EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
             + E  + + E+ LG  +P V +  + LA L  E G
Sbjct: 1218 PLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEG 1253

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
           VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK 
Sbjct: 249 VATMLNILALVYRGQNKYKEAALLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKY 308

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
           +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  ++AL IY   
Sbjct: 309 KEAEPLCQRALEIREK-VLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQ 367

Query: 551 PGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            G  +  VA  +  +   Y   G Y+++   +K  +++
Sbjct: 368 LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 405

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	727
255540685	767	kinesin light chain, putative [Ricinus c	0.997	0.945	0.791	0.0
359491584	757	PREDICTED: uncharacterized protein LOC10	0.986	0.947	0.782	0.0
449477406	736	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.990	0.978	0.739	0.0
449440678	736	PREDICTED: uncharacterized protein LOC10	0.990	0.978	0.738	0.0
356507244	761	PREDICTED: uncharacterized protein LOC10	0.987	0.943	0.707	0.0
356518977	753	PREDICTED: uncharacterized protein LOC10	0.986	0.952	0.696	0.0
224133522	624	predicted protein [Populus trichocarpa]	0.852	0.993	0.772	0.0
359488843	710	PREDICTED: uncharacterized protein LOC10	0.953	0.976	0.680	0.0
357461993	767	Kinesin light chain [Medicago truncatula	0.988	0.937	0.664	0.0
357461995	795	Kinesin light chain [Medicago truncatula	0.988	0.904	0.664	0.0

>gi|255540685|ref|XP_002511407.1| kinesin light chain, putative [Ricinus communis] gi|223550522|gb|EEF52009.1| kinesin light chain, putative [Ricinus communis]

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/766 (79%), Positives = 661/766 (86%), Gaps = 41/766 (5%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQ---------PDGE 51
           MPGI+MD  +EE +V+E+N NS P+KEN++SNKSP+ST  PQSP            P GE
Sbjct: 1   MPGIVMDGNNEEAIVNEMNDNSVPIKENAMSNKSPRSTLSPQSPCSNSVDLPAGGVPVGE 60

Query: 52  --------------------GVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSE 91
                               GVDTSIEQLYENVCDMQSSD SPSRHSFGSDGEESRIDSE
Sbjct: 61  LTVDEVVVNEVAADETSVHGGVDTSIEQLYENVCDMQSSDLSPSRHSFGSDGEESRIDSE 120

Query: 92  LRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISS 151
           LRHLVGGEMREVEIM+EEEV+KPE+D+HS SSSKKGSSSGSKKSGKL K+QSA + SISS
Sbjct: 121 LRHLVGGEMREVEIMQEEEVDKPENDTHSNSSSKKGSSSGSKKSGKLNKNQSASSNSISS 180

Query: 152 GHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDK----GVKKSNAGATPMKKRKG----- 202
             SKK SH  +DSE SSK + K KS PEKPPIDK      KK+N G    KK +      
Sbjct: 181 NTSKKDSHIILDSEASSKLSPKSKSPPEKPPIDKRNDKNFKKANGGVKSTKKWRNSPLGG 240

Query: 203 -KLHKG-QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKP 260
            KL  G +D S++GL  P LG  LLKQ+R+LISSGDNPQKALELALRA+KSFEI ANGKP
Sbjct: 241 KKLQNGVEDSSDSGLGNPDLGRFLLKQSRDLISSGDNPQKALELALRASKSFEICANGKP 300

Query: 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320
           SLELVM LHV+AAIYCS+GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM
Sbjct: 301 SLELVMSLHVVAAIYCSVGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 360

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
           LGQLENS  CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF +A++ CQMALDIH
Sbjct: 361 LGQLENSTKCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFDDAKRLCQMALDIH 420

Query: 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440
           ++NG+PAS EEAADRRLMGLICETKGDHEAALEHLVLASM M+AN Q+AEVASVDCSIGD
Sbjct: 421 RENGAPASPEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQEAEVASVDCSIGD 480

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500
           TYLSLSRYDEA FAYQKALTAFKT KGENHPAVA+VFVRLAD+YN+TGKLR+SKSYCENA
Sbjct: 481 TYLSLSRYDEAVFAYQKALTAFKTTKGENHPAVAAVFVRLADLYNKTGKLRDSKSYCENA 540

Query: 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560
           LRIYEKP PG+PPEEIASGLTDVS+IYESMNELEQAIKLLQKALKIYNDAPGQQST+AGI
Sbjct: 541 LRIYEKPAPGIPPEEIASGLTDVSAIYESMNELEQAIKLLQKALKIYNDAPGQQSTIAGI 600

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV 620
           EAQMGVMYYMLGNYS+SY++FKNA+SKLRA GERKSAFFG+ALNQMGLACVQRYSINEA 
Sbjct: 601 EAQMGVMYYMLGNYSESYNTFKNAVSKLRASGERKSAFFGIALNQMGLACVQRYSINEAA 660

Query: 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680
           ELFEEA+SILEQECGPYHPDTLGVYSNLAGTYDA+GRLDDAIEILE VVG+REEKLGTAN
Sbjct: 661 ELFEEAKSILEQECGPYHPDTLGVYSNLAGTYDAMGRLDDAIEILELVVGMREEKLGTAN 720

Query: 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNNDGIEV 725
           PDVDDEK+RLAELLKEAGRVRSRK +SLE LLD+NS  ++  GI V
Sbjct: 721 PDVDDEKKRLAELLKEAGRVRSRKGRSLENLLDSNSHSIDKAGIPV 766

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491584|ref|XP_002279663.2| PREDICTED: uncharacterized protein LOC100255253 [Vitis vinifera]

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/744 (78%), Positives = 645/744 (86%), Gaps = 27/744 (3%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGV------- 53
           MPG++M+ ++E+GV +ELNG+ST  KENS SNKSPKS    QSP   P   GV       
Sbjct: 1   MPGVVMEGVNEDGVANELNGSSTAFKENSASNKSPKSNLGLQSP---PRSAGVEFPMNGV 57

Query: 54  -DTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVE 112
            DTSIEQLY+NVC+MQSSDQSPSR SFGS+GEESRIDSELRHLVGGEMREVE + EEEVE
Sbjct: 58  IDTSIEQLYDNVCEMQSSDQSPSRVSFGSEGEESRIDSELRHLVGGEMREVE-IMEEEVE 116

Query: 113 KPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNS 172
           KP D+S S S SKK S S  K+ GK++KS+ + +KS+S  HSKK  +S ++SEVSSK+N 
Sbjct: 117 KPGDNSRSDSGSKKESLSAGKQFGKMDKSELS-SKSVSPVHSKK--NSQLESEVSSKSNP 173

Query: 173 KGKSLPEKPPIDK----GVKKSNAGATPMKKRKG------KLHKG-QDVSEAGLDKPGLG 221
           K +S   KPP DK     ++  NAG TP+KK++       KL  G  D SEAGLD P LG
Sbjct: 174 KSRSPQGKPPSDKRSEKNLRNPNAGVTPLKKQRNSPLGGVKLQNGTDDSSEAGLDNPNLG 233

Query: 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY 281
             LLKQAR+LISSGDNPQKALELALRA KS+E  ANGKPSLE VMCLHV AAIYC+LGQY
Sbjct: 234 RFLLKQARDLISSGDNPQKALELALRATKSYEKCANGKPSLEQVMCLHVTAAIYCNLGQY 293

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
           NEAIPVLE SIEIPVIEEGQ+HALAKFAGHMQLGDTYAM+GQLENS++CYTTGL VQKQV
Sbjct: 294 NEAIPVLEHSIEIPVIEEGQDHALAKFAGHMQLGDTYAMVGQLENSILCYTTGLGVQKQV 353

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           LG+TDPRVGETCRYLAEAHVQALQF EA+K CQMALDIH++NGSPASLEEAADRRLMGLI
Sbjct: 354 LGDTDPRVGETCRYLAEAHVQALQFDEAEKLCQMALDIHRENGSPASLEEAADRRLMGLI 413

Query: 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461
           CE KGDHEAALEHL+LASM M+AN Q+ EVASVDCSIGDTYLSLSRYDEA FAYQKALT 
Sbjct: 414 CEMKGDHEAALEHLILASMAMVANGQEIEVASVDCSIGDTYLSLSRYDEAIFAYQKALTV 473

Query: 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
           FKT KGENHP+VASVFVRLAD+YN+TGKLRESKSYCENALRIY KP+PG+PPEEIASGLT
Sbjct: 474 FKTTKGENHPSVASVFVRLADLYNKTGKLRESKSYCENALRIYGKPIPGIPPEEIASGLT 533

Query: 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581
           DVS+IYESM+ELEQA+ LLQKALKIYNDAPGQQST AGIEAQMGVMYYMLGNYSDSY+SF
Sbjct: 534 DVSAIYESMDELEQALSLLQKALKIYNDAPGQQSTTAGIEAQMGVMYYMLGNYSDSYNSF 593

Query: 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
           KNAISKLRA GE+KSAFFG+ALNQMGLACVQRY+INEA ELFEEAR ILEQE GPYHPDT
Sbjct: 594 KNAISKLRASGEKKSAFFGIALNQMGLACVQRYAINEAAELFEEARDILEQEYGPYHPDT 653

Query: 642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701
           LGVYSNLAGTYDA+GRLDDAIEILE VVG+REEKLGTANPDVDDEKRRLAELLKEAG+VR
Sbjct: 654 LGVYSNLAGTYDAVGRLDDAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGKVR 713

Query: 702 SRKAQSLETLLDANSR-VNNDGIE 724
           +RKA+SLETLLD NS+ VNND I+
Sbjct: 714 NRKARSLETLLDVNSQTVNNDDIK 737

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477406|ref|XP_004155014.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208453 [Cucumis sativus]

 Score = 1086 bits (2808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/741 (73%), Positives = 618/741 (83%), Gaps = 21/741 (2%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSP----RDQPDGEGVDTS 56
           MPGI+MD+I+EE  V++ NG+S  ++E S  NKSP+S    QSP     D P    VDTS
Sbjct: 1   MPGIVMDEINEERAVNKHNGSSIHIEE-SYENKSPRSGLSLQSPGSVHVDFPVDGLVDTS 59

Query: 57  IEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPED 116
           IE+LYENVCDMQSSDQSPSR SFGSDGEESRIDSEL HLVGGEMREVEI++EEE +  E 
Sbjct: 60  IEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEE-DIAEK 118

Query: 117 DSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKS 176
             H         S  + K  K E SQ   +K  S    +K  H  +D E S K++ +GK 
Sbjct: 119 HEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSG---RKSPHLQLDHETSPKSSPRGKG 175

Query: 177 LPEKPPI----DKGVKKSNAGATPMKKRK------GKLHKG-QDVSEAGLDKPGLGPLLL 225
           L +KPPI    +K  KK + GA  +KK+K       K+  G +D  E+ LD P LGP LL
Sbjct: 176 LMDKPPISRKNEKNSKKXSPGAAQLKKQKDSPLRGSKMQNGSEDFEESMLDNPDLGPFLL 235

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQAR L+SSG+N QKAL +ALRAAK+FE+ ANGKP+LELVMCLHV AAIYCSLGQY+EAI
Sbjct: 236 KQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAI 295

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P+LE SIEIP IEEG EHALAKFAGHMQLGDTYAMLGQLENSL+CYTTGLEVQKQVLGET
Sbjct: 296 PLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGET 355

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           DPRVGET RYLAEAHVQAL+F EA+KFCQMALDIHK N  PASLEEA DRRLMGLICETK
Sbjct: 356 DPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETK 415

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GDHEAALEHLVLASM M+AN Q+ +VA+VDCSIGD+YLSLSRYDEA FAYQKALT FKT 
Sbjct: 416 GDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTT 475

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHPAV SVFVRLAD+YN+TGK+RES SYCENALRIYEKPVPG+PPEEIASGLTD+++
Sbjct: 476 KGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAA 535

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IYESMNE+EQA+KLL KALKIYNDAPGQQ+T+AGIEAQMGV+YYMLGNYS+SY+SF NAI
Sbjct: 536 IYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAI 595

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            KLR  GE+KSAFFG+ALNQMGL CVQ+Y+INEAVELFEEA+SILEQE GPYHPDTLGVY
Sbjct: 596 PKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVY 655

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           SNLAGTYDAIGRLDDAIEILE+VVG+REEKLGTANPDVDDEKRRL+ELLKEAGRVRSRKA
Sbjct: 656 SNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKA 715

Query: 706 QSLETLLDANSR-VNNDGIEV 725
           +SLETLLDAN+  VN+ GI+V
Sbjct: 716 RSLETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440678|ref|XP_004138111.1| PREDICTED: uncharacterized protein LOC101208453 [Cucumis sativus]

 Score = 1083 bits (2801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/741 (73%), Positives = 618/741 (83%), Gaps = 21/741 (2%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSP----RDQPDGEGVDTS 56
           MPGI+MD+I+EE  V++ NG+S  ++E S  NKSP+S    QSP     D P    VDTS
Sbjct: 1   MPGIVMDEINEERAVNKHNGSSIHIEE-SYGNKSPRSGLSLQSPGSVHVDFPVDGLVDTS 59

Query: 57  IEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPED 116
           IE+LYENVCDMQSSDQSPSR SFGSDGEESRIDSEL HLVGGEMREVEI++EEE +  E 
Sbjct: 60  IEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEE-DIAEK 118

Query: 117 DSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKS 176
             H         S  + K  K E SQ   +K  S    +K  H  ++ E S K++ +GK 
Sbjct: 119 HEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSG---RKSPHLQLEHETSPKSSPRGKG 175

Query: 177 LPEKPPI----DKGVKKSNAGATPMKKRK------GKLHKG-QDVSEAGLDKPGLGPLLL 225
           L +KPPI    +K  KK++ GA  +KK+K       K+  G +D  E  LD P LGP LL
Sbjct: 176 LMDKPPISRKNEKNSKKNSPGAAQLKKQKDSPLRGSKMQNGSEDFEELMLDNPDLGPFLL 235

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQAR L+SSG+N QKAL +ALRAAK+FE+ ANGKP+LELVMCLHV AAIYCSLGQY+EAI
Sbjct: 236 KQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAI 295

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P+LE SIEIP IEEG EHALAKFAGHMQLGDTYAMLGQLENSL+CYTTGLEVQKQVLGET
Sbjct: 296 PLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGET 355

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           DPRVGET RYLAEAHVQAL+F EA+KFCQMALDIHK N  PASLEEA DRRLMGLICETK
Sbjct: 356 DPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETK 415

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GDHEAALEHLVLASM M+AN Q+ +VA+VDCSIGD+YLSLSRYDEA FAYQKALT FKT 
Sbjct: 416 GDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTT 475

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHPAV SVFVRLAD+YN+TGK+RES SYCENALRIYEKPVPG+PPEEIASGLTD+++
Sbjct: 476 KGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAA 535

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IYESMNE+EQA+KLL KALKIYNDAPGQQ+T+AGIEAQMGV+YYMLGNYS+SY+SF NAI
Sbjct: 536 IYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAI 595

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            KLR  GE+KSAFFG+ALNQMGL CVQ+Y+INEAVELFEEA+SILEQE GPYHPDTLGVY
Sbjct: 596 PKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVY 655

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           SNLAGTYDAIGRLDDAIEILE+VVG+REEKLGTANPDVDDEKRRL+ELLKEAGRVRSRKA
Sbjct: 656 SNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKA 715

Query: 706 QSLETLLDANSR-VNNDGIEV 725
           +SLETLLDAN+  VN+ GI+V
Sbjct: 716 RSLETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507244|ref|XP_003522379.1| PREDICTED: uncharacterized protein LOC100791625 [Glycine max]

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/748 (70%), Positives = 612/748 (81%), Gaps = 30/748 (4%)

Query: 1   MPGIIMDDIHEEGVVSELNGNS-TPVKENSVSNKSPKSTPCPQSP-RDQPD------GEG 52
           MPGI+ + + +EG  +E+NG+  +P KE     KSP+      SP R Q D      G+G
Sbjct: 12  MPGIVTNGVQDEGGSNEMNGDQDSPFKEPLNLVKSPRGGSV--SPGRGQGDDGANFGGDG 69

Query: 53  V-DTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEE-- 109
           V + SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSELRHLVGG MREVEIMEEE  
Sbjct: 70  VVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVG 129

Query: 110 EVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSS- 168
           E ++PE  S S  SS  G  S  KK  ++++ Q     + SSG ++K S   ++S+V S 
Sbjct: 130 EGKEPEGSSSSEISSALGGLSHDKKLDQVDEIQEVQPAATSSGSTEK-SVKALNSQVESD 188

Query: 169 ----KTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK----GK---LHKGQDVSEA 213
               K  SKG+S   K PI     K ++K   G T +K  K    GK    ++ + ++E+
Sbjct: 189 NTLPKLTSKGRSPLSKAPIPRKNGKPLRKPIGGVTGVKNTKNSPIGKSVSQNRVESMAES 248

Query: 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA 273
            L+KP   P+LLKQAR+LISSGDNPQKAL+LAL+A + FE   NGKPSLELVMCLHV AA
Sbjct: 249 ALEKPERAPVLLKQARDLISSGDNPQKALDLALQAMELFEKFGNGKPSLELVMCLHVTAA 308

Query: 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333
           IYCSLGQY EAIP+LE+SIEIPVI E Q+HALAKFAGHMQLGDTYAMLGQLENS+MCYTT
Sbjct: 309 IYCSLGQYAEAIPILERSIEIPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTT 368

Query: 334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAA 393
           GLEVQKQ+LGETDPRVGETCRY+AEA+VQALQF EA++ CQMALDIHK N S  S+EEAA
Sbjct: 369 GLEVQKQILGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANNSAPSVEEAA 428

Query: 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF 453
           DRRLMGLICETKG+HE ALEHLVLASM M+ N Q+AEVASVDCSIGDTYLSLSRYDEA F
Sbjct: 429 DRRLMGLICETKGNHETALEHLVLASMAMVNNGQEAEVASVDCSIGDTYLSLSRYDEAAF 488

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
           AYQKALT FKT+KGENHPAV  VFVRLAD+YNRTGK+RESKSYCENAL+IYE P+PGVP 
Sbjct: 489 AYQKALTVFKTSKGENHPAVGLVFVRLADLYNRTGKIRESKSYCENALKIYENPMPGVPL 548

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
           EEIASGLT++S+IYESMNELEQA+KLLQKAL+IY+D PGQQST+AGIEAQMGVMYYMLGN
Sbjct: 549 EEIASGLTNISTIYESMNELEQALKLLQKALEIYSDTPGQQSTIAGIEAQMGVMYYMLGN 608

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
           YS+SY++ K+AISKLRAIGE+KS+FFG+ALNQMGLACVQRY+++EA ELFEEA+SILEQE
Sbjct: 609 YSESYNTLKDAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQE 668

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693
            GPYHP+TLGVYSNLAGTYDAIGRLDDAI+ILE+VV  REEKLGTANP+VDDEKRRL EL
Sbjct: 669 YGPYHPETLGVYSNLAGTYDAIGRLDDAIQILEYVVNTREEKLGTANPEVDDEKRRLGEL 728

Query: 694 LKEAGRVRSRKAQSLETLLDANSRVNND 721
           LKEAGRVRSRKA+SLE LLD N+   N+
Sbjct: 729 LKEAGRVRSRKARSLENLLDGNAHAANN 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518977|ref|XP_003528151.1| PREDICTED: uncharacterized protein LOC100783201 [Glycine max]

 Score =  984 bits (2543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/752 (69%), Positives = 602/752 (80%), Gaps = 35/752 (4%)

Query: 1   MPGIIMDDIH-EEGVVSELNGN-STPVKENSVSNKSPKS-TPCPQSPRDQPDG------- 50
           MPGI+ + +H +EG  ++LNG+  +  KE     KSP+  +  PQ  R Q D        
Sbjct: 1   MPGIVRNGVHHDEGGSNDLNGDHDSTSKEPLNLVKSPRGGSVSPQ--RGQGDDGANFGGD 58

Query: 51  EGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEE 110
           E V+ SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSELRHLVGG MREVEIMEEE 
Sbjct: 59  EVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEV 118

Query: 111 VEK---PEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKK-----VSHSGM 162
            E+   PE  S S  SS  G  S  KK  ++++ Q     + SSG S+K     +S  G 
Sbjct: 119 GEEKGLPEGSSSSEISSALGGLSNDKKLNQVDEIQEVQPAATSSGSSEKSIKASISMVGP 178

Query: 163 DSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGAT---------PMKKRKGKLHKGQD 209
           D+  S K+ SKGK    K PI     K ++K  +GAT         PM K   + ++ + 
Sbjct: 179 DN-TSPKSTSKGKIPLSKAPIPRNNGKPLRKQISGATTGVKTTKNSPMGKSVSR-NRAES 236

Query: 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269
            +E+ L+KP   P+LLKQAR+LISSGDNP KAL+LAL+A K FE   N KPSLELVMCLH
Sbjct: 237 TAESALEKPERAPVLLKQARDLISSGDNPHKALDLALQAMKLFEKFGNEKPSLELVMCLH 296

Query: 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           V AAIYCSLGQY EAIP+LE+SIE+PVI E Q+HALAKFAGHMQLGDTYAMLGQLENS M
Sbjct: 297 VTAAIYCSLGQYGEAIPILERSIEVPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSTM 356

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
           CYTTGLEVQKQ+LGETDPRVGETCRY+AEA+VQALQF EA++ CQMALDIH  N S  SL
Sbjct: 357 CYTTGLEVQKQILGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHIANNSAPSL 416

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           EEAADRRLMGLICETKG+HE ALEHLVLASM M++NDQ+AEVASVDCSIGDTYLSLSRYD
Sbjct: 417 EEAADRRLMGLICETKGNHETALEHLVLASMAMVSNDQEAEVASVDCSIGDTYLSLSRYD 476

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           EA FAYQKALT FKT+KGENHPAV  VFVRLAD+YNRTGK+RESKSYCE+AL+IYE P+P
Sbjct: 477 EAVFAYQKALTVFKTSKGENHPAVGLVFVRLADLYNRTGKIRESKSYCESALKIYENPMP 536

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
           G+PPEEIASGLT++S+IYESMNELE A+KLLQKAL+IYND PGQQST+AGIEAQMGVMYY
Sbjct: 537 GIPPEEIASGLTNISTIYESMNELEHALKLLQKALEIYNDTPGQQSTIAGIEAQMGVMYY 596

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           MLGNYS SY++ KNAISKLRAIGE+KS+FFG+ALNQMGLACVQ Y+++EA ELFEEA+SI
Sbjct: 597 MLGNYSKSYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQCYALSEATELFEEAKSI 656

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689
           LEQE GPYHP+TLGV SNLA TYDAIGRLDDAI+ILE+VV  REEKLGTANP+VDDEKRR
Sbjct: 657 LEQEYGPYHPETLGVSSNLAATYDAIGRLDDAIQILEYVVNTREEKLGTANPEVDDEKRR 716

Query: 690 LAELLKEAGRVRSRKAQSLETLLDANSRVNND 721
           L ELLKEAGRVRSRK +SLE LLD N+   N+
Sbjct: 717 LGELLKEAGRVRSRKTRSLENLLDGNAHAANN 748

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133522|ref|XP_002321593.1| predicted protein [Populus trichocarpa] gi|222868589|gb|EEF05720.1| predicted protein [Populus trichocarpa]

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/664 (77%), Positives = 562/664 (84%), Gaps = 44/664 (6%)

Query: 53  VDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVE 112
           VDTSIEQLYENVCDMQSSDQSPSRHSF SDGEESRIDSEL HLVGGEMREVEIMEEEEV+
Sbjct: 4   VDTSIEQLYENVCDMQSSDQSPSRHSFASDGEESRIDSELCHLVGGEMREVEIMEEEEVD 63

Query: 113 KPEDDSHSISSSKKGSSSG-SKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTN 171
           KPE D+ S SSSKKG      K++ K  K  + G + +                      
Sbjct: 64  KPEHDTRSNSSSKKGKKPPIDKRNDKNLKKGNVGNRLM---------------------- 101

Query: 172 SKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQAREL 231
              K   + PP   GVK  N                    E+GLD P LG  LLKQAR+L
Sbjct: 102 ---KKRRDSPP--GGVKLLNGTK----------------DESGLDNPDLGRFLLKQARDL 140

Query: 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291
           +SSGDNPQKALELALRA+KSFEI ANGK SLELVMCLHV AAI+CS+GQY EAIP+LE S
Sbjct: 141 VSSGDNPQKALELALRASKSFEICANGKSSLELVMCLHVTAAIHCSIGQYREAIPILEHS 200

Query: 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351
           IEIPV EEGQEHALAKFAG+MQLGDTYAMLGQ+ENS  CY+TGLEVQK+VLGETDPRVGE
Sbjct: 201 IEIPVPEEGQEHALAKFAGYMQLGDTYAMLGQVENSTNCYSTGLEVQKKVLGETDPRVGE 260

Query: 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411
           TCRYLAEAHVQALQF +AQ  CQMALDIH++NGSPASLEEAADRRLMGLICETKGDHEAA
Sbjct: 261 TCRYLAEAHVQALQFDDAQMVCQMALDIHRENGSPASLEEAADRRLMGLICETKGDHEAA 320

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
           LEHLVLASM M+AN Q++EVAS+DC IGD YLSLSRYDEA FAYQKALTAFKT KGENHP
Sbjct: 321 LEHLVLASMAMVANGQESEVASIDCGIGDAYLSLSRYDEAVFAYQKALTAFKTTKGENHP 380

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
           +VASVFVRLAD+YN+TGK+R+SKSYCENALRIYEKPVPG+PPEEIASGL+DVS+IYESMN
Sbjct: 381 SVASVFVRLADLYNKTGKMRDSKSYCENALRIYEKPVPGIPPEEIASGLSDVSAIYESMN 440

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           EL+QAIKLL KALKIYNDAPGQQST+AGIEAQMGVMYYM+GNYS+SY+SFKNAISKLRA 
Sbjct: 441 ELDQAIKLLGKALKIYNDAPGQQSTIAGIEAQMGVMYYMMGNYSESYNSFKNAISKLRAS 500

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
           GE+KSAFFG+ALNQMGL+CVQRY+INEA ELFEEA+ ILEQECGPYHPDTLGVYSNLAGT
Sbjct: 501 GEKKSAFFGIALNQMGLSCVQRYAINEAAELFEEAKIILEQECGPYHPDTLGVYSNLAGT 560

Query: 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
           YDA+GRLDDAIEILE+VV +REEKLGTANPDV DEK+RLAELLKEAGRVRSRKA+SLE L
Sbjct: 561 YDAMGRLDDAIEILEYVVEMREEKLGTANPDVVDEKKRLAELLKEAGRVRSRKARSLENL 620

Query: 712 LDAN 715
           LD N
Sbjct: 621 LDGN 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488843|ref|XP_002274441.2| PREDICTED: uncharacterized protein LOC100254332 [Vitis vinifera]

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/741 (68%), Positives = 581/741 (78%), Gaps = 48/741 (6%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQP-----DGEGVDT 55
           MPG++MD +H +G+      N TP  +   SN SP S   PQS          DG  ++T
Sbjct: 1   MPGLVMDGLHRDGM-----ANYTP--KEGFSN-SPVSALSPQSHESGSIDLVIDGV-INT 51

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPE 115
           SIEQLY NVC+MQSSDQSPSR SF S G ESRIDSEL HLVGG   + E+M+E  + K  
Sbjct: 52  SIEQLYHNVCEMQSSDQSPSRRSFISYGNESRIDSELYHLVGGLFGDAEVMKEVVMMK-- 109

Query: 116 DDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGK 175
                        + G    G L  +Q A  KS+ S   K+ SH  ++SE S K+N    
Sbjct: 110 -------------NKGEDNEGNL--TQFASEKSVPSLQWKRPSHLHLESEGSPKSNPN-- 152

Query: 176 SLPEKPPIDK----GVKKSNAGATPMKKRKG-----KLHKG-QDVSEAGLDKPGLGPLLL 225
              E+PPIDK     ++K N G  P++K+K      K H G +D+ EAGLD P LGP LL
Sbjct: 153 ---ERPPIDKRRERNLRKPN-GVIPIRKQKNFASGVKFHNGTEDLLEAGLDNPDLGPFLL 208

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQ R+LISSG+NPQKALELALRA KSFEI  NGKP+LELVMCLHVIAAIYCSLGQY+EAI
Sbjct: 209 KQTRDLISSGENPQKALELALRAVKSFEITGNGKPNLELVMCLHVIAAIYCSLGQYDEAI 268

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P LE+SIEIPVIEEGQ HALAKF G MQLGDTYAM+GQ+ENS++CYT GLE+Q+QVLGE 
Sbjct: 269 PSLERSIEIPVIEEGQNHALAKFVGCMQLGDTYAMIGQIENSILCYTAGLEIQRQVLGEM 328

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           D R GETCRYLAEAHVQALQF EA+K CQMAL+IHK NG+PASLEEAADRRLM LIC++K
Sbjct: 329 DSRFGETCRYLAEAHVQALQFDEAKKLCQMALNIHKKNGTPASLEEAADRRLMALICDSK 388

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GD+EAALEH VLA M M AN Q+ + AS+DCSIGDTYLSL+RYDEA F+YQKALT FK+ 
Sbjct: 389 GDYEAALEHYVLAGMAMAANGQEIDAASIDCSIGDTYLSLARYDEAVFSYQKALTVFKST 448

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHP VASVFVRLAD+YN+ GKLRESKSYCENALR+Y KP PG+P EEIASGL D+S+
Sbjct: 449 KGENHPTVASVFVRLADLYNKVGKLRESKSYCENALRLYGKPNPGIPSEEIASGLIDISA 508

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           I+ESMNELEQA+KLLQKALKIY +APGQQST+AGIEAQMGV+YYM+GNYS SY+SF  AI
Sbjct: 509 IFESMNELEQALKLLQKALKIYGNAPGQQSTIAGIEAQMGVIYYMMGNYSASYNSFSCAI 568

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
           SKLRA GE+KSAF G+ALNQMGLACVQRY+I EA ELFEEARSILE+E GP HPDTLG+Y
Sbjct: 569 SKLRASGEKKSAFLGIALNQMGLACVQRYAIGEAAELFEEARSILEKEYGPCHPDTLGIY 628

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           SNLAGTYDA+GRL+DAIEILE+VVG+REEKLGTANPDVDDEKRRL ELL EAGRVRSRK 
Sbjct: 629 SNLAGTYDAMGRLEDAIEILEYVVGVREEKLGTANPDVDDEKRRLTELLTEAGRVRSRKT 688

Query: 706 QSLETLLDANSRVN-NDGIEV 725
           +SL+T LD N +   ND I+V
Sbjct: 689 RSLQTFLDTNPQTTINDAIKV 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461993|ref|XP_003601278.1| Kinesin light chain [Medicago truncatula] gi|355490326|gb|AES71529.1| Kinesin light chain [Medicago truncatula]

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/764 (66%), Positives = 605/764 (79%), Gaps = 45/764 (5%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQ-----SPRDQPDGEGVDT 55
           MPGI+ + +H++G V+E+NGN +P K +    KSP+S+  PQ      P  Q DG  V+ 
Sbjct: 1   MPGIVTNGVHDDGEVNEMNGNRSPTKASLTPIKSPRSSMSPQRRQSVGPNFQDDGV-VEP 59

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEV---- 111
           SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSEL HLVGG MRE+EIMEEE      
Sbjct: 60  SIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVG 119

Query: 112 EKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKS----ISSGHSKKVS--------- 158
            +P + S   +SS  G+ S  KK   + + QS G+KS    I SG    V          
Sbjct: 120 RRPGESSSGETSSGMGNLSDDKKMDMVAEIQS-GSKSPVIEIQSGSKSPVVKTRSSSKSP 178

Query: 159 ----------HSGMDSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK--- 201
                     +S + S+ S ++  KGKS P K P+    D+ ++K   G   +K  K   
Sbjct: 179 VSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSP 238

Query: 202 -GK---LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257
            GK   + + ++ +E+ LDKP   P+LLKQAR+L+S+GDNP KALELAL+A K FE   N
Sbjct: 239 LGKSVSMSRVENSAESALDKPEQAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGN 298

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
           GKPSLELVMCLHV AAIYCSLG+Y+EAIP+LE+SIEIP I E Q+HALAKFAGHMQLGDT
Sbjct: 299 GKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDT 358

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
           YAMLGQLENS+M YT G EVQ+ +LGETDPRVGETCRYLAEA+VQALQF+EA++ CQMAL
Sbjct: 359 YAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEELCQMAL 418

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
           DIH++N S  S+EEAADRRLMGLICETKG+HEAALEHLVLASM M+AN Q+AEVASVDCS
Sbjct: 419 DIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCS 478

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           IGDTYLSLSRYDEA FAY+KAL  FKT+KGENHPAV SVFVRLAD+YNRTGK+RESKSYC
Sbjct: 479 IGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYC 538

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
           + AL+IYE P+PGV PEEIASGLT++SSIYESMNE++QA+KLLQKAL+IYNDAPGQQ T+
Sbjct: 539 DKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTI 598

Query: 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           AGIEAQ+GVMYYMLGNY++SY++ K AI+KLRAIGE+KS+FFG+ALNQ+GLACVQRY++ 
Sbjct: 599 AGIEAQVGVMYYMLGNYTESYNTLKKAIAKLRAIGEKKSSFFGIALNQLGLACVQRYALR 658

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           EA+ELFEEA+S+LE E GPYHP+TLGVYSNLAGTYDAIGRLDDAI  LE VV +REEKLG
Sbjct: 659 EAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLG 718

Query: 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND 721
           TANPDVDDEKRRL+ELLKEAG+VRSRK +SLE L D ++   N+
Sbjct: 719 TANPDVDDEKRRLSELLKEAGKVRSRKVRSLENLFDGDAHTLNN 762

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461995|ref|XP_003601279.1| Kinesin light chain [Medicago truncatula] gi|355490327|gb|AES71530.1| Kinesin light chain [Medicago truncatula]

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/764 (66%), Positives = 605/764 (79%), Gaps = 45/764 (5%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQ-----SPRDQPDGEGVDT 55
           MPGI+ + +H++G V+E+NGN +P K +    KSP+S+  PQ      P  Q DG  V+ 
Sbjct: 29  MPGIVTNGVHDDGEVNEMNGNRSPTKASLTPIKSPRSSMSPQRRQSVGPNFQDDGV-VEP 87

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEV---- 111
           SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSEL HLVGG MRE+EIMEEE      
Sbjct: 88  SIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVG 147

Query: 112 EKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKS----ISSGHSKKVS--------- 158
            +P + S   +SS  G+ S  KK   + + QS G+KS    I SG    V          
Sbjct: 148 RRPGESSSGETSSGMGNLSDDKKMDMVAEIQS-GSKSPVIEIQSGSKSPVVKTRSSSKSP 206

Query: 159 ----------HSGMDSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK--- 201
                     +S + S+ S ++  KGKS P K P+    D+ ++K   G   +K  K   
Sbjct: 207 VSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSP 266

Query: 202 -GK---LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257
            GK   + + ++ +E+ LDKP   P+LLKQAR+L+S+GDNP KALELAL+A K FE   N
Sbjct: 267 LGKSVSMSRVENSAESALDKPEQAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGN 326

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
           GKPSLELVMCLHV AAIYCSLG+Y+EAIP+LE+SIEIP I E Q+HALAKFAGHMQLGDT
Sbjct: 327 GKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDT 386

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
           YAMLGQLENS+M YT G EVQ+ +LGETDPRVGETCRYLAEA+VQALQF+EA++ CQMAL
Sbjct: 387 YAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEELCQMAL 446

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
           DIH++N S  S+EEAADRRLMGLICETKG+HEAALEHLVLASM M+AN Q+AEVASVDCS
Sbjct: 447 DIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCS 506

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           IGDTYLSLSRYDEA FAY+KAL  FKT+KGENHPAV SVFVRLAD+YNRTGK+RESKSYC
Sbjct: 507 IGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYC 566

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
           + AL+IYE P+PGV PEEIASGLT++SSIYESMNE++QA+KLLQKAL+IYNDAPGQQ T+
Sbjct: 567 DKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTI 626

Query: 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           AGIEAQ+GVMYYMLGNY++SY++ K AI+KLRAIGE+KS+FFG+ALNQ+GLACVQRY++ 
Sbjct: 627 AGIEAQVGVMYYMLGNYTESYNTLKKAIAKLRAIGEKKSSFFGIALNQLGLACVQRYALR 686

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           EA+ELFEEA+S+LE E GPYHP+TLGVYSNLAGTYDAIGRLDDAI  LE VV +REEKLG
Sbjct: 687 EAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLG 746

Query: 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND 721
           TANPDVDDEKRRL+ELLKEAG+VRSRK +SLE L D ++   N+
Sbjct: 747 TANPDVDDEKRRLSELLKEAGKVRSRKVRSLENLFDGDAHTLNN 790

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	727
TAIR|locus:2015959	650	KLCR3 "AT1G27500" [Arabidopsis	0.755	0.844	0.680	5.2e-210
TAIR|locus:2086834	663	KLCR2 "kinesin light chain-rel	0.763	0.837	0.641	3.7e-207
TAIR|locus:2123411	609	KLCR1 "kinesin light chain-rel	0.672	0.802	0.654	6.5e-177
TAIR|locus:2042506	617	AT2G31240 "AT2G31240" [Arabido	0.638	0.752	0.276	1.8e-42
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.573	0.323	0.222	6.8e-20
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.353	0.687	0.254	1.5e-13
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.353	0.687	0.254	1.5e-13
ASPGD|ASPL0000046994	1262	AN9426 [Emericella nidulans (t	0.643	0.370	0.211	2.7e-13
ASPGD|ASPL0000061567	1185	AN1071 [Emericella nidulans (t	0.591	0.362	0.223	2.4e-12
ASPGD|ASPL0000010369	1488	tprA [Emericella nidulans (tax	0.602	0.294	0.221	2.5e-12

TAIR|locus:2015959 KLCR3 "AT1G27500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1897 (672.8 bits), Expect = 5.2e-210, Sum P(2) = 5.2e-210
 Identities = 382/561 (68%), Positives = 450/561 (80%)

Query:   165 EVSSKTNSKGKSL---P---EKPPIDKGVKKSNAGATPMKKRK-G--KLHKGQDVSEAXX 215
             E   K+NS    L   P   EK    K V KSN G   M+K+K G  KL  G +  E   
Sbjct:    84 EFDVKSNSSNLDLEVMPRDMEKQTGKKNVTKSNVGVGGMRKKKVGGTKLQNGNE--EPSS 141

Query:   216 XXXXXXXXXXXQARELISSGDNPQKALELALRAAKSFEIGA-NGKPSLELVMCLHVIAAI 274
                        QAR L+SSGD+  KALEL  RAAK FE  A NGKP LE +MCLHV AA+
Sbjct:   142 ENVELARFLLNQARNLVSSGDSTHKALELTHRAAKLFEASAENGKPCLEWIMCLHVTAAV 201

Query:   275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334
             +C L +YNEAIPVL++S+EIPV+EEG+EHALAKFAG MQLGDTYAM+GQLE+S+ CYT G
Sbjct:   202 HCKLKEYNEAIPVLQRSVEIPVVEEGEEHALAKFAGLMQLGDTYAMVGQLESSISCYTEG 261

Query:   335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394
             L +QK+VLGE DPRVGETCRYLAEA VQAL+F EAQ+ C+ AL IH+++G P S+ EAAD
Sbjct:   262 LNIQKKVLGENDPRVGETCRYLAEALVQALRFDEAQQVCETALSIHRESGLPGSIAEAAD 321

Query:   395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             RRLMGLICETKGDHE ALEHLVLASM M AN Q++EVA VD SIGD+YLSLSR+DEA  A
Sbjct:   322 RRLMGLICETKGDHENALEHLVLASMAMAANGQESEVAFVDTSIGDSYLSLSRFDEAICA 381

Query:   455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
             YQK+LTA KT KGENHPAV SV++RLAD+YNRTGK+RE+KSYCENALRIYE     + PE
Sbjct:   382 YQKSLTALKTAKGENHPAVGSVYIRLADLYNRTGKVREAKSYCENALRIYESHNLEISPE 441

Query:   515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
             EIASGLTD+S I ESMNE+EQAI LLQKALKIY D+PGQ+  +AGIEAQMGV+YYM+G Y
Sbjct:   442 EIASGLTDISVICESMNEVEQAITLLQKALKIYADSPGQKIMIAGIEAQMGVLYYMMGKY 501

Query:   575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
              +SY++FK+AISKLRA G+++S FFG+ALNQMGLAC+Q  +I EAVELFEEA+ ILEQEC
Sbjct:   502 MESYNTFKSAISKLRATGKKQSTFFGIALNQMGLACIQLDAIEEAVELFEEAKCILEQEC 561

Query:   635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694
             GPYHP+TLG+YSNLAG YDAIGRLDDAI++L  VVG+REEKLGTANP  +DEKRRLA+LL
Sbjct:   562 GPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEKLGTANPVTEDEKRRLAQLL 621

Query:   695 KEAGRVRSRKAQSLETLLDAN 715
             KEAG V  RKA+SL+TL+D++
Sbjct:   622 KEAGNVTGRKAKSLKTLIDSD 642

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2086834 KLCR2 "kinesin light chain-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1850 (656.3 bits), Expect = 3.7e-207, Sum P(2) = 3.7e-207
 Identities = 362/564 (64%), Positives = 449/564 (79%)

Query:   165 EVSSKTNSKGKSLPEKPPIDKGVK--KSNAGATPMKKRKGKLHKGQDVSEAXXXXXX--X 220
             E   ++N +G SL +K P+  G K  K++     M   +    K  D+ +          
Sbjct:    95 EKKEESNGEG-SLSQKKPLSNGKKVAKTSPNNPKMPGSRISSRKSPDLGKVSVDEESPEL 153

Query:   221 XXXXXXQARELISSGDNPQKALELALRAAKSFEIGANGKPSL--ELVMCLHVIAAIYCSL 278
                   QAREL+SSG+N  KAL+LALRA K FE    G+  L   LVM LH++AAIY  L
Sbjct:   154 GVVLLKQARELVSSGENLNKALDLALRAVKVFEKCGEGEKQLGLNLVMSLHILAAIYAGL 213

Query:   279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338
             G+YN+A+PVLE+SIEIP+IE+G++HALAKFAG MQLGD Y ++GQ+ENS+M YT GLE+Q
Sbjct:   214 GRYNDAVPVLERSIEIPMIEDGEDHALAKFAGCMQLGDMYGLMGQVENSIMLYTAGLEIQ 273

Query:   339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA--SLEEAADRR 396
             +QVLGE+D RVGETCRYLAEAHVQA+QF EA + CQMALDIHK+NG+ A  S+EEAADR+
Sbjct:   274 RQVLGESDARVGETCRYLAEAHVQAMQFEEASRLCQMALDIHKENGAAATASIEEAADRK 333

Query:   397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
             LMGLIC+ KGD+E ALEH VLASM M + +   +VA+VDCSIGD Y+SL+R+DEA FAYQ
Sbjct:   334 LMGLICDAKGDYEVALEHYVLASMAMSSQNHREDVAAVDCSIGDAYMSLARFDEAIFAYQ 393

Query:   457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             KAL  FK  KGE H +VA V+VRLAD+YN+ GK R+SKSYCENAL+IY KP PG P EE+
Sbjct:   394 KALAVFKQGKGETHSSVALVYVRLADLYNKIGKTRDSKSYCENALKIYLKPTPGTPMEEV 453

Query:   517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
             A+G  ++S+IY+SMNEL+QA+KLL++ALKIY +APGQQ+T+AGIEAQMGV+ YM+GNYS+
Sbjct:   454 ATGFIEISAIYQSMNELDQALKLLRRALKIYANAPGQQNTIAGIEAQMGVVTYMMGNYSE 513

Query:   577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
             SYD FK+AISK R  GE+K+A FG+ALNQMGLACVQRY+INEA +LFEEA++ILE+ECGP
Sbjct:   514 SYDIFKSAISKFRNSGEKKTALFGIALNQMGLACVQRYAINEAADLFEEAKTILEKECGP 573

Query:   637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
             YHPDTL VYSNLAGTYDA+GRLDDAIEILE+VVG REEKLGTANP+V+DEK+RLA LLKE
Sbjct:   574 YHPDTLAVYSNLAGTYDAMGRLDDAIEILEYVVGTREEKLGTANPEVEDEKQRLAALLKE 633

Query:   697 AGRVRSRKAQSLETLLDANSRVNN 720
             AGR RS++ ++L TLLD N  + N
Sbjct:   634 AGRGRSKRNRALLTLLDNNPEIAN 657

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2123411 KLCR1 "kinesin light chain-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1698 (602.8 bits), Expect = 6.5e-177, Sum P(2) = 6.5e-177
 Identities = 328/501 (65%), Positives = 414/501 (82%)

Query:   228 ARELISSGDNPQKALELALRAAKSFEI-----------GANGKPSLELVMCLHVIAAIYC 276
             AR+ I+SG+ P KAL+ A+RA KSFE            G++G P L+L M LHV+AAIYC
Sbjct:    92 ARDAIASGEGPNKALDYAIRATKSFERCCAAVAPPIPGGSDGGPVLDLAMSLHVLAAIYC 151

Query:   277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
             SLG+++EA+P LE++I++P    G +H+LA F+GHMQLGDT +MLGQ++ S+ CY  GL+
Sbjct:   152 SLGRFDEAVPPLERAIQVPDPTRGPDHSLAAFSGHMQLGDTLSMLGQIDRSIACYEEGLK 211

Query:   337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
             +Q Q LG+TDPRVGETCRYLAEA+VQA+QF++A++ C+  L+IH+ +  PASLEEAADRR
Sbjct:   212 IQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAADRR 271

Query:   397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
             LM +ICE KGD+E ALEHLVLASM MIA+ Q++EVAS+D SIG+ Y+SL R+DEA F+YQ
Sbjct:   272 LMAIICEAKGDYENALEHLVLASMAMIASGQESEVASIDVSIGNIYMSLCRFDEAVFSYQ 331

Query:   457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             KALT FK +KGE HP VASVFVRLA++Y+RTGKLRESKSYCENALRIY KPVPG   EEI
Sbjct:   332 KALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPVPGTTVEEI 391

Query:   517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
             A GLT++S+IYES++E E+A+KLLQK++K+  D PGQQS +AG+EA+MGVMYY +G Y D
Sbjct:   392 AGGLTEISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSAIAGLEARMGVMYYTVGRYED 451

Query:   577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
             + ++F++A++KLRA GE KSAFFGV LNQMGLACVQ + I+EA ELFEEAR ILEQE GP
Sbjct:   452 ARNAFESAVTKLRAAGE-KSAFFGVVLNQMGLACVQLFKIDEAGELFEEARGILEQERGP 510

Query:   637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
                DTLGVYSNLA TYDA+GR++DAIEILE V+ +REEKLGTANPD +DEK+RLAELLKE
Sbjct:   511 CDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKLGTANPDFEDEKKRLAELLKE 570

Query:   697 AGRVRSRKAQSLETLLDANSR 717
             AGR R+ KA+SL+ L+D N+R
Sbjct:   571 AGRSRNYKAKSLQNLIDPNAR 591

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2042506 AT2G31240 "AT2G31240" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 1.8e-42, P = 1.8e-42
 Identities = 132/477 (27%), Positives = 226/477 (47%)

Query:   235 GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
             G++P+K L  A +A KSF+ G   KP+L + M   ++ +    L ++++++  L ++  I
Sbjct:   132 GEDPEKVLSYADKALKSFD-GDGNKPNLLVAMASQLMGSANYGLKRFSDSLGYLNRANRI 190

Query:   295 PVIEEGQEHALAK------FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348
              V  E     + +       A  ++L +    +G+ E ++      LE+++    E    
Sbjct:   191 LVKLEADGDCVVEDVRPVLHAVQLELANVKNAMGRREEAIENLKKSLEIKEMTFDEDSKE 250

Query:   349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH 408
             +G   R LA+A+V  L F+EA  +   AL+IHK      S E A DRRL+G+I      H
Sbjct:   251 MGVANRSLADAYVAVLNFNEALPYALKALEIHKKELGNNSAEVAQDRRLLGVIYSGLEQH 310

Query:   409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468
             + ALE   L+   +       E+   +    +  ++L +Y+EA     K++   +T+K  
Sbjct:   311 DKALEQNRLSQRVLKNWGMKLELIRAEIDAANMKVALGKYEEA-IDILKSVVQ-QTDKDS 368

Query:   469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528
                A+  VF+ ++       K  ESK   E A  I EK    +P E +A   ++V+  YE
Sbjct:   369 EMRAM--VFISMSKALVNQQKFAESKRCLEFACEILEKKETALPVE-VAEAYSEVAMQYE 425

Query:   529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
             SMNE E AI LLQK L I    P +Q +   + A++G +    G  S +    ++A  +L
Sbjct:   426 SMNEFETAISLLQKTLGILEKLPQEQHSEGSVSARIGWLLLFSGRVSQAVPYLESAAERL 485

Query:   589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648
             +     K    G   N +G A ++      A ++F  A+ I++   GP H D++    NL
Sbjct:   486 KESFGAKHFGVGYVYNNLGAAYLELGRPQSAAQMFAVAKDIMDVSLGPNHVDSIDACQNL 545

Query:   649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL-LKEAGRVRSRK 704
             +  Y  +G    A+E  + V+   +    +A  ++ + KR L +L LK  G V + K
Sbjct:   546 SKAYAGMGNYSLAVEFQQRVINAWDNHGDSAKDEMKEAKRLLEDLRLKARGGVSTNK 602

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 273 (101.2 bits), Expect = 6.8e-20, P = 6.8e-20
 Identities = 97/436 (22%), Positives = 200/436 (45%)

Query:   239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
             +K  + AL A K   +G +   +L+ V  L ++   Y   G+  EA  + ++++      
Sbjct:   815 EKMYQRAL-AGKEKALGPDHTSTLDTVNNLGIL---YSDQGKLKEAEEMYQRALAGYEKA 870

Query:   299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358
              G +H       +  LG+ Y+  G+L+ +   Y   L+  ++ LG       +T   L  
Sbjct:   871 LGPDHTSTLVTVN-NLGNLYSDQGKLKEAEKMYQQALKGYEKALGPDHTSTLDTVNNLGS 929

Query:   359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHL 415
              +    +  EA++  Q AL   +    P           +G++ + +G   + E   +  
Sbjct:   930 LYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLDTVNNLGILYKNQGKLKEAEEMYQRA 989

Query:   416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
             +      +  D  + + +V+ ++G  Y    +  EA   YQ+AL  ++   G +H +   
Sbjct:   990 LAGKEKALGPDHTSTLMTVN-NLGSLYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLI 1048

Query:   476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT--DVSSIYESMNEL 533
                 L ++Y+  GKL+E++   + AL  YEK + G  P+  ++ +T  ++ ++Y    +L
Sbjct:  1049 TVNNLGNLYSDQGKLKEAEKMYQQALAGYEKAL-G--PDHTSTLVTVNNLGNLYSDQGKL 1105

Query:   534 EQAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL-RA 590
             ++A K+ Q+AL  Y  A  P   ST+  +   +G++Y   G   ++   ++ A++   +A
Sbjct:  1106 KEAEKMYQQALAGYEKAVGPDHTSTLDTVN-NLGILYSDQGKLKEAEKMYQQALAGYEKA 1164

Query:   591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
             +    ++   + +N +G     +  + EA E++++A +  E+  GP H  TL   +NL  
Sbjct:  1165 LSPDHTSTL-MTVNNLGSLYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLMTVNNLGI 1223

Query:   651 TYDAIGRLDDAIEILE 666
              Y   G+L +A E+ +
Sbjct:  1224 LYSDQGKLKEAEEMFQ 1239

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 68/267 (25%), Positives = 118/267 (44%)

Query:   438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
             +   YL+ +R+ EA   Y++ L +F    G NHP  A+    LA++   T +  E++S  
Sbjct:    71 VAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAESLY 130

Query:   498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-T 556
               AL I ++   G+   +    L +++ +       E A  L ++A+ I     G++   
Sbjct:   131 RQALEI-DREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHYR 189

Query:   557 VAGIEAQM-GVMYYMLGNYSDSYDSFKNAIS-KLRAIGERKSAFFGVALNQMG--LACVQ 612
              A  +  + G++  ML  + ++    + A+    + +GE  S +    LN +   L   +
Sbjct:   190 YATAQNNLAGLLQDML-RFEEAEALCRQALEITSKTLGESHSVY-ATRLNNLAELLGTTE 247

Query:   613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672
             RY   EA  L+ +A  I ++  G  HPD     +NLA    A GR ++A  +    + I 
Sbjct:   248 RYG--EAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEIT 305

Query:   673 EEKLGTANPDVDDEKRRLAELLKEAGR 699
                LG A+PD        A LL    R
Sbjct:   306 HRTLGEAHPDYATRLNNFAGLLDSTER 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 68/267 (25%), Positives = 118/267 (44%)

Query:   438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
             +   YL+ +R+ EA   Y++ L +F    G NHP  A+    LA++   T +  E++S  
Sbjct:    71 VAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAESLY 130

Query:   498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-T 556
               AL I ++   G+   +    L +++ +       E A  L ++A+ I     G++   
Sbjct:   131 RQALEI-DREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHYR 189

Query:   557 VAGIEAQM-GVMYYMLGNYSDSYDSFKNAIS-KLRAIGERKSAFFGVALNQMG--LACVQ 612
              A  +  + G++  ML  + ++    + A+    + +GE  S +    LN +   L   +
Sbjct:   190 YATAQNNLAGLLQDML-RFEEAEALCRQALEITSKTLGESHSVY-ATRLNNLAELLGTTE 247

Query:   613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672
             RY   EA  L+ +A  I ++  G  HPD     +NLA    A GR ++A  +    + I 
Sbjct:   248 RYG--EAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEIT 305

Query:   673 EEKLGTANPDVDDEKRRLAELLKEAGR 699
                LG A+PD        A LL    R
Sbjct:   306 HRTLGEAHPDYATRLNNFAGLLDSTER 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000046994 AN9426 [Emericella nidulans (taxid:162425)]

 Score = 212 (79.7 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 103/488 (21%), Positives = 203/488 (41%)

Query:   237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             N  + L+  +  A+   +G     +L  V   H +A+ Y + G+++EA  + EQ I+   
Sbjct:   759 NEAEKLQAQVIEARKKVLGPEHPSTLTSV---HNLASTYRNQGRWSEAEELQEQVIKTWK 815

Query:   297 IEEGQEHALAKFA-GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355
                G +H     + G++ L   Y   G+ + +       +E +KQVLG   P    +   
Sbjct:   816 QVLGLKHPFTLTSMGNLAL--IYWNRGRWKEAEELLAQVMENRKQVLGLVHPDTLASVHN 873

Query:   356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAAL 412
             LA  ++   ++ EA++     ++  K        +       +      +G   + E  L
Sbjct:   874 LAATYLDRGRWKEAEELFVQLVETRKQVVGLEHPDTLTSMHNLASTYRNQGRWKEAEELL 933

Query:   413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472
              H++ A   ++ ++  + + S+  ++   +    R+ EA     + +   K   G  HP 
Sbjct:   934 THILEAWKRVMGSEHPSTLTSMH-NLASIFWCQGRWKEAEELLTEVIETRKRVLGPEHPD 992

Query:   473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532
               S    LA  Y   G  +E++      +    K V G       + + +++S Y++   
Sbjct:   993 TLSSLHNLASRYLDIGHWKEAEGLLAQVMET-RKQVLGPAHPSTLTCMHNLASAYQNQGR 1051

Query:   533 LEQAIKLLQKALKIYNDAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK-LR 589
             LE+A +L  + ++ +    G +  ST+  ++  +   Y   G ++++ +     +    +
Sbjct:  1052 LEEAEELQVRVMEAWKQVVGSKHPSTLTSMD-NLATTYRKQGRWNEAEELQVQVMETWTQ 1110

Query:   590 AIG-ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648
              +G E       +A N   L   Q    N+A +L  +     +Q  GP HP TL    NL
Sbjct:  1111 VLGPEHPDTLISMA-NLASLYYNQG-QWNKAEKLQVQVMETRKQVLGPEHPHTLTSMLNL 1168

Query:   649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708
             A T+  +G   DA+ +++   G+  + LG+ +P        L E   EA ++   K Q  
Sbjct:  1169 AFTFKNLGNNLDALRLIKGYAGLCNKVLGSNHPQAILSLSTLNEWESEAEQLT--KGQKQ 1226

Query:   709 ETLLDANS 716
             +TL D +S
Sbjct:  1227 QTLADTSS 1234

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

ASPGD|ASPL0000061567 AN1071 [Emericella nidulans (taxid:162425)]

 Score = 203 (76.5 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 101/452 (22%), Positives = 179/452 (39%)

Query:   271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
             IA    S G+Y EA  +  + +E      G E   A       L  TY   G+L  +   
Sbjct:   727 IANCLLSDGRYLEAEVLYVKLLEFQK-RNGPEDP-ATLRSMANLASTYWSQGRLNEAEKL 784

Query:   331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                 +E  K VLG   P    +   LA  +    +++EA+K   + + + + + +    E
Sbjct:   785 EVQVMETSKIVLGAEHPDTLTSMANLASTYRNQGRWNEAEK---LEVQVMESSKTVLGAE 841

Query:   391 EAADRRLMGLICET---KGD-HEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444
                    M  I  T   +G  HEA     H++     ++  +  A + S+  ++  TY +
Sbjct:   842 HPDTLSSMSNIASTLWNQGRFHEAEKLFIHVMETRKIVLGVEHPATLTSM-ANLASTYQN 900

Query:   445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
               R++EA     + +   K   G  HP+  S    LA  Y   G+  E++      + I 
Sbjct:   901 QGRWNEAEKLEIQVMETSKITLGVKHPSTLSSMANLASTYRSQGRWNEAEKLFLQVMEI- 959

Query:   505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ--STVAGIEA 562
                V G       S + +++S Y +     +A KL  + +       G +  ST++ + A
Sbjct:   960 RNIVLGAKHPSTLSSMANLASTYRNQGRWNEAEKLEVQVIDTAKTVLGAEHPSTLSSM-A 1018

Query:   563 QMGVMYYMLGNYSDSYDSFKNAISKLRAI--GERKSAFFGVALNQMGLACVQ-RYSINEA 619
              +   Y   G ++++       I+  + +   E  +    +A N       Q R+  NEA
Sbjct:  1019 NLASTYRNQGRWNEAERLEVQVINTAKTVLGAEHPNTLSSMA-NLASTYWSQGRW--NEA 1075

Query:   620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679
              +L  +     +   G  HP+TL   ++LA TY   GR + A ++   V   R+  LG  
Sbjct:  1076 EKLEVQVIEAFKTVLGSKHPNTLRSIAHLASTYQKQGRWNKAEKLFMHVTETRKIMLGVE 1135

Query:   680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
             +PD       LA   +  GR    +  S++ +
Sbjct:  1136 HPDTLSSMANLASTYRNQGRWDKAEKLSMQVM 1167

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ASPGD|ASPL0000010369 tprA [Emericella nidulans (taxid:162425)]

 Score = 204 (76.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 101/456 (22%), Positives = 187/456 (41%)

Query:   271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
             +A+ Y S G++ EA  +  Q +E      G  H          L  TY   G+ + +   
Sbjct:    22 LASTYQSQGRWREAEWLEVQVMETRKQVLGSWHP-DTLTSMANLASTYWNQGRWKEAEAL 80

Query:   331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                 +E +KQVLG   P    +   LA  +    ++ EA+      ++  +    P    
Sbjct:    81 EVQVMETRKQVLGSWHPDTLTSKANLALTYQYQGRWKEAEWLEVQVMETRQQVLGPEHPN 140

Query:   391 EAADRRLMGLICETKGDHEAALEHL---VL-ASMTMIANDQDAEVASVDCSIGDTYLSLS 446
                    + L    +G  + A E L   V+  S  ++ +D D  +AS+  ++  TY S  
Sbjct:   141 TLTSMANLALTYRNQGQLKEA-ERLGVQVMETSKQVLGSDHDDTLASM-ANLASTYWSQG 198

Query:   447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
             ++ EA   + + L   K   G  HP   +    LA  Y   G+ +E++     A+ I   
Sbjct:   199 KWKEAEALFIRVLNTQKQVLGLEHPDTLASMADLASTYQNQGQWKEAEELFIQAMEIQTT 258

Query:   507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA--PGQQSTVAGIEAQM 564
              +    P+ + S   +++S Y S   L+QA +L  + ++       P    T+  + A +
Sbjct:   259 VLGSEHPDTLIS-TANLASTYRSQGRLKQAERLGVQVMETSKQVLGPDHPYTLTSM-ANL 316

Query:   565 GVMYYMLGNYSDSYDSFKNAIS-KLRAIG-ERKSAFFGVALNQMGLACVQRYSINEAVEL 622
                Y+  G + ++   F   ++ + + +G E       +A   +      +     A +L
Sbjct:   317 ASTYWSQGKWKEAEALFIRVLNTQKQVLGLEHPDTLASMA--DLASTYQNQGQWKTAEQL 374

Query:   623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
             F +     +   GP H +TL   +NLA      G+   A E+   VV  R++ LG  +P 
Sbjct:   375 FIQVMESQKLVLGPEHTNTLTTMANLASVLLRQGQWRQAEELHLRVVETRKKGLGEVDPP 434

Query:   683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRV 718
               +    LA + K  GR+   +A+ LE  ++ ++R+
Sbjct:   435 TLNSMVDLASIYKHQGRLA--EAKELERQIE-DARI 467

GO:0008150 "biological_process" evidence=ND

GO:0005871 "kinesin complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	727
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-10
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	9e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	5e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 17/111 (15%)

Query: 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495
            ++G+ Y  L  YDEA   Y+KAL     N        A  +  LA  Y + GK  E+  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDN--------ADAYYNLAAAYYKLGKYEEALE 55

Query: 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
             E AL +             A    ++   Y  + + E+A++  +KAL++
Sbjct: 56  DYEKALELDPDN---------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           ++A+   ++      L  YDEA    +KAL   +   GE+HP  A     LA +Y   G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGD 61

Query: 490 LRESKSYCENALRIYEK 506
             E+  Y E AL + E 
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529
           HP +A+    LA +  R G   E+    E AL +  + +    P E A  L +++ +Y +
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHP-ETARALNNLARLYLA 58

Query: 530 MNELEQAIKLLQKALKIY 547
           + + ++A++ L+KAL + 
Sbjct: 59  LGDYDEALEYLEKALALR 76

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661
           ALN + L   +    +EA+EL E+A  +   E G  HP+T    +NLA  Y A+G  D+A
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 662 IEILEFVVGIREE 674
           +E LE  + +RE 
Sbjct: 66  LEYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.1 bits (128), Expect = 9e-08
 Identities = 70/312 (22%), Positives = 127/312 (40%), Gaps = 40/312 (12%)

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
              L LA +        AE  ++  +       L    EA    ++AL      +   + 
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEAL------ELLPNS 56

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
            +A + + LA    + G+L E+    E AL +   P        +A  L ++  + E++ 
Sbjct: 57  DLAGLLLLLALALLKLGRLEEALELLEKALELELLP-------NLAEALLNLGLLLEALG 109

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           + E+A++LL+KAL +  D    ++ +A          Y LG+Y ++ + ++ A+      
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALG------ALYELGDYEEALELYEKALELDPE- 162

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
                      LN++  A +   ++ EA+  +EEA  +LE+       D      NL   
Sbjct: 163 -----------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211

Query: 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
           Y  +G+ ++A+E          EK    +PD  +    LA LL E GR        LE  
Sbjct: 212 YLKLGKYEEALEYY--------EKALELDPDNAEALYNLALLLLELGRYEEALEA-LEKA 262

Query: 712 LDANSRVNNDGI 723
           L+ +  + N G+
Sbjct: 263 LELDPDLYNLGL 274

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
            LG+ Y  LG  + +L  Y   LE+        DP   +    LA A+ +  ++ EA + 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418
            + AL++  DN              +GL     G +E ALE    A
Sbjct: 57  YEKALELDPDNAKA--------YYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.0 bits (120), Expect = 1e-06
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 25/246 (10%)

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
                 + AL   +  +  +    + K          A     +GL+ E  G +E ALE 
Sbjct: 58  LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L       +A D D ++A    ++G     L  Y+EA   Y+KAL              A
Sbjct: 118 L----EKALALDPDPDLAEALLALG-ALYELGDYEEALELYEKALELDPELNEL-----A 167

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
              + L  +    G+  E+    E AL++                  D +    ++  L 
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKLNPD---------------DDAEALLNLGLLY 212

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
             +   ++AL+ Y  A       A     + ++   LG Y ++ ++ + A+     +   
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNL 272

Query: 595 KSAFFG 600
             A   
Sbjct: 273 GLALLL 278

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML 321
            +L   L+ +A +   LG Y+EA+ +LE+++E+    E  E           L   Y  L
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALEL--ARELGEDHPETARALNNLARLYLAL 59

Query: 322 GQLENSLMCYTTGLEVQKQ 340
           G  + +L      L +++ 
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 15/107 (14%)

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           +Y  + + ++A++  +KAL++  D     +  A     +   YY LG Y ++ + ++ A+
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPD-----NADA--YYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
                           A   +GLA  +     EA+E +E+A  +   
Sbjct: 62  ELDPD--------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
            +G +YY LG+Y ++ + ++ A+                A   +  A  +     EA+E 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           +E+A   LE +     PD    Y NL   Y  +G+ ++A+E  E
Sbjct: 57  YEKA---LELD-----PDNAKAYYNLGLAYYKLGKYEEALEAYE 92

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 74/401 (18%), Positives = 140/401 (34%), Gaps = 76/401 (18%)

Query: 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334
             +L QY      L++++ I  + E  + A       + LG      G L  ++  +   
Sbjct: 570 ALALAQYYLGKGQLKKALAI--LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

Query: 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394
           L +Q        P        LA+A+     +++A    + AL++  DN         A 
Sbjct: 628 LALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN-------TEAQ 672

Query: 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             L  L+   K   E+A +   +A      + + A    +    GD YL    Y  A  A
Sbjct: 673 IGLAQLLLAAK-RTESAKK---IAKSLQKQHPKAALGFEL---EGDLYLRQKDYPAAIQA 725

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           Y+KAL    +         +   ++L      +G   E+    E  L+ +          
Sbjct: 726 YRKALKRAPS---------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL---- 772

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
                 T ++ +Y +  + ++AIK  Q  +K   D     + +A +  +           
Sbjct: 773 -----RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE----------- 816

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVA-----LNQMGLACVQRYSINEAVELFEEARSI 629
               D         RA+   + A          L+ +G   V++   + A+ L  +A +I
Sbjct: 817 --LKDP--------RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670
                    P+   +  +LA    A GR  +A + L+ ++ 
Sbjct: 867 A--------PEAAAIRYHLALALLATGRKAEARKELDKLLN 899

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)

Query: 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282
            LL         G +  +ALE   +A +      +   +       + +AA Y  LG+Y 
Sbjct: 2   ALLNLGNLYYKLG-DYDEALEYYEKALE-----LDPDNAD----AYYNLAAAYYKLGKYE 51

Query: 283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340
           EA+   E+++E+                +  LG  Y  LG+ E +L  Y   LE+   
Sbjct: 52  EALEDYEKALEL---------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +G +    GD++ ALE+   A       + D + A    ++   Y  L +Y+EA   Y+K
Sbjct: 6   LGNLYYKLGDYDEALEYYEKAL------ELDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
           AL        E  P  A  +  L   Y + GK  E+    E AL +   
Sbjct: 60  AL--------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
              L      LG  + +L      LE+ ++ LGE  P        LA  ++    + EA 
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 371 KFCQMALDIHKD 382
           ++ + AL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.4 bits (108), Expect = 2e-05
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 26/217 (11%)

Query: 247 RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306
            A +  E     +    L   L  +  +  +LG+Y EA+ +LE+++ +    +  E  LA
Sbjct: 77  EALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLA 136

Query: 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF 366
             A           LG  E +L  Y   LE     L      + E    L        ++
Sbjct: 137 LGA--------LYELGDYEEALELYEKALE-----LDPELNELAEALLALGALLEALGRY 183

Query: 367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426
            EA +  + AL ++ D+ + A L        +GL+    G +E ALE+         A +
Sbjct: 184 EEALELLEKALKLNPDDDAEALLN-------LGLLYLKLGKYEEALEYY------EKALE 230

Query: 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
            D + A    ++    L L RY+EA  A +KAL    
Sbjct: 231 LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616
           +A     + ++   LG+Y ++ +  + A+   R +GE        ALN +    +     
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGED-HPETARALNNLARLYLALGDY 62

Query: 617 NEAVELFEEARSILEQ 632
           +EA+E  E+A ++ E 
Sbjct: 63  DEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 15/78 (19%), Positives = 41/78 (52%)

Query: 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572
             ++A+ L +++ +   + + ++A++LL+KAL++  +        A     +  +Y  LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 573 NYSDSYDSFKNAISKLRA 590
           +Y ++ +  + A++   A
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           +  +Y  LG Y+EA+   E+++E+       ++A A    +  L   Y  LG+ E +L  
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALEL-----DPDNADA----YYNLAAAYYKLGKYEEALED 56

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382
           Y   LE+        DP   +    L  A+ +  ++ EA +  + AL++  +
Sbjct: 57  YEKALEL--------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539
           L ++Y + G   E+  Y E AL +             A    ++++ Y  + + E+A++ 
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDN---------ADAYYNLAAAYYKLGKYEEALED 56

Query: 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            +KAL++  D        A     +G+ YY LG Y ++ ++++ A+ 
Sbjct: 57  YEKALELDPD-------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 389 LEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSR 447
            + AA    + L+    GD++ ALE L  A  +     +   E A    ++   YL+L  
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 448 YDEAGFAYQKALTAFK 463
           YDEA    +KAL   +
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA 410
           E    L   + +   + EA ++ + AL++  DN              +       G +E 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA--------YYNLAAAYYKLGKYEE 52

Query: 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
           ALE    A       + D + A    ++G  Y  L +Y+EA  AY+KAL
Sbjct: 53  ALEDYEKAL------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 237 NPQKALELALRAAKSFE-IGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
           +  +ALEL  +A +    +G +     E    L+ +A +Y +LG Y+EA+  LE+++ +
Sbjct: 20  DYDEALELLEKALELARELGED---HPETARALNNLARLYLALGDYDEALEYLEKALAL 75

Length = 78

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
           T    +NLA    A GR ++A E+LE  + IR   LG  +PD
Sbjct: 1   TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42

Length = 42

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697
           HPD     +NLA     +G  D+A+E+LE  + +  E LG  +P+        A  L   
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPET-------ARALNNL 52

Query: 698 GRVRS---RKAQSLETLLDA 714
            R+        ++LE L  A
Sbjct: 53  ARLYLALGDYDEALEYLEKA 72

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
            P +      LA    +   + EA +  + AL++ ++ G     E A     +  +    
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELG-EDHPETARALNNLARLYLAL 59

Query: 406 GDHEAALEHL 415
           GD++ ALE+L
Sbjct: 60  GDYDEALEYL 69

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	727
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.98
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
KOG2003	840	consensus TPR repeat-containing protein [General f	99.92
PRK14574	822	hmsH outer membrane protein; Provisional	99.92
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.91
KOG1126	638	consensus DNA-binding cell division cycle control	99.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.91
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.9
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.89
PLN03218	1060	maturation of RBCL 1; Provisional	99.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.88
KOG2076	895	consensus RNA polymerase III transcription factor	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.87
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
PLN03218	1060	maturation of RBCL 1; Provisional	99.86
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.85
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.85
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.84
PLN03077	857	Protein ECB2; Provisional	99.83
PRK04841	903	transcriptional regulator MalT; Provisional	99.82
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.8
KOG1129	478	consensus TPR repeat-containing protein [General f	99.8
PLN03077	857	Protein ECB2; Provisional	99.8
PRK04841	903	transcriptional regulator MalT; Provisional	99.79
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.78
KOG1129	478	consensus TPR repeat-containing protein [General f	99.78
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.77
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.77
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.74
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.73
PRK12370	553	invasion protein regulator; Provisional	99.73
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.73
PRK12370	553	invasion protein regulator; Provisional	99.72
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.72
PRK11189	296	lipoprotein NlpI; Provisional	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.71
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.71
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.71
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.7
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.69
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.69
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.69
PRK11189	296	lipoprotein NlpI; Provisional	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.68
KOG1125	579	consensus TPR repeat-containing protein [General f	99.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG1125	579	consensus TPR repeat-containing protein [General f	99.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.67
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.65
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.62
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.56
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.51
PLN02789	320	farnesyltranstransferase	99.51
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.47
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.46
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.46
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.46
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.43
PLN02789	320	farnesyltranstransferase	99.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.42
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.4
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.38
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.37
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.33
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.32
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.32
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.29
PRK15359	144	type III secretion system chaperone protein SscB;	99.27
PRK15359	144	type III secretion system chaperone protein SscB;	99.24
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.21
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.21
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.21
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.21
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.2
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.18
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.11
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.1
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.09
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.06
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.05
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.03
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.03
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.02
KOG0553	304	consensus TPR repeat-containing protein [General f	99.02
KOG0553	304	consensus TPR repeat-containing protein [General f	99.01
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.01
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.0
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.0
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.97
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.94
KOG1585	308	consensus Protein required for fusion of vesicles	98.92
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.91
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.89
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.87
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.84
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.84
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.81
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.81
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.81
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.81
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.81
KOG1585	308	consensus Protein required for fusion of vesicles	98.8
KOG2471	696	consensus TPR repeat-containing protein [General f	98.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.79
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.79
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.76
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.76
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.73
KOG1586	288	consensus Protein required for fusion of vesicles	98.73
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.72
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.7
KOG2471	696	consensus TPR repeat-containing protein [General f	98.7
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.69
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.69
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.68
PRK10803	263	tol-pal system protein YbgF; Provisional	98.67
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.65
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.65
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.64
KOG1586	288	consensus Protein required for fusion of vesicles	98.64
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.64
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.62
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.61
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.59
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.52
PF12688	120	TPR_5: Tetratrico peptide repeat	98.52
PRK10803	263	tol-pal system protein YbgF; Provisional	98.52
PF12688	120	TPR_5: Tetratrico peptide repeat	98.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.5
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.47
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.45
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.45
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.43
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.41
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.39
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.38
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.37
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.35
KOG4234	271	consensus TPR repeat-containing protein [General f	98.33
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.32
KOG4234	271	consensus TPR repeat-containing protein [General f	98.31
PRK15331	165	chaperone protein SicA; Provisional	98.3
PRK11906	458	transcriptional regulator; Provisional	98.3
PRK15331	165	chaperone protein SicA; Provisional	98.3
KOG4555	175	consensus TPR repeat-containing protein [Function	98.29
KOG4555	175	consensus TPR repeat-containing protein [Function	98.29
PRK11906	458	transcriptional regulator; Provisional	98.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.28
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.27
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.25
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.25
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.25
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.24
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.24
PF13512	142	TPR_18: Tetratricopeptide repeat	98.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.23
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.23
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.19
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.19
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.18
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.15
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.13
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.11
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.1
PF13512	142	TPR_18: Tetratricopeptide repeat	98.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.08
PF13371	73	TPR_9: Tetratricopeptide repeat	98.07
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.05
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.05
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.0
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.0
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.99
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.96
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.96
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.95
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.94
PF13371	73	TPR_9: Tetratricopeptide repeat	97.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.85
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.81
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.76
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.71
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.67
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.67
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.66
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.65
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.65
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.6
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.58
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.55
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.54
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.53
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.49
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.49
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.49
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.44
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.42
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.35
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.33
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.33
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.33
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.32
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.32
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.31
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.31
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.29
PF13428	44	TPR_14: Tetratricopeptide repeat	97.26
PF13428	44	TPR_14: Tetratricopeptide repeat	97.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.23
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.16
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.15
KOG1258	577	consensus mRNA processing protein [RNA processing	97.08
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.08
PF13431	34	TPR_17: Tetratricopeptide repeat	97.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.02
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.0
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.98
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.97
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.89
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.88
PF13431	34	TPR_17: Tetratricopeptide repeat	96.77
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.76
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.76
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.66
KOG1258	577	consensus mRNA processing protein [RNA processing	96.61
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.56
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.38
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.38
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.19
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.13
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.06
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.06
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.97
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.92
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.89
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.88
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.87
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.86
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.85
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.85
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.78
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.76
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.71
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.65
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.58
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	95.56
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.45
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	95.45
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.36
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.34
PRK14707	2710	hypothetical protein; Provisional	95.29
PRK14707	2710	hypothetical protein; Provisional	95.17
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.99
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.96
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.95
COG5187	412	RPN7 26S proteasome regulatory complex component,	94.85
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.8
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	94.65
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.57
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.48
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.37
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.28
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.28
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.07
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.01
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.98
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.54
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.49
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.29
PRK10941	269	hypothetical protein; Provisional	93.24
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.2
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.08
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.06
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.9
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.58
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.57
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.54
KOG0687	393	consensus 26S proteasome regulatory complex, subun	92.38
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.32
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.06
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.96
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.89
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	91.61
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.51
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.48
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	91.19
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.16
PRK10941	269	hypothetical protein; Provisional	91.14
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	91.05
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.95
COG3947	361	Response regulator containing CheY-like receiver a	90.76
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	90.59
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	90.45
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.41
KOG2422	665	consensus Uncharacterized conserved protein [Funct	90.4
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	90.16
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.12
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	90.09
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	90.05
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	89.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.33
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.24
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.18
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.7
COG5187	412	RPN7 26S proteasome regulatory complex component,	88.68
KOG2908	380	consensus 26S proteasome regulatory complex, subun	88.56
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.53
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	88.43
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.32
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	88.18
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	88.18
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.17
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	87.6
KOG1310	758	consensus WD40 repeat protein [General function pr	87.31
KOG1310	758	consensus WD40 repeat protein [General function pr	87.04
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	87.03
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	87.01
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	86.89
KOG3364	149	consensus Membrane protein involved in organellar	86.67
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.6
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	86.17
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.08
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	86.04
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	85.89
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.82
COG4976	287	Predicted methyltransferase (contains TPR repeat)	85.43
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.24
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	84.84
KOG2908	380	consensus 26S proteasome regulatory complex, subun	84.51
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	84.42
PF04212	69	MIT: MIT (microtubule interacting and transport) d	83.89
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	83.52
COG1747	711	Uncharacterized N-terminal domain of the transcrip	83.01
PRK09169	2316	hypothetical protein; Validated	82.88
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.76
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	82.54
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	82.28
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	81.78
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	81.74
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	80.88
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	80.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.68
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	80.61
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.57

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-45  Score=363.58  Aligned_cols=374  Identities=21%  Similarity=0.306  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (727)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (727)
                      .+++|.++|.++...|++++|+.+|+.++++.     +    ..+.+|.++|.++...|+.+.|..+|..++++      
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-----p----~fida~inla~al~~~~~~~~a~~~~~~alql------  179 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELK-----P----KFIDAYINLAAALVTQGDLELAVQCFFEALQL------  179 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-----c----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc------
Confidence            34444444555444555555555554444443     1    12233444455555455555555555544444      


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (727)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  423 (727)
                        +|....+...+|.++...|+..+|..+|.+|+...+..        +.+|.+||.++...|+...|+.+|++|+.   
T Consensus       180 --nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvk---  246 (966)
T KOG4626|consen  180 --NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK---  246 (966)
T ss_pred             --CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhc---
Confidence              44444444444444444455555555554444444322        23344444444444555555554444432   


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                         .+|....+|.+||.+|...+.|+.|+.+|.+|+.+        .|..+.++.++|.+|+.+|..+-|+..|++++++
T Consensus       247 ---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~  315 (966)
T KOG4626|consen  247 ---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL  315 (966)
T ss_pred             ---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence               24444444445555554455555555555444444        4444444445555555555555555555544444


Q ss_pred             HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (727)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (727)
                               .|.+..++++||..+...|+..+|..+|.+++.+.+..       +.+.++||.+|..+|.+++|..+|.+
T Consensus       316 ---------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~  379 (966)
T KOG4626|consen  316 ---------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLK  379 (966)
T ss_pred             ---------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHH
Confidence                     33334444445554444455555555555544444333       34444445555555555555555544


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      ++++.        +..+.+.++||.+|.++|++++|+.+|++|+.+        .|..++++.++|..|..+|+...|+.
T Consensus       380 al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q  443 (966)
T KOG4626|consen  380 ALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQ  443 (966)
T ss_pred             HHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHH
Confidence            44442        223444444455555555555555555555444        44444445555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .|.+|+.+        +|..++++.+||.+|...|+..+|+ ..|+++|+++|+
T Consensus       444 ~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPD  488 (966)
T KOG4626|consen  444 CYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPD  488 (966)
T ss_pred             HHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCC
Confidence            55544443        3444445555555555555555554 445555544444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-44  Score=353.47  Aligned_cols=420  Identities=20%  Similarity=0.255  Sum_probs=386.3

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (727)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (727)
                      .....+...+|..++++-.+|+.+-..|+ +++|+.+|+.++++-         |..+++|.++|.++...|+.+.|...
T Consensus       103 a~~~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~~a~~~  172 (966)
T KOG4626|consen  103 AGSLLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLELAVQC  172 (966)
T ss_pred             hhhhhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCcccHHH
Confidence            34455677889999999999999999998 999999999999863         67799999999999999999999999


Q ss_pred             HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS  367 (727)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  367 (727)
                      |..++++.+     .    .+.+...+|..+-..|+..+|..+|.+|++.        .|..+.+|.+||.++..+|+..
T Consensus       173 ~~~alqlnP-----~----l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~  235 (966)
T KOG4626|consen  173 FFEALQLNP-----D----LYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIW  235 (966)
T ss_pred             HHHHHhcCc-----c----hhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHH
Confidence            999999962     1    2335778999999999999999999999999        7999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004848          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR  447 (727)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  447 (727)
                      .|+..|++|+.+.|...        .+|.+||.+|...+.|++|+..|.+|+.      ..|..+.++.++|.+|+.+|.
T Consensus       236 ~aiq~y~eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~iYyeqG~  301 (966)
T KOG4626|consen  236 LAIQHYEEAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACIYYEQGL  301 (966)
T ss_pred             HHHHHHHHhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEEEecccc
Confidence            99999999999998775        4699999999999999999999999975      578889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (727)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (727)
                      .+-|+..|++++++        .|....++.+||..+-..|+..+|..+|.+++.+         .+..+.++++||.+|
T Consensus       302 ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~  364 (966)
T KOG4626|consen  302 LDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIY  364 (966)
T ss_pred             HHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHH
Confidence            99999999999998        8999999999999999999999999999999999         445578999999999


Q ss_pred             HhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004848          528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (727)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  607 (727)
                      ..+|.+++|..+|.++++..+..       +.+..+||.+|..+|++++|+.+|++++.+        .+.++.++.++|
T Consensus       365 ~E~~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmG  429 (966)
T KOG4626|consen  365 REQGKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMG  429 (966)
T ss_pred             HHhccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcc
Confidence            99999999999999999998776       678999999999999999999999999997        466899999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848          608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK  687 (727)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~  687 (727)
                      ..|..+|+.+.|+.+|.+|+.+        +|..++++.+||.+|...|+..+|+..|+.++.+        .|+.++++
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--------kPDfpdA~  493 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--------KPDFPDAY  493 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--------CCCCchhh
Confidence            9999999999999999999999        9999999999999999999999999999999987        68888999


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          688 RRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+|+.++.-..++.+-- +.+.++.++-.+
T Consensus       494 cNllh~lq~vcdw~D~d-~~~~kl~sivrd  522 (966)
T KOG4626|consen  494 CNLLHCLQIVCDWTDYD-KRMKKLVSIVRD  522 (966)
T ss_pred             hHHHHHHHHHhcccchH-HHHHHHHHHHHH
Confidence            99999998888877766 666776666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=3.4e-31  Score=273.64  Aligned_cols=421  Identities=40%  Similarity=0.519  Sum_probs=361.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (727)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (727)
                      .+.....++..++.....+..+.+.+....++++..++....    .....+......++..+.+++|....+.......
T Consensus        84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~  159 (508)
T KOG1840|consen   84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV  159 (508)
T ss_pred             cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence            345566778888888888877888888888888887765311    1112466677777888889999888887765421


Q ss_pred             hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (727)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (727)
                                    ...++..+...-+.+.....+...+.+..+..+..+|....+...++..|..+|+|+.|+..++++
T Consensus       160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A  225 (508)
T KOG1840|consen  160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA  225 (508)
T ss_pred             --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                          111333344443444667777777777777788889999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (727)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (727)
                      +++..+..+                                        -.++.+......+|.+|..++++.+|+..|+
T Consensus       226 l~~l~k~~G----------------------------------------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~  265 (508)
T KOG1840|consen  226 LRILEKTSG----------------------------------------LKHLVVASMLNILALVYRSLGKYDEAVNLYE  265 (508)
T ss_pred             HHHHHHccC----------------------------------------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            988544332                                        1345555666689999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHH
Q 004848          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (727)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (727)
                      +|+.+.+...|+++|..+.++.+||.+|...|+|++|..++++|+++.++. .+..++.+...+..++.++..++++++|
T Consensus       266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            999999999999999999999999999999999999999999999999994 4788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004848          537 IKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (727)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  615 (727)
                      ..+++++++++.+.++... .++.++.+||.+|..+|+|.+|.++|++|+.+.++..+.........+++||..|.+.++
T Consensus       345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            9999999999998888877 899999999999999999999999999999999999888788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (727)
                      +.+|..+|.++..+. +..|+++|+....|.+||.+|..+|++++|+++.++++..++..+|..+|........++....
T Consensus       425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (508)
T KOG1840|consen  425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK  503 (508)
T ss_pred             cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999999998888777776654


Q ss_pred             Hh
Q 004848          696 EA  697 (727)
Q Consensus       696 ~~  697 (727)
                      ..
T Consensus       504 ~~  505 (508)
T KOG1840|consen  504 EA  505 (508)
T ss_pred             Hh
Confidence            43

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=6e-32  Score=301.53  Aligned_cols=421  Identities=17%  Similarity=0.155  Sum_probs=317.6

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (727)
                      .+..+..+|..++..|+ |++|+.+|++|+.+.       |+   ...+.++|.+|..+|++++|+..+++++++.    
T Consensus       126 ~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~-------p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----  190 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK-------PD---PVYYSNRAACHNALGDWEKVVEDTTAALELD----  190 (615)
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-------Cc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence            46678899999999997 999999999999863       22   3468999999999999999999999999885    


Q ss_pred             CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (727)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (727)
                       ++.    ..+++.+|.+|..+|++++|+..|..++...     ..........  +...+ .    ..+...+..++..
T Consensus       191 -p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~--~~~~l-~----~~a~~~~~~~l~~  253 (615)
T TIGR00990       191 -PDY----SKALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQA--VERLL-K----KFAESKAKEILET  253 (615)
T ss_pred             -CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHH--HHHHH-H----HHHHHHHHHHHhc
Confidence             333    3459999999999999999999997765541     0011110000  00000 0    1111111111111


Q ss_pred             HHhcCCC-------------------------CCHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848          380 HKDNGSP-------------------------ASLEEAADRRLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEV  431 (727)
Q Consensus       380 ~~~~~~~-------------------------~~~~~a~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (727)
                      .+.....                         ........+..++..+   ...++|++|+..|++++...   ...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~  330 (615)
T TIGR00990       254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKE  330 (615)
T ss_pred             CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhh
Confidence            1110000                         0000011233334332   23478999999999887532   235778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      +.++..+|.++..+|++++|+..|++++.+        .|....++..+|.++...|++++|+.+|++++++        
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------  394 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------  394 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            889999999999999999999999999998        7888899999999999999999999999999988        


Q ss_pred             ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (727)
                       .|....++..+|.++...|++++|+.+|++++.+.+..       ...+..+|.++..+|++++|+..|++++...   
T Consensus       395 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---  463 (615)
T TIGR00990       395 -NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF---  463 (615)
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence             33446789999999999999999999999999986654       4678899999999999999999999999862   


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                           +....++..+|.++...|++++|+..|++++.+...... .+......+...+.++...|++++|+.++++++.+
T Consensus       464 -----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       464 -----PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKALII  537 (615)
T ss_pred             -----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                 224578899999999999999999999999998222100 01111222222333445579999999999999986


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          672 REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       672 ~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                              +|+...++..||.++..+|++++|+ .+|++++++.++
T Consensus       538 --------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~  574 (615)
T TIGR00990       538 --------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART  574 (615)
T ss_pred             --------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence                    5777788999999999999999999 999999998774

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-30  Score=309.56  Aligned_cols=421  Identities=18%  Similarity=0.177  Sum_probs=262.4

Q ss_pred             cccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHH
Q 004848          205 HKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEA  284 (727)
Q Consensus       205 ~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  284 (727)
                      .+...+.......|.....+..+|..+...|+ +++|+.+|++++...         |....++..+|.++...|++++|
T Consensus       449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A  518 (899)
T TIGR02917       449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE---------PDFFPAAANLARIDIQEGNPDDA  518 (899)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCCCHHHH
Confidence            33333334444455566666666666666665 667777666666542         22344566666666666777777


Q ss_pred             HHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004848          285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL  364 (727)
Q Consensus       285 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  364 (727)
                      +..|++++...     +.+    ..++..++.++...|++++|+.+|++++..        +|.....+..++.++...|
T Consensus       519 ~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~  581 (899)
T TIGR02917       519 IQRFEKVLTID-----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYLGKG  581 (899)
T ss_pred             HHHHHHHHHhC-----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHHCC
Confidence            77666666543     222    223556666666666666666666666655        4455556666666666666


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004848          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (727)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (727)
                      ++++|+.++++++...+..        ...+..+|.++...|++++|+..|++++..      .+....++..+|.++..
T Consensus       582 ~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~  647 (899)
T TIGR02917       582 QLKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAV  647 (899)
T ss_pred             CHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHH
Confidence            6666666666665543322        234666677777777777777777666542      23334556666777777


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 004848          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS  524 (727)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  524 (727)
                      .|++++|+.+|++++..        .|....++..++.++...|++++|+.+++.+....         +.....+..+|
T Consensus       648 ~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~  710 (899)
T TIGR02917       648 MKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALGFELEG  710 (899)
T ss_pred             cCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHHHHHHH
Confidence            77777777777766665        45555566666666666666666666666555441         22234566677


Q ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 004848          525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN  604 (727)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  604 (727)
                      .++...|++++|+..|++++...+..        ..+..++.++...|++++|...+++++...        +....++.
T Consensus       711 ~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~  774 (899)
T TIGR02917       711 DLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PNDAVLRT  774 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence            77777777777777777776654322        344556677777777777777776666531        11245666


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD  684 (727)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~  684 (727)
                      .+|.++...|++++|+.+|+++++.        +|....++..++.++...|+ .+|+.++++++.+        .|+..
T Consensus       775 ~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~  837 (899)
T TIGR02917       775 ALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIP  837 (899)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCc
Confidence            7777777777777777777777766        56666667777777777777 6677777777654        34445


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+..+|.++...|++++|. ..|+++++.+|.
T Consensus       838 ~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~~~  869 (899)
T TIGR02917       838 AILDTLGWLLVEKGEADRAL-PLLRKAVNIAPE  869 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            55666777777777777777 777777776664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.4e-30  Score=308.69  Aligned_cols=429  Identities=19%  Similarity=0.219  Sum_probs=371.7

Q ss_pred             CCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848          193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA  272 (727)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la  272 (727)
                      .+..+...+++..+.+.+.+....+|.....++.+|..+...|+ +++|+.+|++++...         |....++..++
T Consensus       471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~---------~~~~~~~~~l~  540 (899)
T TIGR02917       471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTID---------PKNLRAILALA  540 (899)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------cCcHHHHHHHH
Confidence            34455666777777777777777889999999999999999997 999999999998753         33466788999


Q ss_pred             HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004848          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (727)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (727)
                      .++...|++++|+.+|++++...     +..    ...+..++.+|...|++++|+..+++++..        .|....+
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~  603 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELN-----PQE----IEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEA  603 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-----ccc----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHH
Confidence            99999999999999999998764     222    234788999999999999999999999877        5777789


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004848          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA  432 (727)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  432 (727)
                      +..+|.++...|++++|+.+|++++...+...        .++..+|.++...|++++|+.+|++++..      .|...
T Consensus       604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~  669 (899)
T TIGR02917       604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA--------LALLLLADAYAVMKNYAKAITSLKRALEL------KPDNT  669 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Confidence            99999999999999999999999998765432        46889999999999999999999998753      45556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      .++..++.++...|++++|+..++.+...        .|.....+..+|.++...|++++|+..|++++.....      
T Consensus       670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------  735 (899)
T TIGR02917       670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------  735 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------
Confidence            78899999999999999999999988776        5667788899999999999999999999999988321      


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      .    ..+..++.++...|++++|+..+++++...+..       ..++..+|.+|...|++++|+.+|+++++..    
T Consensus       736 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----  800 (899)
T TIGR02917       736 S----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKKA----  800 (899)
T ss_pred             c----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence            1    467789999999999999999999999875443       4678899999999999999999999999862    


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                          +....++..+|.++...|+ .+|+.++++++.+        .|+...++..+|.++...|++++|+.+|+++++. 
T Consensus       801 ----p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-  866 (899)
T TIGR02917       801 ----PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-  866 (899)
T ss_pred             ----CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence                2245788999999999999 8899999999998        6777778899999999999999999999999986 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       673 ~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                             .|....++..++.++.+.|++++|. +.++++++
T Consensus       867 -------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  899 (899)
T TIGR02917       867 -------APEAAAIRYHLALALLATGRKAEAR-KELDKLLN  899 (899)
T ss_pred             -------CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHhC
Confidence                   5667889999999999999999999 99998863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=8.4e-30  Score=302.35  Aligned_cols=454  Identities=15%  Similarity=0.059  Sum_probs=344.7

Q ss_pred             CCccccccccccccccccccCCCCCChHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848          194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLL-KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA  272 (727)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~-~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la  272 (727)
                      +..+...+++.+|++.+..+...+|.....-. .........|+ +++|+..++++++..         |....++..+|
T Consensus       119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~---------P~~~~~~~~LA  188 (1157)
T PRK11447        119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY---------PGNTGLRNTLA  188 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC---------CCCHHHHHHHH
Confidence            44566778888888777777777776653222 22222334576 999999999998864         44466788999


Q ss_pred             HHHHHcCChhHHHHHHHHhcccchhc-------------cC----------------ccchH-HHH-H------------
Q 004848          273 AIYCSLGQYNEAIPVLEQSIEIPVIE-------------EG----------------QEHAL-AKF-A------------  309 (727)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~----------------~~~~~-~~~-~------------  309 (727)
                      .+++..|++++|+..|++++......             ..                +.... ... .            
T Consensus       189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp  268 (1157)
T PRK11447        189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP  268 (1157)
T ss_pred             HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence            99999999999999999986542100             00                00000 000 0            


Q ss_pred             --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004848          310 --GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (727)
Q Consensus       310 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (727)
                        ....+|.++...|++++|+..|+++++.        +|....++..+|.++...|++++|+.+|+++++..+......
T Consensus       269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~  340 (1157)
T PRK11447        269 AFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD  340 (1157)
T ss_pred             chHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence              0124488899999999999999999998        788899999999999999999999999999999877654221


Q ss_pred             CHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          388 SLE------EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (727)
Q Consensus       388 ~~~------~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (727)
                      ...      .......+|.++...|++++|+.+|++++.+      .|....++..+|.++...|++++|+.+|++++++
T Consensus       341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM  414 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            100      1122345688899999999999999999864      4455678889999999999999999999999976


Q ss_pred             HHHhcCCCChhHHHH------------------------------------------HHHHHHHHHHcCChHHHHHHHHH
Q 004848          462 FKTNKGENHPAVASV------------------------------------------FVRLADMYNRTGKLRESKSYCEN  499 (727)
Q Consensus       462 ~~~~~~~~~~~~~~~------------------------------------------~~~la~~~~~~g~~~~A~~~~~~  499 (727)
                              .|....+                                          +..+|.++...|++++|+.+|++
T Consensus       415 --------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~  486 (1157)
T PRK11447        415 --------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ  486 (1157)
T ss_pred             --------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                    2322222                                          33456667788999999999999


Q ss_pred             HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (727)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (727)
                      ++++         .|....++..+|.+|...|++++|+..+++++...+..       ...++.++..+...+++++|+.
T Consensus       487 Al~~---------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------~~~~~a~al~l~~~~~~~~Al~  550 (1157)
T PRK11447        487 RLAL---------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-------PEQVYAYGLYLSGSDRDRAALA  550 (1157)
T ss_pred             HHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHHHH
Confidence            9988         33446678899999999999999999999998765543       2445556666666677777766


Q ss_pred             HHHHHH-------------------------------------HHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHH
Q 004848          580 SFKNAI-------------------------------------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL  622 (727)
Q Consensus       580 ~~~~al-------------------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  622 (727)
                      +++++.                                     .+++.    . +.....+..+|.++...|++++|+.+
T Consensus       551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~-p~~~~~~~~La~~~~~~g~~~~A~~~  625 (1157)
T PRK11447        551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----Q-PPSTRIDLTLADWAQQRGDYAAARAA  625 (1157)
T ss_pred             HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----C-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence            655421                                     11111    1 11235678899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhH
Q 004848          623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (727)
Q Consensus       623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (727)
                      |++++..        +|+...++..++.+|...|++++|+..|++++..        .|+...++..+|.++...|++++
T Consensus       626 y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~e  689 (1157)
T PRK11447        626 YQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAA  689 (1157)
T ss_pred             HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHH
Confidence            9999998        8888899999999999999999999999988754        56777888899999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 004848          703 RKAQSLETLLDANSR  717 (727)
Q Consensus       703 A~~~~l~~al~~~p~  717 (727)
                      |. ..|++++...|.
T Consensus       690 A~-~~~~~al~~~~~  703 (1157)
T PRK11447        690 AQ-RTFNRLIPQAKS  703 (1157)
T ss_pred             HH-HHHHHHhhhCcc
Confidence            99 999999988764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.4e-29  Score=298.41  Aligned_cols=448  Identities=13%  Similarity=0.111  Sum_probs=343.6

Q ss_pred             ccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----------HHhcC-----------
Q 004848          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF-----------EIGAN-----------  257 (727)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-----------~~~~~-----------  257 (727)
                      .++..++++.+..+...+|+...+++.+|..++..|+ +++|+..+++++...           +.+..           
T Consensus       160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l  238 (1157)
T PRK11447        160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL  238 (1157)
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence            4566677788888999999999999999999999997 999999999875421           11000           


Q ss_pred             -----CCCC-HHHHH-----------------HHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHH
Q 004848          258 -----GKPS-LELVM-----------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL  314 (727)
Q Consensus       258 -----~~~~-~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  314 (727)
                           ..+. +....                 ....+|.++...|++++|+..|++++...     ++++    .++..+
T Consensus       239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-----P~~~----~a~~~L  309 (1157)
T PRK11447        239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-----PKDS----EALGAL  309 (1157)
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHH
Confidence                 0000 00000                 01234888999999999999999999885     4443    358999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848          315 GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (727)
Q Consensus       315 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (727)
                      |.+|..+|++++|+.+|+++++..+.     .+.           .......+|.++...|++++|+.+|++++.+.|..
T Consensus       310 g~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~  384 (1157)
T PRK11447        310 GQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD  384 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999987321     111           11233456888999999999999999999987644


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------Ch----------------------
Q 004848          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DA----------------------  429 (727)
Q Consensus       384 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~----------------------  429 (727)
                              ..++..+|.++...|++++|+.+|++++.+......            .+                      
T Consensus       385 --------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~  456 (1157)
T PRK11447        385 --------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE  456 (1157)
T ss_pred             --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence                    256889999999999999999999999754211100            00                      


Q ss_pred             --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          430 --EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       430 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                        .....+..+|.++...|++++|+..|++++++        .|....+++.+|.+|...|++++|+..+++++...   
T Consensus       457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---  525 (1157)
T PRK11447        457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---  525 (1157)
T ss_pred             HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence              00122345677888899999999999999998        78888999999999999999999999999998762   


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------------------------------------HHHHhC
Q 004848          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL-------------------------------------KIYNDA  550 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~~  550 (727)
                            |.....++.++.++...+++++|+.+++++.                                     .+....
T Consensus       526 ------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~  599 (1157)
T PRK11447        526 ------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ  599 (1157)
T ss_pred             ------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence                  2223445556666666666666666655421                                     111111


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                      +    ....++..+|.++...|++++|+.+|++++...        +....++..++.++...|++++|+.+|++++.. 
T Consensus       600 p----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-  666 (1157)
T PRK11447        600 P----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-  666 (1157)
T ss_pred             C----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence            1    123456789999999999999999999999862        224578999999999999999999999998877 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHhCChhHHHHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP---DVDDEKRRLAELLKEAGRVRSRKAQS  707 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p---~~~~~~~~La~~~~~~g~~~~A~~~~  707 (727)
                             .|+...++..+|.++..+|++++|+.+|++++...     +.+|   ..+..+..+|.++...|++++|+ ..
T Consensus       667 -------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~  733 (1157)
T PRK11447        667 -------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQPQQAL-ET  733 (1157)
T ss_pred             -------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HH
Confidence                   77778889999999999999999999999998753     1222   24567778899999999999999 99


Q ss_pred             HHHHHH
Q 004848          708 LETLLD  713 (727)
Q Consensus       708 l~~al~  713 (727)
                      |++++.
T Consensus       734 y~~Al~  739 (1157)
T PRK11447        734 YKDAMV  739 (1157)
T ss_pred             HHHHHh
Confidence            999986

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.98  E-value=2.8e-29  Score=280.14  Aligned_cols=414  Identities=18%  Similarity=0.135  Sum_probs=314.5

Q ss_pred             ccCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          191 NAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (727)
Q Consensus       191 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  270 (727)
                      ...+..+...+++..|+..+..+....|+ ...+..+|.++...|+ +++|++.+.+|+++.         |+...++..
T Consensus       131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~---------p~~~~a~~~  199 (615)
T TIGR00990       131 KEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGD-WEKVVEDTTAALELD---------PDYSKALNR  199 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC---------CCCHHHHHH
Confidence            34555667778899999888888888886 6789999999999998 999999999999862         456788999


Q ss_pred             HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----------
Q 004848          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK-----------  339 (727)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----------  339 (727)
                      +|.+|..+|++++|+..|..++.+..    ...... ...+.   ..+.     ..+...+..+++...           
T Consensus       200 ~a~a~~~lg~~~eA~~~~~~~~~~~~----~~~~~~-~~~~~---~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~  266 (615)
T TIGR00990       200 RANAYDGLGKYADALLDLTASCIIDG----FRNEQS-AQAVE---RLLK-----KFAESKAKEILETKPENLPSVTFVGN  266 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC----CccHHH-HHHHH---HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence            99999999999999999987765431    111100 00000   0000     011111111111000           


Q ss_pred             --HHh------------CCCCchHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004848          340 --QVL------------GETDPRVGETCRYLAEAHV---QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC  402 (727)
Q Consensus       340 --~~~------------~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~  402 (727)
                        ..+            ...++.....+..++..+.   ..++|++|+.+|++++....     ..+..+.++..+|.++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~  341 (615)
T TIGR00990       267 YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFK  341 (615)
T ss_pred             HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHH
Confidence              000            0002223333444444332   34689999999999997651     1233457799999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848          403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD  482 (727)
Q Consensus       403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  482 (727)
                      ...|++++|+..|++++.+      .|.....+..+|.++...|++++|+.+|++++++        +|....++..+|.
T Consensus       342 ~~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~  407 (615)
T TIGR00990       342 CLKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQ  407 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            9999999999999999863      5667788999999999999999999999999988        6788899999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004848          483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (727)
Q Consensus       483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (727)
                      ++...|++++|+.+|++++.+         .|.....+..+|.++..+|++++|+..|++++...+..       ..++.
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~  471 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYN  471 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHH
Confidence            999999999999999999998         34456778999999999999999999999999886654       46788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (727)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  642 (727)
                      .+|.++..+|++++|+.+|++++.+.+...... ......+...+.++...|++++|+.++++++.+        +|+..
T Consensus       472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~  542 (615)
T TIGR00990       472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECD  542 (615)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcH
Confidence            999999999999999999999998754322111 111222233334444579999999999999998        78888


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      .++..+|.++..+|++++|+.+|++++++.
T Consensus       543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       543 IAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999885

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.5e-28  Score=258.76  Aligned_cols=452  Identities=17%  Similarity=0.160  Sum_probs=362.9

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (727)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (727)
                      ..+..+-..+|.++.++..++..++..|+ |+.+..++..|+...      ...+..+..++.+|.+|..+|+|++|..+
T Consensus       257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y  329 (1018)
T KOG2002|consen  257 QLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKAFKY  329 (1018)
T ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            45556667788999999999999999997 999999999998763      23356788899999999999999999999


Q ss_pred             HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---
Q 004848          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---  364 (727)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---  364 (727)
                      |.+++...     +++   .+-.++.||.+|...|+++.|+.+|++++..        .|+...+...||.+|...+   
T Consensus       330 Y~~s~k~~-----~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~  393 (1018)
T KOG2002|consen  330 YMESLKAD-----NDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQ  393 (1018)
T ss_pred             HHHHHccC-----CCC---ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhh
Confidence            99999885     222   1223889999999999999999999999998        6889999999999998876   


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004848          365 -QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL  443 (727)
Q Consensus       365 -~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  443 (727)
                       ..+.|..++.+++...+..        ..+|..++.++....-+.. +.+|..|+.++...... .-...++++|..++
T Consensus       394 ~~~d~a~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf  463 (1018)
T KOG2002|consen  394 EKRDKASNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHF  463 (1018)
T ss_pred             HHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHH
Confidence             5678888888888877544        3679999998877665555 99999999777766554 55678999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004848          444 SLSRYDEAGFAYQKALTAFKTNKGENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (727)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (727)
                      ..|++.+|..+|..|+..+......+.  .......+++|.++...++++.|...|...+..         +|....++.
T Consensus       464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~yl  534 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDAYL  534 (1018)
T ss_pred             HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHHHH
Confidence            999999999999999988553332222  233557899999999999999999999999888         677888888


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-----------------------------cHHHHHHHHHHHHHHc-
Q 004848          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----------------------------TVAGIEAQMGVMYYML-  571 (727)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~~la~~~~~~-  571 (727)
                      .+|......+...+|..++..++.+....+....                             .-+.++..||.+|+.. 
T Consensus       535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l  614 (1018)
T KOG2002|consen  535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL  614 (1018)
T ss_pred             HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence            8887777888888899888888776544321100                             1123445667766542 


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004848          572 ----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (727)
Q Consensus       572 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (727)
                          .+.+.+...+.+|++++.+....+| ....+-+.+|.++...|++.+|+..|.++.+..        .+...+|.+
T Consensus       615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--------~~~~dv~lN  685 (1018)
T KOG2002|consen  615 HNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--------SDFEDVWLN  685 (1018)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH--------hhCCceeee
Confidence                2345566666677766665544443 356788999999999999999999999998873        344558999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ||.||..+|+|..|++.|+.++..+.      ..+...++..||+++.+.|++.+|. +.+..|+.+.|.
T Consensus       686 lah~~~e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~  748 (1018)
T KOG2002|consen  686 LAHCYVEQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPS  748 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCc
Confidence            99999999999999999999998752      2345678889999999999999999 999999999887

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.97  E-value=4.5e-27  Score=243.18  Aligned_cols=291  Identities=22%  Similarity=0.302  Sum_probs=272.6

Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      .....|....+...++..|..+|+|++|+..++.++++..+..|.+++........+|.+|..++++.+|+.+|++|+.+
T Consensus       191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34457888888888999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (727)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (727)
                      .+..+ |.+++..+.++.+||.+|...|++++|..++++|+++....++..+ .++..+..++.++..++++++|..+++
T Consensus       271 ~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q  349 (508)
T KOG1840|consen  271 REEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ  349 (508)
T ss_pred             HHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            99876 7889999999999999999999999999999999999998666554 677788999999999999999999999


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004848          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (727)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (727)
                      ++++++....+..++..+..+.+||.+|..+|++++|.++|++|+.+.++..+..++.....+.+||..|.+.+++.+|.
T Consensus       350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            99999998877777788999999999999999999999999999999999998888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..|.++..+. ..+|+++|+....+.+|+.+|..+|++++|. ++.+.++....+
T Consensus       430 ~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~~~~~~  482 (508)
T KOG1840|consen  430 QLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVLNAREQ  482 (508)
T ss_pred             HHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHH
Confidence            9999999999 9999999999999999999999999999999 999999876655

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.1e-26  Score=244.75  Aligned_cols=433  Identities=15%  Similarity=0.182  Sum_probs=358.6

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (727)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (727)
                      ..|.-+...+|+++.+|+..|...+..++ |..|+.+|.+|+.+.+...        +.....+|.|++.+|+.+.|+..
T Consensus       151 a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~--------aD~rIgig~Cf~kl~~~~~a~~a  221 (1018)
T KOG2002|consen  151 AQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK--------ADVRIGIGHCFWKLGMSEKALLA  221 (1018)
T ss_pred             HHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC--------CCccchhhhHHHhccchhhHHHH
Confidence            56677788899999999999999999997 9999999999998865542        22245678999999999999999


Q ss_pred             HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc
Q 004848          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL  364 (727)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  364 (727)
                      |++++++.     |    ..+.++..||.+-....+   +..++..+.++...        ++..+.++..|+..++..|
T Consensus       222 ~~ralqLd-----p----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~  284 (1018)
T KOG2002|consen  222 FERALQLD-----P----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKK  284 (1018)
T ss_pred             HHHHHhcC-----h----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcc
Confidence            99999996     2    345567777777665544   55666666666666        6788899999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004848          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (727)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (727)
                      +|..+..+...++....     .....+..++.+|.+|..+|+|++|..+|.+++..     ++......++.+|++|..
T Consensus       285 dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~GlgQm~i~  354 (1018)
T KOG2002|consen  285 DYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVGLGQMYIK  354 (1018)
T ss_pred             cHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccchhHHHHH
Confidence            99999999999987652     22445678999999999999999999999988753     222246678899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG----KLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (727)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (727)
                      .|+++.|..+|++++..        .|....+...||.+|...+    ..+.|..++.++++.         .+....+|
T Consensus       355 ~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~  417 (1018)
T KOG2002|consen  355 RGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAW  417 (1018)
T ss_pred             hchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHH
Confidence            99999999999999998        7889999999999999886    567777777777776         34567899


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc--hh
Q 004848          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS--AF  598 (727)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~  598 (727)
                      ..++.+|....-+.. +.+|..|+.+.......  .-..+++++|..++..|++.+|...|.+|+..+....+.+.  ..
T Consensus       418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~  494 (1018)
T KOG2002|consen  418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST  494 (1018)
T ss_pred             HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence            999999877655554 99999999888776333  23578999999999999999999999999998553322221  22


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .....+++|.++...++++.|.+.|...+..        ||..+.+|..||......++..+|..++..++.+       
T Consensus       495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-------  559 (1018)
T KOG2002|consen  495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-------  559 (1018)
T ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-------
Confidence            3456889999999999999999999999998        9999999999998888899999999999999986       


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                       +..++.++..+|.++.....+..|. +-|+.++.
T Consensus       560 -d~~np~arsl~G~~~l~k~~~~~a~-k~f~~i~~  592 (1018)
T KOG2002|consen  560 -DSSNPNARSLLGNLHLKKSEWKPAK-KKFETILK  592 (1018)
T ss_pred             -ccCCcHHHHHHHHHHHhhhhhcccc-cHHHHHHh
Confidence             4556678888999999999999998 87776654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.6e-26  Score=223.22  Aligned_cols=436  Identities=13%  Similarity=0.099  Sum_probs=311.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      ..+..+-..|+.+++.|+ |++||+||.+|+.+.         |+....|.+++.||...|+|++.++...+++++.   
T Consensus       113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---  179 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---  179 (606)
T ss_pred             HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence            567788999999999997 999999999999985         2235569999999999999999999999999996   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHhcCH---------HH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-DPRVGETCRYLAEAHVQALQF---------SE  368 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~---------~~  368 (727)
                        ++    ...++++.+.++..+|++.+|+.-..-. -+....-+.. .|..-..+...|.--...+--         ..
T Consensus       180 --P~----Y~KAl~RRA~A~E~lg~~~eal~D~tv~-ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~  252 (606)
T KOG0547|consen  180 --PD----YVKALLRRASAHEQLGKFDEALFDVTVL-CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT  252 (606)
T ss_pred             --cH----HHHHHHHHHHHHHhhccHHHHHHhhhHH-HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH
Confidence              33    4456999999999999999998765432 2211100000 011112222222211110000         00


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHH
Q 004848          369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIANDQ-------DAEVASVDCSI  438 (727)
Q Consensus       369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~l  438 (727)
                      -+..|-..+.-.+..........+.....-+.-+...+   .|..|...+.+..........       ....+.++...
T Consensus       253 fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~  332 (606)
T KOG0547|consen  253 FIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR  332 (606)
T ss_pred             HHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence            01111111110000000000000111111111112222   577777777666433222111       13457788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      |..++..|++-.|...++.++.+        +|.....|..+|.+|....+.++-...|.+|..+         +|..+.
T Consensus       333 gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~d  395 (606)
T KOG0547|consen  333 GTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPD  395 (606)
T ss_pred             hhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCc
Confidence            99999999999999999999998        7777777999999999999999999999999999         455577


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (727)
                      +|+..|++++-++++++|+.-|++++.+.+..       +..+..++.+.+++++++++...|+.+...++        .
T Consensus       396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP--------~  460 (606)
T KOG0547|consen  396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFP--------N  460 (606)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            89999999999999999999999999998776       57788999999999999999999999988743        3


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGRLDDAIEILEFVVGIREEKLG  677 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~g  677 (727)
                      ...++...|.++..++++++|++.|..|+++-.....- +. .+..+.+-|.+ +.-.+++..|+.++.+|+++      
T Consensus       461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~------  532 (606)
T KOG0547|consen  461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL------  532 (606)
T ss_pred             CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc------
Confidence            46788999999999999999999999999983221110 00 22222222222 22348999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       678 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                        +|....++..||.+...+|+.++|+ +.|++++.+...
T Consensus       533 --Dpkce~A~~tlaq~~lQ~~~i~eAi-elFEksa~lArt  569 (606)
T KOG0547|consen  533 --DPKCEQAYETLAQFELQRGKIDEAI-ELFEKSAQLART  569 (606)
T ss_pred             --CchHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHh
Confidence              8999999999999999999999999 999998876543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=1.4e-25  Score=249.11  Aligned_cols=362  Identities=13%  Similarity=0.026  Sum_probs=291.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (727)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (727)
                      +...+..+...|++++|+..++.++...     +.++.    +++.+|.+....|++++|+..|++++..        +|
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P  107 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAV--------NV  107 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence            4556778889999999999999999875     55543    4888999999999999999999999999        78


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (727)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (727)
                      ....++..+|.++...|++++|+..|++++.+.|...        .++..++.++...|++++|+..+.+++..      
T Consensus       108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--------~a~~~la~~l~~~g~~~eA~~~~~~~~~~------  173 (656)
T PRK15174        108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--------QIFALHLRTLVLMDKELQAISLARTQAQE------  173 (656)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence            8999999999999999999999999999999876543        56888999999999999999999866542      


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      .|.....+..++ .+...|++++|+..+++++...       .+........++.++...|++++|+..|++++..    
T Consensus       174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~----  241 (656)
T PRK15174        174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR----  241 (656)
T ss_pred             CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence            222233444443 4788999999999999887751       1222334456788899999999999999999987    


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhcccHHH----HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          508 VPGVPPEEIASGLTDVSSIYESMNELEQ----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (727)
                           .|....++..+|.++...|++++    |+..|++++.+.+..       ..++..+|.++...|++++|+.++++
T Consensus       242 -----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~  309 (656)
T PRK15174        242 -----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ  309 (656)
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                 33446788899999999999986    899999999887654       57888999999999999999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      ++.+.        +....++..+|.++...|++++|+..|++++..        +|.....+..+|.++...|++++|+.
T Consensus       310 al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        310 SLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             HHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence            99862        224567888999999999999999999999987        77777677778999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHH
Q 004848          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR  703 (727)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A  703 (727)
                      .|+++++......   .+...++...+...+...+...+.
T Consensus       374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~  410 (656)
T PRK15174        374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER  410 (656)
T ss_pred             HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence            9999998743322   122334555555555555554433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.96  E-value=1.8e-25  Score=253.76  Aligned_cols=432  Identities=13%  Similarity=0.035  Sum_probs=331.3

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcc
Q 004848          214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (727)
Q Consensus       214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  293 (727)
                      ...+|.....+.....+....|+ +++|++.|.++...-         +..+.++..+|.++...|++++|+.+|++++.
T Consensus         8 ~~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~---------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~   77 (765)
T PRK10049          8 ALKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHM---------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS   77 (765)
T ss_pred             hhccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34456666777777888888997 899998888887531         33466789999999999999999999999998


Q ss_pred             cchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004848          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC  373 (727)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  373 (727)
                      +.     +..+.    ++..+|.++...|++++|+..++++++.        .|.... +..+|.++...|++++|+..+
T Consensus        78 ~~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l  139 (765)
T PRK10049         78 LE-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAM  139 (765)
T ss_pred             hC-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence            85     44433    3778999999999999999999999999        688888 999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHHHH-----
Q 004848          374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV-----ASVDCSIGDTYL-----  443 (727)
Q Consensus       374 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~la~~~~-----  443 (727)
                      ++++.+.|...        .++..++.++...+..+.|+..++++..       .|..     ......+..++.     
T Consensus       140 ~~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        140 TQALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhcccccC
Confidence            99999987653        4577889999999999999998876542       1111     111122222222     


Q ss_pred             HcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848          444 SLSRY---DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (727)
Q Consensus       444 ~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (727)
                      ..+++   ++|+..++.++..+.... ...+....+.......+...|++++|+..|+++++.      +...|..+.  
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~------~~~~P~~a~--  275 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAE------GQIIPPWAQ--  275 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCCCHHHH--
Confidence            22345   778888888776643211 112333444444233446779999999999998776      212233333  


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------CCC
Q 004848          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI------GER  594 (727)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~  594 (727)
                      ..+|.+|..+|++++|+.+|++++...+..   ..........++.++...|++++|+.+++++....+..      ...
T Consensus       276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~  352 (765)
T PRK10049        276 RWVASAYLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS  352 (765)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence            336889999999999999999988643221   11112345667778899999999999999988753210      000


Q ss_pred             C-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          595 K-SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       595 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      . ......++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++.+  
T Consensus       353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--  422 (765)
T PRK10049        353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--  422 (765)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Confidence            1 1123457788999999999999999999999998        8888899999999999999999999999999987  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                            +|+...+++.+|.++...|++++|. ..++++++..|+
T Consensus       423 ------~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd  459 (765)
T PRK10049        423 ------EPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQ  459 (765)
T ss_pred             ------CCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence                  6888889999999999999999999 999999999987

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=1.4e-25  Score=249.12  Aligned_cols=336  Identities=13%  Similarity=0.087  Sum_probs=290.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004848          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (727)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (727)
                      ....+..+...|++++|+..++..+..        .|....+++.+|.+....|++++|+..|++++...|...      
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------  110 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------  110 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------
Confidence            445677788999999999999999998        788899999999999999999999999999999988764      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (727)
Q Consensus       391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (727)
                        .++..+|.++...|++++|+..|++++.+      .|....++..++.++...|++++|+..+++++..        .
T Consensus       111 --~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~  174 (656)
T PRK15174        111 --EDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------V  174 (656)
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------C
Confidence              46899999999999999999999999863      4566778899999999999999999999988776        4


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      |.....+..++ .+...|++++|+..+++++.....        ........++.++...|++++|+..|++++...+..
T Consensus       175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~--------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~  245 (656)
T PRK15174        175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL--------ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG  245 (656)
T ss_pred             CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            55555665554 478899999999999998776211        112234567888999999999999999999875443


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSD----SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                             ..++..+|.+|...|++++    |+..|++++.+.        +....++..+|.++...|++++|+.+++++
T Consensus       246 -------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        246 -------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             -------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                   5678899999999999986    799999998862        234678999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHH
Q 004848          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ  706 (727)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~  706 (727)
                      +.+        +|+...++..+|.+|...|++++|+..|++++..        +|.....+..+|.++...|++++|+ .
T Consensus       311 l~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~  373 (656)
T PRK15174        311 LAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-S  373 (656)
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-H
Confidence            998        8888889999999999999999999999999975        5776667777899999999999999 9


Q ss_pred             HHHHHHHHhhh
Q 004848          707 SLETLLDANSR  717 (727)
Q Consensus       707 ~l~~al~~~p~  717 (727)
                      .|+++++.+|.
T Consensus       374 ~l~~al~~~P~  384 (656)
T PRK15174        374 VFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHhChh
Confidence            99999999998

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=4.1e-24  Score=242.06  Aligned_cols=459  Identities=13%  Similarity=0.013  Sum_probs=334.5

Q ss_pred             cCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (727)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (727)
                      ..+......|++..++..+..+...+|+...+++.++..+...|+ +++|+.+++++++.-         |.....+..+
T Consensus        49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ld---------P~n~~~~~~L  118 (987)
T PRK09782         49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRH---------PGDARLERSL  118 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------cccHHHHHHH
Confidence            344455666888888899999999999999999999999999998 999999999998862         3334444445


Q ss_pred             HHHHHHcCChhHHHHHHHHhcccchhccCccchHH-------------------------------HHHHHHHHHHHHHH
Q 004848          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-------------------------------KFAGHMQLGDTYAM  320 (727)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~  320 (727)
                      +.+    +++++|+.+|++++...+..........                               .....+.++.+|..
T Consensus       119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~  194 (987)
T PRK09782        119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY  194 (987)
T ss_pred             HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence            444    8899999999988887643211110000                               01124445889999


Q ss_pred             hCCHHHHHHHHHHHHHHH--------------HHH---------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004848          321 LGQLENSLMCYTTGLEVQ--------------KQV---------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (727)
Q Consensus       321 ~g~~~~A~~~~~~al~~~--------------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (727)
                      +|+|++|+..+.++++..              ...         ..+.-.....++..++..|...|+.++|...+++.-
T Consensus       195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~  274 (987)
T PRK09782        195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK  274 (987)
T ss_pred             HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            999999999998876651              000         000001233445567777788888888887777654


Q ss_pred             HHHHhcCCCCC---------------------------------------------------------------------
Q 004848          378 DIHKDNGSPAS---------------------------------------------------------------------  388 (727)
Q Consensus       378 ~~~~~~~~~~~---------------------------------------------------------------------  388 (727)
                      ...+.......                                                                     
T Consensus       275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  354 (987)
T PRK09782        275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA  354 (987)
T ss_pred             ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence            44322111000                                                                     


Q ss_pred             ------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HH-------Hh---------
Q 004848          389 ------------------LEEAADRRLMGLICETKGDHEAALEHLVLASM----------TM-------IA---------  424 (727)
Q Consensus       389 ------------------~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~----------~~-------~~---------  424 (727)
                                        +.....+..++......|++++|...|+++..          +.       ..         
T Consensus       355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence                              00011222234445566778888877776633          11       00         


Q ss_pred             ---------------------------------CCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          425 ---------------------------------NDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (727)
Q Consensus       425 ---------------------------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (727)
                                                       .+..|.  ...+++++|.++.. +++.+|+..+.+++..        
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------  505 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------  505 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence                                             001122  55677888888877 7888899988888876        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .|.. .....+|.++...|++++|+..|++++...         +. ...+..+|.++...|++++|+.+|++++...+.
T Consensus       506 ~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~---------p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~  574 (987)
T PRK09782        506 QPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHD---------MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG  574 (987)
T ss_pred             CCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccC---------CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence            4543 336667777789999999999999875441         11 123678899999999999999999999876432


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      .       ...+..++......|++++|+..|++++++.        +. ..++.++|.++.+.|++++|+.+|++++.+
T Consensus       575 ~-------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l  638 (987)
T PRK09782        575 D-------NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL  638 (987)
T ss_pred             c-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            2       2344455666667799999999999999862        22 568899999999999999999999999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE  709 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  709 (727)
                              +|+...++.++|.++...|++++|+..|++++++        +|+...+++++|.++...|++++|. ..|+
T Consensus       639 --------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~  701 (987)
T PRK09782        639 --------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYAR  701 (987)
T ss_pred             --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence                    8999999999999999999999999999999987        6888999999999999999999999 9999


Q ss_pred             HHHHHhhh
Q 004848          710 TLLDANSR  717 (727)
Q Consensus       710 ~al~~~p~  717 (727)
                      ++++++|+
T Consensus       702 ~Al~l~P~  709 (987)
T PRK09782        702 LVIDDIDN  709 (987)
T ss_pred             HHHhcCCC
Confidence            99999997

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.94  E-value=8.8e-24  Score=240.04  Aligned_cols=414  Identities=13%  Similarity=-0.015  Sum_probs=314.3

Q ss_pred             ccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004848          198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS  277 (727)
Q Consensus       198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~  277 (727)
                      .-.|+..++++.+......+|..+.++..+|..+...|+ +++|+.+|++++...         |....++..++.++..
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~   95 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE---------PQNDDYQRGLILTLAD   95 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence            334555566666677776788889999999999999997 999999999999863         3335567889999999


Q ss_pred             cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (727)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (727)
                      .|++++|+..+++++...     ++++    . +..+|.++...|++++|+..|+++++.        .|....++..++
T Consensus        96 ~g~~~eA~~~l~~~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la  157 (765)
T PRK10049         96 AGQYDEALVKAKQLVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYV  157 (765)
T ss_pred             CCCHHHHHHHHHHHHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence            999999999999999875     3332    3 777999999999999999999999999        788899999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----HHcCCH---HHHHHHHHHHHHHHHhCCC-C
Q 004848          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-----ETKGDH---EAALEHLVLASMTMIANDQ-D  428 (727)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~-----~~~g~~---~~A~~~~~~al~~~~~~~~-~  428 (727)
                      .++...+..++|+..++++.. .|....   .........+..++     ...+++   ++|+..++.++........ .
T Consensus       158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~  233 (765)
T PRK10049        158 QALRNNRLSAPALGAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT  233 (765)
T ss_pred             HHHHHCCChHHHHHHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            999999999999999987664 222100   00000111222222     222345   7788888877765433322 2


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      +....+.......+...|++++|+..|++++..     ++..|..+.  ..+|.+|...|++++|+.+|++++.....  
T Consensus       234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~--  304 (765)
T PRK10049        234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPET--  304 (765)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCC--
Confidence            334444444233446789999999999998775     111244433  33689999999999999999998865211  


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC-------CC-CccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP-------GQ-QSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (727)
                         ...........++.++...|++++|+.+++++....+...       .. ......++..++.++...|++++|+..
T Consensus       305 ---~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~  381 (765)
T PRK10049        305 ---IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR  381 (765)
T ss_pred             ---CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence               1011134566777888999999999999999987754210       11 112345677899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (727)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (727)
                      +++++...        +....++..+|.++...|++++|+..+++++.+        +|+...+++.+|.++...|++++
T Consensus       382 l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~  445 (765)
T PRK10049        382 ARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQ  445 (765)
T ss_pred             HHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence            99998762        223579999999999999999999999999999        89999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 004848          661 AIEILEFVVGI  671 (727)
Q Consensus       661 A~~~~~~al~~  671 (727)
                      |...++++++.
T Consensus       446 A~~~~~~ll~~  456 (765)
T PRK10049        446 MDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1e-23  Score=206.25  Aligned_cols=427  Identities=15%  Similarity=0.059  Sum_probs=314.4

Q ss_pred             ccccCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004848          189 KSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL  268 (727)
Q Consensus       189 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~  268 (727)
                      .+..+...+-.+++|.+||..+..+....|+.+..+-+++.+|...|+ |++.++...+|+++-         |+.+.+|
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd-~~~Vied~TkALEl~---------P~Y~KAl  186 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGD-WEKVIEDCTKALELN---------PDYVKAL  186 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh-HHHHHHHHHHHhhcC---------cHHHHHH
Confidence            344667778889999999999999999999999999999999999998 999999999999873         7789999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH----------HHHHH
Q 004848          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT----------GLEVQ  338 (727)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------al~~~  338 (727)
                      +..+.++-.+|++++|+....-..-+. .-.+...       ...+-+++-.+|. .++.+-+..          -+..+
T Consensus       187 ~RRA~A~E~lg~~~eal~D~tv~ci~~-~F~n~s~-------~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~sy  257 (606)
T KOG0547|consen  187 LRRASAHEQLGKFDEALFDVTVLCILE-GFQNASI-------EPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASY  257 (606)
T ss_pred             HHHHHHHHhhccHHHHHHhhhHHHHhh-hcccchh-------HHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHH
Confidence            999999999999999987665332111 0000000       0111111111111 111111110          00000


Q ss_pred             HHHhCCC-------CchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHH
Q 004848          339 KQVLGET-------DPRVGETCRYLAEAHVQAL---QFSEAQKFCQMALDIHKDNGSP-----ASLEEAADRRLMGLICE  403 (727)
Q Consensus       339 ~~~~~~~-------~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~l~~~~~  403 (727)
                      -..+..+       ......+...-+.-+...+   .|..|...+.+...........     .....+.++...|..++
T Consensus       258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f  337 (606)
T KOG0547|consen  258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF  337 (606)
T ss_pred             HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence            0000000       0000111111111111222   5777777777665544332221     22344778889999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848          404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM  483 (727)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  483 (727)
                      ..|++-.|.+.|..++.+      ++.....|..+|.+|....+.++-...|.+|..+        +|..+.+|+..|.+
T Consensus       338 L~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm  403 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQM  403 (606)
T ss_pred             hcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHH
Confidence            999999999999999864      4444455899999999999999999999999998        89999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004848          484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ  563 (727)
Q Consensus       484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  563 (727)
                      ++.++++++|+.-|++++.+         .|..+..+..++.+.++++++++++..|+.+...+|..       ..++..
T Consensus       404 ~flL~q~e~A~aDF~Kai~L---------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~Evy~~  467 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISL---------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PEVYNL  467 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------chHHHH
Confidence            99999999999999999999         67778899999999999999999999999999999887       478888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (727)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  642 (727)
                      .|.++..+++|++|++.|..++.+-+......-  .+..+...|.+ +.-.+++..|+.++.+|+++        +|..-
T Consensus       468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce  537 (606)
T KOG0547|consen  468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCE  537 (606)
T ss_pred             HHHHHhhHHhHHHHHHHHHHHHhhccccccccc--cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHH
Confidence            999999999999999999999998554221111  11222333322 22348999999999999999        99999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (727)
                      .++..||.+..++|+.++|+++|++++.+.+.
T Consensus       538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  538 QAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988643

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=202.97  Aligned_cols=409  Identities=16%  Similarity=0.145  Sum_probs=245.2

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (727)
                      ..+|+.+|..|....- +.+|+..|+-.++       ..--|.....-.++|.+|++..+|.+|+.+|+.++...+... 
T Consensus       201 fsvl~nlaqqy~~ndm-~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-  271 (840)
T KOG2003|consen  201 FSVLFNLAQQYEANDM-TAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-  271 (840)
T ss_pred             HHHHHHHHHHhhhhHH-HHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-
Confidence            4577888887766653 6777666665543       222233444566789999999999999999999998753322 


Q ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (727)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (727)
                         ....+..+.++|..+.+.|+|+.|+..|+.+++.        .|.. .+-++|..|++..|+-++-.+.|++.+.+-
T Consensus       272 ---k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~-~a~~nl~i~~f~i~d~ekmkeaf~kli~ip  339 (840)
T KOG2003|consen  272 ---KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNF-IAALNLIICAFAIGDAEKMKEAFQKLIDIP  339 (840)
T ss_pred             ---hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccH-HhhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence               2346677999999999999999999999999988        5665 455667788888999998888888887653


Q ss_pred             HhcCCC---------CCHHH-----------------------------------------------------------H
Q 004848          381 KDNGSP---------ASLEE-----------------------------------------------------------A  392 (727)
Q Consensus       381 ~~~~~~---------~~~~~-----------------------------------------------------------a  392 (727)
                      ....+.         +....                                                           .
T Consensus       340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~  419 (840)
T KOG2003|consen  340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI  419 (840)
T ss_pred             CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence            221110         00000                                                           0


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------HHHHhCCC---------------ChhHHHHHHHHHH
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLAS-----------------MTMIANDQ---------------DAEVASVDCSIGD  440 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------~~~~~~~~---------------~~~~~~~~~~la~  440 (727)
                      ..-.+.+..+.+.|+++.|++.+.-.-                 ..+. .+.               +...+.++.+.|.
T Consensus       420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq-ggk~~~~aqqyad~aln~dryn~~a~~nkgn  498 (840)
T KOG2003|consen  420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ-GGKDFADAQQYADIALNIDRYNAAALTNKGN  498 (840)
T ss_pred             hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh-cccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence            000112344566778887777654221                 0000 000               0111222233344


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (727)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (727)
                      +.+..|++++|.+.|++++.-        +.....+++++|..+..+|+.++|+.+|-+...+...         .+.++
T Consensus       499 ~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl  561 (840)
T KOG2003|consen  499 IAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVL  561 (840)
T ss_pred             eeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHH
Confidence            444555556666555555543        4455556666666666666666666666555555322         24555


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 004848          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (727)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (727)
                      ..++.+|..+.+..+|+++|.++..+.+..       ..++..||.+|-+.|+-.+|..++-.....+        +...
T Consensus       562 ~qianiye~led~aqaie~~~q~~slip~d-------p~ilskl~dlydqegdksqafq~~ydsyryf--------p~ni  626 (840)
T KOG2003|consen  562 VQIANIYELLEDPAQAIELLMQANSLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNI  626 (840)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHhcccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhccccc--------Ccch
Confidence            666666666666666666666555554443       2455556666666666666655554444331        1223


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                      .+..+||..|....-+++|+.+|++|.-+        .|........++.|+.+.|+|.+|.+.|+....-        .
T Consensus       627 e~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------f  690 (840)
T KOG2003|consen  627 ETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------F  690 (840)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------C
Confidence            45555666666666666666666666555        5666656666666666666666666666665543        3


Q ss_pred             hhHHHHHHHHHHHHHHhCC
Q 004848          681 PDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       681 p~~~~~~~~La~~~~~~g~  699 (727)
                      |+..+++..|.++.-.+|-
T Consensus       691 pedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  691 PEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             ccchHHHHHHHHHhccccc
Confidence            5666666666666555554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=9.6e-23  Score=197.03  Aligned_cols=391  Identities=16%  Similarity=0.134  Sum_probs=288.2

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 004848          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (727)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  294 (727)
                      ...|+...+-..+|+.+++... |.+|+++|+-|+...+.+.    ......++.++|..+.+.|+|+.|+..|+.+++.
T Consensus       231 kmf~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~  305 (840)
T KOG2003|consen  231 KMFPNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE  305 (840)
T ss_pred             cccCCCceeeeeecceeeehhh-HHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh
Confidence            3456666777788888988875 9999999999988765442    1335678889999999999999999999988876


Q ss_pred             chhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh------CCCCc---------------------
Q 004848          295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL------GETDP---------------------  347 (727)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~---------------------  347 (727)
                      .     +     .+.+-++|..|++..|+-++-.+.|.+.+.+-..+-      ..++|                     
T Consensus       306 ~-----p-----n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~  375 (840)
T KOG2003|consen  306 A-----P-----NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN  375 (840)
T ss_pred             C-----c-----cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence            4     1     233456677788888887777777777655411000      00000                     


Q ss_pred             ---------------------h--------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-
Q 004848          348 ---------------------R--------------------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS-  385 (727)
Q Consensus       348 ---------------------~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-  385 (727)
                                           .                    ....-.+.+..|++.|+++.|++.++-.-........ 
T Consensus       376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa  455 (840)
T KOG2003|consen  376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA  455 (840)
T ss_pred             hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence                                 0                    0111123355677788888888776432211111000 


Q ss_pred             --------------C--------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848          386 --------------P--------------ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (727)
Q Consensus       386 --------------~--------------~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (727)
                                    .              .....+.++.+.|.+.+..|++++|.+.|..++.      ++.....++++
T Consensus       456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfn  529 (840)
T KOG2003|consen  456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFN  529 (840)
T ss_pred             HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHH
Confidence                          0              0001123444555666677999999999999874      67778899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004848          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (727)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (727)
                      +|..+..+|+.++|+++|-+.-.++        ...+.+++.++.+|..+.+..+|++++-++..+.         |...
T Consensus       530 iglt~e~~~~ldeald~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~sli---------p~dp  592 (840)
T KOG2003|consen  530 IGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---------PNDP  592 (840)
T ss_pred             hcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---------CCCH
Confidence            9999999999999999999988873        5678999999999999999999999999998883         3346


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (727)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (727)
                      .++..||.+|-+.|+-.+|..++-...+.++-.       ..+...||..|....-+++|+.+|+++.-+        .+
T Consensus       593 ~ilskl~dlydqegdksqafq~~ydsyryfp~n-------ie~iewl~ayyidtqf~ekai~y~ekaali--------qp  657 (840)
T KOG2003|consen  593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-------IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QP  657 (840)
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhcccccCcc-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------Cc
Confidence            678999999999999999999988887777655       356678899999999999999999998654        23


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF  667 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  667 (727)
                      ........++.|+.+.|+|.+|.++|+.....        .|....++..|.++...+|-. +|.++-.+
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl~-d~key~~k  718 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGLK-DAKEYADK  718 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccch-hHHHHHHH
Confidence            34556667889999999999999999998777        788888999998888877743 34444433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.92  E-value=1.7e-20  Score=208.63  Aligned_cols=438  Identities=12%  Similarity=-0.002  Sum_probs=326.2

Q ss_pred             ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004848          212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS  291 (727)
Q Consensus       212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  291 (727)
                      -.....|..+...+..+...++.|+ +..|++.|+++++..         |....+...++.++...|++++|+.+++++
T Consensus        25 ~~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~eka   94 (822)
T PRK14574         25 SGFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYERY   94 (822)
T ss_pred             cccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence            3445567778899999999999997 999999999998864         222212226778888889999999999999


Q ss_pred             cccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004848          292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (727)
Q Consensus       292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (727)
                      +.-.     +..    ...+..+|.+|...|++++|+..|+++++.        +|....++..++.++...++.++|+.
T Consensus        95 ~~p~-----n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574         95 QSSM-----NIS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             ccCC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            8321     111    123555688999999999999999999999        78888888899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004848          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (727)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (727)
                      .+++++...+...         .+..++.++...+++.+|+..+++++..      .|....++..+..++...|-...|
T Consensus       158 ~l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a  222 (822)
T PRK14574        158 QATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPA  222 (822)
T ss_pred             HHHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHH
Confidence            9999988876531         2344555666677777799999988753      233333333333333333333222


Q ss_pred             HH-----------------------------------------HHHHHHHHHHHhcC------CCChhHHHHHHHHHHHH
Q 004848          452 GF-----------------------------------------AYQKALTAFKTNKG------ENHPAVASVFVRLADMY  484 (727)
Q Consensus       452 ~~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~~~  484 (727)
                      .+                                         ..++++.....+..      +.++....+....-.++
T Consensus       223 ~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL  302 (822)
T PRK14574        223 LRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL  302 (822)
T ss_pred             HHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence            22                                         22333333333221      12334455666667778


Q ss_pred             HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004848          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (727)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (727)
                      ...|++.+++..|+.....      +..-|.  .+...+|..|...+++++|+.+|..++.-.+........ ......|
T Consensus       303 ~~r~r~~~vi~~y~~l~~~------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L  373 (822)
T PRK14574        303 LVRHQTADLIKEYEAMEAE------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDL  373 (822)
T ss_pred             HHhhhHHHHHHHHHHhhhc------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHH
Confidence            8899999999999876655      222233  366778999999999999999999997754322111111 2223567


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH-h------CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          565 GVMYYMLGNYSDSYDSFKNAISKLRA-I------GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~-~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      ...|...++|++|..++++..+..+- .      .....+........++.++...|++.+|++.+++.+..        
T Consensus       374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------  445 (822)
T PRK14574        374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------  445 (822)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            88899999999999999998873220 0      11223445678888999999999999999999999988        


Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .|....++..+|.++...|.+.+|...++.++.+        +|+...+...++.++..+|++.+|. .....+++..|+
T Consensus       446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe  516 (822)
T PRK14574        446 APANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQME-LLTDDVISRSPE  516 (822)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCC
Confidence            8999999999999999999999999999888765        7999999999999999999999999 999999999998

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.91  E-value=1.3e-21  Score=221.78  Aligned_cols=361  Identities=12%  Similarity=-0.003  Sum_probs=288.3

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCC---HHHHHHH--------
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMC--------  330 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~--------  330 (727)
                      |.....+..++......|++++|..+|+++.........      .......++.+|...+.   ..+++.+        
T Consensus       373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  446 (987)
T PRK09782        373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL------SQTLMARLASLLESHPYLATPAKVAILSKPLPLAE  446 (987)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc------CHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence            334667888999999999999999999999985311111      11224477777777655   3333222        


Q ss_pred             --------------HHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004848          331 --------------YTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD  394 (727)
Q Consensus       331 --------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~  394 (727)
                                    +..+...    ++ ..|.  ...++..+|.++.. +++.+|+..+.+++...|..         ..
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---------~~  511 (987)
T PRK09782        447 QRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---------WQ  511 (987)
T ss_pred             hHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------HH
Confidence                          2222222    22 2456  88899999999987 89999999999999887642         23


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (727)
Q Consensus       395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (727)
                      ...+|.++...|++++|+.+|+++...      .+. ...+..+|.++...|++++|+.+|++++..        .|...
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~  576 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDN  576 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccH
Confidence            666778888999999999999986431      111 234678899999999999999999999987        56666


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      ..+..++......|++++|+..|++++++         .|. ...+..+|.++...|++++|+..|++++.+.|..    
T Consensus       577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~----  642 (987)
T PRK09782        577 ALYWWLHAQRYIPGQPELALNDLTRSLNI---------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN----  642 (987)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----
Confidence            66667777777889999999999999988         333 5688999999999999999999999999997766    


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004848          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (727)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (727)
                         ..++.++|.++...|++++|+.+|++++++        .+....++.++|.++...|++++|+.+|++++++     
T Consensus       643 ---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l-----  706 (987)
T PRK09782        643 ---SNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD-----  706 (987)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence               478899999999999999999999999986        2334679999999999999999999999999999     


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCCh
Q 004848          635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV  700 (727)
Q Consensus       635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~  700 (727)
                         .|+.+.+....|.+.....+++.|.+.+.++..+        +|... +....|.++...+++
T Consensus       707 ---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~~~~  760 (987)
T PRK09782        707 ---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTANNNV  760 (987)
T ss_pred             ---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhcccc
Confidence               8999999999999999999999999999999876        45544 667777777777765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-22  Score=192.85  Aligned_cols=329  Identities=15%  Similarity=0.148  Sum_probs=278.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (727)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (727)
                      -|.-+++.|++...+.+|+.|++.-     .++......+|..||.+|+.+++|++|+++...-+.+.+.+- + ....+
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-d-klGEA   95 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-D-KLGEA   95 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-c-hhccc
Confidence            4778899999999999999999873     555555666799999999999999999999988887765542 1 23455


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------------HHH
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------------HEA  410 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~--------------------~~~  410 (727)
                      .+.-+||.++...|.|++|+.++.+-|.+....++.  ...+.+++++|.+|...|+                    ++.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~  173 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN  173 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence            677899999999999999999999999999988854  5667889999999998875                    567


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004848          411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL  490 (727)
Q Consensus       411 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  490 (727)
                      |.++|..-+.+....++......++-+||..|+.+|+|+.|+.+.+.-+.+.++.+  +......++.+||.+|...|++
T Consensus       174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~f  251 (639)
T KOG1130|consen  174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGNF  251 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhccc
Confidence            88888888888888888888899999999999999999999999999999988876  3455678999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (727)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (727)
                      +.|+++|+.++.+..++.   +....+...+.||..|.-..++++|+.|+.+-+.+.... ++......+++.||..|-.
T Consensus       252 e~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  252 ELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             HhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHh
Confidence            999999999999887752   244457888999999999999999999999999998876 5556667888999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH
Q 004848          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (727)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  616 (727)
                      .|..++|+.+.+..+++..++.+.....  .+..++...-...|..
T Consensus       328 lg~h~kAl~fae~hl~~s~ev~D~sgel--Tar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRSSLEVNDTSGEL--TARDNLSDLILELGQE  371 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcchhh--hhhhhhHHHHHHhCCC
Confidence            9999999999999999999887765442  3445566666666643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=5.2e-23  Score=209.94  Aligned_cols=304  Identities=16%  Similarity=0.130  Sum_probs=242.0

Q ss_pred             HHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848          351 ETCRYLAEAHVQA--LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (727)
Q Consensus       351 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (727)
                      ..+..+|..|...  -+..+|+..|.+.-.....        ...++..+|..|+.+++|++|..+|+.+.+.-.   -.
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~n--------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p---~r  386 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYN--------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP---YR  386 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cc
Confidence            3344444444433  3557888888873222222        136788999999999999999999987754311   11


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      ....++|   ..+++.+.+--+--.+.+..+..        +|..+.+|..+|.+|..+++++.|+++|++|+.+     
T Consensus       387 v~~meiy---ST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----  450 (638)
T KOG1126|consen  387 VKGMEIY---STTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----  450 (638)
T ss_pred             ccchhHH---HHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence            1111121   22222222222211222333333        7888899999999999999999999999999999     


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                          ++..+.+|..+|.=+.....+|.|..+|+.|+.+.++.       ..+|+.+|.+|.++++++.|.-+|++|+.+ 
T Consensus       451 ----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-  518 (638)
T KOG1126|consen  451 ----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-  518 (638)
T ss_pred             ----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhhcC-
Confidence                66678899999999999999999999999999988776       479999999999999999999999999987 


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                             .+....++..+|.++.+.|+.++|+.+|++|+.+        +|......+..|.++...+++++|+..+++.
T Consensus       519 -------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL  583 (638)
T KOG1126|consen  519 -------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL  583 (638)
T ss_pred             -------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence                   3345678888999999999999999999999999        8888889999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          669 VGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++        -|+...+++.+|.+|.+.|+.+.|+ ..|--|++++|.
T Consensus       584 k~~--------vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpk  623 (638)
T KOG1126|consen  584 KEL--------VPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPK  623 (638)
T ss_pred             HHh--------CcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCc
Confidence            887        5899999999999999999999999 999999999998

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1e-21  Score=195.57  Aligned_cols=412  Identities=20%  Similarity=0.233  Sum_probs=269.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCcc
Q 004848          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (727)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (727)
                      -+-..|+..+..|+ |+.|+.+|.+|+.+-         |.....|.+...+|..+|+|++|+.--.+.+++.     +.
T Consensus         4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~   68 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGD-FETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD   68 (539)
T ss_pred             HHHHHHHhhccccc-HHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence            45678999999997 999999999999873         2246678899999999999999999999999986     33


Q ss_pred             chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC-----------------
Q 004848          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ-----------------  365 (727)
Q Consensus       303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  365 (727)
                      .    ...|.++|..+.-+|+|++|+..|.+.|+.        +|.....+..|+.++.....                 
T Consensus        69 w----~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~  136 (539)
T KOG0548|consen   69 W----AKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL  136 (539)
T ss_pred             h----hhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence            3    345999999999999999999999999999        78888888888888722210                 


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------hC
Q 004848          366 ----FSEAQKFCQMALDIHKDNGSPASL--EEAADRRLMGLICETKGDHEAALEHLVLASMTMI--------------AN  425 (727)
Q Consensus       366 ----~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------------~~  425 (727)
                          +-.....|...+...+.....-..  ........++.+.   |....  ..+........              ..
T Consensus       137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~---~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~  211 (539)
T KOG0548|consen  137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK---GVDEL--LFYASGIEILASMAEPCKQEHNGFPII  211 (539)
T ss_pred             hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh---cCccc--cccccccccCCCCCCcccccCCCCCcc
Confidence                011112222333332222110000  0000000011100   00000  00000000000              00


Q ss_pred             CC------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          426 DQ------DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (727)
Q Consensus       426 ~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (727)
                      .+      ....+.-.-.+|...+...++..|+..|..++++        + .....+.+.+.+|+..|.+.+++..+..
T Consensus       212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~  282 (539)
T KOG0548|consen  212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEK  282 (539)
T ss_pred             chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence            00      0113455678999999999999999999999998        4 6677888999999999999999999999


Q ss_pred             HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (727)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (727)
                      +++..+..  ..+...++.++..+|..|..+++++.|+.+|++++.....               ..+.-.....+++..
T Consensus       283 a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k  345 (539)
T KOG0548|consen  283 AVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALK  345 (539)
T ss_pred             HHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHH
Confidence            88874432  1112235566677888999999999999999998776543               122223333333333


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH
Q 004848          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD  659 (727)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  659 (727)
                      ..+...-+        .+..+.-...-|..++..|+|..|+.+|.+|+..        +|+....|.+.|.||..+|.+.
T Consensus       346 ~~e~~a~~--------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~  409 (539)
T KOG0548|consen  346 EAERKAYI--------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYP  409 (539)
T ss_pred             HHHHHHhh--------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHH
Confidence            33322221        1112333444466677777777777777777666        6666677777777777777777


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .|+...+.++++        +|....+|.+-|.++..+.+|++|. +.|+++++.||.
T Consensus       410 ~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~  458 (539)
T KOG0548|consen  410 EALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPS  458 (539)
T ss_pred             HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCch
Confidence            777777777665        5666777777777777777777777 777777777665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=4.8e-21  Score=203.34  Aligned_cols=310  Identities=15%  Similarity=0.138  Sum_probs=250.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (727)
                      ....+.+|..+...|++++|+..|++++...|..        ..++..+|.++...|++++|+.++++++..  ......
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~  104 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTRE  104 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHH
Confidence            3455667888999999999999999999986543        356899999999999999999999987641  001112


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      ....++..+|.+|...|++++|+.+|+++++.        .|....++..++.++...|++++|+..+++++.....   
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---  173 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---  173 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence            34467899999999999999999999999876        5667788999999999999999999999998876321   


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (727)
                       .........+..+|.++...|++++|+.+|+++++..+..       ..++..+|.++...|++++|+.+|++++... 
T Consensus       174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-  244 (389)
T PRK11788        174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD-  244 (389)
T ss_pred             -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence             1122345567789999999999999999999999875543       4577889999999999999999999998751 


Q ss_pred             HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (727)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (727)
                            +.....++..++.+|...|++++|+.++++++..        +|+.. .+..++.++...|++++|+.++++++
T Consensus       245 ------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l  309 (389)
T PRK11788        245 ------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQL  309 (389)
T ss_pred             ------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  2233567888999999999999999999999987        56554 44889999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHH
Q 004848          670 GIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLD  713 (727)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al~  713 (727)
                      +.        +|+.......++..+..  .|+..+|+ ..+++.++
T Consensus       310 ~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~-~~~~~~~~  346 (389)
T PRK11788        310 RR--------HPSLRGFHRLLDYHLAEAEEGRAKESL-LLLRDLVG  346 (389)
T ss_pred             Hh--------CcCHHHHHHHHHHhhhccCCccchhHH-HHHHHHHH
Confidence            76        57766555444443322  45888888 77777664

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.2e-20  Score=183.78  Aligned_cols=374  Identities=13%  Similarity=0.084  Sum_probs=275.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      ...++..|.++...|....|+..|..++...         +..+.+|..|+.+....       .........     ..
T Consensus       164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~~-------e~~~~l~~~-----l~  222 (559)
T KOG1155|consen  164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY---------PWFWSAWLELSELITDI-------EILSILVVG-----LP  222 (559)
T ss_pred             hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC---------CcchHHHHHHHHhhchH-------HHHHHHHhc-----Cc
Confidence            3446666777777777777777777766543         11233455555443221       111111111     00


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  423 (727)
                       .......-+.++.++....+.++++.-++....+ .+..        ...-...|.+.....++++|+..|+...+   
T Consensus       223 -~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~--------~~i~~~~A~~~y~~rDfD~a~s~Feei~k---  290 (559)
T KOG1155|consen  223 -SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNS--------MYIKTQIAAASYNQRDFDQAESVFEEIRK---  290 (559)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHh---
Confidence             0123334455666777777777777776666554 2221        13456678888999999999999987754   


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                         ++|....-......+++-..+-.+-.-+.+.+..+        +...+.+...+|+.|...++.++|+.+|++|+++
T Consensus       291 ---nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL  359 (559)
T KOG1155|consen  291 ---NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL  359 (559)
T ss_pred             ---cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence               23332222333344444444433333333444444        4555677788999999999999999999999999


Q ss_pred             HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (727)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (727)
                               +|....+|..+|.-|..+++...|+..|++|+++.|..       ..+|+.||.+|..++.+.=|+-+|++
T Consensus       360 ---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  360 ---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             ---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence                     56678899999999999999999999999999998876       48999999999999999999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      |+.+        .+.....|..||.||.+.++.++|+++|.+|+..        ......++..||.+|..+++.++|..
T Consensus       424 A~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  424 ALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHH
Confidence            9986        2334689999999999999999999999999987        34456699999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (727)
                      +|++.++.. ..-|...|+...+...|+..+.+.+++++|. .+...++.-++
T Consensus       488 ~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~~  538 (559)
T KOG1155|consen  488 YYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGET  538 (559)
T ss_pred             HHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCCc
Confidence            999999976 4556778888999999999999999999998 87777766544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.1e-20  Score=188.79  Aligned_cols=430  Identities=14%  Similarity=0.113  Sum_probs=313.0

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc------
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI------  294 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  294 (727)
                      +.-.+.+|++++..++ |..|......- .+      .   .....+.+..+.++....+|++|..++.++-..      
T Consensus        49 p~d~~~~aq~l~~~~~-y~ra~~lit~~-~l------e---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y  117 (611)
T KOG1173|consen   49 PADIYWLAQVLYLGRQ-YERAAHLITTY-KL------E---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY  117 (611)
T ss_pred             hHHHHHHHHHHHhhhH-HHHHHHHHHHh-hh------h---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence            3455678889999887 66665544332 11      1   123567888899999999999999998843110      


Q ss_pred             chh---------ccCccc-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-
Q 004848          295 PVI---------EEGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA-  363 (727)
Q Consensus       295 ~~~---------~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-  363 (727)
                      ...         ..+.+. .......++..|.+|..+.++++|...|.+|+..        ++...++...+-..++.. 
T Consensus       118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~~~lvs~~mlt~  189 (611)
T KOG1173|consen  118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAFEKLVSAHMLTA  189 (611)
T ss_pred             cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHhcch
Confidence            000         001000 1122344677889999999999999999999877        444444333332221111 


Q ss_pred             ----------------cCHHHHHHHHHHHHHHHHhcCC-----C-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          364 ----------------LQFSEAQKFCQMALDIHKDNGS-----P-----ASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (727)
Q Consensus       364 ----------------g~~~~A~~~~~~al~~~~~~~~-----~-----~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~  417 (727)
                                      +...+-++.+-++......+..     +     ........+...+..++..++|.+..+.++.
T Consensus       190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~  269 (611)
T KOG1173|consen  190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEE  269 (611)
T ss_pred             hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHH
Confidence                            1111111111111100000000     0     0011134566678888999999999999887


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004848          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (727)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (727)
                      .+..     ++......-..+| ++..+|+..+=...-.+.++.        .|..+..|+.+|..|...|++.+|..+|
T Consensus       270 lle~-----dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~--------yP~~a~sW~aVg~YYl~i~k~seARry~  335 (611)
T KOG1173|consen  270 LLEK-----DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDL--------YPSKALSWFAVGCYYLMIGKYSEARRYF  335 (611)
T ss_pred             HHhh-----CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHh--------CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence            7643     2222223334566 788888877666555555555        7999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 004848          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (727)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (727)
                      -++..+         ++....+|...|..+...|..++|+..|..|-++.+...       .-...+|.-|...+++..|
T Consensus       336 SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-------lP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  336 SKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-------LPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-------chHHHHHHHHHHhccHHHH
Confidence            999988         566788999999999999999999999999999987652       2345689999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 004848          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (727)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  657 (727)
                      ..+|.+|+.+.+        ....+++.+|.+.+..+.|.+|..+|+.++...+..... .+.....+.+||.+|.+++.
T Consensus       400 e~Ff~~A~ai~P--------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  400 EKFFKQALAIAP--------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             HHHHHHHHhcCC--------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhh
Confidence            999999999842        245789999999999999999999999999776665543 33455689999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +++|+.+|++++.+        .|..+.++..+|.+|..+|+++.|+ .+|.++|.++|.
T Consensus       471 ~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~  521 (611)
T KOG1173|consen  471 YEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPD  521 (611)
T ss_pred             HHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCc
Confidence            99999999999987        6888999999999999999999999 999999999997

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=1.4e-20  Score=199.66  Aligned_cols=309  Identities=14%  Similarity=0.104  Sum_probs=249.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (727)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (727)
                      ..+.+|..+...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+++++...    .....
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~  104 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE  104 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence            3667899999999999999999999998        68888999999999999999999999999887631    11112


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (727)
                      ....++..+|.+|...|++++|+.+|.+++..      .+....++..++.++...|++++|+..+++++.....   ..
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~  175 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL  175 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence            23457899999999999999999999988642      4555678899999999999999999999998875211   01


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .......+..+|.++...|++++|+.+|+++++..         +....++..+|.++...|++++|+.++++++...+.
T Consensus       176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD---------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            11234567789999999999999999999999872         234567889999999999999999999999876433


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      .      ...++..++.+|...|++++|..++++++...    + +   . ..+..++.++...|++++|+.+|+++++.
T Consensus       247 ~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-~---~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        247 Y------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY----P-G---A-DLLLALAQLLEEQEGPEAAQALLREQLRR  311 (389)
T ss_pred             h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-C---c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            2      23567789999999999999999999988762    1 1   1 23478999999999999999999999998


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHH
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGI  671 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~  671 (727)
                              .|+.......++..+..  .|+..+|+..+++.++.
T Consensus       312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence                    78877544444443322  56899999999988863

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=6.4e-20  Score=178.77  Aligned_cols=374  Identities=17%  Similarity=0.138  Sum_probs=285.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      ...-.++..|.++...|. ...|+..|..++..+         |....+|..|+.+.-.       ++.....+.-.   
T Consensus       162 ~D~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~---------P~~W~AWleL~~lit~-------~e~~~~l~~~l---  221 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGL-LSLAIDSFVEVVNRY---------PWFWSAWLELSELITD-------IEILSILVVGL---  221 (559)
T ss_pred             chhHHHHHHHHHHHhhch-HHHHHHHHHHHHhcC---------CcchHHHHHHHHhhch-------HHHHHHHHhcC---
Confidence            346678889999999985 899999999988754         5557777777666422       12222211110   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                        +.+  ..+..-..++.++....+.++++.-++..+...       -|.....-...|.+.+...+|++|+..|+..++
T Consensus       222 --~~~--~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k  290 (559)
T KOG1155|consen  222 --PSD--MHWMKKFFLKKAYQELHQHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK  290 (559)
T ss_pred             --ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence              110  122234567888888888888888877766652       356666777889999999999999999999887


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      ..|-..+     .   +-....+++-..+-. .+.++-  ......   +.....+.+-+|..|...++.++|+.+|++|
T Consensus       291 nDPYRl~-----d---mdlySN~LYv~~~~s-kLs~LA--~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA  356 (559)
T KOG1155|consen  291 NDPYRLD-----D---MDLYSNVLYVKNDKS-KLSYLA--QNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRA  356 (559)
T ss_pred             cCCCcch-----h---HHHHhHHHHHHhhhH-HHHHHH--HHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHH
Confidence            6443322     1   223333333333322 122221  111111   2223345677899999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (727)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (727)
                      +++        +|....+|..+|.-|..+.+...|+..|++|+++         .|....+|+.||+.|.-++-..=|+-
T Consensus       357 LkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLy  419 (559)
T KOG1155|consen  357 LKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALY  419 (559)
T ss_pred             Hhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHH
Confidence            999        8999999999999999999999999999999999         45567899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004848          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (727)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (727)
                      +|++|+...|..       ..+|..||.+|.+.++.++|+++|.+++..-        .....++..||.+|.+.++.++
T Consensus       420 YfqkA~~~kPnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  420 YFQKALELKPND-------SRLWVALGECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHHHhcCCCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHH
Confidence            999999987655       4789999999999999999999999999862        2246799999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      |..+|++.++.. ...|...+....+...||.-+.+.+++++|..+..+++.
T Consensus       485 Aa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  485 AAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            999999999976 333444677788888899999999999999999988875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.90  E-value=1e-21  Score=187.94  Aligned_cols=330  Identities=17%  Similarity=0.186  Sum_probs=277.8

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004848          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (727)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (727)
                      |.-+++.|++...+.+|+.|++......    .....+|..||.+|+.+++|++|+++...-+.+.+..++....+..-.
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg   99 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG   99 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence            5567889999999999999998765432    334567899999999999999999999888888888888888888889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 004848          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK--------------------LRESKSY  496 (727)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~  496 (727)
                      +||..+..+|.|++|+.++.+-+.+.++++  +......++++||.+|...|+                    ++.|.++
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f  177 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF  177 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence            999999999999999999999999998887  356678999999999998775                    3556777


Q ss_pred             HHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHH
Q 004848          497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD  576 (727)
Q Consensus       497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  576 (727)
                      |..-+++.++..   +......++-+||..|+.+|+|++|+..-+.-+.+.... |+......++.++|.+|.-.|+++.
T Consensus       178 y~eNL~l~~~lg---Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~  253 (639)
T KOG1130|consen  178 YMENLELSEKLG---DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFEL  253 (639)
T ss_pred             HHHHHHHHHHhh---hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHh
Confidence            777777766632   234456788999999999999999999999999998876 7777777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848          577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (727)
Q Consensus       577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (727)
                      |+++|+..+.+..++++..  ..+...+.||..|....++++|+.|+.+-+.+.+++.+  ......+++.||..|...|
T Consensus       254 A~ehYK~tl~LAielg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg  329 (639)
T KOG1130|consen  254 AIEHYKLTLNLAIELGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALG  329 (639)
T ss_pred             HHHHHHHHHHHHHHhcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhh
Confidence            9999999999999988764  45778889999999999999999999999999888765  4566779999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhH
Q 004848          657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (727)
Q Consensus       657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (727)
                      ..++|+.+.++.+++..++-.+.  ....+..+|..+....|..+.
T Consensus       330 ~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  330 EHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCcc
Confidence            99999999999999887764322  234456677777777776554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.2e-21  Score=200.09  Aligned_cols=301  Identities=17%  Similarity=0.181  Sum_probs=247.5

Q ss_pred             HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848          309 AGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (727)
Q Consensus       309 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (727)
                      ..+..+|..|...  -+..+|+..|.+.-..        +++...++..+|..|+.+++|++|..+|+.+-++.|-..+.
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~  389 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG  389 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            3455566555543  4567888888883333        57788999999999999999999999999998887654432


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004848          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (727)
Q Consensus       387 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (727)
                              .-....+++.+.+ +-++.++-+-  +   ...++.....|+.+|.||..+++++.|+++|++|+++     
T Consensus       390 --------meiyST~LWHLq~-~v~Ls~Laq~--L---i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----  450 (638)
T KOG1126|consen  390 --------MEIYSTTLWHLQD-EVALSYLAQD--L---IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----  450 (638)
T ss_pred             --------hhHHHHHHHHHHh-hHHHHHHHHH--H---HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence                    1122223332222 1222333222  2   2345666789999999999999999999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004848          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (727)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (727)
                         +|..+.+|..+|.=+....++|.|..+|+.|+.+         .+....+|+.+|.+|.++++++.|.-+|++|+.+
T Consensus       451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I  518 (638)
T KOG1126|consen  451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI  518 (638)
T ss_pred             ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence               8999999999999999999999999999999998         5556789999999999999999999999999999


Q ss_pred             HHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       547 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                      .|..       ..+...+|.++.+.|+.++|+.+|++|+.+-        +......+..|.++...+++++|+..+++.
T Consensus       519 NP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeL  583 (638)
T KOG1126|consen  519 NPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEEL  583 (638)
T ss_pred             Cccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence            8766       4677889999999999999999999999862        223467788999999999999999999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      .++        -|+...+++.+|.+|.++|+.+.|+..|--|..+
T Consensus       584 k~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  584 KEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            998        8999999999999999999999999999999876

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.89  E-value=3.6e-19  Score=184.36  Aligned_cols=434  Identities=14%  Similarity=0.061  Sum_probs=338.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      ..+.++-.+...+...|+ ++.+.++|++++...         ......|+.++.+|...|....|+.+++..+...+  
T Consensus       321 nd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~---------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~--  388 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFS---------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE--  388 (799)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhh---------hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence            455666677777888887 999999999998764         22355688999999999999999999999987742  


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-----------CHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-----------QFS  367 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~  367 (727)
                       .+.++..   .++.-..|+...+.+++++.+..+++......   .....+.++..+|.+|..+-           ...
T Consensus       389 -~ps~~s~---~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~  461 (799)
T KOG4162|consen  389 -QPSDISV---LLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHK  461 (799)
T ss_pred             -CCCcchH---HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence             2333322   34455566778899999999999999965332   23445677888888876432           246


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004848          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR  447 (727)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  447 (727)
                      ++++.+++++++.+.+.        .+.+.++.-|...++.+.|+.+..+++.+     .....+.+|..++.++...++
T Consensus       462 kslqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l-----~~~~~~~~whLLALvlSa~kr  528 (799)
T KOG4162|consen  462 KSLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALAL-----NRGDSAKAWHLLALVLSAQKR  528 (799)
T ss_pred             HHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHhhhhh
Confidence            77888888888876654        45899999999999999999999999864     234556789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (727)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (727)
                      +.+|+.....+++-        .+.+.........+-...++.++|+..+...+.+++...+-...-.........+.+.
T Consensus       529 ~~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~  600 (799)
T KOG4162|consen  529 LKEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH  600 (799)
T ss_pred             hHHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence            99999999999987        4554455555566666789999999999999999875321111111122233334445


Q ss_pred             HhcccHHHHHHHHHHHHHHHHhC----------------CCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          528 ESMNELEQAIKLLQKALKIYNDA----------------PGQQ---STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~----------------~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                      ....+..+|+..+.++..+....                ++..   .....+|...+..+...++.++|..++.++-.+.
T Consensus       601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~  680 (799)
T KOG4162|consen  601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID  680 (799)
T ss_pred             cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence            55566777777777766654421                1111   1234567788999999999999999999998863


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH--HHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE--ILE  666 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~  666 (727)
                              +..+..|+..|.++...|++.+|.+.|..|+.+        +|+...+...+|.++...|+..-|..  ++.
T Consensus       681 --------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~  744 (799)
T KOG4162|consen  681 --------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLS  744 (799)
T ss_pred             --------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence                    456789999999999999999999999999999        89999999999999999999888888  999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++++        +|.+.++|+.||.++.++|+.++|. ++|..++++++.
T Consensus       745 dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S  786 (799)
T KOG4162|consen  745 DALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES  786 (799)
T ss_pred             HHHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence            99987        7999999999999999999999999 999999999987

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.88  E-value=5.8e-18  Score=193.73  Aligned_cols=416  Identities=12%  Similarity=0.068  Sum_probs=282.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      .....++..-..+.+.|+ +++|++.|++....      +.. +.....+..+...+...|..++|..+|+....     
T Consensus       368 ~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~------gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----  434 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR------GLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----  434 (1060)
T ss_pred             CCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC------CCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----
Confidence            334455556666778897 88888888775431      111 11233344455667778888888888876543     


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                        +     ...+|..+-..|...|++++|..+|.++.+..       -.....+|..+...|.+.|++++|..+|+++..
T Consensus       435 --p-----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~  500 (1060)
T PLN03218        435 --P-----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN  500 (1060)
T ss_pred             --C-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence              1     22347777778888888888888888776651       122346677788888888888888888887765


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      ....    +.   ..+|..+...|.+.|++++|+.+|.....    .+..|+ ..+|..+...|.+.|++++|..+|.++
T Consensus       501 ~Gv~----Pd---vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM  568 (1060)
T PLN03218        501 AGVE----AN---VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLAEM  568 (1060)
T ss_pred             cCCC----CC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3211    11   25678888888888888888888876542    233343 356778888888888888888888877


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (727)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (727)
                      ......    -.|+ ..+|..+...|.+.|++++|..+|+++.+..      .  .....+|+.+...|.+.|++++|+.
T Consensus       569 ~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g------i--~p~~~tynsLI~ay~k~G~~deAl~  635 (1060)
T PLN03218        569 KAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN------I--KGTPEVYTIAVNSCSQKGDWDFALS  635 (1060)
T ss_pred             HHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------C--CCChHHHHHHHHHHHhcCCHHHHHH
Confidence            553100    0233 4677777888888888888888888776651      1  1124567778888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004848          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (727)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (727)
                      +|.+....     +..+. ..+|..+...|.+.|++++|..++.++.+.    +-.   ....+|..+...|.+.|++++
T Consensus       636 lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~---pd~~tynsLI~ay~k~G~~ee  702 (1060)
T PLN03218        636 IYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIK---LGTVSYSSLMGACSNAKNWKK  702 (1060)
T ss_pred             HHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC---CCHHHHHHHHHHHHhCCCHHH
Confidence            88877653     22222 346777788888888888888888876642    111   124577888888888888888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                      |.++|++....     + -.|+. .+|..|...|.+.|++++|+++|++....      .-.|+ ..++..|...+.+.|
T Consensus       703 A~~lf~eM~~~-----g-~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~------Gi~Pd-~~Ty~sLL~a~~k~G  768 (1060)
T PLN03218        703 ALELYEDIKSI-----K-LRPTV-STMNALITALCEGNQLPKALEVLSEMKRL------GLCPN-TITYSILLVASERKD  768 (1060)
T ss_pred             HHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCC
Confidence            88888876543     1 13443 46788888888888888888888877543      12344 446666677888888


Q ss_pred             ChhHHHHHHHHHHHHH
Q 004848          699 RVRSRKAQSLETLLDA  714 (727)
Q Consensus       699 ~~~~A~~~~l~~al~~  714 (727)
                      ++++|. ..+..+++.
T Consensus       769 ~le~A~-~l~~~M~k~  783 (1060)
T PLN03218        769 DADVGL-DLLSQAKED  783 (1060)
T ss_pred             CHHHHH-HHHHHHHHc
Confidence            888888 888777653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.88  E-value=1.9e-19  Score=204.29  Aligned_cols=432  Identities=11%  Similarity=0.042  Sum_probs=299.1

Q ss_pred             cccccccccccccccccCCC--CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004848          197 MKKRKGKLHKGQDVSEAGLD--KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAI  274 (727)
Q Consensus       197 ~~~~~~~~~a~~~~~~~~~~--~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~  274 (727)
                      +...+.+..+.+.+......  .+-....+..+...+...++ ++.|...+....+.-     -.++   ...+..+...
T Consensus        97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g-----~~~~---~~~~n~Li~~  167 (697)
T PLN03081         97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSG-----FEPD---QYMMNRVLLM  167 (697)
T ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhC-----CCcc---hHHHHHHHHH
Confidence            34455555555444433221  11234556667777777776 888888777665531     1222   4567788899


Q ss_pred             HHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-------------
Q 004848          275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-------------  341 (727)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------  341 (727)
                      |.+.|++++|..+|++....            ...+|..+...|.+.|++++|+.+|++.++.....             
T Consensus       168 y~k~g~~~~A~~lf~~m~~~------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~  235 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA  235 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCCC------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence            99999999999999987542            12348889999999999999999999886531000             


Q ss_pred             ---------------hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 004848          342 ---------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG  406 (727)
Q Consensus       342 ---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g  406 (727)
                                     ....-.....++..|...|.+.|++++|..+|++....           ...+|+.+...|...|
T Consensus       236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----------~~vt~n~li~~y~~~g  304 (697)
T PLN03081        236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----------TTVAWNSMLAGYALHG  304 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----------ChhHHHHHHHHHHhCC
Confidence                           00000011234456677788888888888888765321           1246888888888888


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (727)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (727)
                      ++++|+.+|.+...    .+..|+. .++..+...+...|++++|...+..+++.       ..+....++..|...|.+
T Consensus       305 ~~~eA~~lf~~M~~----~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k  372 (697)
T PLN03081        305 YSEEALCLYYEMRD----SGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSK  372 (697)
T ss_pred             CHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHH
Confidence            88888888876542    2333333 46777788888888888888888777665       234455677888888888


Q ss_pred             cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 004848          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (727)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (727)
                      .|++++|...|++..+.            ...+|+.+...|...|+.++|+++|++....     |..+. ..++..+..
T Consensus       373 ~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~~~ll~  434 (697)
T PLN03081        373 WGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPN-HVTFLAVLS  434 (697)
T ss_pred             CCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCC-HHHHHHHHH
Confidence            88888888888765321            1346888888888888888888888887653     22222 245677778


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004848          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (727)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (727)
                      .+.+.|..++|..+|+...+.   . +..+  ....|..+..+|.+.|++++|.++++++-         ..|+. .+|.
T Consensus       435 a~~~~g~~~~a~~~f~~m~~~---~-g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~~---------~~p~~-~~~~  498 (697)
T PLN03081        435 ACRYSGLSEQGWEIFQSMSEN---H-RIKP--RAMHYACMIELLGREGLLDEAYAMIRRAP---------FKPTV-NMWA  498 (697)
T ss_pred             HHhcCCcHHHHHHHHHHHHHh---c-CCCC--CccchHhHHHHHHhcCCHHHHHHHHHHCC---------CCCCH-HHHH
Confidence            888888888888888877642   1 1111  23578888888889999999988876531         13443 4688


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      .|...+...|+++.|...+++.+++        .|+....|..|..+|.+.|++++|. +.++...+..
T Consensus       499 ~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~g  558 (697)
T PLN03081        499 ALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRKG  558 (697)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHcC
Confidence            8888888999999999888887654        4666678889999999999999999 8888776543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.87  E-value=4e-19  Score=187.12  Aligned_cols=393  Identities=16%  Similarity=0.149  Sum_probs=294.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      +..+...|..++..|++++|..++.+++...     +.++    .+|+.||.+|..+|+.+++...+-.|-.+       
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~----~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------  202 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNP----IAYYTLGEIYEQRGDIEKALNFWLLAAHL-------  202 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccch----hhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence            3446667888888899999999999999886     3333    35999999999999999999999888877       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004848          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  424 (727)
                       +|.....|..++.....+|++.+|.-+|.+|+...|.+.        ...+..+.+|.+.|++..|...|.+.+.....
T Consensus       203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence             677779999999999999999999999999999988764        45788899999999999999999988765431


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--
Q 004848          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR--  502 (727)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  502 (727)
                      . +....-......+..+...++-+.|+..++.++....      .......+..++.++.....++.|.........  
T Consensus       274 ~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~  346 (895)
T KOG2076|consen  274 V-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE  346 (895)
T ss_pred             h-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence            1 1112223334457788888888999999999888322      233345566889999999999999888766555  


Q ss_pred             --------------------HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004848          503 --------------------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (727)
Q Consensus       503 --------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (727)
                                          ++.-  +..-...+..+...++.+..+.++..+++..+..--..      ........+.
T Consensus       347 ~e~d~~e~~~~~~~~~~~~~~~~~--~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~  418 (895)
T KOG2076|consen  347 SEKDDSEWDTDERRREEPNALCEV--GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYL  418 (895)
T ss_pred             cCCChhhhhhhhhccccccccccC--CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHH
Confidence                                1111  01111222223566666666777766666555422111      1234467889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (727)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  642 (727)
                      .++.+|...|++.+|+.+|..+...       .....+.+|..+|.||..+|.+++|+++|++++..        .|+..
T Consensus       419 d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~  483 (895)
T KOG2076|consen  419 DLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNL  483 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCch
Confidence            9999999999999999999887753       12234679999999999999999999999999999        89999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIRE-EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                      ++...|+.++..+|+.++|.+.+++...--. ..-+...+...........+|...|+.++=+ .....++.
T Consensus       484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~  554 (895)
T KOG2076|consen  484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVD  554 (895)
T ss_pred             hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence            9999999999999999999988887541000 0000112334567788899999999999876 55544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.87  E-value=2.8e-19  Score=188.24  Aligned_cols=355  Identities=15%  Similarity=0.106  Sum_probs=276.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004848          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (727)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (727)
                      +..++..|+..+..|++++|...+.++++.        +|....+|+.||.+|..+|+.+++..++-.|-.+.|...   
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---  207 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---  207 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---
Confidence            445788899999999999999999999999        899999999999999999999999999988877776654   


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004848          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (727)
Q Consensus       388 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (727)
                           ..|..++.....+|++.+|.-+|.+|+..      .|......+..+.+|.++|++..|...|.+++......  
T Consensus       208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~--  274 (895)
T KOG2076|consen  208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV--  274 (895)
T ss_pred             -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence                 35999999999999999999999999863      55557788899999999999999999999999882100  


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--
Q 004848          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK--  545 (727)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  545 (727)
                       +...........+..+...++-+.|++.++.++......       .....++.++.++....+++.|.........  
T Consensus       275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~  346 (895)
T KOG2076|consen  275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRE  346 (895)
T ss_pred             -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence             001222333445778888888899999999998843221       1233466788999999999999888766555  


Q ss_pred             --------------------HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004848          546 --------------------IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ  605 (727)
Q Consensus       546 --------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  605 (727)
                                          +.+-..+....+..+...++.+..+.++..+++..+..--..       .+......+..
T Consensus       347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d  419 (895)
T KOG2076|consen  347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLD  419 (895)
T ss_pred             cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHH
Confidence                                111111111222223556666666777777776655432221       13345678999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848          606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD  685 (727)
Q Consensus       606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~  685 (727)
                      ++.++...|++.+|+.+|..+...      + ......+|+.+|.||..+|.+++|+++|++++.+        .|++.+
T Consensus       420 ~a~al~~~~~~~~Al~~l~~i~~~------~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D  484 (895)
T KOG2076|consen  420 LADALTNIGKYKEALRLLSPITNR------E-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD  484 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhcC------c-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence            999999999999999999998764      1 1223568999999999999999999999999987        699999


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          686 EKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       686 ~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +...|+.+|..+|+.++|. +.++....-|+.
T Consensus       485 ~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D~~  515 (895)
T KOG2076|consen  485 ARITLASLYQQLGNHEKAL-ETLEQIINPDGR  515 (895)
T ss_pred             hhhhHHHHHHhcCCHHHHH-HHHhcccCCCcc
Confidence            9999999999999999999 988887744433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.3e-19  Score=178.39  Aligned_cols=418  Identities=17%  Similarity=0.174  Sum_probs=297.7

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHHh-c-----CCC----CCHHHHHHHHHHHHHHHHcCChhH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAK------SFEIG-A-----NGK----PSLELVMCLHVIAAIYCSLGQYNE  283 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~------~~~~~-~-----~~~----~~~~~~~~~~~la~~~~~~g~~~~  283 (727)
                      .....+..+.++....+ |++|+....++-.      .+++. .     +..    +..-....++..|.+|..+.++++
T Consensus        81 d~~cryL~~~~l~~lk~-~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~  159 (611)
T KOG1173|consen   81 DIACRYLAAKCLVKLKE-WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREE  159 (611)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHH
Confidence            34455666777777766 7777766653210      01111 0     000    011123345567889999999999


Q ss_pred             HHHHHHHhcccchhccCccchHHHHHHHHHHH-HHHHHhCCHH------HHHHHHHHHHHHHH-H-------HhCC----
Q 004848          284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLG-DTYAMLGQLE------NSLMCYTTGLEVQK-Q-------VLGE----  344 (727)
Q Consensus       284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~------~A~~~~~~al~~~~-~-------~~~~----  344 (727)
                      |...|.+|+.........-..  .+..++..+ ..+......+      +=.+..+...++.. +       +..+    
T Consensus       160 ar~~Y~~Al~~D~~c~Ea~~~--lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl  237 (611)
T KOG1173|consen  160 ARDKYKEALLADAKCFEAFEK--LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL  237 (611)
T ss_pred             HHHHHHHHHhcchhhHHHHHH--HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence            999999999875221111000  001111111 1111111101      11111111111110 0       0000    


Q ss_pred             -CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          345 -TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (727)
Q Consensus       345 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  423 (727)
                       .-..........+..++..++|.+..+.+...++..|-...       ..-..+| ++...|+..+-...-.+.+    
T Consensus       238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~-------~~~~~ia-~l~el~~~n~Lf~lsh~LV----  305 (611)
T KOG1173|consen  238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP-------CLPLHIA-CLYELGKSNKLFLLSHKLV----  305 (611)
T ss_pred             hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc-------hHHHHHH-HHHHhcccchHHHHHHHHH----
Confidence             01234567778899999999999999999999998876543       2234455 7777777654443333332    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                        ...|..+..|+.+|..|...|++.+|..+|-++..+        ++..+.+|...|..+...|+.++|+..|..|-++
T Consensus       306 --~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl  375 (611)
T KOG1173|consen  306 --DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL  375 (611)
T ss_pred             --HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence              356777789999999999999999999999999998        8999999999999999999999999999999999


Q ss_pred             HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (727)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (727)
                      +...    ..|     ...+|.-|..+++++-|..+|.+|+.+.|..+       .++..+|.+.+..+.|.+|..+|+.
T Consensus       376 ~~G~----hlP-----~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-------lv~~Elgvvay~~~~y~~A~~~f~~  439 (611)
T KOG1173|consen  376 MPGC----HLP-----SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-------LVLHELGVVAYTYEEYPEALKYFQK  439 (611)
T ss_pred             ccCC----cch-----HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-------hhhhhhhheeehHhhhHHHHHHHHH
Confidence            6543    333     45689999999999999999999999988763       6788999999999999999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      ++...+....... .....+.+||-++.+++.+++|+.+|++++.+        .|..+.++..+|.+|..+|+++.|++
T Consensus       440 ~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid  510 (611)
T KOG1173|consen  440 ALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAID  510 (611)
T ss_pred             HHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHH
Confidence            9988777766654 56778999999999999999999999999999        89999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (727)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (727)
                      +|.+++.+        .|++..+-..|+.+..
T Consensus       511 ~fhKaL~l--------~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  511 HFHKALAL--------KPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHhc--------CCccHHHHHHHHHHHH
Confidence            99999987        4666555555554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=4e-18  Score=189.77  Aligned_cols=418  Identities=11%  Similarity=-0.039  Sum_probs=307.8

Q ss_pred             CCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848          193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA  272 (727)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la  272 (727)
                      .+-....+|++..|++.+.++...+|.....+..++..+...|+ +++|+.++++++.         +.+.....+..+|
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~---------p~n~~~~~llalA  109 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQS---------SMNISSRGLASAA  109 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhcc---------CCCCCHHHHHHHH
Confidence            33445667888888889999999999986555588888888897 8999999999871         2223345566668


Q ss_pred             HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004848          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (727)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (727)
                      .+|...|+|++|+++|+++++..     ++.+.    ++..++.+|...++.++|+..+++++..        +|.....
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~d-----P~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~~  172 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKD-----PTNPD----LISGMIMTQADAGRGGVVLKQATELAER--------DPTVQNY  172 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-----CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHHH
Confidence            89999999999999999999886     44443    3667899999999999999999999888        5664333


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH-----------------
Q 004848          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL-----------------  415 (727)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~-----------------  415 (727)
                       ..++.++...++..+|+..++++++..|....        .+..+..+....|-...|++..                 
T Consensus       173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~  243 (822)
T PRK14574        173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEE--------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER  243 (822)
T ss_pred             -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence             55566666677887799999999998876542        2333333333333322222221                 


Q ss_pred             ------------------------HHHH----HHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          416 ------------------------VLAS----MTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (727)
Q Consensus       416 ------------------------~~al----~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (727)
                                              ++++    .+....+..    +....+....-.++...|++.+++..|+.....  
T Consensus       244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~--  321 (822)
T PRK14574        244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE--  321 (822)
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc--
Confidence                                    1111    111111121    233445555666777888999999888866543  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (727)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (727)
                           ..+.-..+....|..|...++.++|+.+|..++.-.....   ..+........|...|...+++++|..++++.
T Consensus       322 -----~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~---~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~  393 (822)
T PRK14574        322 -----GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF---RNSDDLLDADDLYYSLNESEQLDKAYQFAVNY  393 (822)
T ss_pred             -----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc---CCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence                 1233345778889999999999999999999876532110   11122333467888999999999999999999


Q ss_pred             HHHHHh-C-------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004848          544 LKIYND-A-------PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (727)
Q Consensus       544 l~~~~~-~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  615 (727)
                      .+..+- .       ....+........++.++...|++.+|++.+++.+...        |....++..+|.++..+|.
T Consensus       394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDL  465 (822)
T ss_pred             HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence            874441 0       12234556778889999999999999999999997752        3356788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      +.+|+..++.++.+        +|+...+...+|.++..+|++.+|......+++..
T Consensus       466 p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        466 PRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            99999999998888        89999999999999999999999999999999874

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.86  E-value=9.1e-18  Score=192.14  Aligned_cols=375  Identities=15%  Similarity=0.139  Sum_probs=290.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc
Q 004848          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (727)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (727)
                      +..+...+...|. ..+|+.+|....         .++   ...|..+-..|...|++++|..+|+++.+..     .. 
T Consensus       409 ~~~li~~~~~~g~-~~eAl~lf~~M~---------~pd---~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----l~-  469 (1060)
T PLN03218        409 HAKFFKACKKQRA-VKEAFRFAKLIR---------NPT---LSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----LK-  469 (1060)
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHcC---------CCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CC-
Confidence            3344455667776 777777665432         133   4568888889999999999999999987652     11 


Q ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (727)
Q Consensus       304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (727)
                        ....+|..+...|.+.|++++|..+|+++.+..      -.| ...+|..+...|.+.|++++|+.+|.+.....-. 
T Consensus       470 --pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-  539 (1060)
T PLN03218        470 --ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-  539 (1060)
T ss_pred             --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-
Confidence              123458889999999999999999999987651      123 4578899999999999999999999988654311 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (727)
Q Consensus       384 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (727)
                         +.   ..+|..+...|...|++++|.++|.+....  ..+..|+ ..+|..+...|.+.|++++|.++|+++.+.  
T Consensus       540 ---PD---~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~--  608 (1060)
T PLN03218        540 ---PD---RVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY--  608 (1060)
T ss_pred             ---CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence               11   357999999999999999999999877532  1122333 457788889999999999999999988765  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (727)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (727)
                           +.+....+|..+...|.+.|++++|+.+|.+....      +.. |+ ..+|..+...|...|++++|..++..+
T Consensus       609 -----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~-PD-~~TynsLI~a~~k~G~~eeA~~l~~eM  675 (1060)
T PLN03218        609 -----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVK-PD-EVFFSALVDVAGHAGDLDKAFEILQDA  675 (1060)
T ss_pred             -----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                 23445678999999999999999999999998765      211 22 457888999999999999999999998


Q ss_pred             HHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004848          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (727)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  623 (727)
                      .+.     +..+. ..+|..+...|.+.|++++|..+|++....    +. .+  ...+|+.|...|.+.|++++|+++|
T Consensus       676 ~k~-----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~P--dvvtyN~LI~gy~k~G~~eeAlelf  742 (1060)
T PLN03218        676 RKQ-----GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RP--TVSTMNALITALCEGNQLPKALEVL  742 (1060)
T ss_pred             HHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            754     22222 357889999999999999999999987542    11 12  2467999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      ++....     +. .|+.. +|..+...+.+.|++++|..++.++++.
T Consensus       743 ~eM~~~-----Gi-~Pd~~-Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        743 SEMKRL-----GL-CPNTI-TYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHc-----CC-CCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            997653     21 45544 7778889999999999999999998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.85  E-value=1.1e-18  Score=197.92  Aligned_cols=372  Identities=15%  Similarity=0.079  Sum_probs=288.3

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (727)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (727)
                      .|+ ...+..+...|.+.|+ +++|.++|++..         .++   ..+|..+...|.+.|++++|+.+|++.+....
T Consensus       155 ~~~-~~~~n~Li~~y~k~g~-~~~A~~lf~~m~---------~~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~  220 (697)
T PLN03081        155 EPD-QYMMNRVLLMHVKCGM-LIDARRLFDEMP---------ERN---LASWGTIIGGLVDAGNYREAFALFREMWEDGS  220 (697)
T ss_pred             Ccc-hHHHHHHHHHHhcCCC-HHHHHHHHhcCC---------CCC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence            343 5567778889999997 888877777652         122   45688899999999999999999999875421


Q ss_pred             hccCccch------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 004848          297 IEEGQEHA------------------------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (727)
Q Consensus       297 ~~~~~~~~------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (727)
                      .   ++..                              .....++..|...|.+.|++++|...|++..           
T Consensus       221 ~---p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------  286 (697)
T PLN03081        221 D---AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------  286 (697)
T ss_pred             C---CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------
Confidence            0   1000                              0012235677889999999999999987642           


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      +....+|..+...|.+.|++++|+.+|++.....-.    +.   ..++..+...|...|++++|.+.+...++.    +
T Consensus       287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~----pd---~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g  355 (697)
T PLN03081        287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS----ID---QFTFSIMIRIFSRLALLEHAKQAHAGLIRT----G  355 (697)
T ss_pred             CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CC---HHHHHHHHHHHHhccchHHHHHHHHHHHHh----C
Confidence            234578999999999999999999999988653211    11   246889999999999999999999877642    2


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      . +....++..+...|.+.|++++|...|++..+          + ...+|..+...|.+.|+.++|+.+|++....   
T Consensus       356 ~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~---  420 (697)
T PLN03081        356 F-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE---  420 (697)
T ss_pred             C-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            2 22345778899999999999999999987632          2 3468999999999999999999999998765   


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                         +.. |+ ..++..+...+...|..++|..+|+...+..    +..+. ...|..+..+|.+.|++++|.+++++.  
T Consensus       421 ---g~~-Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~--  488 (697)
T PLN03081        421 ---GVA-PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RIKPR-AMHYACMIELLGREGLLDEAYAMIRRA--  488 (697)
T ss_pred             ---CCC-CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCC-ccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence               211 22 4568888889999999999999999887643    22222 246788999999999999999887653  


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                           ... +  ...+|..+...+...|+++.|...+++.+++        .|+....|..|+.+|...|++++|.+.++
T Consensus       489 -----~~~-p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        489 -----PFK-P--TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             -----CCC-C--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence                 111 1  2457899999999999999999999998876        67767789999999999999999999999


Q ss_pred             HHHH
Q 004848          667 FVVG  670 (727)
Q Consensus       667 ~al~  670 (727)
                      ...+
T Consensus       553 ~m~~  556 (697)
T PLN03081        553 TLKR  556 (697)
T ss_pred             HHHH
Confidence            8764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.1e-17  Score=157.76  Aligned_cols=422  Identities=12%  Similarity=0.042  Sum_probs=305.4

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIG-----------ANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~-----------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  289 (727)
                      ...+..+....+.... |..|...|..++..-...           ....+.+.........+.||...++-+.|+..+.
T Consensus        43 yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~  121 (564)
T KOG1174|consen   43 YQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL  121 (564)
T ss_pred             HHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence            3344444444444443 666666666666543211           0111223445556778999999999999999888


Q ss_pred             HhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--------------------------hC
Q 004848          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV--------------------------LG  343 (727)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~  343 (727)
                      ......      ..|.    ..+.++..+..-++..++.-.|...+..+.-.                          ..
T Consensus       122 ~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~  191 (564)
T KOG1174|consen  122 QVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVP  191 (564)
T ss_pred             cCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecC
Confidence            776542      1221    24455666665555545554444443321110                          01


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (727)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  423 (727)
                      +..+....-...+|.++....-+.-+..++-+-....+.+        ...+..+|.+++..|++.+|+..|+++..   
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---  260 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLC---  260 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhh---
Confidence            1112222222334444444444444445554444444433        35588899999999999999999998864   


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                         .+|......-..|.++...|+++.-..+....+.+        ......-|+.-+.+.+...++..|+.+-+++++.
T Consensus       261 ---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~  329 (564)
T KOG1174|consen  261 ---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS  329 (564)
T ss_pred             ---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence               46777788888899999999999887777777766        3445666777788899999999999999999998


Q ss_pred             HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (727)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (727)
                               .+....++...|.++..+|+.++|+-.|+.|..+.|-.       ..+|..|-.+|...|.+.+|......
T Consensus       330 ---------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  330 ---------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             ---------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHHHH
Confidence                     33446788899999999999999999999999987654       47899999999999999999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHH-HHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHH
Q 004848          584 AISKLRAIGERKSAFFGVALNQMG-LACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA  661 (727)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  661 (727)
                      ++..+..        .+.++..+| .++. .----++|.+++++++.+        .|....+-..+|.++...|.++++
T Consensus       394 ~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~  457 (564)
T KOG1174|consen  394 TIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDI  457 (564)
T ss_pred             HHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchH
Confidence            8887643        345666665 3433 333458999999999999        999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.++++++..+        |+ ...+..||.++...+.+.+|. .+|..||.+||+
T Consensus       458 i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~  503 (564)
T KOG1174|consen  458 IKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCcc
Confidence            99999999863        33 457889999999999999999 999999999997

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.2e-17  Score=166.85  Aligned_cols=428  Identities=17%  Similarity=0.175  Sum_probs=295.8

Q ss_pred             cccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004848          197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC  276 (727)
Q Consensus       197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~  276 (727)
                      ....|+|..++..+.++...+|.+...+-++..++...|+ |++|++-..+.+++.         |+++..|..+|..+.
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~---------p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN---------PDWAKGYSRKGAALF   81 (539)
T ss_pred             hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC---------CchhhHHHHhHHHHH
Confidence            3456778888888899999999999999999999999998 999999988888764         678899999999999


Q ss_pred             HcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC---------------------CHHHHHHHHHHHH
Q 004848          277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---------------------QLENSLMCYTTGL  335 (727)
Q Consensus       277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al  335 (727)
                      -+|+|++|+..|.+.|+..     +...    ..+..|+.++....                     ++--....|...+
T Consensus        82 ~lg~~~eA~~ay~~GL~~d-----~~n~----~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l  152 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKD-----PSNK----QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL  152 (539)
T ss_pred             hcccHHHHHHHHHHHhhcC-----CchH----HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence            9999999999999999985     2222    12555555552110                     0111112233333


Q ss_pred             HHHHHHhCCCCchHHHHHHH-------HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC------------C------CHH
Q 004848          336 EVQKQVLGETDPRVGETCRY-------LAEAHVQALQFSEAQKFCQMALDIHKDNGSP------------A------SLE  390 (727)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~------~~~  390 (727)
                      +..++     .|.....+.+       ++.+.. .+..    ..+.......+....+            +      ...
T Consensus       153 ~~~~~-----~p~~l~~~l~d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~  222 (539)
T KOG0548|consen  153 EIIQK-----NPTSLKLYLNDPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKE  222 (539)
T ss_pred             HHhhc-----CcHhhhcccccHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHH
Confidence            33222     1211111111       111000 0000    0000000000000000            0      111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (727)
Q Consensus       391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (727)
                      .+.....+|...+...++..|+++|.+++.+.       .....+.+.+-+|+..|.+.+.+..+..+++....... +.
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~  294 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DY  294 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HH
Confidence            34567789999999999999999999998753       44556788899999999999999998888876433211 12


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      ...+.++..+|..|...++++.|+.+|++++...+.                 ..+.......++++.......-+.+..
T Consensus       295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~  357 (539)
T KOG0548|consen  295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERKAYINPEK  357 (539)
T ss_pred             HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHHHhhChhH
Confidence            235566666888999999999999999998877433                 233344445555555554433332222


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                             +.-...-|..++..|+|..|+.+|.+++..        .+..+..|.+.|.||..+|.+..|+...+.++++ 
T Consensus       358 -------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-  421 (539)
T KOG0548|consen  358 -------AEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-  421 (539)
T ss_pred             -------HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence                   444556699999999999999999998875        2446789999999999999999999999999998 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                             +|....+|..-|.++..+.+|++|++.|+++++.        +|....+...+..++..+....... +..+.
T Consensus       422 -------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~e-e~~~r  485 (539)
T KOG0548|consen  422 -------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPE-ETKRR  485 (539)
T ss_pred             -------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHH-HHHHh
Confidence                   8999999999999999999999999999999976        6888888888888887754444444 44554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.84  E-value=1.9e-17  Score=155.48  Aligned_cols=333  Identities=15%  Similarity=0.121  Sum_probs=237.2

Q ss_pred             CCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (727)
Q Consensus       260 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  339 (727)
                      .++..+.-...+|..++..|++..|+..|..|++..     +    ....+++..|.+|..+|+-.-|+.-+.+++++  
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--  101 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----P----NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--  101 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----c----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence            345556678889999999999999999999999885     2    23446889999999999999999999999999  


Q ss_pred             HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS  419 (727)
Q Consensus       340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al  419 (727)
                            .|+...+....|.+++++|++++|..-|..+|...+.....     -.+...++.+                  
T Consensus       102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~------------------  152 (504)
T KOG0624|consen  102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALI------------------  152 (504)
T ss_pred             ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhH------------------
Confidence                  79999999999999999999999999999999877655321     0011111110                  


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (727)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (727)
                                .....+......++..|++..|+.+....+++        .|..+..+...+.+|...|+...|+.-+..
T Consensus       153 ----------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~  214 (504)
T KOG0624|consen  153 ----------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQ  214 (504)
T ss_pred             ----------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                      01122333445566778888888888888887        688888888888888888888888888888


Q ss_pred             HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccH---HHH--HHHHHHHHHHcCCH
Q 004848          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV---AGI--EAQMGVMYYMLGNY  574 (727)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~--~~~la~~~~~~g~~  574 (727)
                      +-++.         .+....++.++.+++..|+.+.++...++++++.++.....+..   -.+  ...-+......++|
T Consensus       215 askLs---------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~  285 (504)
T KOG0624|consen  215 ASKLS---------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW  285 (504)
T ss_pred             HHhcc---------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            87772         22356678888888888888888888888888766541110000   000  00112223345566


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (727)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (727)
                      .+++...++.++.-    +............+..|+..-|++.+|+....+++++        +|+.+.++...|.+|..
T Consensus       286 t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  286 TECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HHHHHHHHHHHhcC----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhh
Confidence            66666666555431    1112222344556677777778888888888888887        78888888888888888


Q ss_pred             cCChHHHHHHHHHHHHH
Q 004848          655 IGRLDDAIEILEFVVGI  671 (727)
Q Consensus       655 ~g~~~~A~~~~~~al~~  671 (727)
                      ...|+.|+.-|++|.+.
T Consensus       354 dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  354 DEMYDDAIHDYEKALEL  370 (504)
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            88888888888888765

>PLN03077 Protein ECB2; Provisional

Probab=99.83  E-value=2.3e-17  Score=191.96  Aligned_cols=427  Identities=14%  Similarity=0.057  Sum_probs=276.3

Q ss_pred             cccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH------------------------
Q 004848          197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF------------------------  252 (727)
Q Consensus       197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~------------------------  252 (727)
                      +.+.|+...|...+.+....+   ...|..+...|.+.|+ +++|+++|.+....-                        
T Consensus       232 y~k~g~~~~A~~lf~~m~~~d---~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a  307 (857)
T PLN03077        232 YVKCGDVVSARLVFDRMPRRD---CISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG  307 (857)
T ss_pred             HhcCCCHHHHHHHHhcCCCCC---cchhHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence            344455555554555544332   3467777888999997 999999988865420                        


Q ss_pred             ----HHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHH
Q 004848          253 ----EIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL  328 (727)
Q Consensus       253 ----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  328 (727)
                          .......-.| ....+..+...|.+.|++++|..+|++....            ...+|..+...|.+.|++++|+
T Consensus       308 ~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------d~~s~n~li~~~~~~g~~~~A~  374 (857)
T PLN03077        308 REMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK------------DAVSWTAMISGYEKNGLPDKAL  374 (857)
T ss_pred             HHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCC------------CeeeHHHHHHHHHhCCCHHHHH
Confidence                0000000001 1334566667777777777777777765421            1123666777777777777777


Q ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCH
Q 004848          329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH  408 (727)
Q Consensus       329 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~  408 (727)
                      .+|++..+..      -.|+. .++..+-..+...|++++|.+++..+++......       ..++..+...|.+.|++
T Consensus       375 ~lf~~M~~~g------~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~-------~~~~n~Li~~y~k~g~~  440 (857)
T PLN03077        375 ETYALMEQDN------VSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISY-------VVVANALIEMYSKCKCI  440 (857)
T ss_pred             HHHHHHHHhC------CCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHcCCH
Confidence            7777664431      01222 3344444456666777777776666654322111       24567777888888888


Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--------------
Q 004848          409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA--------------  474 (727)
Q Consensus       409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------  474 (727)
                      ++|.+.|++..        .+ ....|..+...|...|++++|+..|++.+..    .   .|+..              
T Consensus       441 ~~A~~vf~~m~--------~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~---~pd~~t~~~lL~a~~~~g~  504 (857)
T PLN03077        441 DKALEVFHNIP--------EK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----L---KPNSVTLIAALSACARIGA  504 (857)
T ss_pred             HHHHHHHHhCC--------CC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----C---CCCHhHHHHHHHHHhhhch
Confidence            88888887542        11 2246777778888888888888888877531    1   12211              


Q ss_pred             --------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHH
Q 004848          475 --------------------SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (727)
Q Consensus       475 --------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (727)
                                          .++..|...|.+.|++++|...|+..    ..         ...+|+.+...|...|+.+
T Consensus       505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~  571 (857)
T PLN03077        505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGS  571 (857)
T ss_pred             HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHH
Confidence                                12233446677777777777776653    11         2456888888888999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC
Q 004848          535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (727)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  614 (727)
                      +|+.+|++..+.     +..+. ..++..+-..+.+.|++++|..+|+...+..   + ..+  ....|..+..++.+.|
T Consensus       572 ~A~~lf~~M~~~-----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---g-i~P--~~~~y~~lv~~l~r~G  639 (857)
T PLN03077        572 MAVELFNRMVES-----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY---S-ITP--NLKHYACVVDLLGRAG  639 (857)
T ss_pred             HHHHHHHHHHHc-----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh---C-CCC--chHHHHHHHHHHHhCC
Confidence            999998887653     21211 1345556667888899999999888776432   1 111  2367888888999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      ++++|.+++++.- +        .|+. .+|..|-..+...|+.+.|....++++++        .|+....+..|+.+|
T Consensus       640 ~~~eA~~~~~~m~-~--------~pd~-~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~y  701 (857)
T PLN03077        640 KLTEAYNFINKMP-I--------TPDP-AVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLY  701 (857)
T ss_pred             CHHHHHHHHHHCC-C--------CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHH
Confidence            9999988887752 2        4553 46677777778888888888888888776        577788899999999


Q ss_pred             HHhCChhHHHHHHHHHHHHH
Q 004848          695 KEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       695 ~~~g~~~~A~~~~l~~al~~  714 (727)
                      ...|++++|. +..+...+.
T Consensus       702 a~~g~~~~a~-~vr~~M~~~  720 (857)
T PLN03077        702 ADAGKWDEVA-RVRKTMREN  720 (857)
T ss_pred             HHCCChHHHH-HHHHHHHHc
Confidence            9999999999 877766554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.82  E-value=7.1e-16  Score=182.02  Aligned_cols=421  Identities=15%  Similarity=0.059  Sum_probs=306.4

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (727)
                      ....+...+..+...|+ +.+|+.++..+-.          .......+...+..+...|++..+..++..+-...    
T Consensus       340 ~~~lh~raa~~~~~~g~-~~~Al~~a~~a~d----------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----  404 (903)
T PRK04841        340 LPELHRAAAEAWLAQGF-PSEAIHHALAAGD----------AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV----  404 (903)
T ss_pred             HHHHHHHHHHHHHHCCC-HHHHHHHHHHCCC----------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----
Confidence            34455556666677776 7777776554421          13345566677888888999998888776542110    


Q ss_pred             CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                      ...++.    .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++.
T Consensus       405 ~~~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  480 (903)
T PRK04841        405 LLENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA  480 (903)
T ss_pred             HhcCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            111121    2456788888999999999999988766432110001 12345566788899999999999999999988


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      ..+..   .....+.++..+|.++...|++++|..++.+++......+.......++..+|.++...|++++|..+++++
T Consensus       481 ~~~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  557 (903)
T PRK04841        481 ELPLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA  557 (903)
T ss_pred             cCCCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            53321   222344567889999999999999999999999888877766666778899999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (727)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (727)
                      +.+.....+...+.....+..+|.++...|++++|...+.+++.+.....    .......+..++.++...|++++|..
T Consensus       558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~  633 (903)
T PRK04841        558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARR  633 (903)
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99988765443444555677889999999999999999999999876531    22345677789999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHH
Q 004848          539 LLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN  617 (727)
Q Consensus       539 ~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  617 (727)
                      .+.++..+.... +... ............+...|+.+.|..++......    ...........+..++.++...|+++
T Consensus       634 ~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~  708 (903)
T PRK04841        634 YLNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFD  708 (903)
T ss_pred             HHHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHH
Confidence            999999876654 2111 11111111234556688999988887664431    00111112334567899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      +|..++++++........  ....+.++..+|.++...|+.++|...+.+++.+..
T Consensus       709 ~A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        709 EAEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            999999999998665433  345667889999999999999999999999999864

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.80  E-value=1.1e-16  Score=166.20  Aligned_cols=413  Identities=15%  Similarity=0.109  Sum_probs=306.2

Q ss_pred             ccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHcCChh
Q 004848          204 LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSL-ELVMCLHVIAAIYCSLGQYN  282 (727)
Q Consensus       204 ~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~  282 (727)
                      ....+.|++....--.....|...+..+...|. -..|+.+.+..+..       .+.| +....+..-..|+.+.+.++
T Consensus       340 ~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~-------~~~ps~~s~~Lmasklc~e~l~~~e  411 (799)
T KOG4162|consen  340 EVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKK-------SEQPSDISVLLMASKLCIERLKLVE  411 (799)
T ss_pred             HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhccc-------ccCCCcchHHHHHHHHHHhchhhhh
Confidence            344456666666667778889999999999997 56666665555543       2222 22334444456667789999


Q ss_pred             HHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004848          283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-----------QLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (727)
Q Consensus       283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (727)
                      +++.|..+++......    .......++..+|.+|..+-           ...++++.+++|++.        +|....
T Consensus       412 egldYA~kai~~~~~~----~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~dp~  479 (799)
T KOG4162|consen  412 EGLDYAQKAISLLGGQ----RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTDPL  479 (799)
T ss_pred             hHHHHHHHHHHHhhhh----hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCCch
Confidence            9999999999865222    22233456778888876543           245677777777777        677778


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (727)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (727)
                      +.++++.-|..+++.+.|..+.++++++.+...       +.+|..++.++...+++.+|+...+-++.....      .
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~------N  546 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGD------N  546 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh------h
Confidence            999999999999999999999999999965443       467999999999999999999999988754322      1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC--
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV--  508 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--  508 (727)
                      .........+-...++.++|+..+...+.+++...+-.. -.........+.+.....+..+|+..+.++..+.....  
T Consensus       547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~  626 (799)
T KOG4162|consen  547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS  626 (799)
T ss_pred             hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence            222223334445589999999999999999885432110 01222333334455556677777777777666543211  


Q ss_pred             -------------CCCC--hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC
Q 004848          509 -------------PGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (727)
Q Consensus       509 -------------~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (727)
                                   ++.+  .......|...+..+...++.++|..++.++-.+.+-.       +.+|+..|.++...|+
T Consensus       627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-------~~~~~~~G~~~~~~~~  699 (799)
T KOG4162|consen  627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-------ASVYYLRGLLLEVKGQ  699 (799)
T ss_pred             cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-------HHHHHHhhHHHHHHHh
Confidence                         1111  12234567788899999999999999999998887544       6889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004848          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE--LFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (727)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (727)
                      +.+|...|..|+.+.        +....+...+|.++.+.|+..-|..  ++..++++        +|....+|+.||.+
T Consensus       700 ~~EA~~af~~Al~ld--------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  700 LEEAKEAFLVALALD--------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEV  763 (799)
T ss_pred             hHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHH
Confidence            999999999999872        2234678889999999999888888  99999999        99999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHH
Q 004848          652 YDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~  672 (727)
                      +..+|+.++|.++|..|+++-
T Consensus       764 ~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  764 FKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHccchHHHHHHHHHHHhhc
Confidence            999999999999999999874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=3.8e-18  Score=159.08  Aligned_cols=284  Identities=14%  Similarity=0.132  Sum_probs=236.4

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004848          359 AHVQALQFSEAQKFCQMALDIHKDNGSP--ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (727)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (727)
                      +++..++...|-..+...+++.......  .-......-..+|.||.++|-+.+|...++.++..       ......+.
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfl  260 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFL  260 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHH
Confidence            3455566677766666666554332221  11222234567999999999999999999988752       23446778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH
Q 004848          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (727)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (727)
                      .|+.+|....+...|+..+.+.++.        .|.....+..+|.++..++++++|.++|+.+++.         ++..
T Consensus       261 lLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~---------~~~n  323 (478)
T KOG1129|consen  261 LLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL---------HPIN  323 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc---------CCcc
Confidence            8999999999999999999999987        6888999999999999999999999999999998         4555


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (727)
                      .++...+|.-|+..++.+-|+.+|++.+++--..       ...+.++|.|++..++++-++..|++|+.....     +
T Consensus       324 vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~  391 (478)
T KOG1129|consen  324 VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----P  391 (478)
T ss_pred             ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----c
Confidence            6777788899999999999999999999986555       478899999999999999999999999987543     3


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      ...+.+|+++|.+....|++.-|..+|+-++..        +++...++.+||.+-.+.|+.++|..++..|-..     
T Consensus       392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~-----  458 (478)
T KOG1129|consen  392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV-----  458 (478)
T ss_pred             chhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-----
Confidence            446789999999999999999999999999987        8999999999999999999999999999998866     


Q ss_pred             CCCChhHHHHHHHHHHHH
Q 004848          677 GTANPDVDDEKRRLAELL  694 (727)
Q Consensus       677 g~~~p~~~~~~~~La~~~  694 (727)
                         .|+..+..++|+.+-
T Consensus       459 ---~P~m~E~~~Nl~~~s  473 (478)
T KOG1129|consen  459 ---MPDMAEVTTNLQFMS  473 (478)
T ss_pred             ---CccccccccceeEEe
Confidence               577777777766543

>PLN03077 Protein ECB2; Provisional

Probab=99.80  E-value=3.1e-16  Score=182.59  Aligned_cols=428  Identities=16%  Similarity=0.098  Sum_probs=256.4

Q ss_pred             cccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCH----------------
Q 004848          199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSL----------------  262 (727)
Q Consensus       199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~----------------  262 (727)
                      +.|+...+.+.+.+...   .....|..+...+.+.|+ +++|+..|.+....-     -.|+.                
T Consensus       133 ~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~-~~~A~~~f~~M~~~g-----~~Pd~~t~~~ll~~~~~~~~~  203 (857)
T PLN03077        133 RFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGY-FDEALCLYHRMLWAG-----VRPDVYTFPCVLRTCGGIPDL  203 (857)
T ss_pred             hCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCC-HHHHHHHHHHHHHcC-----CCCChhHHHHHHHHhCCccch
Confidence            33443334434444433   234577888889999997 999999998865320     01110                


Q ss_pred             ----------------HHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHH
Q 004848          263 ----------------ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN  326 (727)
Q Consensus       263 ----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  326 (727)
                                      .....+..+...|.+.|++++|..+|++.....            ..+|..+...|.+.|++++
T Consensus       204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d------------~~s~n~li~~~~~~g~~~e  271 (857)
T PLN03077        204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD------------CISWNAMISGYFENGECLE  271 (857)
T ss_pred             hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC------------cchhHHHHHHHHhCCCHHH
Confidence                            012345667788999999999999999865321            2248888889999999999


Q ss_pred             HHHHHHHHHHHHHH----------------------------HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          327 SLMCYTTGLEVQKQ----------------------------VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       327 A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                      |+.+|.+.......                            .....-.....++..|...|.+.|++++|.++|++...
T Consensus       272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  351 (857)
T PLN03077        272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET  351 (857)
T ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence            99999887654100                            00000011223444555555555555555555554321


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      .     +      ..+|+.+...|.+.|++++|+.+|.+...    .+..|+. .++..+-..+...|++++|..++..+
T Consensus       352 ~-----d------~~s~n~li~~~~~~g~~~~A~~lf~~M~~----~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~  415 (857)
T PLN03077        352 K-----D------AVSWTAMISGYEKNGLPDKALETYALMEQ----DNVSPDE-ITIASVLSACACLGDLDVGVKLHELA  415 (857)
T ss_pred             C-----C------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHH
Confidence            0     0      12355555555566666666655554322    1222222 22333334555556666666655555


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (727)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (727)
                      ++.       .......++..|...|.+.|++++|...|++..+.            ...+|+.+...|...|++++|+.
T Consensus       416 ~~~-------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------d~vs~~~mi~~~~~~g~~~eA~~  476 (857)
T PLN03077        416 ERK-------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK------------DVISWTSIIAGLRLNNRCFEALI  476 (857)
T ss_pred             HHh-------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHCCCHHHHHH
Confidence            443       12234556777778888888888888777653211            13467777888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCccHHH-------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          539 LLQKALKIYNDAPGQQSTVAG-------------------------------IEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~-------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      +|++.+..   ...+...+..                               ++..+...|.+.|+.++|...|+..   
T Consensus       477 lf~~m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---  550 (857)
T PLN03077        477 FFRQMLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---  550 (857)
T ss_pred             HHHHHHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence            88887642   1111111100                               1123446677777777777766553   


Q ss_pred             HHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF  667 (727)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  667 (727)
                           ..    ...+|+.+...|...|+.++|+++|++..+.     +. .|+.. ++..+-..+.+.|++++|..+|+.
T Consensus       551 -----~~----d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~-~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~  614 (857)
T PLN03077        551 -----EK----DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GV-NPDEV-TFISLLCACSRSGMVTQGLEYFHS  614 (857)
T ss_pred             -----CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCcc-cHHHHHHHHhhcChHHHHHHHHHH
Confidence                 11    2457888888888999999999998887653     11 34433 455666677888888888888887


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004848          668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (727)
Q Consensus       668 al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (727)
                      .....     ...|+ ...|..+..+|.+.|++++|. +.+++.
T Consensus       615 M~~~~-----gi~P~-~~~y~~lv~~l~r~G~~~eA~-~~~~~m  651 (857)
T PLN03077        615 MEEKY-----SITPN-LKHYACVVDLLGRAGKLTEAY-NFINKM  651 (857)
T ss_pred             HHHHh-----CCCCc-hHHHHHHHHHHHhCCCHHHHH-HHHHHC
Confidence            76332     12333 356777777777777777777 766653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.79  E-value=6.4e-15  Score=173.96  Aligned_cols=423  Identities=15%  Similarity=0.036  Sum_probs=302.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (727)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (727)
                      ....+...+..+...|++.+|+.++..+-..          ......+...+..+...|++..+..++..+-...    .
T Consensus       340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~  405 (903)
T PRK04841        340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV----L  405 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----H
Confidence            3455666677788899999998877765322          1233456667888888899887777665431110    0


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (727)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  422 (727)
                      ..+|.   .....+.++...|++++|..++..+.......... .......+...++.++...|++++|..++++++...
T Consensus       406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  482 (903)
T PRK04841        406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL  482 (903)
T ss_pred             hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            11233   34567778889999999999999987765432211 112234556678899999999999999999988642


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (727)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (727)
                      .. ........++..+|.++...|++++|..++++++........  ......++..+|.++...|++++|..++++++.
T Consensus       483 ~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  559 (903)
T PRK04841        483 PL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ  559 (903)
T ss_pred             CC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            21 222334556788999999999999999999999998776542  233456788999999999999999999999999


Q ss_pred             HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (727)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (727)
                      +..... ....+.....+..+|.++...|++++|...+.+++.+.... + .......+..++.++...|++++|...+.
T Consensus       560 ~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~  636 (903)
T PRK04841        560 LIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN  636 (903)
T ss_pred             HHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            987642 11223334456778999999999999999999999987644 2 22345567789999999999999999999


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004848          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (727)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (727)
                      ++..+....... ..............+...|+.+.|..++.......   .+. .......+..++.++...|++++|.
T Consensus       637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~-~~~~~~~~~~~a~~~~~~g~~~~A~  711 (903)
T PRK04841        637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FAN-NHFLQGQWRNIARAQILLGQFDEAE  711 (903)
T ss_pred             HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Ccc-chhHHHHHHHHHHHHHHcCCHHHHH
Confidence            998876553211 11011111112344556889999988876654310   010 1112223568999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+++++...... + .......++..+|.++...|+.++|. ..+.+++++...
T Consensus       712 ~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la~~  763 (903)
T PRK04841        712 IILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCc
Confidence            9999999886543 2 23466778899999999999999999 999999988754

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.78  E-value=9.1e-15  Score=148.64  Aligned_cols=428  Identities=14%  Similarity=0.033  Sum_probs=323.3

Q ss_pred             cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004848          211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ  290 (727)
Q Consensus       211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  290 (727)
                      ..+...-|...+.|+.+++.-    - |+.|...+.+|-+.++.      ++.   +|..-+.+--..|+.+....+..+
T Consensus       400 ~rAveccp~s~dLwlAlarLe----t-YenAkkvLNkaRe~ipt------d~~---IWitaa~LEE~ngn~~mv~kii~r  465 (913)
T KOG0495|consen  400 ERAVECCPQSMDLWLALARLE----T-YENAKKVLNKAREIIPT------DRE---IWITAAKLEEANGNVDMVEKIIDR  465 (913)
T ss_pred             HHHHHhccchHHHHHHHHHHH----H-HHHHHHHHHHHHhhCCC------Chh---HHHHHHHHHHhcCCHHHHHHHHHH
Confidence            344455677777887776543    2 77777777777665432      122   233344444555555555544444


Q ss_pred             hcccchhc----------------------------------cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          291 SIEIPVIE----------------------------------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE  336 (727)
Q Consensus       291 al~~~~~~----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  336 (727)
                      ++......                                  .+.+. ......|..-+..+...+.++-|+..|..+++
T Consensus       466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe-ed~~~tw~~da~~~~k~~~~~carAVya~alq  544 (913)
T KOG0495|consen  466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE-EDRKSTWLDDAQSCEKRPAIECARAVYAHALQ  544 (913)
T ss_pred             HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc-chhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence            43321100                                  01111 11234577778888889999999999999999


Q ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV  416 (727)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~  416 (727)
                      .        .|..-.+|...+.+-..-|..+.-..++++++...|+..        ..|...+..+...|+...|...+.
T Consensus       545 v--------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae--------~lwlM~ake~w~agdv~~ar~il~  608 (913)
T KOG0495|consen  545 V--------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE--------ILWLMYAKEKWKAGDVPAARVILD  608 (913)
T ss_pred             h--------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch--------hHHHHHHHHHHhcCCcHHHHHHHH
Confidence            8        577778888888888888999999999999999887654        347777888899999999999998


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004848          417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY  496 (727)
Q Consensus       417 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  496 (727)
                      ++...      .|..-.+|+.--.+.+...+++.|..+|.++...         .....+|+.-+.+...+++.++|+.+
T Consensus       609 ~af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  609 QAFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             HHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence            88753      4445567777777888899999999999998775         44568888889999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHH
Q 004848          497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD  576 (727)
Q Consensus       497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  576 (727)
                      ++++++.+         |.....|..+|+++..+++.+.|.+.|...++.+|..       ...|..++.+-.+.|+.-.
T Consensus       674 lEe~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------ipLWllLakleEk~~~~~r  737 (913)
T KOG0495|consen  674 LEEALKSF---------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------IPLWLLLAKLEEKDGQLVR  737 (913)
T ss_pred             HHHHHHhC---------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------chHHHHHHHHHHHhcchhh
Confidence            99999994         4567889999999999999999999999988887766       3578889999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc--------CCC-----------
Q 004848          577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC--------GPY-----------  637 (727)
Q Consensus       577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~-----------  637 (727)
                      |...++++.-.        .+.....|....++-++.|+.+.|..+..+|++-+....        -..           
T Consensus       738 AR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA  809 (913)
T KOG0495|consen  738 ARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA  809 (913)
T ss_pred             HHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence            99999887643        222456777777888899999999999999887533210        000           


Q ss_pred             ---CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          638 ---HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       638 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                         ......++..+|.++....++++|.++|.+++.+        +|++.+++..+-..+...|.-++-. +.|.+....
T Consensus       810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~k-ev~~~c~~~  880 (913)
T KOG0495|consen  810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQK-EVLKKCETA  880 (913)
T ss_pred             HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHH-HHHHHHhcc
Confidence               1112346778899999999999999999999987        6888999999999999999999988 999999888


Q ss_pred             hhh
Q 004848          715 NSR  717 (727)
Q Consensus       715 ~p~  717 (727)
                      .|.
T Consensus       881 EP~  883 (913)
T KOG0495|consen  881 EPT  883 (913)
T ss_pred             CCC
Confidence            886

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.78  E-value=2.6e-15  Score=141.19  Aligned_cols=327  Identities=15%  Similarity=0.097  Sum_probs=238.5

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 004848          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (727)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  294 (727)
                      ..+|..+.-.+.+|..++..|+ +..|+..|..|++.         +|....+++..|.+|..+|+-.-|+..+.+++++
T Consensus        32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~---------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel  101 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEG---------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL  101 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcC---------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence            3567788889999999999998 99999999999874         3667888999999999999999999999999998


Q ss_pred             chhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHHHHhcCHHHHHH
Q 004848          295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR---VGETCRYLAEAHVQALQFSEAQK  371 (727)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~  371 (727)
                      .     ++    ...+....|.++.++|.+++|..-|..+++.        +|.   ..+++..++.+-.          
T Consensus       102 K-----pD----F~~ARiQRg~vllK~Gele~A~~DF~~vl~~--------~~s~~~~~eaqskl~~~~e----------  154 (504)
T KOG0624|consen  102 K-----PD----FMAARIQRGVVLLKQGELEQAEADFDQVLQH--------EPSNGLVLEAQSKLALIQE----------  154 (504)
T ss_pred             C-----cc----HHHHHHHhchhhhhcccHHHHHHHHHHHHhc--------CCCcchhHHHHHHHHhHHH----------
Confidence            6     22    3345788999999999999999999999987        342   2222222221100          


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004848          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (727)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (727)
                                          -..+......+...|++..|+++....+.      ..|..+..+...+.||...|+...|
T Consensus       155 --------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llE------i~~Wda~l~~~Rakc~i~~~e~k~A  208 (504)
T KOG0624|consen  155 --------------------HWVLVQQLKSASGSGDCQNAIEMITHLLE------IQPWDASLRQARAKCYIAEGEPKKA  208 (504)
T ss_pred             --------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHh------cCcchhHHHHHHHHHHHhcCcHHHH
Confidence                                01133344455566777777777776654      3456666777777788888888888


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH--------
Q 004848          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV--------  523 (727)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--------  523 (727)
                      +..++.+-++        ..+....++.++.+++..|+.+.++...++++++      ..++..-...|-.+        
T Consensus       209 I~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl------dpdHK~Cf~~YKklkKv~K~le  274 (504)
T KOG0624|consen  209 IHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL------DPDHKLCFPFYKKLKKVVKSLE  274 (504)
T ss_pred             HHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc------CcchhhHHHHHHHHHHHHHHHH
Confidence            7777777666        5566677777777888888887777777777776      22232222222222        


Q ss_pred             -HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHH
Q 004848          524 -SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (727)
Q Consensus       524 -a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (727)
                       +.-....++|.++++..++.++..+..   ..........+..|+...|++.+|+....+++++        .+..+.+
T Consensus       275 s~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~  343 (504)
T KOG0624|consen  275 SAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQV  343 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHH
Confidence             223345567777777777776654432   1222334556788899999999999999999986        3345789


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      +...|.+|+....|+.|+.-|++|.+.
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=155.94  Aligned_cols=283  Identities=16%  Similarity=0.125  Sum_probs=235.8

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004848          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD  394 (727)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~  394 (727)
                      +|+...+...|-......+++...........  .......+|.||+.+|-+.+|.+.++.++...+-.         ..
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---------dT  258 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---------DT  258 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch---------hH
Confidence            45556667777666666666654432222222  22334678999999999999999999999876433         46


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (727)
Q Consensus       395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (727)
                      +..|+.+|.+..+...|+..|.+.+.      ..|.....+..++.++..++++++|.++|+.+++.        ++...
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gld------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv  324 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGLD------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV  324 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhhh------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence            88999999999999999999988864      46777888899999999999999999999999998        88888


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      .+.-.+|.-|+..++.+-|+.+|++.+.+      |...   .+.+.++|.+.+..++++-++..|++|+.....    +
T Consensus       325 EaiAcia~~yfY~~~PE~AlryYRRiLqm------G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~----~  391 (478)
T KOG1129|consen  325 EAIACIAVGYFYDNNPEMALRYYRRILQM------GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ----P  391 (478)
T ss_pred             eeeeeeeeccccCCChHHHHHHHHHHHHh------cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC----c
Confidence            99889999999999999999999999999      3333   457899999999999999999999999988643    3


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004848          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (727)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (727)
                      ...+.+|+++|.+....|++.-|..+|+-++.-        +...+.++++||.+..+.|+.++|..++..|-..     
T Consensus       392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~-----  458 (478)
T KOG1129|consen  392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV-----  458 (478)
T ss_pred             chhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-----
Confidence            345789999999999999999999999988863        4456899999999999999999999999999988     


Q ss_pred             CCCCccHHHHHHHHHHH
Q 004848          635 GPYHPDTLGVYSNLAGT  651 (727)
Q Consensus       635 ~~~~~~~~~~~~~la~~  651 (727)
                         .|+..+..++++.+
T Consensus       459 ---~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  459 ---MPDMAEVTTNLQFM  472 (478)
T ss_pred             ---CccccccccceeEE
Confidence               78877777776654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.3e-15  Score=145.08  Aligned_cols=289  Identities=12%  Similarity=0.094  Sum_probs=238.4

Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 004848          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (727)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  425 (727)
                      -+.....+..+|.+++..|++++|+..|+++.-+.|...        ...-..|.++...|++++-..+....+.+    
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~----  295 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------EAMDLYAVLLGQEGGCEQDSALMDYLFAK----  295 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------hhHHHHHHHHHhccCHhhHHHHHHHHHhh----
Confidence            477889999999999999999999999999998876653        44667788888999998877665544432    


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                        ....+.-|+.-+...+...++..|+.+-++++..        ++....++...|.++...++.++|+-.|+.|..+  
T Consensus       296 --~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--  363 (564)
T KOG1174|consen  296 --VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--  363 (564)
T ss_pred             --hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence              2223345566678888999999999999999998        7888999999999999999999999999999988  


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH-HHHH-HcCCHHHHHHHHHH
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG-VMYY-MLGNYSDSYDSFKN  583 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~  583 (727)
                             .|....+|..|..+|...|++.+|......++...+..       +.++..+| .+++ .-.--++|.+++++
T Consensus       364 -------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  364 -------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             -------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence                   45668899999999999999999999999999998876       45555564 3333 33345789999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      ++.+        .+.+..+-..+|.++...|.++.++.++++++..        .++.. .+..||.++...+.+.+|..
T Consensus       430 ~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~~-LH~~Lgd~~~A~Ne~Q~am~  492 (564)
T KOG1174|consen  430 SLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDVN-LHNHLGDIMRAQNEPQKAME  492 (564)
T ss_pred             hhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------ccccH-HHHHHHHHHHHhhhHHHHHH
Confidence            9886        3445677888999999999999999999999997        56544 78999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          664 ILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       664 ~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                      +|..|+.+        +|....++..|-.+-...
T Consensus       493 ~y~~ALr~--------dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  493 YYYKALRQ--------DPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHHhc--------CccchHHHHHHHHHHhcc
Confidence            99999987        788877777666554433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.77  E-value=1e-15  Score=155.40  Aligned_cols=369  Identities=16%  Similarity=0.068  Sum_probs=189.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (727)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (727)
                      ..+.-..|+.-+..+...+- ++-|+..|..|++.+.         ..-..|...+..--..|..+.-..+|++++...+
T Consensus       512 eed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp---------~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p  581 (913)
T KOG0495|consen  512 EEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFP---------CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP  581 (913)
T ss_pred             cchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            33344444444444444443 4444555555544431         1122233333333334444555555555544431


Q ss_pred             hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (727)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (727)
                           ..+.    .|+..+..+...|+...|...+.++++.        +|....+|+.--.+.+...+++.|..+|.++
T Consensus       582 -----kae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llaka  644 (913)
T KOG0495|consen  582 -----KAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKA  644 (913)
T ss_pred             -----cchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence                 1111    2444444445555555555555555544        3444444444444444455555555555554


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (727)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (727)
                      ....+..         .+|+.-+.+...+++.++|+.+++.+++.      .|.....|..+|+++..+++.+.|...|.
T Consensus       645 r~~sgTe---------Rv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~  709 (913)
T KOG0495|consen  645 RSISGTE---------RVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYL  709 (913)
T ss_pred             hccCCcc---------hhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4432211         23444444444555555555555554432      33444455555555555555555555555


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHH
Q 004848          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (727)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (727)
                      ..+..        .|.....|..|+.+-...|..-.|...++++.-.         .|.....|......-.+.|+.+.|
T Consensus       710 ~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~gn~~~a  772 (913)
T KOG0495|consen  710 QGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRAGNKEQA  772 (913)
T ss_pred             hcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHcCCHHHH
Confidence            54444        3444455555555555555555555555554333         222233444444444455555555


Q ss_pred             HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH
Q 004848          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (727)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  616 (727)
                      .....+|++-++.. |      ..|..-..+.-.-++-..++..       +++..     ....++..+|.+++...++
T Consensus       773 ~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DA-------Lkkce-----~dphVllaia~lfw~e~k~  833 (913)
T KOG0495|consen  773 ELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDA-------LKKCE-----HDPHVLLAIAKLFWSEKKI  833 (913)
T ss_pred             HHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHH-------HHhcc-----CCchhHHHHHHHHHHHHHH
Confidence            55555555544433 1      1111111111111111111111       11111     1235778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      ++|.+.|.+++++        +|+..++|..+-..+...|.-++-.+.|.++...
T Consensus       834 ~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  834 EKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             HHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            9999999999999        8999999999999999999999999999888753

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.77  E-value=1.3e-14  Score=148.06  Aligned_cols=419  Identities=14%  Similarity=0.120  Sum_probs=294.5

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (727)
                      -..++..+.-.+..++ |.+.+...+..++-+         |+....+...|..+..+|+-++|..+...++...     
T Consensus         7 E~~lF~~~lk~yE~kQ-YkkgLK~~~~iL~k~---------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-----   71 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQ-YKKGLKLIKQILKKF---------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-----   71 (700)
T ss_pred             HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhC---------CccchhHHhccchhhcccchHHHHHHHHHHhccC-----
Confidence            3467777888888887 888888877777632         5567778889999999999999999999999864     


Q ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (727)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (727)
                      ...    -.+|..+|.++....+|++|+++|+.|+.+        .+++..++..++.+..+.++++.....-.+.++..
T Consensus        72 ~~S----~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~  139 (700)
T KOG1156|consen   72 LKS----HVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR  139 (700)
T ss_pred             ccc----chhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            111    236999999999999999999999999999        78999999999999999999999999999999888


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       381 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      +...        ..|...+..+...|++..|....+.........  ........+......+....|.+++|++.+..-
T Consensus       140 ~~~r--------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  140 PSQR--------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             hhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence            7654        458999999999999999999888776544311  122334455566677888889988888776553


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH-
Q 004848          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-  537 (727)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-  537 (727)
                      -.-        --+........|.++..++++++|...|...+..         .|+....+..+-.++..-.+--+++ 
T Consensus       212 e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---------nPdn~~Yy~~l~~~lgk~~d~~~~lk  274 (700)
T KOG1156|consen  212 EKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---------NPDNLDYYEGLEKALGKIKDMLEALK  274 (700)
T ss_pred             hhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---------CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence            322        2333455667799999999999999999998887         3444444544444443222222233 


Q ss_pred             HHHHHHHHHHHhCCCC---------CccHHHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 004848          538 KLLQKALKIYNDAPGQ---------QSTVAGI----------------EAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-  591 (727)
Q Consensus       538 ~~~~~al~~~~~~~~~---------~~~~~~~----------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-  591 (727)
                      ..|...-+.++...-.         .......                ...+-.+|   .+..+. .++++.+..+... 
T Consensus       275 ~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L  350 (700)
T KOG1156|consen  275 ALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSL  350 (700)
T ss_pred             HHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhc
Confidence            3333322222211000         0000000                00111111   111111 2444444333322 


Q ss_pred             CC------------CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH
Q 004848          592 GE------------RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD  659 (727)
Q Consensus       592 ~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  659 (727)
                      .+            ..+....++++.++.-+...|+++.|..++..|+..        .|...+.|..-|+++...|+++
T Consensus       351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~  422 (700)
T KOG1156|consen  351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLD  422 (700)
T ss_pred             ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChH
Confidence            11            134556788889999999999999999999999998        8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          660 DAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       660 ~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                      +|..++..+.++.       .++ .-.--.-|.-..+..+.++|. +.+...-
T Consensus       423 eAa~~l~ea~elD-------~aD-R~INsKcAKYmLrAn~i~eA~-~~~skFT  466 (700)
T KOG1156|consen  423 EAAAWLDEAQELD-------TAD-RAINSKCAKYMLRANEIEEAE-EVLSKFT  466 (700)
T ss_pred             HHHHHHHHHHhcc-------chh-HHHHHHHHHHHHHccccHHHH-HHHHHhh
Confidence            9999999999862       222 222224577778888888888 6655443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.75  E-value=1.2e-17  Score=167.77  Aligned_cols=266  Identities=23%  Similarity=0.247  Sum_probs=113.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (727)
Q Consensus       396 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (727)
                      ..+|.++...|++++|++.+.+.+...    .++.....|..+|.+....++++.|+..|++++..        .+....
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~   79 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKI----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQ   79 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc--------cccccc
Confidence            356999999999999999996654321    13455577888999999999999999999999887        555667


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (727)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (727)
                      .+..++.+ ...+++++|+.+++++.+...          ....+..+..++...++++++...++++.....     ..
T Consensus        80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~----------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~  143 (280)
T PF13429_consen   80 DYERLIQL-LQDGDPEEALKLAEKAYERDG----------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----AP  143 (280)
T ss_dssp             -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred             cccccccc-ccccccccccccccccccccc----------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence            77778887 789999999999988876531          123455677788999999999999999774321     11


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      .....+..+|.++...|++++|+.+|++++...        +....+...++.++...|+++++.+.+......      
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------  209 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKA------  209 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------
Confidence            235678899999999999999999999999973        334567888999999999999988888887776      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                        .|.....+..+|.+|..+|++++|+.+|++++..        +|.++..+..+|.++...|+.++|. ..+++++..
T Consensus       210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~  277 (280)
T PF13429_consen  210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRL  277 (280)
T ss_dssp             ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred             --CcCHHHHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccc-ccccccccc
Confidence              2333346788999999999999999999999986        7888999999999999999999999 999888764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.74  E-value=1e-17  Score=168.20  Aligned_cols=266  Identities=20%  Similarity=0.161  Sum_probs=113.9

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004848          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (727)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (727)
                      .+|.+++..|++++|++.+.+.+....   ++.    ....|..+|.+....++++.|+..|++++..        ++..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~----~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~   77 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPD----DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc---ccc----ccccccccccccccccccccccccccccccc--------cccc
Confidence            569999999999999999977654320   112    2245888999999999999999999999987        4555


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (727)
                      ...+..++.+ ...+++++|+.++.++++..+..         ..+..+..++...++++++...+.++..    ....+
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~  143 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAP  143 (280)
T ss_dssp             --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred             cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCC
Confidence            6667777777 78999999999999887765322         2356677788999999999999988653    22234


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      .....+..+|.++...|++++|+.+|+++++.        .|....++..++.++...|+++++...+.........   
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---  212 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---  212 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---
Confidence            56778899999999999999999999999999        7888899999999999999999988888887777422   


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                            ....+..+|.++..+|++++|+.+|++++...+..       ..++..+|.++...|++++|..++.+++..+
T Consensus       213 ------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  213 ------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             ------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred             ------HHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence                  23357788999999999999999999999876655       4678899999999999999999999988754

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.74  E-value=3.6e-15  Score=158.27  Aligned_cols=442  Identities=15%  Similarity=0.084  Sum_probs=304.1

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (727)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (727)
                      ..+......+|..+.++-.+|..|....+ ...|..+|.+|.++-         +..+.+....+..|....+++.|...
T Consensus       479 ~ali~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  479 HALIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD---------ATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccccHHHHHHH
Confidence            34455566677777777777777766664 677777777776542         33355566677777777777777777


Q ss_pred             HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS  367 (727)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  367 (727)
                      .-.+-+...       .......|..+|..|...+++..|+..|+.++..        +|....+|..+|.+|...|++.
T Consensus       549 ~l~~~qka~-------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~  613 (1238)
T KOG1127|consen  549 CLRAAQKAP-------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYS  613 (1238)
T ss_pred             HHHHhhhch-------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCcee
Confidence            544443321       1223344677899999999999999999999998        8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHcC
Q 004848          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQDAEVASVDCSIGDTYLSLS  446 (727)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g  446 (727)
                      .|++.|.++..+.|...        ...+..+.+....|+|.+|+..+...+...... .-....+.++..++..+...|
T Consensus       614 ~AlKvF~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g  685 (1238)
T KOG1127|consen  614 HALKVFTKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG  685 (1238)
T ss_pred             hHHHhhhhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            99999999998887653        457788999999999999999998877544322 123456778888888888899


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----------------------CCh------HHHHHHH
Q 004848          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-----------------------GKL------RESKSYC  497 (727)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------------------g~~------~~A~~~~  497 (727)
                      -+.+|..+++++++.+.-............|..++....-.                       +..      --|.+++
T Consensus       686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~  765 (1238)
T KOG1127|consen  686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG  765 (1238)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence            99999999999988766543222122223333333322211                       110      0122222


Q ss_pred             HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 004848          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (727)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (727)
                      -..+.+.          .....|++||.-|+.        +.+...|+.++.+++++..+.       ...|+.||.+ .
T Consensus       766 ~~hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-s  827 (1238)
T KOG1127|consen  766 IAHLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-S  827 (1238)
T ss_pred             hHHHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-h
Confidence            2222221          114467788877766        234458999999999988766       3567777777 5


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (727)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (727)
                      ..|++.-|..+|-+++...        +.....|.++|.++.+..+++-|...|..+..+        +|.....|...+
T Consensus       828 g~gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~A  891 (1238)
T KOG1127|consen  828 GIGNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEA  891 (1238)
T ss_pred             ccchhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHH
Confidence            5578888888888776642        234567777888888888888888777777776        676666666666


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHH-----------------------------------------HHhcCCCChhHHHHHH
Q 004848          650 GTYDAIGRLDDAIEILEFVVGIR-----------------------------------------EEKLGTANPDVDDEKR  688 (727)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------~~~~g~~~p~~~~~~~  688 (727)
                      .+....|+.-++...+...-++.                                         -..+=..+|+...++.
T Consensus       892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~  971 (1238)
T KOG1127|consen  892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA  971 (1238)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence            66666666555555554411110                                         0111135888899999


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          689 RLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..|.++..++.+++|. +...+++.+-..
T Consensus       972 ~~gstlEhL~ey~~a~-ela~RliglLe~  999 (1238)
T KOG1127|consen  972 ANGSTLEHLEEYRAAL-ELATRLIGLLEL  999 (1238)
T ss_pred             HHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            9999999999999999 888887766443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.73  E-value=1.4e-14  Score=137.37  Aligned_cols=346  Identities=15%  Similarity=0.152  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (727)
                      +......|..++...+ +++|+..+.+.+......      ......+-.+..+...+|.|++++.+---.+.....   
T Consensus         6 ~k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~---   75 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE---   75 (518)
T ss_pred             hHHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH---
Confidence            3456677888899887 999999999988776443      334556777788899999999988877666655422   


Q ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (727)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (727)
                      .++......++.+++..+...-++.+++.+-...+.+-    +... ..-......++.++...+.|+++++.|+.|+++
T Consensus        76 ~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~  151 (518)
T KOG1941|consen   76 LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY  151 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            33444567789999999999999999988877776651    1111 123356677899999999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAY  455 (727)
Q Consensus       380 ~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (727)
                      ...+.++  .....++..||.++....|+++|+-+..+|..+....+..    .....+++.++..+..+|+.-.|.+++
T Consensus       152 A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C  229 (518)
T KOG1941|consen  152 AHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC  229 (518)
T ss_pred             hhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            9888765  3335678899999999999999999999999888776632    234567889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHH
Q 004848          456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ  535 (727)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  535 (727)
                      +++.++.-..+  +.+..+..+..+|.+|...|+.+.|..-|+.|+.......   +......++...|.++....-..+
T Consensus       230 ~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g---drmgqv~al~g~Akc~~~~r~~~k  304 (518)
T KOG1941|consen  230 EEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG---DRMGQVEALDGAAKCLETLRLQNK  304 (518)
T ss_pred             HHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999988776  5788899999999999999999999999999999877642   233445667777777766554444


Q ss_pred             -----HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          536 -----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       536 -----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                           |++.-.+++++.... |....+..+...++.+|..+|.-++-...+.++-+..
T Consensus       305 ~~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  305 ICNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             ccccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence                 999999999998877 7777777889999999999998888777777766543

>PRK12370 invasion protein regulator; Provisional

Probab=99.73  E-value=3.2e-15  Score=164.05  Aligned_cols=254  Identities=13%  Similarity=0.020  Sum_probs=203.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (727)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (727)
                      +++++|+.+|++++.      .+|..+.++..+|.+|...         +++++|+..+++++++        +|....+
T Consensus       275 ~~~~~A~~~~~~Al~------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a  340 (553)
T PRK12370        275 YSLQQALKLLTQCVN------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA  340 (553)
T ss_pred             HHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence            457899999999975      4667778888888887643         3489999999999998        7889999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCcc
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (727)
                      +..+|.++...|++++|+..|++++++         .|....+++.+|.++...|++++|+.++++++++.+...     
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----  406 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----  406 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence            999999999999999999999999999         445567899999999999999999999999999976542     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                        ..+..++.+++..|++++|+..+++++...       ++.....+..+|.++...|++++|+..+.+....       
T Consensus       407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-------  470 (553)
T PRK12370        407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-------  470 (553)
T ss_pred             --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence              233445666778999999999999987641       1223567888999999999999999999887665       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (727)
                       .|....+...++..|...|+  +|...+++.++.....  +.+      ...+..+|.-.|+.+.+. .. +++.+.+.
T Consensus       471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~  537 (553)
T PRK12370        471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEK-MW-NKFKNEDN  537 (553)
T ss_pred             -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHH-HH-HHhhccch
Confidence             67777788899999998884  8888888877654321  111      223788888899988887 54 76665544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.73  E-value=1.4e-14  Score=137.24  Aligned_cols=345  Identities=16%  Similarity=0.116  Sum_probs=277.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (727)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (727)
                      ...-|.-++...++++|+..+.+.+...      ++....+.++-.+..+...+|.|++++.+--..+..+...  ++..
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~   80 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKL------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSD   80 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            3445677788889999999998888763      2334466778888899999999999988877766665543  1224


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (727)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (727)
                      ...+++.+++..+....+|.+++.+....+.+-...... ..  ......++..+..++.|++++++|+.|+.+....++
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~-~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D  157 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ-LG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD  157 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc-cc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence            566889999999999999999999988877654332211 11  245677999999999999999999999999999988


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      ......++..+|.+|....|+++|+.+..+|.++.+...-.+  ......+++.++..+..+|+.-.|.++++++.++.-
T Consensus       158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999987765332  233566788999999999999999999999999977


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHH-----HHHH
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-----SYDS  580 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~  580 (727)
                      ..   .+.+..+..+..+|.+|...|+.+.|..-|+.|....... |+.-....++...+.++....-..+     |+++
T Consensus       238 ~~---Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~  313 (518)
T KOG1941|consen  238 QH---GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF  313 (518)
T ss_pred             Hh---CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence            64   3466778889999999999999999999999999988766 6655555667777777766555555     9999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      -.+++++...++.+.  ....+...++.+|..+|.-++-...+..+-+.
T Consensus       314 n~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  314 NTRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            999999999888764  34578888999999999888877777776554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=7.8e-16  Score=137.84  Aligned_cols=208  Identities=17%  Similarity=0.134  Sum_probs=183.8

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      .....+...||.-|...|++..|...+++|+++         +|....++..+|.+|...|+.+.|.+.|++|+.+.++.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~  102 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN  102 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence            445678899999999999999999999999999         66678899999999999999999999999999998877


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                             ..++++.|..++.+|++++|...|++|+..      +.-.....++.++|.|.++.|+++.|.++|++++++ 
T Consensus       103 -------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-  168 (250)
T COG3063         103 -------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-  168 (250)
T ss_pred             -------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence                   478999999999999999999999999873      222335679999999999999999999999999999 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                             +|........++..+...|++..|..++++....        -+..++.+....++-...|+.+.+. .+=.+
T Consensus       169 -------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~-~Y~~q  232 (250)
T COG3063         169 -------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQ  232 (250)
T ss_pred             -------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHH-HHHHH
Confidence                   8888889999999999999999999999988754        2355777777788889999999988 77777


Q ss_pred             HHHHhhh
Q 004848          711 LLDANSR  717 (727)
Q Consensus       711 al~~~p~  717 (727)
                      +-.+.|.
T Consensus       233 L~r~fP~  239 (250)
T COG3063         233 LQRLFPY  239 (250)
T ss_pred             HHHhCCC
Confidence            7777776

>TIGR00540 hemY_coli hemY protein

Probab=99.73  E-value=3.2e-14  Score=150.39  Aligned_cols=315  Identities=14%  Similarity=0.081  Sum_probs=229.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (727)
                      +......|.+....|+++.|.+.+.++.+..+..        ...+...|.++...|+++.|..++.++.+..   ++..
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~--------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~  152 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP--------VLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDN  152 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCc
Confidence            3445667888889999999999998887765332        2446778999999999999999999886421   1111


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                        ..+....+.++...|++++|...+++.++.        .|....++..++.++...|++++|...+.+.++...    
T Consensus       153 --l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~----  218 (409)
T TIGR00540       153 --ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL----  218 (409)
T ss_pred             --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----
Confidence              123444589999999999999999999987        788889999999999999999999999998887621    


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (727)
                       .+.............-+...+..+++...+..+....+..   ......++..++..+...|++++|...++++++...
T Consensus       219 -~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p  294 (409)
T TIGR00540       219 -FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG  294 (409)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence             1122222222222222234455555556666666554421   111246778899999999999999999999998632


Q ss_pred             HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNLAGTYDAIGRLDDAIEILEF  667 (727)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~  667 (727)
                      .     +.... ............++...+++.++++++.        +|+..  ..+..+|+++...|++++|.++|++
T Consensus       295 d-----~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~  360 (409)
T TIGR00540       295 D-----DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKN  360 (409)
T ss_pred             C-----cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            2     11000 0122233334468889999999999988        78877  7889999999999999999999995


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       668 al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      +..+      ..+|+... +..||.++.+.|+.++|. +++++++..-
T Consensus       361 a~a~------~~~p~~~~-~~~La~ll~~~g~~~~A~-~~~~~~l~~~  400 (409)
T TIGR00540       361 VAAC------KEQLDAND-LAMAADAFDQAGDKAEAA-AMRQDSLGLM  400 (409)
T ss_pred             hHHh------hcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHHHH
Confidence            3332      12566555 559999999999999999 9999987653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.72  E-value=1.7e-15  Score=166.23  Aligned_cols=263  Identities=11%  Similarity=-0.030  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---------CChhHHHHHHHHhc
Q 004848          224 LLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQSI  292 (727)
Q Consensus       224 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al  292 (727)
                      ++..|...+...  +++++|+.+|++|+++.         |..+.++..+|.+|...         +++++|+..+++++
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            445555444332  23678888888888752         45577788888887644         34899999999999


Q ss_pred             ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004848          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF  372 (727)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  372 (727)
                      ++.     ++++.    ++..+|.++...|++++|+.+|++++++        +|..+.+++.+|.++...|++++|+.+
T Consensus       332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            986     55543    4888999999999999999999999999        799999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004848          373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (727)
Q Consensus       373 ~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (727)
                      +++++++.|...        ..+..++.+++..|++++|+..+++++..     ..+.....+..+|.++..+|++++|.
T Consensus       395 ~~~Al~l~P~~~--------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~  461 (553)
T PRK12370        395 INECLKLDPTRA--------AAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELAR  461 (553)
T ss_pred             HHHHHhcCCCCh--------hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence            999999987643        22445566677789999999999887642     23445567888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc
Q 004848          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (727)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (727)
                      ..+.++...        .|....++..++..|...|  ++|...+++.++.....         ..-...++.+|.-.|+
T Consensus       462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~  522 (553)
T PRK12370        462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE  522 (553)
T ss_pred             HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence            999887655        6777788888899998888  48888888877664431         1112237778888888


Q ss_pred             HHHHHHHHHHHHH
Q 004848          533 LEQAIKLLQKALK  545 (727)
Q Consensus       533 ~~~A~~~~~~al~  545 (727)
                      -+.+..+ +++.+
T Consensus       523 ~~~~~~~-~~~~~  534 (553)
T PRK12370        523 AIAEKMW-NKFKN  534 (553)
T ss_pred             hHHHHHH-HHhhc
Confidence            8877766 55543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.72  E-value=2.3e-13  Score=139.09  Aligned_cols=443  Identities=16%  Similarity=0.157  Sum_probs=309.2

Q ss_pred             ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004848          212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS  291 (727)
Q Consensus       212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  291 (727)
                      .....+|+.++.+-..|..+...|+ -++|.++...++..         ++....||+.+|.++....+|++|+.+|+.|
T Consensus        32 ~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~---------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA  101 (700)
T KOG1156|consen   32 QILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRN---------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA  101 (700)
T ss_pred             HHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhcc---------CcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3444788888999999999999998 89999999988863         2445779999999999999999999999999


Q ss_pred             cccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004848          292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (727)
Q Consensus       292 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (727)
                      +.+.     +++    ...|..++..-.++++++-....-.+.+++        .|.....|..+|..+...|++..|..
T Consensus       102 l~~~-----~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen  102 LKIE-----KDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             HhcC-----CCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9985     333    345899999999999999999998888888        57888899999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 004848          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (727)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (727)
                      ..+...................+......+....|.+++|++.+..-..      ...+........|.++..++++++|
T Consensus       165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~e~ka~l~~kl~~lEeA  238 (700)
T KOG1156|consen  165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFEETKADLLMKLGQLEEA  238 (700)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHhhhHHHHHHHHhhHHhH
Confidence            9988877765444444555566777778888999999999988764421      1223334456678999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHhcCC----------CCCChHhHHHH-
Q 004848          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPV----------PGVPPEEIASG-  519 (727)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~----------~~~~~~~~~~~-  519 (727)
                      ...|...+..        .|+....+..+-.++..-.+.-+++ ..|...-+.+....          .+..-+....- 
T Consensus       239 ~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky  310 (700)
T KOG1156|consen  239 VKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY  310 (700)
T ss_pred             HHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence            9999999987        7888888777777775222233333 33333322221110          00011111000 


Q ss_pred             ------------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC--------------CCCccHHHHHHHHHHHHHHcCC
Q 004848          520 ------------LTDVSSIYESMNELEQAIKLLQKALKIYNDAP--------------GQQSTVAGIEAQMGVMYYMLGN  573 (727)
Q Consensus       520 ------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~la~~~~~~g~  573 (727)
                                  ...+-.+|   .+..+. ..+++.+..+....              ..+..+.+.++.++..+...|+
T Consensus       311 L~~~l~Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~  386 (700)
T KOG1156|consen  311 LRPLLSKGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD  386 (700)
T ss_pred             HHHHhhcCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence                        00111111   111111 13333333222111              1233567778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004848          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (727)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (727)
                      ++.|..+++.|+.-        .+.....|...|+++...|++++|..++.++.++        +....-+-..-|.-..
T Consensus       387 ~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D~aDR~INsKcAKYmL  450 (700)
T KOG1156|consen  387 YEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------DTADRAINSKCAKYML  450 (700)
T ss_pred             HHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cchhHHHHHHHHHHHH
Confidence            99999999999873        5667788999999999999999999999999887        2222223335777788


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHH--HHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR--RLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~--~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +..+.++|.+...+.-.-.....+ +-.+..-.|+  .-|..|.++|++-.|+ +-+..+-....+
T Consensus       451 rAn~i~eA~~~~skFTr~~~~~~~-~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~k~~~~  514 (700)
T KOG1156|consen  451 RANEIEEAEEVLSKFTREGFGAVN-NLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIEKHYKT  514 (700)
T ss_pred             HccccHHHHHHHHHhhhcccchhh-hHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHHHHHHH
Confidence            899999998877665432111110 1112222333  3478899999998888 666655544433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.72  E-value=2.2e-15  Score=147.48  Aligned_cols=208  Identities=20%  Similarity=0.223  Sum_probs=177.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .......+..+|.++...|++++|+..+++++..         .|....++..+|.++...|++++|+.++++++...+.
T Consensus        27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~   97 (234)
T TIGR02521        27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH---------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN   97 (234)
T ss_pred             CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4456788999999999999999999999999887         2344678889999999999999999999999987554


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      .       ..++..+|.++...|++++|+.+|++++....      .......+..+|.++...|++++|..+|.+++..
T Consensus        98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3       35788899999999999999999999987411      1223457888999999999999999999999998


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE  709 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  709 (727)
                              .|....++..+|.++...|++++|..++++++.+        .|.....+..++.++...|+.++|. .+.+
T Consensus       165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~  227 (234)
T TIGR02521       165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQ-RYGA  227 (234)
T ss_pred             --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence                    6777778999999999999999999999999976        2445666778899999999999999 8888


Q ss_pred             HHHHHhh
Q 004848          710 TLLDANS  716 (727)
Q Consensus       710 ~al~~~p  716 (727)
                      .+....|
T Consensus       228 ~~~~~~~  234 (234)
T TIGR02521       228 QLQKLFP  234 (234)
T ss_pred             HHHhhCc
Confidence            7776544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.72  E-value=1.9e-15  Score=151.86  Aligned_cols=247  Identities=16%  Similarity=0.122  Sum_probs=180.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (727)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (727)
                      +..+.++..+.+++...  .-.+...+..++.+|.+|...|++++|+..|++++++        .|....++..+|.++.
T Consensus        40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~  109 (296)
T PRK11189         40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLT  109 (296)
T ss_pred             hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence            45677777777765321  1234556788999999999999999999999999998        7888999999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004848          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (727)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (727)
                      ..|++++|+..|++++++         .|....++.++|.++...|++++|+..|++++++.+..+     ....+   .
T Consensus       110 ~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~---~  172 (296)
T PRK11189        110 QAGNFDAAYEAFDSVLEL---------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRALW---L  172 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH---H
Confidence            999999999999999998         444567899999999999999999999999999866541     11122   2


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004848          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (727)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (727)
                      .++...+++++|+..|.+++...    +  +.    .+. .+.++...|++.++ ..++.+.+.+..... -.|....+|
T Consensus       173 ~l~~~~~~~~~A~~~l~~~~~~~----~--~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~-l~~~~~ea~  239 (296)
T PRK11189        173 YLAESKLDPKQAKENLKQRYEKL----D--KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTE-LAERLCETY  239 (296)
T ss_pred             HHHHccCCHHHHHHHHHHHHhhC----C--cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHH-HHHHHHHHH
Confidence            23455788999999998766431    1  11    111 34455556665443 233333321110000 045667899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (727)
                      ++||.++...|++++|+.+|++++.+.       .++..+..+.+.++....++
T Consensus       240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~-------~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        240 FYLAKYYLSLGDLDEAAALFKLALANN-------VYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999862       24777777666666555444

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=1.1e-14  Score=153.98  Aligned_cols=318  Identities=13%  Similarity=0.041  Sum_probs=226.6

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (727)
                      +...+..|...+..|+ ++.|.+.+.++.+..       +.  ....+...|.++..+|+++.|..+|.++.+..     
T Consensus        84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~-------~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----  148 (409)
T TIGR00540        84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHA-------AE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----  148 (409)
T ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcC-------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            3455778888899997 999999988876642       22  24456677999999999999999999997653     


Q ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (727)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (727)
                      ++..   ..+....+.++...|+++.|...+++.++.        .|....++..++.++...|++++|.+.+.+.++..
T Consensus       149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            2221   112445699999999999999999999988        68888999999999999999999999999888763


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (727)
Q Consensus       381 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (727)
                      ....    ............-....+..+++...+..+....  ....+.....+..++..+...|++++|+..++++++
T Consensus       218 ~~~~----~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       218 LFDD----EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             CCCH----HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence            1110    1011111111222233344444444555444321  111123567888899999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848          461 AFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (727)
Q Consensus       461 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (727)
                      .        .|+....  ...........++.+.++..++++++..      .+++. +..+..+|.++...|++++|.+
T Consensus       292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~------p~~~~-~~ll~sLg~l~~~~~~~~~A~~  356 (409)
T TIGR00540       292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV------DDKPK-CCINRALGQLLMKHGEFIEAAD  356 (409)
T ss_pred             h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC------CCChh-HHHHHHHHHHHHHcccHHHHHH
Confidence            7        4444321  1222333344578889999999988872      22322 3678899999999999999999


Q ss_pred             HHHH--HHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          539 LLQK--ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       539 ~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      +|++  +++..++.        ..+..+|.++...|+.++|..+|++++...-..++
T Consensus       357 ~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~  405 (409)
T TIGR00540       357 AFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD  405 (409)
T ss_pred             HHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence            9995  54443322        34568999999999999999999999887655443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=5.9e-13  Score=130.76  Aligned_cols=432  Identities=15%  Similarity=0.097  Sum_probs=302.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      -....|...|..-...++ +..|...|++||..       +  ......+...+.+-++......|..++++|+.+.+. 
T Consensus        71 ~~~~~WikYaqwEesq~e-~~RARSv~ERALdv-------d--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-  139 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKE-IQRARSVFERALDV-------D--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-  139 (677)
T ss_pred             HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhc-------c--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-
Confidence            344555666655555554 66666666666653       1  223455777788888888889999999998887521 


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                          .    -..|+....+-..+|+..-|.+.|++-+..        .|+. .+|......-.+....+.|...|++.+-
T Consensus       140 ----V----dqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~  202 (677)
T KOG1915|consen  140 ----V----DQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVL  202 (677)
T ss_pred             ----H----HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence                1    123666667777888888888888888877        3443 5666666666677778888888888776


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      .+|+.         ..|...+..-...|+..-|...|.+|+..+.   ++......+...|..-..+..++.|...|+-|
T Consensus       203 ~HP~v---------~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA  270 (677)
T KOG1915|consen  203 VHPKV---------SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYA  270 (677)
T ss_pred             ecccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66543         4577777777788888888888888775543   23334444555555555666666666666655


Q ss_pred             HHHH---------------HHhcCC---------------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          459 LTAF---------------KTNKGE---------------------NHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (727)
Q Consensus       459 l~~~---------------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (727)
                      ++..               ++.+|+                     .+|.+-.+|+..-.+-...|+.+.-.+.|++|+.
T Consensus       271 ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa  350 (677)
T KOG1915|consen  271 LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA  350 (677)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence            5431               111111                     3566677888888888888999999999999987


Q ss_pred             HHhcCCCCCChHhHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          503 IYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (727)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (727)
                      -..-......-......|.+.+.. -....+.+.+.+.|+.++++.|.   .....+.+|...|.....+.+...|.+.+
T Consensus       351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH---kkFtFaKiWlmyA~feIRq~~l~~ARkiL  427 (677)
T KOG1915|consen  351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH---KKFTFAKIWLMYAQFEIRQLNLTGARKIL  427 (677)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc---ccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            632210000001122223333221 23567899999999999998753   34577888999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHH
Q 004848          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA  661 (727)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  661 (727)
                      -.|+..+++         ..++.....+-.++++++....+|++-++.        .|....+|...|.+-..+|+.+.|
T Consensus       428 G~AIG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRa  490 (677)
T KOG1915|consen  428 GNAIGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRA  490 (677)
T ss_pred             HHHhccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHH
Confidence            999876543         244555566777889999999999999998        899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          662 IEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       662 ~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ...|+-|+.--.    -+-|.  ..+......-...|.++.|. ..|+++|+..+.
T Consensus       491 RaifelAi~qp~----ldmpe--llwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h  539 (677)
T KOG1915|consen  491 RAIFELAISQPA----LDMPE--LLWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH  539 (677)
T ss_pred             HHHHHHHhcCcc----cccHH--HHHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence            999999886310    11122  23444556667889999999 999999998775

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=3.5e-13  Score=136.28  Aligned_cols=431  Identities=13%  Similarity=0.104  Sum_probs=271.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCc
Q 004848          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (727)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (727)
                      ..++.--..+...|+ |++|+....+.+...         |+...+++.--.++.+.++|++|+.+.+.-....     .
T Consensus        13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~   77 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGE-YEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V   77 (652)
T ss_pred             HHHHHHHHHhccchH-HHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence            566666777888887 888888888877653         3345567778888999999999996666543321     0


Q ss_pred             cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (727)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (727)
                           .....+..+.|.++++..++|+..++-+           ++....++...|.+++++|+|++|...|+..++-..
T Consensus        78 -----~~~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   78 -----INSFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             -----cchhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence                 1111367899999999999999998821           233445677789999999999999999998876543


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD-AEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (727)
Q Consensus       382 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (727)
                      ...+.     -.-.+.++..-...++             ........ ......+++.|.++...|+|.+|++.+++++.
T Consensus       142 dd~d~-----~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  142 DDQDE-----ERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             chHHH-----HHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            32211     1111222221111111             11112222 33567889999999999999999999999999


Q ss_pred             HHHHhcCCCC-------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccH
Q 004848          461 AFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (727)
Q Consensus       461 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (727)
                      ++++.+..++       .....+...|+.++..+|+-.+|...|...+.....     +.+..+.+-++|-.+-....-+
T Consensus       204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~  278 (652)
T KOG2376|consen  204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF  278 (652)
T ss_pred             HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence            9887664332       234567889999999999999999999988876321     2333333333332221111101


Q ss_pred             H---------------------------HHHH-----------HHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCH
Q 004848          534 E---------------------------QAIK-----------LLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNY  574 (727)
Q Consensus       534 ~---------------------------~A~~-----------~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~  574 (727)
                      +                           +++.           --.++.++....++..+ ....++..-+...... .+
T Consensus       279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~-~~  357 (652)
T KOG2376|consen  279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREK-KH  357 (652)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHH-HH
Confidence            1                           0000           00111112222222221 1111211111111111 33


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (727)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (727)
                      .+|..++       ....+.++.....+...++.+...+|+++.|++.+...+......... --....+-..+-..|..
T Consensus       358 ~ka~e~L-------~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~V~aiv~l~~~  429 (652)
T KOG2376|consen  358 KKAIELL-------LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPGTVGAIVALYYK  429 (652)
T ss_pred             hhhHHHH-------HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhHHHHHHHHHHh
Confidence            3343333       333334444446678888999999999999999999655332222211 11222233455667888


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          655 IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       655 ~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++.+-|...+..|+..+...... .+.....+..++.+-.+.|+.++|. ..|+++++.+|.
T Consensus       430 ~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~  490 (652)
T KOG2376|consen  430 IKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPN  490 (652)
T ss_pred             ccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCc
Confidence            888888999999999887765543 3566667778888888999999999 999999998876

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.71  E-value=1.5e-14  Score=153.73  Aligned_cols=374  Identities=14%  Similarity=0.105  Sum_probs=278.4

Q ss_pred             cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (727)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (727)
                      ..+...|...|-+++++.     +.    ...++..||.+|....+...|..+|++|.++        ++..+.+....+
T Consensus       471 rK~~~~al~ali~alrld-----~~----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a  533 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLD-----VS----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA  533 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcc-----cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence            445788999999999885     22    3345888999999999999999999999999        889999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (727)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (727)
                      ..|....+++.|...+..+-+..+...      ....|..+|..|...+++..|+..|+.+++      .+|....+|..
T Consensus       534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR------~dPkD~n~W~g  601 (1238)
T KOG1127|consen  534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALR------TDPKDYNLWLG  601 (1238)
T ss_pred             HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhc------CCchhHHHHHH
Confidence            999999999999988655544443322      123466699999999999999999999975      47888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004848          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (727)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (727)
                      +|.+|...|+|..|++.|.++..+        .|......+..+.+....|+|.+|+..+...+..+..-.+  .....+
T Consensus       602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLa  671 (1238)
T KOG1127|consen  602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLA  671 (1238)
T ss_pred             HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHH
Confidence            999999999999999999999998        8999999999999999999999999999988877544321  123457


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHH-----------------------cCC
Q 004848          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM-----------------------LGN  573 (727)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~-----------------------~g~  573 (727)
                      .++..++..+...|-+.+|..+++++++.+.-..... ......|..+|..+.-                       ++.
T Consensus       672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~  751 (1238)
T KOG1127|consen  672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA  751 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence            7788888888888888889999988887665332111 1111122222222111                       111


Q ss_pred             H------HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004848          574 Y------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--------RYSINEAVELFEEARSILEQECGPYHP  639 (727)
Q Consensus       574 ~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (727)
                      .      --|.+++-..+.+..         ....|+++|.-|+.        +.+-..|+.++.+++++        ..
T Consensus       752 l~~~d~l~Lg~~c~~~hlsl~~---------~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--------~a  814 (1238)
T KOG1127|consen  752 LKKNDLLFLGYECGIAHLSLAI---------HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--------CA  814 (1238)
T ss_pred             CcchhHHHHHHHHhhHHHHHhh---------ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--------hh
Confidence            0      112333333333211         13567888877765        22345899999999998        45


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .....|..||.+ ...|++.-|..+|-+.+..        .|.....|.++|.++....+++-|. ..|.++..++|.
T Consensus       815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~-~af~~~qSLdP~  882 (1238)
T KOG1127|consen  815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAE-PAFSSVQSLDPL  882 (1238)
T ss_pred             ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhh-HHHHhhhhcCch
Confidence            555577777776 5557888888888887755        5777778888888888888888888 888888888886

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.70  E-value=6.8e-15  Score=144.01  Aligned_cols=207  Identities=15%  Similarity=0.124  Sum_probs=173.2

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      +....+..+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++...  
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--   95 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--   95 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence            34456778899999999999999999999999887        67778899999999999999999999999999883  


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                             +.....+..+|.++...|++++|+.++++++....     .......+..+|.++...|++++|..++.+++.
T Consensus        96 -------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        96 -------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             -------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                   22345788899999999999999999999987421     122245677899999999999999999999988


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                      ...        ....++..+|.++...|++++|..++++++..        .|.....+..++.++...|+.++|..+.+
T Consensus       164 ~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       164 IDP--------QRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             hCc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            621        12457888999999999999999999999987        45556677788999999999999999887


Q ss_pred             HHHHH
Q 004848          667 FVVGI  671 (727)
Q Consensus       667 ~al~~  671 (727)
                      .+...
T Consensus       228 ~~~~~  232 (234)
T TIGR02521       228 QLQKL  232 (234)
T ss_pred             HHHhh
Confidence            76543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.70  E-value=4.5e-15  Score=133.01  Aligned_cols=208  Identities=17%  Similarity=0.156  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                      ....+...||.-|+..|++..|...+++||+.        +|....+|..+|.+|...|+.+.|.+.|++|+.+.|+.++
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd  104 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD  104 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence            34567889999999999999999999999999        8999999999999999999999999999999999998874


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (727)
Q Consensus       386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (727)
                              ++++.|..++.+|++++|..+|++|+.    .+.-+....++.++|.|..+.|+++.|..+|++++++    
T Consensus       105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~----  168 (250)
T COG3063         105 --------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL----  168 (250)
T ss_pred             --------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----
Confidence                    599999999999999999999999975    3455677889999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                          +|........++..++..|+|..|..++++......         ..+..+.....+-...|+-+.|-.+-.+...
T Consensus       169 ----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         169 ----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             ----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                888899999999999999999999999988766521         2355666667777888999888887777666


Q ss_pred             HHHhC
Q 004848          546 IYNDA  550 (727)
Q Consensus       546 ~~~~~  550 (727)
                      .+|..
T Consensus       236 ~fP~s  240 (250)
T COG3063         236 LFPYS  240 (250)
T ss_pred             hCCCc
Confidence            66544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.70  E-value=6.1e-14  Score=146.84  Aligned_cols=333  Identities=13%  Similarity=0.020  Sum_probs=236.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004848          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (727)
Q Consensus       309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (727)
                      ..+..+|.++...|+.+.+...+.++......     +..........+.++...|++++|...+++++...|...    
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----   77 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL----   77 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence            35888999999999999998888888877533     344556677889999999999999999999998876542    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (727)
Q Consensus       389 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (727)
                          .++.. +..+...|++..+.....+++..  ..+..+.....+..+|.++...|++++|+..+++++++       
T Consensus        78 ----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-------  143 (355)
T cd05804          78 ----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-------  143 (355)
T ss_pred             ----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Confidence                22333 55566666555555555544433  34567777788889999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                       .|....++..+|.++...|++++|+.++++++.....     ........+..++.++...|++++|+..|++++...+
T Consensus       144 -~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         144 -NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence             6777889999999999999999999999999987432     1223345677899999999999999999999864422


Q ss_pred             hCCCCCccHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          549 DAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       549 ~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                      .    .......+.  .+...+...|....+..+ +.+..........  ..........+.++...|+.++|...++..
T Consensus       218 ~----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l  290 (355)
T cd05804         218 E----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAAL  290 (355)
T ss_pred             C----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            1    111111111  223333444543333222 2222222221111  112223345788889999999999999998


Q ss_pred             HHHHHHhc-CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848          627 RSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (727)
Q Consensus       627 l~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (727)
                      ........ .........+....|.++...|++++|+..+..++.+...+.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg  342 (355)
T cd05804         291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG  342 (355)
T ss_pred             HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            77655410 0012334557788899999999999999999999998865554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.69  E-value=2e-14  Score=150.52  Aligned_cols=339  Identities=16%  Similarity=0.104  Sum_probs=239.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (727)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (727)
                      +|+.+..+..+|..+...|+ ++.|...+.++.......      ..........+.++...|++++|...+++++... 
T Consensus         2 dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-   73 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAAR------ATERERAHVEALSAWIAGDLPKALALLEQLLDDY-   73 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence            78999999999999999986 899988888887765322      2334556678999999999999999999999875 


Q ss_pred             hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (727)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (727)
                          +.+..    ++.. +..+...|.+..+.....+++..    ....+|....++..+|.++...|++++|+..++++
T Consensus        74 ----P~~~~----a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  140 (355)
T cd05804          74 ----PRDLL----ALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA  140 (355)
T ss_pred             ----CCcHH----HHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                33332    2333 55666666666555555555543    23446888888899999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (727)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (727)
                      +.+.|...        .++..+|.++...|++++|+.++.+++.....  ........+..+|.++...|++++|+..|+
T Consensus       141 l~~~p~~~--------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         141 LELNPDDA--------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             HhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99887653        56889999999999999999999998764322  122334567789999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHH
Q 004848          457 KALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (727)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (727)
                      +++...     +..+.....  ...+...+...|....+... +.+........+.   +.........+.++...|+.+
T Consensus       211 ~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         211 THIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCHH
Confidence            986431     001111111  11223334444543333332 2222221111111   112222246888889999999


Q ss_pred             HHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848          535 QAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (727)
Q Consensus       535 ~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (727)
                      +|...+..........  .+.......+....+.++...|++++|...+..++.+...+|+.+
T Consensus       282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~  344 (355)
T cd05804         282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH  344 (355)
T ss_pred             HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            9999999888776551  022223345667789999999999999999999999998888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.69  E-value=1.1e-13  Score=145.56  Aligned_cols=303  Identities=13%  Similarity=0.072  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (727)
                      +...+.-|......|+|++|.+.+.++-+.    .+.  +  ...+...+.+....|+++.|..+|.++...      .+
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~--p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~  149 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ--P--VVNYLLAAEAAQQRGDEARANQHLERAAEL------AD  149 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc--h--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence            344566677777889999999776654332    111  1  223445566779999999999999998642      22


Q ss_pred             hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          430 EV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       430 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      .. .......+.++...|++++|+..+++..+.        .|....++..++.+|...|++++|+..+.+..+....  
T Consensus       150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~--  219 (398)
T PRK10747        150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG--  219 (398)
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--
Confidence            22 223334589999999999999999999887        7888899999999999999999999999988776211  


Q ss_pred             CCCChHhHH----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          509 PGVPPEEIA----SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (727)
Q Consensus       509 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (727)
                         +.....    .++..+........+    ...+.+..+..+..   .+....+...++..+...|+.++|...++++
T Consensus       220 ---~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~  289 (398)
T PRK10747        220 ---DEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDG  289 (398)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               122222    122222222222222    22333333322221   1122467788999999999999999999998


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHH
Q 004848          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI  664 (727)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  664 (727)
                      ++.     .. ++   ......+.  ...++++++++.+++.++.        +|+....+..+|.++...|++++|..+
T Consensus       290 l~~-----~~-~~---~l~~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~  350 (398)
T PRK10747        290 LKR-----QY-DE---RLVLLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLA  350 (398)
T ss_pred             Hhc-----CC-CH---HHHHHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            873     11 11   11122222  3458999999999999988        899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          665 LEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       665 ~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      |+++++.        +|+.. .+..|+.++.+.|+.++|. ++|++++.+.
T Consensus       351 le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~-~~~~~~l~~~  391 (398)
T PRK10747        351 FRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAA-AMRRDGLMLT  391 (398)
T ss_pred             HHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHH-HHHHHHHhhh
Confidence            9999986        56654 4568999999999999999 9999998865

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.69  E-value=1.1e-13  Score=129.88  Aligned_cols=305  Identities=13%  Similarity=0.115  Sum_probs=238.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004848          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (727)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (727)
                      +..|.-+.-..+.++|+..|...++.        +|...++...||.+|...|..+.|+.+-+..+.. |+.   .....
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdl---T~~qr  106 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDL---TFEQR  106 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCC---chHHH
Confidence            34566677788999999999999987        7999999999999999999999999987765543 222   23345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      ..++..||.-|...|-++.|...|.....      .......++..|..+|....+|++|++..++...+-.+.   ...
T Consensus       107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~d------e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~  177 (389)
T COG2956         107 LLALQQLGRDYMAAGLLDRAEDIFNQLVD------EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRV  177 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhc------chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chh
Confidence            67899999999999999999999987642      244455678889999999999999999988777763322   256


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      ..+..|..||..+....+++.|+..+.+|++.         ++..+.+-..+|.++...|+|+.|++.++.+++..+.. 
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-  247 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQA---------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-  247 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-
Confidence            78889999999999999999999999999998         44556778889999999999999999999998865544 


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (727)
                           +..+...|..+|..+|+.++.+..+.++.+....         ..+...++.+-....-.+.|..++.+-+..  
T Consensus       248 -----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g---------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--  311 (389)
T COG2956         248 -----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG---------ADAELMLADLIELQEGIDAAQAYLTRQLRR--  311 (389)
T ss_pred             -----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC---------ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence                 4678888999999999999999999998875321         234455666666666778888888877776  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHH---cCChHHHHHHHHHHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDA---IGRLDDAIEILEFVVG  670 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~  670 (727)
                            +|.....+. |......   -|...+.+..++..+.
T Consensus       312 ------~Pt~~gf~r-l~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         312 ------KPTMRGFHR-LMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             ------CCcHHHHHH-HHHhhhccccccchhhhHHHHHHHHH
Confidence                  787664443 3333322   3445566666666554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=1.1e-14  Score=146.29  Aligned_cols=224  Identities=19%  Similarity=0.114  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHH
Q 004848          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (727)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (727)
                      .+.++..+.+++...+     ......+..++.+|.+|...|++++|+..|++++++.     ++++    .+|+.+|.+
T Consensus        42 ~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~----~a~~~lg~~  107 (296)
T PRK11189         42 QEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMA----DAYNYLGIY  107 (296)
T ss_pred             HHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCH----HHHHHHHHH
Confidence            6777777777775321     1224457889999999999999999999999999985     4444    359999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (727)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (727)
                      +...|++++|+..|++++++        +|....++.++|.++...|++++|+..|++++.+.|...     .    ...
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~~  170 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RAL  170 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HHH
Confidence            99999999999999999999        789999999999999999999999999999999876542     0    111


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (727)
Q Consensus       398 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (727)
                      ...+....+++++|+..|.++....     ++.   .+ ..+.++...|++..+ ..+..+.+...... ...|....+|
T Consensus       171 ~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~---~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~  239 (296)
T PRK11189        171 WLYLAESKLDPKQAKENLKQRYEKL-----DKE---QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETY  239 (296)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHhhC-----Ccc---cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHH
Confidence            1223456789999999997765321     111   11 134555566776544 23333332110000 0045667899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          478 VRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      +.+|.++...|++++|+.+|++++..
T Consensus       240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        240 FYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999988

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=3e-13  Score=126.87  Aligned_cols=284  Identities=14%  Similarity=0.152  Sum_probs=226.4

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-ChhHHHH
Q 004848          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASV  434 (727)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~  434 (727)
                      -|.-+.-..+.++|+..|...++..+...        .+...||.+|...|..+.|+...+..+.   ..+. ......+
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~--------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lA  109 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQEDPETF--------EAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLA  109 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHhcCchhh--------HHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHH
Confidence            45556667889999999999998665543        5689999999999999999998765432   1111 2345667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (727)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (727)
                      +..||.-|...|-++.|...|....+.        ......++..|..+|....+|++|+...++...+-.+    ....
T Consensus       110 l~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~~  177 (389)
T COG2956         110 LQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYRV  177 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cchh
Confidence            889999999999999999999988775        3445678899999999999999999999988887433    3356


Q ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004848          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (727)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (727)
                      .++..|..||..+....+.+.|+..+.+|++..++.       ..+-..+|.++...|+|..|++.++.+++-       
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------  243 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKC-------VRASIILGRVELAKGDYQKAVEALERVLEQ-------  243 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-------eehhhhhhHHHHhccchHHHHHHHHHHHHh-------
Confidence            788999999999999999999999999999987766       355667899999999999999999998875       


Q ss_pred             CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (727)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (727)
                      ++.+...++..|..+|.+.|+.++.+.++.++.+.        .+. ..+...++..-....-.+.|..++.+-+..   
T Consensus       244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---  311 (389)
T COG2956         244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRR---  311 (389)
T ss_pred             ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhh---
Confidence            56678899999999999999999999999999886        332 235566777777777778888887776653   


Q ss_pred             hcCCCChhHHHHHHHHHHHH
Q 004848          675 KLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       675 ~~g~~~p~~~~~~~~La~~~  694 (727)
                           +|.....+ +|....
T Consensus       312 -----~Pt~~gf~-rl~~~~  325 (389)
T COG2956         312 -----KPTMRGFH-RLMDYH  325 (389)
T ss_pred             -----CCcHHHHH-HHHHhh
Confidence                 67754443 444433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.68  E-value=3.5e-14  Score=149.19  Aligned_cols=308  Identities=13%  Similarity=0.053  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (727)
                      +...+..|...+..|+ |++|.+...++-+.       .+.|  ...+...+.+....|+++.|..+|.++.+..     
T Consensus        84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~-------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----  148 (398)
T PRK10747         84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADH-------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA-----  148 (398)
T ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc-------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence            3455677888888897 88888666654432       1122  2224444666699999999999999998764     


Q ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (727)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (727)
                      ++..   .......+.++...|++++|+..++++++.        .|....++..++.+|...|++++|+..+.+..+..
T Consensus       149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            2221   122445689999999999999999999988        78889999999999999999999999998887654


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (727)
Q Consensus       381 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (727)
                      .............++..+........+-+....+++..-      ...+....+...++..+...|+.++|...++++++
T Consensus       218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            321100000000122222222222222223333222211      11234466778899999999999999999999987


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHH
Q 004848          461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL  540 (727)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (727)
                      .        .++. ......+.  ...+++++++..+++.++.         +|.....+..+|.++...+++++|..+|
T Consensus       292 ~--------~~~~-~l~~l~~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~~l  351 (398)
T PRK10747        292 R--------QYDE-RLVLLIPR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASLAF  351 (398)
T ss_pred             c--------CCCH-HHHHHHhh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4        2221 22222222  2449999999999998877         4555778899999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          541 QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       541 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                      +++++..|+.        ..+..++.++...|+.++|..+|++++.+.
T Consensus       352 e~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        352 RAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9999886544        456689999999999999999999998764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=3.5e-15  Score=150.72  Aligned_cols=270  Identities=17%  Similarity=0.175  Sum_probs=206.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (727)
Q Consensus       396 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (727)
                      +..|..+++.|+..+|.-.|+.|+.      .+|..+.+|..||.+....++-..|+..+++++++        +|....
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVk------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle  354 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVK------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE  354 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence            5678999999999999999999875      68999999999999999999999999999999999        899999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC-CCC-hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVP-GVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      ++..||..|...|.-.+|+.++.+-+..-.+... ... ......    ...-......+..-.++|-.+....+..   
T Consensus       355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~---  427 (579)
T KOG1125|consen  355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK---  427 (579)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence            9999999999999999999999998776311000 000 000000    0000000011122223333333332211   


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                        .-+.+...||.+|...|+|++|+.+|+.|+..        .+....+|+.||-.+....+.++|+..|.+|+++    
T Consensus       428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----  493 (579)
T KOG1125|consen  428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL----  493 (579)
T ss_pred             --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence              12467889999999999999999999999986        3446789999999999999999999999999999    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHhCChhHHH
Q 004848          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD--VDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~--~~~~~~~La~~~~~~g~~~~A~  704 (727)
                          .|.++.++++||.+|..+|.|++|..+|-.||.+.+...+.....  .-.+|..|-.++...++.+-+.
T Consensus       494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence                999999999999999999999999999999999987643321111  2356666667777777777444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=5.8e-15  Score=142.67  Aligned_cols=300  Identities=17%  Similarity=0.153  Sum_probs=240.7

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                      ....-....|..++...+|.+|+..|..|+++        .|+.+..|.+.+.+++..|+|++|.-.+++.+++.+... 
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~-  117 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS-  117 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-
Confidence            34445677889999999999999999999999        588899999999999999999999999999988876554 


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (727)
Q Consensus       386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (727)
                             ..+...+.++...++..+|...++..         .     +       +    ....|+..+++.+...   
T Consensus       118 -------k~~~r~~~c~~a~~~~i~A~~~~~~~---------~-----~-------~----~~anal~~~~~~~~s~---  162 (486)
T KOG0550|consen  118 -------KGQLREGQCHLALSDLIEAEEKLKSK---------Q-----A-------Y----KAANALPTLEKLAPSH---  162 (486)
T ss_pred             -------ccccchhhhhhhhHHHHHHHHHhhhh---------h-----h-------h----HHhhhhhhhhcccccc---
Confidence                   23666777887777777777766411         0     0       0    1223333333333321   


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                      .  ..|....+...-+.++...|++++|...--..+++         ++....++...|.++...++.+.|+..|++++.
T Consensus       163 s--~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl---------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~  231 (486)
T KOG0550|consen  163 S--REPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL---------DATNAEALYVRGLCLYYNDNADKAINHFQQALR  231 (486)
T ss_pred             c--CCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc---------ccchhHHHHhcccccccccchHHHHHHHhhhhc
Confidence            0  13556677777899999999999999887777777         455678888999999999999999999999999


Q ss_pred             HHHhCCCCC-----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHH
Q 004848          546 IYNDAPGQQ-----STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV  620 (727)
Q Consensus       546 ~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  620 (727)
                      +.|+.....     ......+..-|.-.++.|++..|.++|..++.+-+.    +....+.+|.+.|.+...+|+..+|+
T Consensus       232 ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eai  307 (486)
T KOG0550|consen  232 LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAI  307 (486)
T ss_pred             cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhh
Confidence            987653221     233455677889999999999999999999987443    34456889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      .....|+.+        ++..+.++...|.|+..+++|++|.+.|++|++..
T Consensus       308 sdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  308 SDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999        99999999999999999999999999999999873

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=2.8e-15  Score=151.39  Aligned_cols=269  Identities=16%  Similarity=0.090  Sum_probs=202.8

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004848          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (727)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (727)
                      ..|..+++.|+..+|.-.|+.++...     |.    .+.+|..||.+....++-..|+..+++|+++        +|..
T Consensus       290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P~----haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N  352 (579)
T KOG1125|consen  290 KEGCNLMKNGDLSEAALAFEAAVKQD-----PQ----HAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN  352 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhhC-----hH----HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence            46999999999999999999999875     33    4556999999999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (727)
                      ..++..||..|...|.-.+|+.++.+-+...+.......... .-......-......+..-.++|..+.   ...+. .
T Consensus       353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa---~~~~~-~  427 (579)
T KOG1125|consen  353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAA---RQLPT-K  427 (579)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHHH---HhCCC-C
Confidence            999999999999999999999999999876644321100000 000000000000001222233333332   22221 2


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      ....+...||.+|...|+|++|+.+|+.||..        .|.....|..||-.+..-.+..+|+..|.+|+++      
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------  493 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------  493 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------
Confidence            34567889999999999999999999999998        8999999999999999999999999999999999      


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDS  577 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A  577 (727)
                         .|.++++.++||..++.+|.|++|.++|-.||.+.+...+...   .--.+|..|-.++...++.+-+
T Consensus       494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence               6778899999999999999999999999999999887433221   1123444444555555655533

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.6e-14  Score=139.71  Aligned_cols=291  Identities=19%  Similarity=0.160  Sum_probs=232.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      ..+.-....|..++.... |..|+..|..|+.++         |+.+..|.+.+.+++..|+|++|.-..++.+++..  
T Consensus        47 ~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--  114 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--  114 (486)
T ss_pred             HHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--
Confidence            455667788889999986 999999999999986         44578899999999999999999999999998852  


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------HHHHHHhCC--CCchHHHHHHHHHHHHHHhcCHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL--------EVQKQVLGE--TDPRVGETCRYLAEAHVQALQFSE  368 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~  368 (727)
                         ..+    ..+...+.++..+++..+|...|+..-        .....+...  ..|....+...-+.|+...|++++
T Consensus       115 ---~~~----k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~  187 (486)
T KOG0550|consen  115 ---GFS----KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE  187 (486)
T ss_pred             ---Ccc----ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence               222    236677888888888777776655221        111111111  125556677778999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHH
Q 004848          369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND------QDAEVASVDCSIGDTY  442 (727)
Q Consensus       369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~  442 (727)
                      |...--..+++.+.+.        .+++..|.++...++.+.|+.+|++++.+-....      ..+.....+...|.-.
T Consensus       188 a~~ea~~ilkld~~n~--------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  188 AQSEAIDILKLDATNA--------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA  259 (486)
T ss_pred             HHHHHHHHHhcccchh--------HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence            9999888888876653        5688899999999999999999999986432211      1244566677889999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (727)
                      ++.|+|.+|.+.|..+|.+-..    +....+.+|.++|.+..++|+..+|+..++.++.+         ++....++..
T Consensus       260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~  326 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR  326 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence            9999999999999999998211    12346788999999999999999999999999999         7788999999


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          523 VSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .|.++..+++|++|++.|+++++....
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999998655

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=6.4e-12  Score=127.34  Aligned_cols=456  Identities=13%  Similarity=0.051  Sum_probs=289.7

Q ss_pred             cCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (727)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (727)
                      ........+++|.++...........|+...++.....++.+.++ |++|+...+.-...          .......+..
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~----------~~~~~~~fEK   85 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGAL----------LVINSFFFEK   85 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchh----------hhcchhhHHH
Confidence            344445556667766655566666778899999999999999987 77776443322110          0011122577


Q ss_pred             HHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------
Q 004848          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-------------  338 (727)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------  338 (727)
                      +.|.++++..++|+..++-+-..        +.    .++...|.+++++|+|++|+..|+..++-.             
T Consensus        86 AYc~Yrlnk~Dealk~~~~~~~~--------~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLKGLDRL--------DD----KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHHHHcccHHHHHHHHhccccc--------ch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            99999999999999999822211        11    136678999999999999999999874321             


Q ss_pred             ----------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHH
Q 004848          339 ----------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-------SLEEAADRRLMGLI  401 (727)
Q Consensus       339 ----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~l~~~  401 (727)
                                .+..........+.+++.|.++...|+|.+|++.++++++++.......       ..+...+...|+.+
T Consensus       154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV  233 (652)
T KOG2376|consen  154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV  233 (652)
T ss_pred             HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence                      0111111223567889999999999999999999999988876543321       12345678889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHH--------HHHHHHHHhcCCCChh
Q 004848          402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD-EAGFAYQ--------KALTAFKTNKGENHPA  472 (727)
Q Consensus       402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~--------~al~~~~~~~~~~~~~  472 (727)
                      +..+|+.++|...|...+.  ....+.+..+.+-+++-.+-....-++ .++..++        .++..+.      +..
T Consensus       234 lQ~~Gqt~ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls------~~q  305 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS------KKQ  305 (652)
T ss_pred             HHHhcchHHHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH------HHH
Confidence            9999999999999987764  233445556666666544332222222 1111111        1111110      223


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      ...++.+.+.+.+..+..+.+.+.....        ++..+.....++..-+..... ..+.+|.+++...-+-.+.   
T Consensus       306 k~~i~~N~~lL~l~tnk~~q~r~~~a~l--------p~~~p~~~~~~ll~~~t~~~~-~~~~ka~e~L~~~~~~~p~---  373 (652)
T KOG2376|consen  306 KQAIYRNNALLALFTNKMDQVRELSASL--------PGMSPESLFPILLQEATKVRE-KKHKKAIELLLQFADGHPE---  373 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhC--------CccCchHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhccCCc---
Confidence            3445566666666666665554443321        222233333333333332222 2667777776655443222   


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                         ....+...++.+...+|+++.|+..+...+..+......- .+...+-..+-.++...++.+-|...+.+|+..++.
T Consensus       374 ---~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~  449 (652)
T KOG2376|consen  374 ---KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK  449 (652)
T ss_pred             ---hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence               2245677889999999999999999985553222111100 011223333445677777888899999999998877


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                      .... .+.....+..++.+-.+.|+-++|...+++.++.        +|...+++..|...|... +.+.|.
T Consensus       450 ~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~  511 (652)
T KOG2376|consen  450 QQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAE  511 (652)
T ss_pred             hccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHH
Confidence            5443 3555557778888888899999999999999976        677888888888887765 555554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=4.2e-12  Score=120.36  Aligned_cols=416  Identities=15%  Similarity=0.063  Sum_probs=232.6

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHH
Q 004848          232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH  311 (727)
Q Consensus       232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  311 (727)
                      ....+ |..|+.+++-.+..-+        .+....-..+|.|++.+|+|++|+..|+-+....       ++  ....+
T Consensus        33 ls~rD-ytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~   94 (557)
T KOG3785|consen   33 LSNRD-YTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELG   94 (557)
T ss_pred             Hhccc-chhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--Ccccc
Confidence            33444 8888888777664321        1122345568999999999999999999887632       11  22358


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHH---------HhCCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004848          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQ---------VLGET---------DPRVGETCRYLAEAHVQALQFSEAQKFC  373 (727)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~  373 (727)
                      .+||.|++.+|.|.+|...-.++-+.-..         .+++.         -.+..+-...||.+++..-.|.+|++.|
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvY  174 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVY  174 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998877665322000         00000         0011122234444555555555555555


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF  453 (727)
Q Consensus       374 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  453 (727)
                      .+.+.-.+...        ..-..++.+|..+.-|+-+.+.+.--++      ..|+...+.+..+...+++=+-..|..
T Consensus       175 krvL~dn~ey~--------alNVy~ALCyyKlDYydvsqevl~vYL~------q~pdStiA~NLkacn~fRl~ngr~ae~  240 (557)
T KOG3785|consen  175 KRVLQDNPEYI--------ALNVYMALCYYKLDYYDVSQEVLKVYLR------QFPDSTIAKNLKACNLFRLINGRTAED  240 (557)
T ss_pred             HHHHhcChhhh--------hhHHHHHHHHHhcchhhhHHHHHHHHHH------hCCCcHHHHHHHHHHHhhhhccchhHH
Confidence            55554443322        2234455556555555555554433322      122333333334443333222222222


Q ss_pred             HHHHHHHHHHHhc----------------CCC--------ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          454 AYQKALTAFKTNK----------------GEN--------HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       454 ~~~~al~~~~~~~----------------~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      -......-..+.+                ++.        -...+.+..+|...|..+++..+|..+++..         
T Consensus       241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---------  311 (557)
T KOG3785|consen  241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---------  311 (557)
T ss_pred             HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---------
Confidence            2222111100000                000        0112344555555566666666655544321         


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ---STVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                         .|..+.-+...|.++...|+--...++++-|.+.+.-. |..   -+...-...++.+++...+|++.+.++...-.
T Consensus       312 ---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s  387 (557)
T KOG3785|consen  312 ---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES  387 (557)
T ss_pred             ---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               22333345555666666666555555555444443322 111   11111233566777777888888888776554


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                      .+..        .....+++|.++...|++.+|.++|-+.-.       ++-.+.......||.||...++.+-|-..+-
T Consensus       388 YF~N--------dD~Fn~N~AQAk~atgny~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  388 YFTN--------DDDFNLNLAQAKLATGNYVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             HhcC--------cchhhhHHHHHHHHhcChHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            4321        124567899999999999999998876532       2223344456789999999999999988775


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.-         ...+....+..+|....+.+.+-=|. +.|..+-.+||.
T Consensus       453 k~~---------t~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP~  493 (557)
T KOG3785|consen  453 KTN---------TPSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDPT  493 (557)
T ss_pred             hcC---------CchhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCCC
Confidence            432         23344455666788888888888888 888888888887

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=2.9e-11  Score=119.10  Aligned_cols=390  Identities=11%  Similarity=0.059  Sum_probs=300.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      ...+...|..-..++++..|...|++|+...         ...+..|...+.+-.+......|..++.+|+.+       
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-------  136 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-------  136 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-------
Confidence            3446777888889999999999999999874         112345889999999999999999999999999       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004848          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  424 (727)
                       -|..-..|+....+-..+|+...|.+.|++-+...|..         .+|......-.+....+.|...|++-+.    
T Consensus       137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e---------qaW~sfI~fElRykeieraR~IYerfV~----  202 (677)
T KOG1915|consen  137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE---------QAWLSFIKFELRYKEIERARSIYERFVL----  202 (677)
T ss_pred             -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhe----
Confidence             47888889988888889999999999999999887654         4577777778888999999999988753    


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (727)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (727)
                        .+|. ...|...+..-...|+..-|...|+.|++.+..     +......+...|..-..+..++.|..+|+-|+...
T Consensus       203 --~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~  274 (677)
T KOG1915|consen  203 --VHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI  274 (677)
T ss_pred             --eccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              2443 457788889999999999999999999988533     34445556666777777788888888887777653


Q ss_pred             hcC---------------CCC--------------------CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          505 EKP---------------VPG--------------------VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       505 ~~~---------------~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .+.               ++.                    ...|....+|...-.+....|+.+.-.+.|++|+.-.+.
T Consensus       275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp  354 (677)
T KOG1915|consen  275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP  354 (677)
T ss_pred             CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence            321               000                    012222345666667777789999999999999876554


Q ss_pred             CCCCCccHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMY---YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                      ..........+|..+-.++   ....+.+.+.+.|+.++++.+    .....++.+|...|....++.+...|.+.+-.|
T Consensus       355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A  430 (677)
T KOG1915|consen  355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA  430 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3222222222333333332   346789999999999998743    234567889999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHH
Q 004848          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ  706 (727)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~  706 (727)
                      +-.        .|.. .+......+-.++++++....+|++.++.        .|.+..++...|.+-..+|+.+.|. .
T Consensus       431 IG~--------cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaR-a  492 (677)
T KOG1915|consen  431 IGK--------CPKD-KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRAR-A  492 (677)
T ss_pred             hcc--------CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHH-H
Confidence            887        4543 25556667778889999999999999965        7999999999999999999999999 9


Q ss_pred             HHHHHHHH
Q 004848          707 SLETLLDA  714 (727)
Q Consensus       707 ~l~~al~~  714 (727)
                      .|+-|+.-
T Consensus       493 ifelAi~q  500 (677)
T KOG1915|consen  493 IFELAISQ  500 (677)
T ss_pred             HHHHHhcC
Confidence            99988763

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=4.1e-12  Score=120.47  Aligned_cols=412  Identities=12%  Similarity=0.089  Sum_probs=267.5

Q ss_pred             cccccccccccccccc-cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004848          197 MKKRKGKLHKGQDVSE-AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (727)
Q Consensus       197 ~~~~~~~~~a~~~~~~-~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~  275 (727)
                      +....+|..|+..+.- ...+..+....-+.+|.+++..|+ |++|+..|.-+...      .+++   +....+||.|+
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~~---~el~vnLAcc~  101 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDAP---AELGVNLACCK  101 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCCC---cccchhHHHHH
Confidence            4445566666622211 122222334555668899999997 88888888776541      2222   45578899999


Q ss_pred             HHcCChhHHHHHHHHhcccchh---------ccCccchH--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          276 CSLGQYNEAIPVLEQSIEIPVI---------EEGQEHAL--------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ  338 (727)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  338 (727)
                      +-+|.|.+|.....++-+....         ..+.+...        ....-...||.+.+..-.|++|+..|.+++.- 
T Consensus       102 FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-  180 (557)
T KOG3785|consen  102 FYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-  180 (557)
T ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999988887653210         00111110        01122456777888888899999999888876 


Q ss_pred             HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc--CCHH-------
Q 004848          339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK--GDHE-------  409 (727)
Q Consensus       339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~--g~~~-------  409 (727)
                             +|.....-.++|.||++..-|+-+.+.+.-.+...|+..        .+.+..+...++.  |+..       
T Consensus       181 -------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~l  245 (557)
T KOG3785|consen  181 -------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKEL  245 (557)
T ss_pred             -------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHHH
Confidence                   688888888999999999999999888887777665542        3344444444433  2221       


Q ss_pred             ---------HHHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          410 ---------AALEHLVLASMTMIAN--------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       410 ---------~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                               .+...++.-+-+++..        +.-.....+..++...|..+++..+|+.+++..           .|.
T Consensus       246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~Pt  314 (557)
T KOG3785|consen  246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DPT  314 (557)
T ss_pred             HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CCC
Confidence                     1111111100000000        011223566788888999999999998765432           677


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      .+.-+...|.++...|+--...+.++.|-..++-.......-+.......+|.+++...++++.+.++......+...  
T Consensus       315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd--  392 (557)
T KOG3785|consen  315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND--  392 (557)
T ss_pred             ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence            888888999999999988777777777766655432222222223344567778888889999999888766665433  


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                           -...++++.++...|++.+|.+.|-+.-..       .-.........||+||...++++-|-.++-+.-.    
T Consensus       393 -----D~Fn~N~AQAk~atgny~eaEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----  456 (557)
T KOG3785|consen  393 -----DDFNLNLAQAKLATGNYVEAEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----  456 (557)
T ss_pred             -----chhhhHHHHHHHHhcChHHHHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----
Confidence                 134578999999999999999998765321       1111234556789999999999999887765321    


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                           ..+....+..+|..+...+.+=-|...|...
T Consensus       457 -----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l  487 (557)
T KOG3785|consen  457 -----PSERFSLLQLIANDCYKANEFYYAAKAFDEL  487 (557)
T ss_pred             -----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                 2334445667788788888776666666544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.56  E-value=1.1e-11  Score=131.15  Aligned_cols=320  Identities=14%  Similarity=0.109  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Q 004848          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (727)
Q Consensus       266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (727)
                      .++.....++...|++++|+.+++......         ......+-..|.++..+|++++|...|...+..        
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------   67 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------   67 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence            445567888999999999999998765442         123456888999999999999999999999999        


Q ss_pred             CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHH
Q 004848          346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL-VLAS  419 (727)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~-~~al  419 (727)
                      +|+....+..+..+.....     +.+.-..+|++.....|....         ...+...+..-..|......| ...+
T Consensus        68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~---------~~rl~L~~~~g~~F~~~~~~yl~~~l  138 (517)
T PF12569_consen   68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA---------PRRLPLDFLEGDEFKERLDEYLRPQL  138 (517)
T ss_pred             CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc---------hhHhhcccCCHHHHHHHHHHHHHHHH
Confidence            7888888888888874433     456667777766666554321         122222222222344433333 2221


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--------CCCh-hHHHHHHHHHHHHHHcCCh
Q 004848          420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG--------ENHP-AVASVFVRLADMYNRTGKL  490 (727)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~~g~~  490 (727)
                              ...+..+..++-.+|....+..-....+...+........        ...| ...++++.+|..|...|++
T Consensus       139 --------~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~  210 (517)
T PF12569_consen  139 --------RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY  210 (517)
T ss_pred             --------hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence                    1122334444545554332222222222222222111110        1122 2357889999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (727)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (727)
                      ++|+.++++|+..         .|..+..|...|.++...|++.+|...++.|..+....       -.+-...+..+++
T Consensus       211 ~~Al~~Id~aI~h---------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LR  274 (517)
T PF12569_consen  211 EKALEYIDKAIEH---------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHH
Confidence            9999999999998         56778899999999999999999999999998876543       2344566888899


Q ss_pred             cCCHHHHHHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          571 LGNYSDSYDSFKNAISKLR-AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      .|+.++|...+..-..--. ...+.......+.....|.+|.+.|++..|+..|..+.+++.....
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999887654322100 0000011123445566799999999999999999999999888654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.56  E-value=4e-11  Score=126.95  Aligned_cols=325  Identities=17%  Similarity=0.184  Sum_probs=211.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (727)
                      ..++++.++.++...|+ +++|+++++......         .+....+...|.++..+|++++|...|...+...    
T Consensus         3 ~SE~lLY~~~il~e~g~-~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----   68 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGD-YEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----   68 (517)
T ss_pred             HHHHHHHHHHHHHHCCC-HHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            45678889999999998 999998887755432         4567778899999999999999999999999886    


Q ss_pred             CccchHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH-HHH
Q 004848          300 GQEHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ-KFC  373 (727)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~  373 (727)
                       |++.    ..+..+..+.....     ..+.-..+|++....+        |.. .+...+...+..-..|.... .++
T Consensus        69 -Pdn~----~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s-~~~~rl~L~~~~g~~F~~~~~~yl  134 (517)
T PF12569_consen   69 -PDNY----DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--------PRS-DAPRRLPLDFLEGDEFKERLDEYL  134 (517)
T ss_pred             -CCcH----HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--------ccc-cchhHhhcccCCHHHHHHHHHHHH
Confidence             3332    23555666653332     3455566666554442        221 11112222222222333322 222


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCChhHHHHHHHHHHHH
Q 004848          374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-----------DQDAEVASVDCSIGDTY  442 (727)
Q Consensus       374 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~  442 (727)
                      ...+    ..+-|      .....+-.+|....+..-....+..........           ..+....++++.+|..|
T Consensus       135 ~~~l----~KgvP------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy  204 (517)
T PF12569_consen  135 RPQL----RKGVP------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY  204 (517)
T ss_pred             HHHH----hcCCc------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence            2222    22211      224444444443333222222222222221111           11223467889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (727)
                      ...|++++|+.+++++++.        .|..+..|...|.++-..|++.+|...++.|..+         +...-.+...
T Consensus       205 d~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---------D~~DRyiNsK  267 (517)
T PF12569_consen  205 DYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---------DLADRYINSK  267 (517)
T ss_pred             HHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---------ChhhHHHHHH
Confidence            9999999999999999998        8999999999999999999999999999999888         2233445667


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhH
Q 004848          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (727)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (727)
                      .+..+.+.|+.++|.+.+..-.........+-.  ...+.....|.+|.+.|++..|+..|..+.+.+....+..-.+.
T Consensus       268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH  346 (517)
T PF12569_consen  268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH  346 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            788889999999998877654322111101111  22334456799999999999999999999999988766544333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=2.6e-09  Score=105.93  Aligned_cols=462  Identities=13%  Similarity=0.041  Sum_probs=303.3

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHhcccchhc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  298 (727)
                      .+...+.+|..++.--+|.+.|...+++|..+.+.+..-.  .....+...|+.+|.... .+..|...+++++++.   
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels---  119 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS---  119 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh---
Confidence            3567788999998888899999999999999987763321  234567888999999887 8999999999999986   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQKFCQMA  376 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a  376 (727)
                        ...|......++.|+.++.-..++..|++.+.-..+....+    -.....+++.+  +.++....+..+.......+
T Consensus       120 --q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~----~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~  193 (629)
T KOG2300|consen  120 --QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHI----CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRC  193 (629)
T ss_pred             --cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchh----hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence              44444455668899999999999999998854433322110    11122233332  33444444555566666666


Q ss_pred             HHHHHhcCCCC-CHHHHH-HHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCC-------------ChhH--------H
Q 004848          377 LDIHKDNGSPA-SLEEAA-DRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQ-------------DAEV--------A  432 (727)
Q Consensus       377 l~~~~~~~~~~-~~~~a~-~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~--------~  432 (727)
                      -.+........ ..+... .+..+-. .|...|+...+...+++..........             .+..        .
T Consensus       194 ~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqi  273 (629)
T KOG2300|consen  194 GQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQI  273 (629)
T ss_pred             HHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhh
Confidence            55554443321 111111 2223333 345668877777766654333222111             1111        1


Q ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          433 SVDCSIGDT--YLSLSRYDEAGFAYQKALTAFKTNKGEN--HP----AVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (727)
Q Consensus       433 ~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (727)
                      .++..+-.+  -...|-+++|.++-++++...++....+  .|    .....+-.+..+-.-.|++.+|++....+.+.+
T Consensus       274 caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~  353 (629)
T KOG2300|consen  274 CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWC  353 (629)
T ss_pred             HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            111111111  1245788999999999988766654322  11    112344566777788999999999999999887


Q ss_pred             hcCCCC--CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          505 EKPVPG--VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (727)
Q Consensus       505 ~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (727)
                      .+.- +  --....+.+.+.+|.....-+.++.|...|..|.+.....    ...+.+-.++|..|...|+-+.-.+   
T Consensus       354 ~r~p-~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~---  425 (629)
T KOG2300|consen  354 TRFP-TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK---  425 (629)
T ss_pred             HhCC-chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH---
Confidence            7631 1  1122345677788888888899999999999999876433    2345566789999999887554333   


Q ss_pred             HHHHHHHHhCCCC------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848          583 NAISKLRAIGERK------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (727)
Q Consensus       583 ~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (727)
                       +++.   ++..+      ....+.+++..|...+.++++.||..++.+.+++.....  .+.-.+-.+..|+.+....|
T Consensus       426 -~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslg  499 (629)
T KOG2300|consen  426 -ALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLG  499 (629)
T ss_pred             -HHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhc
Confidence             3332   22221      112355777788888999999999999999999853211  12334446778899999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC--hhHHHHHHHH
Q 004848          657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR--VRSRKAQSLE  709 (727)
Q Consensus       657 ~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~--~~~A~~~~l~  709 (727)
                      +..++.....-++.+..++  +++|-.......+-.+|...|+  .+... +.+.
T Consensus       500 n~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~-e~~~  551 (629)
T KOG2300|consen  500 NTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMEN-EAFR  551 (629)
T ss_pred             chHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHH-HHHH
Confidence            9999999999999998776  5677777777778888999998  55554 4443

>PLN02789 farnesyltranstransferase

Probab=99.51  E-value=7.4e-12  Score=125.29  Aligned_cols=231  Identities=13%  Similarity=0.060  Sum_probs=185.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcCCCCCChHh
Q 004848          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEE  515 (727)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (727)
                      .+-.++...+++++|+..+.+++.+        +|....+|...+.++..+| ++++++.++++++..         .+.
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------npk  104 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------NPK  104 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------CCc
Confidence            3334556678999999999999998        8999999999999999998 689999999999988         344


Q ss_pred             HHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          516 IASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       516 ~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      ...+|...+.++...|+.  ++++.++.+++++.++.       ..+|...+.++...|++++|+.++.++++.      
T Consensus       105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------  171 (320)
T PLN02789        105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE------  171 (320)
T ss_pred             chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------
Confidence            466788899888888874  67889999999887766       578999999999999999999999999886      


Q ss_pred             CCchhHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHH
Q 004848          594 RKSAFFGVALNQMGLACVQR---YSI----NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAI  662 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  662 (727)
                        .+....+|+..+.++...   |.+    ++++.+..+++.+        +|+...+|..++.++..    .++..+|+
T Consensus       172 --d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~  241 (320)
T PLN02789        172 --DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVS  241 (320)
T ss_pred             --CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence              233457888888887665   323    5788888899998        89988999999999988    45567788


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC------------------ChhHHHHHHHHHHHHHhh
Q 004848          663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG------------------RVRSRKAQSLETLLDANS  716 (727)
Q Consensus       663 ~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g------------------~~~~A~~~~l~~al~~~p  716 (727)
                      ..+.+++..        .|....++..|+.+|....                  ..++|. ..++.+-+.||
T Consensus       242 ~~~~~~~~~--------~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~d~  304 (320)
T PLN02789        242 SVCLEVLSK--------DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ-AVCSELEVADP  304 (320)
T ss_pred             HHHHHhhcc--------cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH-HHHHHHHhhCc
Confidence            888887653        5777889999999998643                  235677 77777655555

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.47  E-value=6.2e-12  Score=122.96  Aligned_cols=180  Identities=19%  Similarity=0.153  Sum_probs=148.9

Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      +.....++.+|..+...|++++|+..|++++...+..    .....+++.+|.+|...|++++|+..|+++++..+.   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---  102 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---  102 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence            4457789999999999999999999999998876543    223457889999999999999999999999986432   


Q ss_pred             CCchhHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHhcCCCCccHHH---H--------------HHHH
Q 004848          594 RKSAFFGVALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHPDTLG---V--------------YSNL  648 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--------------~~~l  648 (727)
                        .+....+++.+|.++...        |++++|+..|++++..        +|+...   +              ...+
T Consensus       103 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~~~~~~~~~~~~~~~~  172 (235)
T TIGR03302       103 --HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--------YPNSEYAPDAKKRMDYLRNRLAGKELYV  172 (235)
T ss_pred             --CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence              233445788899999876        7899999999999987        444322   1              2467


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848          649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       649 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (727)
                      |.+|...|++.+|+..|++++...     +.+|....+++.+|.++...|++++|. .+++.+....|
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~  234 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYP  234 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCC
Confidence            889999999999999999999864     556788899999999999999999999 98888877655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.46  E-value=7.3e-12  Score=124.98  Aligned_cols=229  Identities=17%  Similarity=0.177  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      +..+...|.+|...+++++|...|.++.......++....+..+...+.+|... ++++|+.+|++++.++...+  ...
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~  111 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence            344566677888889999999999999998888888888888888888888666 99999999999999998876  245


Q ss_pred             hHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          472 AVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      ..+.++..+|.+|... |++++|+.+|++|+.+++..   ........++..+|.++...|+|++|++.|++........
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence            5678999999999999 99999999999999999873   3456678889999999999999999999999988764433


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARS  628 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  628 (727)
                      ..........+...+.+++..|++..|...+++..........   ......+..|-.++..  ...+++|+.-|....+
T Consensus       189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence            2223344456677888999999999999888887654322221   2234566666666654  3457778777777665


Q ss_pred             H
Q 004848          629 I  629 (727)
Q Consensus       629 ~  629 (727)
                      +
T Consensus       266 l  266 (282)
T PF14938_consen  266 L  266 (282)
T ss_dssp             -
T ss_pred             c
Confidence            5

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.46  E-value=5.7e-09  Score=107.05  Aligned_cols=406  Identities=15%  Similarity=0.117  Sum_probs=251.4

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (727)
                      .+..|+.....+..+|+ ...-...|.+||..++..    .   ...+|-..-......|-.+-++..|++-+++.    
T Consensus       101 mpRIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvt----q---H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----  168 (835)
T KOG2047|consen  101 MPRIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVT----Q---HDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----  168 (835)
T ss_pred             CCHHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchH----h---hccchHHHHHHHHhCCChHHHHHHHHHHHhcC----
Confidence            34466666777777876 777788888887765322    1   12223323333344455566666666666664    


Q ss_pred             CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-------------------------------------Hh
Q 004848          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ-------------------------------------VL  342 (727)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------------~~  342 (727)
                       |.+.       ......+...+++++|.+.|...+..-.-                                     -.
T Consensus       169 -P~~~-------eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi  240 (835)
T KOG2047|consen  169 -PEAR-------EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI  240 (835)
T ss_pred             -HHHH-------HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence             2111       11223344555566665555544322100                                     00


Q ss_pred             CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC--------------------------------HH
Q 004848          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS--------------------------------LE  390 (727)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~  390 (727)
                      +.-.......|..||..|.+.|.|++|...|++++..--...+-..                                ..
T Consensus       241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~  320 (835)
T KOG2047|consen  241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE  320 (835)
T ss_pred             ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence            1112345678899999999999999999999998754321111000                                00


Q ss_pred             HHH----HH---------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004848          391 EAA----DR---------------------RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (727)
Q Consensus       391 ~a~----~~---------------------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (727)
                      ...    .+                     ..+-.+-...|+..+-+..|..|+...............|..+|.+|...
T Consensus       321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~  400 (835)
T KOG2047|consen  321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN  400 (835)
T ss_pred             HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence            000    00                     00111222335566666777776654333333444567889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC----CCCCChH-----hH
Q 004848          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP----VPGVPPE-----EI  516 (727)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~-----~~  516 (727)
                      |+.+.|...|+++...-=.    .-.+.+.+|..-|..-....+++.|+.+.+.|...-...    +.+..+.     ..
T Consensus       401 ~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS  476 (835)
T KOG2047|consen  401 GDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS  476 (835)
T ss_pred             CcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence            9999999999999876111    123457889999999999999999999999887653221    0111111     12


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (727)
                      ..+|..++.+....|-++.-...|++.+++.-..       ..+..+.|..+....-+++|.+.|++.+.+++-      
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~------  543 (835)
T KOG2047|consen  477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFKW------  543 (835)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC------
Confidence            4566677777777888888888888888775444       356678888888888999999999999887542      


Q ss_pred             hhHHHHHHH---HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          597 AFFGVALNQ---MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVV  669 (727)
Q Consensus       597 ~~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al  669 (727)
                      +..-.+|+.   ....-+..-..+.|..+|++|++.+       .|..+. +|...|.+-..-|-...|+..|++|-
T Consensus       544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            222333332   2222223347899999999999862       233333 55566777777788888888887763

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.46  E-value=3.2e-11  Score=117.91  Aligned_cols=195  Identities=14%  Similarity=0.111  Sum_probs=150.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      ....+..++.+|..+...|++++|+..+++++...     ++++....+++.+|.++...|++++|+..|+++++.... 
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence            45567788999999999999999999999998872     224455578899999999999999999999999998432 


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          508 VPGVPPEEIASGLTDVSSIYESM--------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (727)
                           .+....+++.+|.++...        |++++|+..|++++...+....    ...++..++..+.          
T Consensus       103 -----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~~----------  163 (235)
T TIGR03302       103 -----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLRN----------  163 (235)
T ss_pred             -----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHHH----------
Confidence                 444456788899999876        8899999999999988665411    1111111111110          


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH
Q 004848          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD  659 (727)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  659 (727)
                          .              .......+|.++...|++.+|+..|++++..     .+++|....+++.+|.++...|+++
T Consensus       164 ----~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       164 ----R--------------LAGKELYVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             ----H--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCCHH
Confidence                0              1123346788999999999999999999987     2335667889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 004848          660 DAIEILEFVVG  670 (727)
Q Consensus       660 ~A~~~~~~al~  670 (727)
                      +|..+++....
T Consensus       221 ~A~~~~~~l~~  231 (235)
T TIGR03302       221 LAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHh
Confidence            99998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=9.1e-08  Score=95.25  Aligned_cols=464  Identities=13%  Similarity=0.070  Sum_probs=300.6

Q ss_pred             hHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HcCChhHHHHHHHHhcccch
Q 004848          220 LGPLLLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPV  296 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  296 (727)
                      .+.+++.+|..+...|  + ..++|++++.....      ..+..-.+.+...+|.+++ ...+++.|...++++..+..
T Consensus         6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~   78 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK   78 (629)
T ss_pred             HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence            4668889998888887  5 56666665544432      1222344667777887654 57899999999999988764


Q ss_pred             hccCccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004848          297 IEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQ  374 (727)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~  374 (727)
                      ..+.  .-...+.+...|+.+|.... .+..|...+++++++.+.     .| ......+.|+.++.-..++..|.+.+.
T Consensus        79 ~ip~--fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~-----~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen   79 SIPS--FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS-----VPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             cccc--HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            4333  22456777889999999887 889999999999999655     23 244567889999999999999998843


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH----HHHHHHHH-HHHHcCC
Q 004848          375 MALDIHKDNGSPASLEEAADRRL--MGLICETKGDHEAALEHLVLASMTMIANDQDAEVA----SVDCSIGD-TYLSLSR  447 (727)
Q Consensus       375 ~al~~~~~~~~~~~~~~a~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~la~-~~~~~g~  447 (727)
                      -...    ..+........+++.  ++.+.....+..+.......+-.+......++..-    ..|..+-. .|...|+
T Consensus       152 vga~----sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq  227 (629)
T KOG2300|consen  152 VGAE----SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQ  227 (629)
T ss_pred             cccc----ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            3222    222211222223333  34444555566666666666655554443333221    12223322 3455788


Q ss_pred             HHHHHHHHHHHHHHHHHhc-----------CCCChhHH--------HHHHHHHHH--HHHcCChHHHHHHHHHHHHHHhc
Q 004848          448 YDEAGFAYQKALTAFKTNK-----------GENHPAVA--------SVFVRLADM--YNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~-----------~~~~~~~~--------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      ...+...+++.-.....+.           +.+.+...        .++..+-.+  -...|-+++|.++-++++...++
T Consensus       228 ~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ek  307 (629)
T KOG2300|consen  228 VRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEK  307 (629)
T ss_pred             hhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            7777776665443332221           11122111        111111111  12457789999999999988766


Q ss_pred             CCCCC-ChH----hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHHcCCHHHHH
Q 004848          507 PVPGV-PPE----EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ---STVAGIEAQMGVMYYMLGNYSDSY  578 (727)
Q Consensus       507 ~~~~~-~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~  578 (727)
                      .-..+ ..+    .....+-.++.+-.-.|++.+|++....+.+.....++..   ...+.+.+.+|......+.++.|.
T Consensus       308 lkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe  387 (629)
T KOG2300|consen  308 LKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAE  387 (629)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHH
Confidence            42111 111    1123455667777889999999999999999988876532   234566777888888889999999


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--Cc-----cHHHHHHHHHHH
Q 004848          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY--HP-----DTLGVYSNLAGT  651 (727)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-----~~~~~~~~la~~  651 (727)
                      ..|..|.+....     ....+.+-.++|..|...|+-+.-.    ++++..    ++.  ++     ....+++..|..
T Consensus       388 ~hf~~a~k~t~~-----~dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~p~nt~s~ssq~l~a~~~~v~glf  454 (629)
T KOG2300|consen  388 FHFIEATKLTES-----IDLQAFCNLNLAISYLRIGDAEDLY----KALDLI----GPLNTNSLSSQRLEASILYVYGLF  454 (629)
T ss_pred             HHHHHHHHhhhH-----HHHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----CCCCCCcchHHHHHHHHHHHHHHH
Confidence            999999887543     2335677788999999987654322    233321    211  11     123467778888


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+.++++.+|...+.+.+++...  .+.+.-.+..+..|+.+..-.|+..++. +..+-++.+..+
T Consensus       455 af~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~-nmvrpamqlAkK  517 (629)
T KOG2300|consen  455 AFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESR-NMVRPAMQLAKK  517 (629)
T ss_pred             HHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHH-hccchHHHHHhc
Confidence            89999999999999999988521  1223334556778899999999999999 888888777655

>PLN02789 farnesyltranstransferase

Probab=99.43  E-value=3.2e-11  Score=120.72  Aligned_cols=208  Identities=15%  Similarity=0.033  Sum_probs=171.3

Q ss_pred             HHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004848          275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (727)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (727)
                      +...+++++|+..+.+++.+.     +.+    ..+|...+.++..+| ++++++.++.+++..        +|....+|
T Consensus        47 l~~~e~serAL~lt~~aI~ln-----P~~----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW  109 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLN-----PGN----YTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIW  109 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-----chh----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHh
Confidence            445678999999999999886     333    346889999999998 689999999999998        78899999


Q ss_pred             HHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848          354 RYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (727)
Q Consensus       354 ~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (727)
                      .+.+.++...|+.  ++++.++.+++.+.+++.        .+|...+.++...|+++++++++.+++..      ++..
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy--------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N  175 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNY--------HAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRN  175 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCc
Confidence            9999999888874  788999999999988764        67999999999999999999999999863      5666


Q ss_pred             HHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 004848          432 ASVDCSIGDTYLSL---SRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENA  500 (727)
Q Consensus       432 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  500 (727)
                      ..+|+.++.++...   |.+    ++++.+..+++.+        .|....+|..++.++..    .++..+|+..+.++
T Consensus       176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~  247 (320)
T PLN02789        176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV  247 (320)
T ss_pred             hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence            78889999888766   333    4688888899888        79999999999999988    45567788888887


Q ss_pred             HHHHhcCCCCCChHhHHHHHHHHHHHHHhc
Q 004848          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (727)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (727)
                      +..         .+....++..|+.+|...
T Consensus       248 ~~~---------~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        248 LSK---------DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             hcc---------cCCcHHHHHHHHHHHHhh
Confidence            664         333456788888888753

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.42  E-value=7.4e-09  Score=106.26  Aligned_cols=260  Identities=12%  Similarity=0.100  Sum_probs=178.8

Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 004848          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (727)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  425 (727)
                      +|.....|.....  +..|+..+-+..|.+|+...........+  ...|..+|..|...|+.+.|...|+++...  ..
T Consensus       345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y  418 (835)
T KOG2047|consen  345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKV--PY  418 (835)
T ss_pred             CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--Cc
Confidence            5666666665544  45688888899999888743322222223  356889999999999999999999999742  12


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCChh------HHHHHHHHHHHHHHcCChHHHHH
Q 004848          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT----NKGENHPA------VASVFVRLADMYNRTGKLRESKS  495 (727)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~  495 (727)
                      +...+.+.+|+..|..-....+++.|+.+.++|...-..    .++...|.      ...+|..++.+....|-++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            234567889999999999999999999999988764211    11111222      34567777888888899999999


Q ss_pred             HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH
Q 004848          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS  575 (727)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  575 (727)
                      .|++.+.+-         -..+.+..+.|..+....-+++|.+.|++.+.+++-.  ....+-..|......-+..-..+
T Consensus       499 vYdriidLr---------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p--~v~diW~tYLtkfi~rygg~klE  567 (835)
T KOG2047|consen  499 VYDRIIDLR---------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP--NVYDIWNTYLTKFIKRYGGTKLE  567 (835)
T ss_pred             HHHHHHHHh---------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc--cHHHHHHHHHHHHHHHhcCCCHH
Confidence            999998883         2235567788889988899999999999998886422  11122222222233333344789


Q ss_pred             HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (727)
Q Consensus       576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (727)
                      .|..+|++|++.++      +...-.+|...+.+-...|-...|+..|++|-.
T Consensus       568 raRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  568 RARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999999998542      222334555556666677777777777777643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.40  E-value=2.8e-11  Score=120.86  Aligned_cols=231  Identities=17%  Similarity=0.175  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      +..+...|.+|...+++++|..+|.++.....+.   .+....+..+...+.+|... ++++|+.+|++|+.++... |.
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-G~  109 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-GR  109 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-T-
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-Cc
Confidence            3445555677788899999999999999988773   34556677888888887766 9999999999999999887 87


Q ss_pred             CccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          554 QSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                      ....+.++..+|.+|... |++++|+.+|++|++++...+  .+.....++..+|.++...|+|++|++.|++.......
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            788889999999999999 999999999999999998866  33456788999999999999999999999998775322


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLET  710 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~  710 (727)
                      .... .......++..+.|+...|++..|...+++.......   -.+..-......|-..+..  ...+.+|+ ..|..
T Consensus       188 ~~l~-~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~~D~e~f~~av-~~~d~  262 (282)
T PF14938_consen  188 NNLL-KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEEGDVEAFTEAV-AEYDS  262 (282)
T ss_dssp             HCTT-GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHTT-CCCHHHHC-HHHTT
T ss_pred             cccc-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHhCCHHHHHHHH-HHHcc
Confidence            1110 1233346678888999999999999999988754211   1122334445555555542  34566666 66666


Q ss_pred             HHHHhh
Q 004848          711 LLDANS  716 (727)
Q Consensus       711 al~~~p  716 (727)
                      .-.+|+
T Consensus       263 ~~~ld~  268 (282)
T PF14938_consen  263 ISRLDN  268 (282)
T ss_dssp             SS---H
T ss_pred             cCccHH
Confidence            655554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=2.2e-09  Score=99.88  Aligned_cols=226  Identities=17%  Similarity=0.176  Sum_probs=171.6

Q ss_pred             HHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 004848          275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR  354 (727)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  354 (727)
                      +.+..+|..|++++..-.+..     +.    ....+..||.||+...+|..|..+|++.-.+        .|......+
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~-----p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrl   82 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERS-----PR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRL   82 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHH
Confidence            367788999999988766653     11    2335888999999999999999999998887        688888899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004848          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV  434 (727)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  434 (727)
                      ..+..+++.+.+..|+.......+.. .       ....++..-+.+.+..+++..+..+.++.        .....+..
T Consensus        83 Y~AQSLY~A~i~ADALrV~~~~~D~~-~-------L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~  146 (459)
T KOG4340|consen   83 YQAQSLYKACIYADALRVAFLLLDNP-A-------LHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADG  146 (459)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhcCCH-H-------HHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccch
Confidence            99999999999999998877665421 1       11244566677777888888887776543        12345667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC-----
Q 004848          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP-----  509 (727)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----  509 (727)
                      ..+.|.+.++.|+++.|++-|+.+++.        .-.....-++++.++++.++++.|+++..+.++..-+..|     
T Consensus       147 ~in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIG  218 (459)
T KOG4340|consen  147 QINLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIG  218 (459)
T ss_pred             hccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcc
Confidence            788999999999999999999999987        3444566788999999999999999999888775433211     


Q ss_pred             ----CC-----------ChHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 004848          510 ----GV-----------PPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (727)
Q Consensus       510 ----~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (727)
                          +.           .......+++..+.++++.|+++.|.+.+.
T Consensus       219 m~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  219 MTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             ceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                00           012245667778889999999998877654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.37  E-value=1.4e-08  Score=99.17  Aligned_cols=305  Identities=14%  Similarity=0.099  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (727)
                      .....-|..-+..|+|.+|++...++-+..+..        ..++..-+.....+|+++.+-.++.++-+.     ....
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p--------~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~~~  151 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP--------VLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AGDD  151 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch--------HHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CCCc
Confidence            444555666777899999999988855443222        345777788889999999999999887532     1223


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (727)
                      ...+...++.+....|+++.|..-..++++.        .|....++.....+|...|++.....++.+.-+.      +
T Consensus       152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka------~  217 (400)
T COG3071         152 TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA------G  217 (400)
T ss_pred             hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc------c
Confidence            3456678899999999999999999999998        7888899999999999999999998888776544      1


Q ss_pred             CChHhHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          511 VPPEEIASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       511 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                      --+.....-+-+.+..  +...++-..+.. +....+-.+......   ..+...++.-+...|++++|.+...++++..
T Consensus       218 ~l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~  293 (400)
T COG3071         218 LLSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQ  293 (400)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            1122222222222221  122222222222 122222222211111   2445567888999999999999999998752


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                      .      ++   .....++  ...-+++..=++..++.++.        +|+....+..||.+|.+.+.|.+|..+|+.+
T Consensus       294 ~------D~---~L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA  354 (400)
T COG3071         294 W------DP---RLCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAA  354 (400)
T ss_pred             c------Ch---hHHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            1      11   1111122  33566777777778888777        8888899999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          669 VGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      +...         .....+..+|.++.++|+..+|. +.+++++.+.
T Consensus       355 l~~~---------~s~~~~~~la~~~~~~g~~~~A~-~~r~e~L~~~  391 (400)
T COG3071         355 LKLR---------PSASDYAELADALDQLGEPEEAE-QVRREALLLT  391 (400)
T ss_pred             HhcC---------CChhhHHHHHHHHHHcCChHHHH-HHHHHHHHHh
Confidence            9752         33567888999999999999999 9999998554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=9.5e-08  Score=100.63  Aligned_cols=431  Identities=16%  Similarity=0.109  Sum_probs=236.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---hCCCC
Q 004848          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---LGETD  346 (727)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~  346 (727)
                      .|-..|...|.|++|.++.+.-=.+.           .-.+|++.|..+...++.+.|+++|+++-.....+   +.++.
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~~DRiH-----------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p  899 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAETKDRIH-----------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP  899 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhhcccee-----------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence            35566777888888887766433221           12358899999999999999999999863222111   11111


Q ss_pred             ---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHHHHH
Q 004848          347 ---------PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-------------ASLEEAADRRLMGLICET  404 (727)
Q Consensus       347 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~a~~~~~l~~~~~~  404 (727)
                               ......|..+|..+...|+.+.|+.+|..|-+.+....-.             .....-.+.+.+|..|..
T Consensus       900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn  979 (1416)
T KOG3617|consen  900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN  979 (1416)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh
Confidence                     1123467788999999999999999998886654321100             000012467889999999


Q ss_pred             cCCHHHHHHHHHHH------HHHHHhCCCChhHHHH--------HHHHHHHHHHcC-CHHHHHHHHHHH------HHH--
Q 004848          405 KGDHEAALEHLVLA------SMTMIANDQDAEVASV--------DCSIGDTYLSLS-RYDEAGFAYQKA------LTA--  461 (727)
Q Consensus       405 ~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~--------~~~la~~~~~~g-~~~~A~~~~~~a------l~~--  461 (727)
                      .|++.+|+.+|.+|      +++.+.++-.......        ....|..|...| .++.|..+|.+|      +++  
T Consensus       980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen  980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHH
Confidence            99999999999877      3444444332222211        122345555555 666666666543      222  


Q ss_pred             ----------HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHhcCC------------CC---
Q 004848          462 ----------FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC------ENALRIYEKPV------------PG---  510 (727)
Q Consensus       462 ----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~------------~~---  510 (727)
                                ..+-.  +....+..+..-+..+....+|++|..++      +.|+.++....            +.   
T Consensus      1060 ~tqQf~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred             hhcccHHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence                      22212  12233456667788888889999998765      44555443321            11   


Q ss_pred             -CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-----CCCCc---------cHHHHHHHHHHHHHHcCCHH
Q 004848          511 -VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA-----PGQQS---------TVAGIEAQMGVMYYMLGNYS  575 (727)
Q Consensus       511 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~---------~~~~~~~~la~~~~~~g~~~  575 (727)
                       .+......++..+|.++.++|.|..|-+-|.+|-......     .|+..         ..-.+ +.++.-|++.-+|.
T Consensus      1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEi-YImAANyLQtlDWq 1216 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEI-YIMAANYLQTLDWQ 1216 (1416)
T ss_pred             CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccccee-eeehhhhhhhcccc
Confidence             1223456788999999999999999988887764332211     01111         00111 12333344444444


Q ss_pred             HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHH
Q 004848          576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTL--GVYSNLAGTY  652 (727)
Q Consensus       576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~  652 (727)
                      .--+..+..+..+.+-..  -...+..|...|.+-. ...+|++|...+++|.+-..+....++....  .....++.+-
T Consensus      1217 ~~pq~mK~I~tFYTKgqa--fd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk 1294 (1416)
T KOG3617|consen 1217 DNPQTMKDIETFYTKGQA--FDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVK 1294 (1416)
T ss_pred             cChHHHhhhHhhhhcchh--HHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333333333333221000  0111222222222221 2345666666666665544443322221111  1111222211


Q ss_pred             HH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          653 DA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       653 ~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..    +--.+++..-..++-.+.++-.-++.-.....+..|.+-|....+|..|. ..++.+-...|.
T Consensus      1295 ~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1295 VQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHH-HHHHHHhhcCCc
Confidence            11    11112333444444444333222222234567778888899999999999 999998888887

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.33  E-value=4.3e-09  Score=102.66  Aligned_cols=302  Identities=17%  Similarity=0.077  Sum_probs=209.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCcc
Q 004848          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (727)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (727)
                      .....|..-+..|+ |.+|.....++-+.       .+  .-..+|..-+.+...+|+++.|-.++.++.+..     .+
T Consensus        86 ~~~~egl~~l~eG~-~~qAEkl~~rnae~-------~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~  150 (400)
T COG3071          86 KALNEGLLKLFEGD-FQQAEKLLRRNAEH-------GE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD  150 (400)
T ss_pred             HHHHHHHHHHhcCc-HHHHHHHHHHhhhc-------Cc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC
Confidence            44555666677786 77777777665432       22  235567777888899999999999999998873     11


Q ss_pred             chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (727)
Q Consensus       303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (727)
                      .   ...+....+.+....|+++.|..-..++++.        .|....++.....+|...|++.....++.+.-+..--
T Consensus       151 ~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l  219 (400)
T COG3071         151 D---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL  219 (400)
T ss_pred             c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence            1   2345888999999999999999999999998        6888899999999999999999998887765443211


Q ss_pred             cCCCCCHHHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          383 NGSPASLEEAADRRLMGLI--CETKGDHEAALE---HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK  457 (727)
Q Consensus       383 ~~~~~~~~~a~~~~~l~~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  457 (727)
                          ... ...-+...+..  +....+-..+..   +++..   -.....+|   .+...++.-+..+|++++|.+...+
T Consensus       220 ----~~~-e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~---pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~~  288 (400)
T COG3071         220 ----SDE-EAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ---PRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIED  288 (400)
T ss_pred             ----ChH-HHHHHHHHHHHHHHHHHhccccchHHHHHHHhc---cHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHHH
Confidence                111 11112222211  112222222222   22211   11112233   3445567888999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (727)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (727)
                      +++..      -++.   ....++  ...-+++..=++..++.++.         ++..+..+..||.++.+.+.|.+|.
T Consensus       289 ~Lk~~------~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA~  348 (400)
T COG3071         289 ALKRQ------WDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKAS  348 (400)
T ss_pred             HHHhc------cChh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHHH
Confidence            98761      1222   111111  23457777777778887777         3334578999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (727)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (727)
                      .+|+.+++..+..        ..+..+|.++.++|+..+|..++++++....
T Consensus       349 ~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         349 EALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            9999998875543        5678899999999999999999999985543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=1.9e-09  Score=100.39  Aligned_cols=394  Identities=12%  Similarity=-0.024  Sum_probs=237.4

Q ss_pred             ccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004848          198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS  277 (727)
Q Consensus       198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~  277 (727)
                      ....+|..+|+........+|.....+-.+|.+|+...+ |..|-++|++.-..+         |.........+..+++
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH---------PELEQYRLYQAQSLYK   90 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHHH
Confidence            444556667766666677788888888888888888887 888888888876654         4445555566788888


Q ss_pred             cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (727)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (727)
                      .+.+..|+..........         ...-.++..-+-+.+..+++..+....++.-          ....+....+.|
T Consensus        91 A~i~ADALrV~~~~~D~~---------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~in~g  151 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDNP---------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQINLG  151 (459)
T ss_pred             hcccHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchhccch
Confidence            888888888777655421         1122234444555566666666555444311          124567778888


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-C----------
Q 004848          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-D----------  426 (727)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~----------  426 (727)
                      .+.++.|+++.|++-|+.+++...-..        ..-++++.+++..++++.|+++....+..-... +          
T Consensus       152 CllykegqyEaAvqkFqaAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg  223 (459)
T KOG4340|consen  152 CLLYKEGQYEAAVQKFQAALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG  223 (459)
T ss_pred             heeeccccHHHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence            888899999999999998888764332        236778888999999999998887665322110 0          


Q ss_pred             -------C-----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004848          427 -------Q-----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK  494 (727)
Q Consensus       427 -------~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  494 (727)
                             +     ......+++..+.++++.++++.|.+.+...--..+      +...+.++.+++..-. .+++.+..
T Consensus       224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE------~elDPvTLHN~Al~n~-~~~p~~g~  296 (459)
T KOG4340|consen  224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE------EELDPVTLHNQALMNM-DARPTEGF  296 (459)
T ss_pred             CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc------ccCCchhhhHHHHhcc-cCCccccH
Confidence                   0     012345566677788888888888776543221111      2223456666665433 35566665


Q ss_pred             HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHH-HHcC
Q 004848          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMY-YMLG  572 (727)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~-~~~g  572 (727)
                      .-+.-.+.+         .|.-...+.++-.+|++..-|+-|...+-       ..+.... .+...++.+-..+ ..+-
T Consensus       297 ~KLqFLL~~---------nPfP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yly~LLdaLIt~qT  360 (459)
T KOG4340|consen  297 EKLQFLLQQ---------NPFPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYLYDLLDALITCQT  360 (459)
T ss_pred             HHHHHHHhc---------CCCChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHHHHHHHHHHhCCC
Confidence            555555555         11223455666677777665555544433       2211111 1122223333222 3345


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHHHHH-----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004848          573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM-GLACVQ-----RYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (727)
Q Consensus       573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (727)
                      ..++|.+-+......+..           -+..+ +.+...     ......|++-|++++++           ...++.
T Consensus       361 ~pEea~KKL~~La~~l~~-----------kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-----------YLPVlM  418 (459)
T KOG4340|consen  361 APEEAFKKLDGLAGMLTE-----------KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-----------YLPVLM  418 (459)
T ss_pred             CHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence            666666655544332111           11111 111111     11234566677777766           233677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          647 NLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      ..|++|+...+|..+...|+..++.+.
T Consensus       419 a~AkiyW~~~Dy~~vEk~Fr~SvefC~  445 (459)
T KOG4340|consen  419 AQAKIYWNLEDYPMVEKIFRKSVEFCN  445 (459)
T ss_pred             HHHHhhccccccHHHHHHHHHHHhhhc
Confidence            889999999999999999999998763

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.32  E-value=2.1e-06  Score=95.56  Aligned_cols=477  Identities=13%  Similarity=0.039  Sum_probs=294.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      ..+.+.+.+|..++..-+|++.|..++.+++.+.++.  .- ......+...++.++.+.+... |...++++++.... 
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-  131 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-  131 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence            3577889999999988788999999999999987551  11 1223556667899999888887 99999999987632 


Q ss_pred             cCccchHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQL-GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (727)
                        ..+... ..++..+ ...+...+++..|+..++.........   .++ -...+....+.++...+..+++++.++++
T Consensus       132 --~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  132 --YGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA  205 (608)
T ss_pred             --cCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence              111111 1112222 233333379999999999999886531   122 23334455567777788889999999998


Q ss_pred             HHHHHhc--CCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhCCCCh-----------------------
Q 004848          377 LDIHKDN--GSPASLEEAADRRLMGL--ICETKGDHEAALEHLVLASMTMIANDQDA-----------------------  429 (727)
Q Consensus       377 l~~~~~~--~~~~~~~~a~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------------  429 (727)
                      .......  .+........++..+-.  ++...|++..+...+.+.-..+......+                       
T Consensus       206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~  285 (608)
T PF10345_consen  206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG  285 (608)
T ss_pred             HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence            7766543  11123333344444443  45567887787777665543333221111                       


Q ss_pred             -------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCh---------------hHHHHHH
Q 004848          430 -------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG---ENHP---------------AVASVFV  478 (727)
Q Consensus       430 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~~  478 (727)
                                   ..+-+|..-|......+..++|.+++.+++...++...   ...+               ....++.
T Consensus       286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~  365 (608)
T PF10345_consen  286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF  365 (608)
T ss_pred             CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence                         12233444566677778888999999999999887661   1100               1223455


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC----CC
Q 004848          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG----QQ  554 (727)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~  554 (727)
                      .++.+.+-.+++..|...+..+.....+............+++..|..+...|+.+.|+.+|.+..-.......    ..
T Consensus       366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~  445 (608)
T PF10345_consen  366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR  445 (608)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence            66777888999999999999988886653211123345777888999999999999999999855533322111    11


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHH-
Q 004848          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-SAFFGVALNQMGLACV--QRYSINEAVELFEEARSIL-  630 (727)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~-  630 (727)
                      .....+..++..++...+.-......+.+.++......... ......++..+-..+.  ..-...++..++.++++.+ 
T Consensus       446 El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~  525 (608)
T PF10345_consen  446 ELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN  525 (608)
T ss_pred             HHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence            22233445667777766654432222333333222221111 1222222222222221  2223458999999999988 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHHHHhCChhHHHHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD---EKRRLAELLKEAGRVRSRKAQS  707 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~---~~~~La~~~~~~g~~~~A~~~~  707 (727)
                      .....  ..-...++..++..+. .|+..+.......+..+..+.  ++......   +-..++..+...|+.++|. ..
T Consensus       526 ~~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~~  599 (608)
T PF10345_consen  526 NKLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE-EA  599 (608)
T ss_pred             Hhhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence            44322  2333345666666666 899999888888888776554  11122222   3336677789999999998 66


Q ss_pred             HHHHH
Q 004848          708 LETLL  712 (727)
Q Consensus       708 l~~al  712 (727)
                      ..+.-
T Consensus       600 ~~~~~  604 (608)
T PF10345_consen  600 RQQLD  604 (608)
T ss_pred             HHHHH
Confidence            65543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.29  E-value=4.3e-10  Score=124.32  Aligned_cols=260  Identities=13%  Similarity=0.102  Sum_probs=182.8

Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (727)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  423 (727)
                      .-+|....++..|...+...+++++|+..++.+++..|...        ..++.+|.++...+++.++...         
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--------~~yy~~G~l~~q~~~~~~~~lv---------   87 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--------SALYISGILSLSRRPLNDSNLL---------   87 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--------ehHHHHHHHHHhhcchhhhhhh---------
Confidence            33688999999999999999999999999999999887764        4588999999999987666543         


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                                   .++.......++ .++.++...+..        .+..-.+++.||.||.++|++++|...|++++++
T Consensus        88 -------------~~l~~~~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~  145 (906)
T PRK14720         88 -------------NLIDSFSQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA  145 (906)
T ss_pred             -------------hhhhhcccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence                         233344444455 444444443332        3555668899999999999999999999999988


Q ss_pred             HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (727)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (727)
                               ++..+.+++++|..|... +.++|+.++.+|+..+-+. ........+|..  .+.....+++.=..+.++
T Consensus       146 ---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~k  212 (906)
T PRK14720        146 ---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-KQYVGIEEIWSK--LVHYNSDDFDFFLRIERK  212 (906)
T ss_pred             ---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-hcchHHHHHHHH--HHhcCcccchHHHHHHHH
Confidence                     455678899999999888 9999999999988875443 111222222221  122222233322222222


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      .+..   .+   .......+.-+=..|...++|++++.+++.++++        .|....+...|+.||.  +.|.. ..
T Consensus       213 i~~~---~~---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~  275 (906)
T PRK14720        213 VLGH---RE---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HS  275 (906)
T ss_pred             HHhh---hc---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cc
Confidence            2221   11   1123456666778899999999999999999999        8888889999999998  55555 66


Q ss_pred             HHHHHHHHH
Q 004848          664 ILEFVVGIR  672 (727)
Q Consensus       664 ~~~~al~~~  672 (727)
                      .++.++++.
T Consensus       276 ~~ee~l~~s  284 (906)
T PRK14720        276 LLEDYLKMS  284 (906)
T ss_pred             hHHHHHHHh
Confidence            777777653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.27  E-value=8.6e-11  Score=103.98  Aligned_cols=127  Identities=10%  Similarity=0.037  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH
Q 004848          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (727)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  616 (727)
                      ..+|++++++.+..          +..+|.++...|++++|+.+|++++.+        .+....++..+|.++...|++
T Consensus        13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence            45678888776542          456899999999999999999999876        334578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848          617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE  696 (727)
Q Consensus       617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~  696 (727)
                      ++|+..|++++.+        +|....+++++|.++..+|++++|+..|++++.+        .|+.+..+..++.+...
T Consensus        75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence            9999999999998        8999999999999999999999999999999987        57777777777776554


Q ss_pred             h
Q 004848          697 A  697 (727)
Q Consensus       697 ~  697 (727)
                      .
T Consensus       139 l  139 (144)
T PRK15359        139 V  139 (144)
T ss_pred             H
Confidence            3

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.24  E-value=1e-10  Score=103.45  Aligned_cols=112  Identities=18%  Similarity=0.136  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 004848          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (727)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  657 (727)
                      ..+|++++++-        +   ..+..+|.++...|++++|+.+|++++.+        +|....++..+|.++...|+
T Consensus        13 ~~~~~~al~~~--------p---~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLLSVD--------P---ETVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHHHcC--------H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence            45677777752        2   12557899999999999999999999998        89999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +++|+..|++++.+        +|....+++++|.++...|++++|+ ..|++++.++|+
T Consensus        74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~  124 (144)
T PRK15359         74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYA  124 (144)
T ss_pred             HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            99999999999986        6888999999999999999999999 999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.22  E-value=8.8e-10  Score=103.07  Aligned_cols=122  Identities=13%  Similarity=0.134  Sum_probs=106.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004848          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (727)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  650 (727)
                      .++.++++..+++++..        .+.....|..+|.+|...|++++|+..|++++.+        .|+...++..+|.
T Consensus        52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~  115 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT  115 (198)
T ss_pred             chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            56678888888888875        2334678999999999999999999999999999        8888999999999


Q ss_pred             HH-HHcCC--hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          651 TY-DAIGR--LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       651 ~~-~~~g~--~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ++ ...|+  +++|...++++++.        +|....++..||..+...|++++|+ .+++++++++|.
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~  176 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSP  176 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            74 67787  59999999999987        7888899999999999999999999 999999999887

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.21  E-value=1e-09  Score=120.86  Aligned_cols=158  Identities=14%  Similarity=0.091  Sum_probs=117.8

Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 004848          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (727)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (727)
                      +....+...+-+++.+..+.+    ....++..||.+....|.+++|..+++.++++.        +....++..++.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L  130 (694)
T PRK15179         63 AAVHKPAAALPELLDYVRRYP----HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGV  130 (694)
T ss_pred             hhhcchHhhHHHHHHHHHhcc----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHH
Confidence            333344444444555444432    125677788888888888888888888888762        33567778888888


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (727)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (727)
                      .+.+++++|+..+++++..        .|+...+++.+|.++.++|++++|+.+|++++.-        +|+...++..+
T Consensus       131 ~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~  194 (694)
T PRK15179        131 KRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGW  194 (694)
T ss_pred             HHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHH
Confidence            8888888888888888887        7888888888888888888888888888888852        67778888888


Q ss_pred             HHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          691 AELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       691 a~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      |.++...|+.++|. ..|+++++....
T Consensus       195 a~~l~~~G~~~~A~-~~~~~a~~~~~~  220 (694)
T PRK15179        195 AQSLTRRGALWRAR-DVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHcCCHHHHH-HHHHHHHHhhCc
Confidence            88888888888888 888888776554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.21  E-value=7.2e-06  Score=91.39  Aligned_cols=442  Identities=14%  Similarity=0.088  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHHHHHH-HcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYC-SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (727)
Q Consensus       262 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (727)
                      ...+.+...+|.+++ ...+++.|..++++++.+...   .......+.+.+.++.++.+.+... |...++++++....
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET  131 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence            445788899999988 789999999999999988644   3333345667788899999998888 99999999998755


Q ss_pred             HhCCCCchHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          341 VLGETDPRVGETCRYL-AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS  419 (727)
Q Consensus       341 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al  419 (727)
                      .   .+.....++..+ ...+...+++..|++.++.........+++  .....+....+.+....+..+++++...++.
T Consensus       132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~  206 (608)
T PF10345_consen  132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRAI  206 (608)
T ss_pred             c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            1   112222333333 333333479999999999999988755543  3334555666778888898999999998886


Q ss_pred             HHHHhC----CCChhHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------C----------------
Q 004848          420 MTMIAN----DQDAEVASVDCSIGD--TYLSLSRYDEAGFAYQKALTAFKTNKGEN-------H----------------  470 (727)
Q Consensus       420 ~~~~~~----~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~----------------  470 (727)
                      ......    ...+....++..+-.  ++...|++..+...+++.-..........       +                
T Consensus       207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~  286 (608)
T PF10345_consen  207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG  286 (608)
T ss_pred             HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence            655533    113333344444433  45667888888777666655544432210       0                


Q ss_pred             -h----------hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC-C--CCChH--------------hHHHHHHH
Q 004848          471 -P----------AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-P--GVPPE--------------EIASGLTD  522 (727)
Q Consensus       471 -~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~--~~~~~--------------~~~~~~~~  522 (727)
                       +          ..+.+|..-|......+..++|.++++++++..++.. .  .....              ....++..
T Consensus       287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y  366 (608)
T PF10345_consen  287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY  366 (608)
T ss_pred             ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence             0          1223444446666777888899999999999887754 1  00000              01234455


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCch
Q 004848          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQ--QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI---GERKSA  597 (727)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~  597 (727)
                      ++.+..-.+++..|...+..+.......+..  ......+++..|..+...|+.+.|..+|.+..-.....   ......
T Consensus       367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            6777778899999999999988887655332  22345678888999999999999999998555333222   122233


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHH-H
Q 004848          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG-PYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIR-E  673 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~-~  673 (727)
                      ....+..++..++...+.-.....-+...++....... ..+.....++..+-.++..  .-...++...+..+++.. .
T Consensus       447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~  526 (608)
T PF10345_consen  447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN  526 (608)
T ss_pred             HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence            44555666777776655433322223333332222111 1122333333333333322  224458999999999887 3


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848          674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (727)
                      .. + ..--..-++..++..++ .|+..+.. .....++....
T Consensus       527 ~~-~-n~~l~~~~L~lm~~~lf-~~~~~e~~-~~s~~a~~~A~  565 (608)
T PF10345_consen  527 KL-G-NSQLLAILLNLMGHRLF-EGDVGEQA-KKSARAFQLAK  565 (608)
T ss_pred             hh-c-cchHHHHHHHHHHHHHH-cCCHHHHH-HHHHHHHHHHH
Confidence            22 2 22333445566666666 78888877 66666665443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.21  E-value=2.2e-09  Score=118.93  Aligned_cols=236  Identities=13%  Similarity=0.030  Sum_probs=172.6

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 004848          213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (727)
Q Consensus       213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (727)
                      +..-.|....++..++..+...++ +++|+..++.+++..         |.....++.+|.++++.+++.+|...  .++
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l   90 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI   90 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence            445578999999999999999997 999999999888753         55677899999999999999998887  666


Q ss_pred             ccchhccCccch----------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004848          293 EIPVIEEGQEHA----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ  362 (727)
Q Consensus       293 ~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  362 (727)
                      ..........-.          ...-.+++.||.||..+|++++|...|++++++        +|..+.++.++|..|..
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE  162 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence            654221100000          001136889999999999999999999999999        79999999999999999


Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (727)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (727)
                      . ++++|+.++.+|+...-........  -  -.....+...-.+++.-....++.+.    .-.....+..+.-+-..|
T Consensus       163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~--~--e~W~k~~~~~~~d~d~f~~i~~ki~~----~~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        163 E-DKEKAITYLKKAIYRFIKKKQYVGI--E--EIWSKLVHYNSDDFDFFLRIERKVLG----HREFTRLVGLLEDLYEPY  233 (906)
T ss_pred             h-hHHHHHHHHHHHHHHHHhhhcchHH--H--HHHHHHHhcCcccchHHHHHHHHHHh----hhccchhHHHHHHHHHHH
Confidence            9 9999999999999876443321111  0  01112222222333333333332221    112334455666677889


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (727)
                      ....+|++++.+++.++++        .+....+...++.+|.
T Consensus       234 ~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        234 KALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH
Confidence            9999999999999999998        7778888999999887

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=2.3e-07  Score=97.83  Aligned_cols=301  Identities=16%  Similarity=0.161  Sum_probs=168.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (727)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (727)
                      .|.+...+|-.++|..+|++.-.                 +-.|-..|...|.+++|.+..+.--          ....-
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR-----------------~DLlNKlyQs~g~w~eA~eiAE~~D----------RiHLr  858 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKR-----------------YDLLNKLYQSQGMWSEAFEIAETKD----------RIHLR  858 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH-----------------HHHHHHHHHhcccHHHHHHHHhhcc----------ceehh
Confidence            35556677888888888877543                 2235566777888887776654321          23455


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHhcCCC-CCH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALD----IHKDNGSP-ASL-------EEAADRRLMGLICETKGDHEAALEHLVLA  418 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~-~~~-------~~a~~~~~l~~~~~~~g~~~~A~~~~~~a  418 (727)
                      ..|++.|..+...++.+.|+++|+++-.    +.+-..+. ..+       ..-..|...|......|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            7889999999999999999999987621    11110000 000       00134666777778888888888888776


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE  498 (727)
Q Consensus       419 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  498 (727)
                      ..              |+.+-.+.+.+|+.++|....++.             ....+.+.||+.|...|++.+|+.+|.
T Consensus       939 ~D--------------~fs~VrI~C~qGk~~kAa~iA~es-------------gd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  939 KD--------------YFSMVRIKCIQGKTDKAARIAEES-------------GDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hh--------------hhhheeeEeeccCchHHHHHHHhc-------------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            32              233334444445544444332221             122344556666666666666665554


Q ss_pred             HH------HHHHhcCCCCCChHhHHH--------HHHHHHHHHHhcc-cHHHHHHHHHH------------------HHH
Q 004848          499 NA------LRIYEKPVPGVPPEEIAS--------GLTDVSSIYESMN-ELEQAIKLLQK------------------ALK  545 (727)
Q Consensus       499 ~a------l~~~~~~~~~~~~~~~~~--------~~~~la~~~~~~g-~~~~A~~~~~~------------------al~  545 (727)
                      +|      ++++++..   -....+.        -+...|..|...| ..+.|..+|.+                  +++
T Consensus       992 rAqafsnAIRlcKEnd---~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen  992 RAQAFSNAIRLCKEND---MKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence            43      22332210   0000000        0111223333333 34444444332                  334


Q ss_pred             HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHHhC-----------------CCCchhHHHH
Q 004848          546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK------NAISKLRAIG-----------------ERKSAFFGVA  602 (727)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~~-----------------~~~~~~~~~~  602 (727)
                      +........ .-+.++..-+..+....+|++|..++-      .|+.++...+                 ..+......+
T Consensus      1069 lIa~DLd~~-sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1069 LIAKDLDAG-SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred             HHHHhcCCC-CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence            433332222 224566777888888899999877654      4444432211                 1111223468


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      +..+|.++.++|.|..|-+-|.+|-..
T Consensus      1148 Leqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred             HHHHHHHHHhccchHHHHHHHhhhhhH
Confidence            899999999999999999988887544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.20  E-value=1.4e-09  Score=119.76  Aligned_cols=162  Identities=14%  Similarity=0.084  Sum_probs=141.0

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR  396 (727)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  396 (727)
                      +....+....+...+-+++.+.+.     .|....+++.||.+....|.+++|..+++.++++.|+..        .++.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--------~a~~  124 (694)
T PRK15179         58 VLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--------EAFI  124 (694)
T ss_pred             HHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--------HHHH
Confidence            334445555555556666666554     577899999999999999999999999999999998764        6799


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848          397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (727)
Q Consensus       397 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (727)
                      .++.++.+.+++++|+..+++++.      ..|..+..++.+|.++..+|++++|+.+|++++..        +|....+
T Consensus       125 ~~a~~L~~~~~~eeA~~~~~~~l~------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~  190 (694)
T PRK15179        125 LMLRGVKRQQGIEAGRAEIELYFS------GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENG  190 (694)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhh------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHH
Confidence            999999999999999999999975      47788899999999999999999999999999985        7888999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      +..+|.++...|+.++|...|+++++...
T Consensus       191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        191 YVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999863

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.7e-08  Score=92.29  Aligned_cols=210  Identities=14%  Similarity=0.092  Sum_probs=163.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (727)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (727)
                      .+.++.++++...+.........++...++-.+..+....|+.+.|..++++....        .|....+...-|..+.
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lE   97 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLE   97 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHH
Confidence            35566666666655444444345566667777778888899999999999887766        4666677788899999


Q ss_pred             HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004848          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (727)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (727)
                      ..|.+++|+++|+..++-         +|....++-..-.+...+|+.-+|++.+..-++.+...       ..+|..++
T Consensus        98 a~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLa  161 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELA  161 (289)
T ss_pred             HhhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHH
Confidence            999999999999988765         34445556666677788899999999999999888765       58999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDTL  642 (727)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~  642 (727)
                      .+|...|+|++|.-++++.+=+        .|+....+..+|.+++-+|   ++.-|.++|.+++++        .|...
T Consensus       162 eiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~  225 (289)
T KOG3060|consen  162 EIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNL  225 (289)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhH
Confidence            9999999999999999998865        3445677778888887766   678899999999999        77666


Q ss_pred             HHHHHHHHHHHHc
Q 004848          643 GVYSNLAGTYDAI  655 (727)
Q Consensus       643 ~~~~~la~~~~~~  655 (727)
                      .+++.+-.|....
T Consensus       226 ral~GI~lc~~~l  238 (289)
T KOG3060|consen  226 RALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHHHHHH
Confidence            6777666655443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.18  E-value=1.7e-08  Score=105.56  Aligned_cols=227  Identities=18%  Similarity=0.151  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (727)
                      |.....-..++..+...|-...|+..|++.-                 .|.....||...|+..+|..+..+-++.    
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~lek----  453 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELEK----  453 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhcC----
Confidence            3445556778999999999999999998742                 3677889999999999998887776653    


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~  421 (727)
                           +..+..|..+|++....       .+|+++.++.....       +.+...+|......++|.++..+++..+. 
T Consensus       454 -----~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~s-------arA~r~~~~~~~~~~~fs~~~~hle~sl~-  513 (777)
T KOG1128|consen  454 -----DPDPRLYCLLGDVLHDP-------SLYEKAWELSNYIS-------ARAQRSLALLILSNKDFSEADKHLERSLE-  513 (777)
T ss_pred             -----CCcchhHHHhhhhccCh-------HHHHHHHHHhhhhh-------HHHHHhhccccccchhHHHHHHHHHHHhh-
Confidence                 44556666666665544       45555555554332       23466677777789999999999998876 


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (727)
Q Consensus       422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (727)
                           ..+.....|+.+|.+..+.+++..|..+|..++.+        .|+...+|.+++..|...++-.+|...+.+|+
T Consensus       514 -----~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl  580 (777)
T KOG1128|consen  514 -----INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL  580 (777)
T ss_pred             -----cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence                 36777889999999999999999999999999998        89999999999999999999999999999999


Q ss_pred             HHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      +.-.         ....+|-+.-.+....|.+++|+..|.+.+.+.....
T Consensus       581 Kcn~---------~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  581 KCNY---------QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hcCC---------CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            8832         2245677777888899999999999999998876654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.11  E-value=1e-08  Score=95.94  Aligned_cols=120  Identities=14%  Similarity=0.168  Sum_probs=106.5

Q ss_pred             cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 004848          530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (727)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  609 (727)
                      .++.++++..+++++...++.       ...|..+|.+|...|++++|+..|++++.+.        +....++..+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence            677789999999999887666       5789999999999999999999999999872        2346788999987


Q ss_pred             H-HHhCC--HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          610 C-VQRYS--INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       610 ~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      + ...|+  +++|..+++++++.        +|....+++.+|.++...|++++|+.+|++++++.
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4 67777  59999999999999        89999999999999999999999999999999863

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.10  E-value=2e-08  Score=105.08  Aligned_cols=223  Identities=17%  Similarity=0.159  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                      .....++.++...|-...|+..|++.              ..|.....||...|+..+|.....+-++.         +.
T Consensus       399 q~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~lek---------~~  455 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELEK---------DP  455 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---------CC
Confidence            34567888899999999999888765              35667778899999998888877766552         44


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      .+..|..+|.+...       -.+|++|.++...        ..+.+...+|......++|.++.++++.++++.+-.  
T Consensus       456 d~~lyc~LGDv~~d-------~s~yEkawElsn~--------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--  518 (777)
T KOG1128|consen  456 DPRLYCLLGDVLHD-------PSLYEKAWELSNY--------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--  518 (777)
T ss_pred             cchhHHHhhhhccC-------hHHHHHHHHHhhh--------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--
Confidence            44555555555444       4556666666432        224456667777777899999999999999886654  


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                           ..+|+.+|.+..+.+++..|..+|..++.+        .+..+.+|++++.+|...++..+|...+++|++.   
T Consensus       519 -----~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc---  582 (777)
T KOG1128|consen  519 -----LGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC---  582 (777)
T ss_pred             -----hhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc---
Confidence                 468899999999999999999999999886        3445789999999999999999999999999987   


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                           +.....+|.|...+....|.+++|+..|.+.+.+.....
T Consensus       583 -----n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  583 -----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             -----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence                 455556788888888999999999999999988866543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=3.4e-08  Score=90.46  Aligned_cols=195  Identities=16%  Similarity=0.117  Sum_probs=149.0

Q ss_pred             CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH
Q 004848          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (727)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (727)
                      .+.++-+++....+.....-   .-.++...++-.+..+....|+.+-|..++++....++..       ..+...-|..
T Consensus        26 rnseevv~l~~~~~~~~k~~---~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-------~RV~~lkam~   95 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSG---ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-------KRVGKLKAML   95 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhc---ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-------hhHHHHHHHH
Confidence            34555555555555544332   1133456677778888888999999999998877766544       2445566888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004848          568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (727)
Q Consensus       568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (727)
                      +...|++++|+++|+..++-        ++....++-..-.+...+|+.-+|++.+..-++.        .+...++|..
T Consensus        96 lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~e  159 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHE  159 (289)
T ss_pred             HHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHH
Confidence            89999999999999988762        2333445555556677888888999999998888        6777889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC---hhHHHHHHHHHHHHHhhh
Q 004848          648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR---VRSRKAQSLETLLDANSR  717 (727)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~---~~~A~~~~l~~al~~~p~  717 (727)
                      |+.+|...|+|++|.-+|++++-+        .|.....+.+||.++.-+|-   +.-|. ++|.++++++|.
T Consensus       160 LaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~ar-kyy~~alkl~~~  223 (289)
T KOG3060|consen  160 LAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELAR-KYYERALKLNPK  223 (289)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhChH
Confidence            999999999999999999999865        68888888899999887774   55688 999999999984

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.06  E-value=9.9e-09  Score=88.70  Aligned_cols=110  Identities=16%  Similarity=0.087  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      ....+.+|..++..|++++|...|+-...+        ++.....|.+||.++..+|++.+|+..|.+|+.+        
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--------   98 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--------   98 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence            456788999999999999999999998876        4557789999999999999999999999999999        


Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR  688 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~  688 (727)
                      +|+.+..++++|.|+...|+.+.|...|+.++...     ..+|.......
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~-----~~~~~~~~l~~  144 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC-----GEVSEHQILRQ  144 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----ccChhHHHHHH
Confidence            88888999999999999999999999999999986     24566555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.06  E-value=2.3e-09  Score=94.61  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .......+|.++...|++++|+..|++++..        +|....++..+|.++..+|++++|+.++++++.+       
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   80 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-------   80 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            4567889999999999999999999999998        7888899999999999999999999999999976       


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                       +|.....++.+|.++...|++++|. ..|+++++++|.
T Consensus        81 -~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  117 (135)
T TIGR02552        81 -DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGE  117 (135)
T ss_pred             -CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccc
Confidence             6888899999999999999999999 999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.05  E-value=3.5e-09  Score=91.46  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      ....++.+|..+...|++++|..+|+-...+        +|.....|++||.|+..+|++++|+..|.+++.+       
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence            4567788999999999999999999999999        9999999999999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                       +|+++..++++|.++...|+.+.|. +.|+.++...
T Consensus        99 -~~ddp~~~~~ag~c~L~lG~~~~A~-~aF~~Ai~~~  133 (157)
T PRK15363         99 -KIDAPQAPWAAAECYLACDNVCYAI-KALKAVVRIC  133 (157)
T ss_pred             -CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHh
Confidence             6888899999999999999999999 9999999987

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=1.3e-08  Score=94.15  Aligned_cols=168  Identities=15%  Similarity=0.176  Sum_probs=141.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      ..|....+ ..++..+...|+-+.+..+..++...        ++.....+..+|...+..|+|.+|+..+.++..+   
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---  129 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---  129 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence            45555566 88899999999999999988887665        6777777777999999999999999999999988   


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                            .|..+.+|+.+|.+|.+.|++++|...|.+++++.+..+       .+..++|..|.-.|+++.|..++..+..
T Consensus       130 ------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p-------~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         130 ------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP-------SIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence                  455578999999999999999999999999999987663       6789999999999999999999998876


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (727)
                      .        +.....+..+++.+...+|++.+|.....+-+
T Consensus       197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             C--------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            3        22234688899999999999999988765533

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=2e-08  Score=93.01  Aligned_cols=167  Identities=17%  Similarity=0.148  Sum_probs=141.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .|....+ ..++..+...|+-+.+..+..++...         ++.....+..+|...+..|++.+|+..++++..+.+.
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~  132 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT  132 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence            5777777 89999999999999998888886555         2333445666999999999999999999999988766


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      .       ...|..+|.+|.+.|+++.|..-|.+++++...        ...+++++|..+.-.|+++.|..++..+...
T Consensus       133 d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         133 D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAPN--------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            5       578999999999999999999999999998432        3468999999999999999999999999876


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (727)
                              -+....+..+|+.+...+|++.+|...-.+-+
T Consensus       198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             --------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence                    45566788999999999999999998776544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.03  E-value=1.3e-09  Score=85.44  Aligned_cols=77  Identities=34%  Similarity=0.544  Sum_probs=71.1

Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (727)
                      ||+.+.++.++|.+|..+|++++|+.+|++++.+ .+..|+.+|..+.++.++|.++..+|++++|+ +++++++++..
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~-~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL-EYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhc
Confidence            5788999999999999999999999999999999 77788888999999999999999999999999 99999998864

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.03  E-value=1.6e-09  Score=84.85  Aligned_cols=76  Identities=28%  Similarity=0.386  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      +..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.+|..+|++++|+.++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            456789999999999999999999999999999 6666767788899999999999999999999999999999865

...

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.02  E-value=3.1e-06  Score=88.39  Aligned_cols=268  Identities=13%  Similarity=0.104  Sum_probs=144.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (727)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (727)
                      ...|..+...|+++.|+..|-++-.+.                 ..........+|.+|+..++.....         ..
T Consensus       710 e~wg~hl~~~~q~daainhfiea~~~~-----------------kaieaai~akew~kai~ildniqdq---------k~  763 (1636)
T KOG3616|consen  710 EAWGDHLEQIGQLDAAINHFIEANCLI-----------------KAIEAAIGAKEWKKAISILDNIQDQ---------KT  763 (1636)
T ss_pred             HHHhHHHHHHHhHHHHHHHHHHhhhHH-----------------HHHHHHhhhhhhhhhHhHHHHhhhh---------cc
Confidence            344666677777777777776654321                 1112223334555555554433222         12


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (727)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (727)
                      ....|-.++..|...|+|+.|.++|.++-.                ...-...|-+.|++.+|..+-.+..       .+
T Consensus       764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------~~dai~my~k~~kw~da~kla~e~~-------~~  820 (1636)
T KOG3616|consen  764 ASGYYGEIADHYANKGDFEIAEELFTEADL----------------FKDAIDMYGKAGKWEDAFKLAEECH-------GP  820 (1636)
T ss_pred             ccccchHHHHHhccchhHHHHHHHHHhcch----------------hHHHHHHHhccccHHHHHHHHHHhc-------Cc
Confidence            223455677788888888888888866522                2233455667778887776665442       23


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCC---------Ch-hHHHHHHHHHHHHHHcCChHH
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGEN---------HP-AVASVFVRLADMYNRTGKLRE  492 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~---------~~-~~~~~~~~la~~~~~~g~~~~  492 (727)
                      ......|...+.-+-..|+|.+|.++|      .+++.++.+.+-.+         ++ ....+...+|.-|...|+...
T Consensus       821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lka  900 (1636)
T KOG3616|consen  821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKA  900 (1636)
T ss_pred             hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhH
Confidence            344455666666666677777666655      34555544433211         22 234566777888888888888


Q ss_pred             HHHHHHHHH-------------------HHHhcCCCCCChHhHHHHHH------HHHHHHHhcccHHHHHHH------HH
Q 004848          493 SKSYCENAL-------------------RIYEKPVPGVPPEEIASGLT------DVSSIYESMNELEQAIKL------LQ  541 (727)
Q Consensus       493 A~~~~~~al-------------------~~~~~~~~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~------~~  541 (727)
                      |...|-++-                   ++.+...+.+.+...+..|.      .-..++-+.|-.+.|+..      |+
T Consensus       901 ae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd  980 (1636)
T KOG3616|consen  901 AEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFD  980 (1636)
T ss_pred             HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchh
Confidence            877765442                   22222211111111111110      001223333444444432      12


Q ss_pred             HHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      -+.++.+-  +.......+...++..+...|++++|-+.|-+++++
T Consensus       981 ~afdlari--~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  981 FAFDLARI--AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             hHHHHHHH--hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence            22222211  111223356677888899999999999999999875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=2.2e-09  Score=101.16  Aligned_cols=101  Identities=22%  Similarity=0.343  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      +.-+-.-|.-+.+.++|.+|+..|.+|+++        +|..+..|.+.|.+|.++|.++.|++..+.|+.+        
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------  144 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------  144 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence            455666688888999999999999999999        8999999999999999999999999999999987        


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +|.+..+|.+||.+|..+|++++|+ +.|+++|+++|.
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~-~aykKaLeldP~  181 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAI-EAYKKALELDPD  181 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHH-HHHHhhhccCCC
Confidence            8999999999999999999999999 999999999998

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=4.3e-09  Score=99.19  Aligned_cols=121  Identities=22%  Similarity=0.254  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                      .+..+-.-|.-+.+.++|.+|+..|.+||.+        .+..+..|.+.|.+|.++|.++.|++..+.|+.+       
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------  144 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------  144 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence            3455566788889999999999999999997        3345789999999999999999999999999999       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChh
Q 004848          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR  701 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~  701 (727)
                       +|....+|..||.+|..+|++++|++.|++++++        +|++...+.+|..+-.+++...
T Consensus       145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence             9999999999999999999999999999999987        6777777888877777766655

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.01  E-value=3.5e-06  Score=87.99  Aligned_cols=226  Identities=16%  Similarity=0.192  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHH------hcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848          268 LHVIAAIYCSLGQYNEAIPVLEQ------SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (727)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (727)
                      |..-|.+|.+..++++|+++|.+      ++++.+...    |...+..--..|.-+...|+++.|+.+|-.+-.+.+. 
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka-  738 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA-  738 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence            34455666666777778877764      333322111    1222233445677788888888888888776555322 


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~  421 (727)
                                     ........+|.+|+..+...-+.....         ..|-.++.-|...|+|+.|.++|.++-  
T Consensus       739 ---------------ieaai~akew~kai~ildniqdqk~~s---------~yy~~iadhyan~~dfe~ae~lf~e~~--  792 (1636)
T KOG3616|consen  739 ---------------IEAAIGAKEWKKAISILDNIQDQKTAS---------GYYGEIADHYANKGDFEIAEELFTEAD--  792 (1636)
T ss_pred             ---------------HHHHhhhhhhhhhHhHHHHhhhhcccc---------ccchHHHHHhccchhHHHHHHHHHhcc--
Confidence                           112233456777776665443322222         225678888999999999999997662  


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH----
Q 004848          422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC----  497 (727)
Q Consensus       422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~----  497 (727)
                                  ....--.+|.+.|+|.+|.++..+...         .......|...+.-+-..|+|.+|..+|    
T Consensus       793 ------------~~~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti~  851 (1636)
T KOG3616|consen  793 ------------LFKDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG  851 (1636)
T ss_pred             ------------hhHHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence                        122234578889999998877665532         3455667777788888888888887776    


Q ss_pred             --HHHHHHHhcCCCCC---------ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          498 --ENALRIYEKPVPGV---------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       498 --~~al~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                        .+++.++.+....+         ...........+|.-|...|+...|...|-++-+
T Consensus       852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence              45555554432111         1122344566677777777777777777766544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.00  E-value=8.3e-06  Score=88.23  Aligned_cols=343  Identities=12%  Similarity=0.024  Sum_probs=222.8

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (727)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (727)
                      ++...+.+..-+..+...|. +.+||++.-.|-.         + ...+..+...++-++..++..--..+.+..-.-  
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d---------~-~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~--  409 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD---------P-EMAADLLEQLEWQLFNGSELSLLLAWLKALPAE--  409 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC---------H-HHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH--
Confidence            45557777777777888886 8999988766522         1 122344455566666666655444333322110  


Q ss_pred             hccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004848          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQM  375 (727)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (727)
                        .-..+|    ......++......++.+|..+..++....+... .......+......|.+....|++++|+++.+.
T Consensus       410 --~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~  483 (894)
T COG2909         410 --LLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL  483 (894)
T ss_pred             --HHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence              001122    2245567788889999999999988876643310 000123445556678888899999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY  455 (727)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (727)
                      ++...+....   ...+.++..+|.+..-.|++++|..+..++.+..+..+.......+.+..+.++..+|+...|.  -
T Consensus       484 al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~--~  558 (894)
T COG2909         484 ALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE--Q  558 (894)
T ss_pred             HHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH--H
Confidence            9998876643   3345678899999999999999999999999998888888888888888999999999433332  2


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHH
Q 004848          456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ  535 (727)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  535 (727)
                      .++............+.........+.++...-+++.+..-....+++.....  .........++.|+.++...|++++
T Consensus       559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~~  636 (894)
T COG2909         559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLDK  636 (894)
T ss_pred             HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHHH
Confidence            22322222222122333223333334444443447777777777777654422  1122223334689999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (727)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (727)
                      |...+.+...+...........+.++.........+|+..+|.....+..
T Consensus       637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            99999999988876532223444455555556667899999888777643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.00  E-value=3.2e-07  Score=86.67  Aligned_cols=183  Identities=17%  Similarity=0.187  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      ...++..|..++..|+|.+|+..|++++..+     +..+....+.+.+|.+++..|++++|+..+++.+..+..     
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-----   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-----   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence            4677889999999999999999999998874     346778899999999999999999999999999999644     


Q ss_pred             ChHhHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004848          512 PPEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (727)
                       ++....+++.+|.++..+.           ...+|+..|+..+..+|+..                     -..+|...
T Consensus        75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~  132 (203)
T PF13525_consen   75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR  132 (203)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred             -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence             5667788888888876543           34577888888887777652                     12233333


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (727)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (727)
                      +..+...           .+.--..+|..|.+.|.+..|+..++.+++.+     |+.+....++..++.+|..+|..+.
T Consensus       133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence            3332222           23444567899999999999999999998873     2245556688999999999999885


Q ss_pred             HH
Q 004848          661 AI  662 (727)
Q Consensus       661 A~  662 (727)
                      |.
T Consensus       197 a~  198 (203)
T PF13525_consen  197 AD  198 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.97  E-value=1.7e-07  Score=105.16  Aligned_cols=465  Identities=14%  Similarity=0.072  Sum_probs=298.1

Q ss_pred             HHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHH
Q 004848          238 PQKALELALRAAK-SFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (727)
Q Consensus       238 ~~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  316 (727)
                      .++|++++..++. +...+..-.-.|+.   .+.++..+...+++.+|..+=++++++.....+..+|. .+..+..++.
T Consensus       640 ~~dav~~~~~al~k~~~~~~~~~fnp~~---f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv  715 (1236)
T KOG1839|consen  640 LDDAVKYATKALVKLVAVCGPYGFNPAG---FYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSV  715 (1236)
T ss_pred             hHHHHHHHHHHHHHHHhhhcccccCccc---cccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhccccce
Confidence            3457777555543 33333322222332   33347777888999999999999999887777877775 3555777776


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR  396 (727)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  396 (727)
                      .++....+.+|+.+-.+++.+.-.+.+..+|..+..+.+.+..-...+  +-+.+.+..+++-........+...+.. .
T Consensus       716 ~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H  792 (1236)
T KOG1839|consen  716 FPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-H  792 (1236)
T ss_pred             eeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-H
Confidence            777778889999999999998877777667776655544444333333  7778888888887777666666655544 3


Q ss_pred             HHHHHHHH---cCCHHHHHHHHHHHHHHHH----hCCCChh-HHHHHHHHH-HHHH-----Hc---CCHHHHHHHHHHHH
Q 004848          397 LMGLICET---KGDHEAALEHLVLASMTMI----ANDQDAE-VASVDCSIG-DTYL-----SL---SRYDEAGFAYQKAL  459 (727)
Q Consensus       397 ~l~~~~~~---~g~~~~A~~~~~~al~~~~----~~~~~~~-~~~~~~~la-~~~~-----~~---g~~~~A~~~~~~al  459 (727)
                      .+..++..   ......+....-++.....    .....+. ....+..+- ..+.     ..   +.+......+.++.
T Consensus       793 ~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~  872 (1236)
T KOG1839|consen  793 ALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETIL  872 (1236)
T ss_pred             HHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHh
Confidence            33333222   2222222222211210000    0001111 000111110 0000     00   11111111222221


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH------------HHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848          460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA------------LRIYEKPVPGVPPEEIASGLTDVSSIY  527 (727)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~~la~~~  527 (727)
                      ...        -....+...+...-  .|--..+..+....            +.+...+-........+.-....+...
T Consensus       873 ~~~--------~~~~~~~~~~~~~~--~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~  942 (1236)
T KOG1839|consen  873 LKN--------GKSKIAVEKLEKKK--RELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEA  942 (1236)
T ss_pred             hhc--------ccchhHHHHHHHHh--hhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhh
Confidence            110        00000000000000  00000011111110            000000000011112334455567777


Q ss_pred             HhcccHHHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004848          528 ESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (727)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (727)
                      ...|.+.+|.+ .-+++.+..+..+.. +.++..|..++.++...|++++|+.+-.++.-+..+....+++.....+.++
T Consensus       943 ~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen  943 LLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred             hcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence            77888999988 888888877655553 4778889999999999999999999999999998888888888889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE  686 (727)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~  686 (727)
                      +...+..++...|+..+.+++.+..-..+++||..+.+..+++.++...++++.|+.+++.|+.+...++|+.+-.+...
T Consensus      1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred             HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence            99999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCCC
Q 004848          687 KRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNND  721 (727)
Q Consensus       687 ~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~  721 (727)
                      +..++++....+++..|. ...+....+.+. ...+
T Consensus      1102 ~~~~a~l~~s~~dfr~al-~~ek~t~~iy~~qlg~~ 1136 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNAL-EHEKVTYGIYKEQLGPD 1136 (1236)
T ss_pred             HHHHHHHHhhhHHHHHHH-HHHhhHHHHHHHhhCCC
Confidence            999999999999999999 999998888877 4433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.97  E-value=2.5e-08  Score=91.44  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                      .+.+++.+|.++...|++++|+..|++++.+..     .+...+.++.++|.++...|++++|+.+|++++.+       
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-------  101 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-------  101 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            467788999999999999999999999998732     22334578999999999999999999999999998       


Q ss_pred             CCccHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848          637 YHPDTLGVYSNLAGTYD-------AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK  687 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~  687 (727)
                       +|.....+.++|.++.       .+|++++|+..+.+++..+++.++.+++....+.
T Consensus       102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~  158 (168)
T CHL00033        102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQ  158 (168)
T ss_pred             -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence             6776777777777777       8999999999999999999999887766554443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.96  E-value=1.9e-08  Score=88.76  Aligned_cols=110  Identities=17%  Similarity=0.261  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004848          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (727)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (727)
                      .|++++...+..       ......+|..+...|++++|...|++++...        +....++..+|.++...|++++
T Consensus         5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~   69 (135)
T TIGR02552         5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEE   69 (135)
T ss_pred             hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence            455566554433       4667889999999999999999999988752        2246789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      |+.+|++++.+        +|.....++.+|.+|...|++++|+.+|++++++
T Consensus        70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999998        7888889999999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.94  E-value=7.1e-07  Score=86.30  Aligned_cols=188  Identities=12%  Similarity=0.070  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      ...++..|..+...|+|++|+..|++++...     +..+....+.+.+|.+|+..+++++|+..+++.++....     
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-----  101 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----  101 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-----
Confidence            4556778899999999999999999998872     234566677799999999999999999999999999543     


Q ss_pred             ChHhHHHHHHHHHHHHHhcc---------------c---HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC
Q 004848          512 PPEEIASGLTDVSSIYESMN---------------E---LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (727)
                       ++....+++.+|.++...+               +   ..+|+..|++.++.+|+..         +            
T Consensus       102 -~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~---------y------------  159 (243)
T PRK10866        102 -HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ---------Y------------  159 (243)
T ss_pred             -CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh---------h------------
Confidence             6677888999998764443               1   2456677777777766541         0            


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004848          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (727)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (727)
                      ..+|...+..+...           .+.--..+|..|.+.|.|..|+.-++.+++.+     |+.+...+++..++..|.
T Consensus       160 a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~  223 (243)
T PRK10866        160 TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR  223 (243)
T ss_pred             HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence            12232222222221           23334467899999999999999999998873     336677789999999999


Q ss_pred             HcCChHHHHHHHHH
Q 004848          654 AIGRLDDAIEILEF  667 (727)
Q Consensus       654 ~~g~~~~A~~~~~~  667 (727)
                      .+|..++|..+...
T Consensus       224 ~lg~~~~a~~~~~~  237 (243)
T PRK10866        224 QLQLNAQADKVAKI  237 (243)
T ss_pred             HcCChHHHHHHHHH
Confidence            99999999877654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=2.5e-06  Score=77.77  Aligned_cols=221  Identities=14%  Similarity=0.056  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      +..|..-+.+|....+|++|...+.+|....+.+......+..+-..+.+...+..+.++..+|+++..++.+.+   .|
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---sp  107 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SP  107 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---Cc
Confidence            445566677778888999999999999988877777777888899999999999999999999999999999987   56


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      +.+..-...+--....-++++|+.+|++++.+.+.   ++........+...++++.+..++++|-..+.+-..+.... 
T Consensus       108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~-  183 (308)
T KOG1585|consen  108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC-  183 (308)
T ss_pred             chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence            66666666666667788999999999999999877   44455566778889999999999999998888876665544 


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE  624 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  624 (727)
                      .........+.....+|+...+|..|..+++...++    +....+....++.+|-..| ..|+.++....+.
T Consensus       184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            222233344555566777778999999999886654    2222233345555555444 4567776655543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.91  E-value=3.6e-07  Score=86.28  Aligned_cols=183  Identities=18%  Similarity=0.241  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      ...++..|..++..|+|.+|+..|++++...     +..+. ...+.+.+|.+++..|++++|+..|++.+...+.    
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence            5568889999999999999999999999875     33332 3456889999999999999999999999998654    


Q ss_pred             CCchHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          345 TDPRVGETCRYLAEAHVQAL-----------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~  413 (727)
                       ++....+++.+|.+++...           ...+|+..|+..+...|+....                      .+|..
T Consensus        75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~~  131 (203)
T PF13525_consen   75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAKK  131 (203)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHHH
T ss_pred             -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHHH
Confidence             6788899999999887653           2347888888888887765421                      12222


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (727)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (727)
                      .+..+         ....+.--+.+|..|...|.|..|+..++.+++.+.     +.+....++..++..|..+|..+.|
T Consensus       132 ~l~~l---------~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  132 RLAEL---------RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHH---------HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHH---------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence            22211         112233446689999999999999999999988743     3566778899999999999998854


Q ss_pred             H
Q 004848          494 K  494 (727)
Q Consensus       494 ~  494 (727)
                      .
T Consensus       198 ~  198 (203)
T PF13525_consen  198 D  198 (203)
T ss_dssp             H
T ss_pred             H
Confidence            3

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.89  E-value=4.5e-08  Score=97.02  Aligned_cols=258  Identities=16%  Similarity=0.111  Sum_probs=161.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (727)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (727)
                      .-++..|+|..++.-+...      .............+.++|..+|+++..+.-+..          ...|. ..+...
T Consensus         9 rn~fy~G~Y~~~i~e~~~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~   71 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASLK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL   71 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHCH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhcc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence            3456789999888655411      223445566777888999999998766543311          11232 344455


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004848          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (727)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (727)
                      ++..+...++.+.++..++..       +..........+....|.++...|++++|++.+.+.-            ...
T Consensus        72 la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~------------~lE  132 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG------------SLE  132 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT------------CHH
T ss_pred             HHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC------------ccc
Confidence            565554434444443333221       1111121223445667788888999999988886531            024


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      .......+|+..++++.|.+.++.+.++    .+ +   ...+....+++.+..|  ++.+|...|++..+.        
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~e-D---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------  196 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI----DE-D---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------  196 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC----SC-C---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-c---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence            4456778999999999999888775432    21 1   1222233344444455  588999999886543        


Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+....++..+|.++..+|+|++|...+++++.        .+|..++++.+++.+....|+..++..+++.++...+|+
T Consensus       197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence            345567889999999999999999999999874        367888899999999999999955443788888888885

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.87  E-value=1.3e-08  Score=100.83  Aligned_cols=254  Identities=16%  Similarity=0.097  Sum_probs=159.4

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (727)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (727)
                      .-++..|+|..++.-+. .   ...    ...........+.+++..+|+++..+.-...       .. .|. ..+...
T Consensus         9 rn~fy~G~Y~~~i~e~~-~---~~~----~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~~~-l~av~~   71 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-L---KSF----SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-SPE-LQAVRL   71 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-C---HTS----TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-SCC-CHHHHH
T ss_pred             HHHHHhhhHHHHHHHhh-c---cCC----CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-Chh-HHHHHH
Confidence            34567899988886655 1   111    1123345677889999999998876654421       12 222 233345


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004848          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (727)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (727)
                      ++..+...++.+.++..++..+.      ..............|.++...|++++|+.++.+.              ...
T Consensus        72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~l  131 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSL  131 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCH
T ss_pred             HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Ccc
Confidence            55555444455555444332221      1112234456667788888899999998877653              113


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCC
Q 004848          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERK  595 (727)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~  595 (727)
                      +.......+|..+++++.|.+.++.+.++     .++..  .+....+++.+..|  ++.+|...|++..+.+       
T Consensus       132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-------  197 (290)
T PF04733_consen  132 ELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-------  197 (290)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-------
T ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-------
Confidence            45566788999999999999888776543     22221  22223344444455  6889999998864421       


Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI  671 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  671 (727)
                       .....+++.++.++..+|+|++|...+++++..        +|....++.+++.+...+|+. +.+.+++.+....
T Consensus       198 -~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  198 -GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             ---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             -CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence             123577899999999999999999999999876        788888999999999999999 4555666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.84  E-value=5.5e-08  Score=83.59  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                      .+++.+|..+...|++++|+..|.+++..     .++++....+++.+|.++...|++++|+.+|++++...     +.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            46788999999999999999999999886     22234446789999999999999999999999999763     455


Q ss_pred             hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +....++..+|.++...|++++|. ..++++++..|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~  108 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPG  108 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcC
Confidence            556788999999999999999999 999999999997

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.84  E-value=2.1e-06  Score=83.11  Aligned_cols=189  Identities=11%  Similarity=0.074  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      ....++..|..+...|++++|+..|++++.....      .+....+...+|.+|...+++++|+..+++.++..|+.+ 
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-
Confidence            4566778899999999999999999999998433      456677789999999999999999999999999987764 


Q ss_pred             CCccHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC
Q 004848          553 QQSTVAGIEAQMGVMYYMLG---------------NY---SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  614 (727)
                         ....+++.+|.++...+               +.   .+|+..|++.++.++.     ...                
T Consensus       104 ---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~y----------------  159 (243)
T PRK10866        104 ---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQY----------------  159 (243)
T ss_pred             ---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----Chh----------------
Confidence               34567788887765443               22   2344555555544321     111                


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                       ..+|...+..+...           .+.--+.+|..|.+.|.|..|+.-++.+++-+     ++.+...++++.++..|
T Consensus       160 -a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay  222 (243)
T PRK10866        160 -TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY  222 (243)
T ss_pred             -HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence             12333322222222           22233578999999999999999999999876     67788999999999999


Q ss_pred             HHhCChhHHHHHHHHH
Q 004848          695 KEAGRVRSRKAQSLET  710 (727)
Q Consensus       695 ~~~g~~~~A~~~~l~~  710 (727)
                      ...|..++|. .....
T Consensus       223 ~~lg~~~~a~-~~~~~  237 (243)
T PRK10866        223 RQLQLNAQAD-KVAKI  237 (243)
T ss_pred             HHcCChHHHH-HHHHH
Confidence            9999999998 65543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.82  E-value=8.2e-08  Score=88.05  Aligned_cols=122  Identities=17%  Similarity=0.063  Sum_probs=95.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      ......+++.+|.++...|++++|+..|++++.+..      ++.....++.++|.++...|++++|+.+|++++.+.+.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            344678889999999999999999999999999832      23445678999999999999999999999999988655


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (727)
                      .......++.++..+|..+...|+++.|...+.+++..+++.....|.
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            422222334445555555559999999999999999888776555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.81  E-value=7.2e-08  Score=99.33  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (727)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (727)
                      +...|..++..|+|++|+.+|.+++.+.        +....++..+|.+|..+|++++|+..+++++.+        +|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            4566888999999999999999999862        234678999999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                      ...+++.+|.+|..+|++++|+.+|++++.+        +|....+...++.+....
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987        566777777777775555

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.81  E-value=5.9e-07  Score=100.88  Aligned_cols=214  Identities=17%  Similarity=0.199  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      .-....+......|.+.+|.+ .-+++.++...+ +.-++..+..+..|+.++...|++++|+.+-.++.-+.....|..
T Consensus       933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen  933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred             hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence            334455666777888888888 777777766543 555888999999999999999999999999999998888777765


Q ss_pred             c-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          555 S-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       555 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                      . .....+.+++...+..++...|...+.++..+..-..+..++..+.+..+++.++...++++.|+.+++.|+......
T Consensus      1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred             CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence            4 566778899999999999999999999999887666555666678888999999999999999999999999999999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (727)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (727)
                      .++..-.....+..+++++..++++..|+...+....++...+|++|.........+
T Consensus      1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred             cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence            998888888899999999999999999999999999999999999998876654443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.81  E-value=4.2e-08  Score=101.04  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (727)
                      +...|..++..|++++|+.+|.+++.+        +|....+++++|.+|..+|++++|+..+++++.+        +|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            455688889999999999999999998        8888999999999999999999999999999987        688


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ...+++++|.+|..+|++++|+ ..|+++++++|.
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~l~P~  102 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAK-AALEKGASLAPG  102 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence            8899999999999999999999 999999999986

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.81  E-value=1.1e-06  Score=98.23  Aligned_cols=219  Identities=12%  Similarity=0.063  Sum_probs=151.2

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004848          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (727)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  287 (727)
                      +++..+...+|+.+-.|+.....+...++ .++|.+.+++||..+.-.- .......+.+|.+|-..|   |.-+.-.+.
T Consensus      1445 eDferlvrssPNSSi~WI~YMaf~LelsE-iekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~y---G~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSE-IEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAY---GTEESLKKV 1519 (1710)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhhhh-hHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhh---CcHHHHHHH
Confidence            68888889999999999999999999998 9999999999998752110 111244556666665555   677778889


Q ss_pred             HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS  367 (727)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  367 (727)
                      |++|.+.+          ....+|..|..+|...+++++|.++|+..++-+        ......|..+|..++.+++-+
T Consensus      1520 FeRAcqyc----------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--------~q~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1520 FERACQYC----------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--------GQTRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred             HHHHHHhc----------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--------cchhhHHHHHHHHHhcccHHH
Confidence            99998875          123468889999999999999999999988885        245678889999999999889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 004848          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR  447 (727)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  447 (727)
                      .|..++.+||...|...   +   .......+.+-+..|+.+.+...|+..+.      ..|.....|..+...-...|+
T Consensus      1582 aa~~lL~rAL~~lPk~e---H---v~~IskfAqLEFk~GDaeRGRtlfEgll~------ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQE---H---VEFISKFAQLEFKYGDAERGRTLFEGLLS------AYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             HHHHHHHHHHhhcchhh---h---HHHHHHHHHHHhhcCCchhhHHHHHHHHh------hCccchhHHHHHHHHHHccCC
Confidence            99999999988876632   1   12334445555555555555555544332      233333444444444444555


Q ss_pred             HHHHHHHHHHHHHH
Q 004848          448 YDEAGFAYQKALTA  461 (727)
Q Consensus       448 ~~~A~~~~~~al~~  461 (727)
                      .+.+..+|++++.+
T Consensus      1650 ~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHHHHHHHHHhc
Confidence            55555555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.81  E-value=3.3e-07  Score=81.59  Aligned_cols=135  Identities=22%  Similarity=0.248  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (727)
                      +...+..+...+..++ +..+...+++.+.-+      ...+....+...+|.+++..|++++|+..|+.++...     
T Consensus        11 a~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----   78 (145)
T PF09976_consen   11 ASALYEQALQALQAGD-PAKAEAAAEQLAKDY------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----   78 (145)
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHC------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----
Confidence            3455566666667776 888777666666543      2234567788899999999999999999999999853     


Q ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004848          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (727)
Q Consensus       301 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (727)
                      ++ +.....+.+.||.++...|++++|+..++...         ..+....++..+|.+|...|++++|+..|++++
T Consensus        79 ~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   79 PD-PELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            22 23344568899999999999999999986622         135667788899999999999999999999875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.81  E-value=5.4e-07  Score=82.90  Aligned_cols=111  Identities=17%  Similarity=0.250  Sum_probs=89.4

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      ..+..++.+|..+...|++++|+.+|++++.+...     +.....++..+|.++...|++++|+.+|++++..      
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  101 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------  101 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            44667899999999999999999999999986432     2223578999999999999999999999999998      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhcCCC
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGR-------LDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~g~~  679 (727)
                        +|.....+..+|.+|...|+       ++.|+..++++++.+++.+..+
T Consensus       102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence              78888888999999988665       5666666666666665555433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=6.7e-06  Score=75.10  Aligned_cols=224  Identities=14%  Similarity=0.112  Sum_probs=169.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      ....+..|..-+.+|....+|++|..++.+|.+-++.   .......+..+-..+.+...+..+.++..+|++|..++..
T Consensus        27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn---nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN---NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3445566666777888899999999999999988766   3345566778888899999999999999999999999998


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      . |.+..-+.++-.-|.+ ...-++++|+.+|++++.+.......  ......+...++++.+..++++|...+.+-..+
T Consensus       104 ~-GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~--~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~  179 (308)
T KOG1585|consen  104 C-GSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRD--QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA  179 (308)
T ss_pred             h-CCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchH--HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence            8 7666666565554544 45678999999999999987753322  223456777889999999999999999887777


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  708 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  708 (727)
                      ......  .+.....+.....+|....+|..|..+++...++-    +-..++...+..+|-..|. .|+.++.. ..+
T Consensus       180 ~~~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip----~f~~sed~r~lenLL~ayd-~gD~E~~~-kvl  250 (308)
T KOG1585|consen  180 ADKCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP----AFLKSEDSRSLENLLTAYD-EGDIEEIK-KVL  250 (308)
T ss_pred             HHHHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc----cccChHHHHHHHHHHHHhc-cCCHHHHH-HHH
Confidence            666544  45555566677777788889999999999877652    2345677777777776654 67777776 554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=1.2e-05  Score=80.59  Aligned_cols=409  Identities=14%  Similarity=0.105  Sum_probs=247.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--
Q 004848          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV--  341 (727)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--  341 (727)
                      ....+++.|.+|+....+..|++.....+.......   . .......+..-..+....+.++|+.++.-.-++....  
T Consensus        99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~-~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~  174 (696)
T KOG2471|consen   99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---S-SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM  174 (696)
T ss_pred             chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            355678889999999999999998877665432111   1 1112223445556666677788877655433332110  


Q ss_pred             --hCCC----------CchHH-----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848          342 --LGET----------DPRVG-----------ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM  398 (727)
Q Consensus       342 --~~~~----------~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  398 (727)
                        .|..          .|..+           .+....-..|....+...+..-.+.++.+..+.        +.++...
T Consensus       175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LK  246 (696)
T KOG2471|consen  175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLK  246 (696)
T ss_pred             cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHH
Confidence              1100          11111           122222333444445555554444444444322        2457788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCC--CChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCC----
Q 004848          399 GLICETKGDHEAALEHLVLASMTMIAND--QDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGEN----  469 (727)
Q Consensus       399 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~----  469 (727)
                      +..++..|+|.+|.+.+...- +....+  ..|.  ....++++|.+++.+|.|.-+..+|.+|+. .+.++...-    
T Consensus       247 sq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~  325 (696)
T KOG2471|consen  247 SQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK  325 (696)
T ss_pred             HHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence            899999999999998875431 111111  1122  344578999999999999999999999996 444332110    


Q ss_pred             -----ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc------------
Q 004848          470 -----HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE------------  532 (727)
Q Consensus       470 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------  532 (727)
                           ......++++.|..|...|++-.|.++|.++...+...         +..|..+|.+.+...+            
T Consensus       326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---------PrlWLRlAEcCima~~~~l~ee~~~s~s  396 (696)
T KOG2471|consen  326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---------PRLWLRLAECCIMALQKGLLEEGNSSLS  396 (696)
T ss_pred             ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHhhhhhhhhccCCcc
Confidence                 12345788999999999999999999999999998662         4567777777653210            


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHHHhC-------------------------
Q 004848          533 -------------------------------------LEQAIKLLQKALKIYNDA-------------------------  550 (727)
Q Consensus       533 -------------------------------------~~~A~~~~~~al~~~~~~-------------------------  550 (727)
                                                           .+-|.-+++.++-+.+..                         
T Consensus       397 ~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~  476 (696)
T KOG2471|consen  397 RSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEG  476 (696)
T ss_pred             cccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCC
Confidence                                                 123445555555443110                         


Q ss_pred             ---------CCCC--------c--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004848          551 ---------PGQQ--------S--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ  605 (727)
Q Consensus       551 ---------~~~~--------~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  605 (727)
                               .|+.        +        ....++.+.+.+-..+|+.-.|+..-.+.++..+         ...+|..
T Consensus       477 ~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------lS~~~kf  547 (696)
T KOG2471|consen  477 NTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------LSKIYKF  547 (696)
T ss_pred             CCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---------hhhHHHH
Confidence                     0000        0        1244566778888899999999999988887532         2333333


Q ss_pred             H-----HHHHHHhCCHHHHHHHHHHHH------H------HHHHh------cC---CCC-------ccH--HHHHHHHHH
Q 004848          606 M-----GLACVQRYSINEAVELFEEAR------S------ILEQE------CG---PYH-------PDT--LGVYSNLAG  650 (727)
Q Consensus       606 l-----a~~~~~~g~~~~A~~~~~~al------~------~~~~~------~~---~~~-------~~~--~~~~~~la~  650 (727)
                      |     |.++..+.+..+|..++.--+      .      -+...      .+   ...       ++.  ...+++||.
T Consensus       548 LGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~  627 (696)
T KOG2471|consen  548 LGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAA  627 (696)
T ss_pred             HHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHH
Confidence            3     455556777888877765411      0      00100      00   011       111  236789999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          651 TYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       651 ~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                      +|..+|++++|..++..|..+..+.      ....+...-..+-...|+...|. ..+++
T Consensus       628 a~alq~~~dqAk~ll~~aatl~hs~------v~~~A~~lavyidL~~G~~q~al-~~lk~  680 (696)
T KOG2471|consen  628 ALALQGHHDQAKSLLTHAATLLHSL------VNVQATVLAVYIDLMLGRSQDAL-ARLKQ  680 (696)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhhcc------ccHHHHHHHHHHHHhcCCCcchH-HHHHh
Confidence            9999999999999999999875321      22333333344556789999998 65554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.79  E-value=8.4e-07  Score=78.93  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=97.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 004848          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (727)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (727)
                      ..++...+...++..+.-     .++.+....+.+.+|.+++..|++++|...|+.++..      ..++.....+...|
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------APDPELKPLARLRL   91 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCHHHHHHHHHHH
Confidence            578888887777776665     2234556788899999999999999999999999987      23345556778899


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (727)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (727)
                      +.++...|++++|+..++..        ........++..+|.+|...|++++|+..|++|+
T Consensus        92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999998652        1222345567789999999999999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.79  E-value=2.8e-07  Score=84.82  Aligned_cols=108  Identities=17%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (727)
Q Consensus       258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (727)
                      ..+.+..+.+++.+|..+...|++++|+.+|++++.+..     +.+ ....++..+|.++...|++++|+.+|++++..
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPN-DRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445567788899999999999999999999999998742     111 12346899999999999999999999999998


Q ss_pred             HHHHhCCCCchHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHH
Q 004848          338 QKQVLGETDPRVGETCRYLAEAHVQALQ-------FSEAQKFCQMALDI  379 (727)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~  379 (727)
                              .|....++..+|.++...|+       ++.|+..+.++++.
T Consensus       102 --------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~  142 (172)
T PRK02603        102 --------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY  142 (172)
T ss_pred             --------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence                    67778888899999988776       44444444444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.76  E-value=4e-08  Score=74.84  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhh
Q 004848          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG-RVRSRKAQSLETLLDANS  716 (727)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g-~~~~A~~~~l~~al~~~p  716 (727)
                      +.+|..+|.++...|++++|+.+|++++++        +|+...+++++|.++..+| ++++|+ +.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI-EDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH-HHHHHHHHcCc
Confidence            568999999999999999999999999998        7999999999999999999 799999 99999999998

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.6e-07  Score=92.76  Aligned_cols=140  Identities=12%  Similarity=0.174  Sum_probs=118.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004848          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-------AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (727)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (727)
                      ...|..|++.|+|..|...|++|+..+......+.       .....++.+++.|+.++++|.+|+....++|.+     
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----  286 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----  286 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence            45688999999999999999999988763322221       123457899999999999999999999999999     


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                         .|....+++..|.++..+|+++.|+..|++++++        .|.+..+...|..+-.+..++.+...+.|..++..
T Consensus       287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence               8999999999999999999999999999999988        68888888889888888877777644888888876


Q ss_pred             hhh
Q 004848          715 NSR  717 (727)
Q Consensus       715 ~p~  717 (727)
                      -+.
T Consensus       356 ~~~  358 (397)
T KOG0543|consen  356 LAE  358 (397)
T ss_pred             ccc
Confidence            654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.76  E-value=0.00041  Score=75.57  Aligned_cols=340  Identities=11%  Similarity=-0.021  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (727)
                      +.....+..-+..+...|...+|+.+.-.|-+-          ......+...+.-+...++..-=..+    ++..+.-
T Consensus       344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~----------~~aa~lle~~~~~L~~~~~lsll~~~----~~~lP~~  409 (894)
T COG2909         344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDP----------EMAADLLEQLEWQLFNGSELSLLLAW----LKALPAE  409 (894)
T ss_pred             CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCH----------HHHHHHHHhhhhhhhcccchHHHHHH----HHhCCHH
Confidence            344555666666677777788887766554322          22333344445555555554322222    1111000


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP-ASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~  420 (727)
                      .   -...+......+.......++.+|..+..++....+..... .....+...-..|.+....|+++.|+.+.+.++.
T Consensus       410 ~---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         410 L---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             H---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            0   01223344556777788899999999999888776553221 2223345556678888999999999999999986


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH--HHHHHHH
Q 004848          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR--ESKSYCE  498 (727)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~  498 (727)
                      ...... ....+.++..+|.+..-.|++++|..+..++.++.++...  ......+....+.++..+|+..  +....+.
T Consensus       487 ~L~~~~-~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~  563 (894)
T COG2909         487 QLPEAA-YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAEQEKAFN  563 (894)
T ss_pred             hccccc-chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            554432 2334567788999999999999999999999998877642  3444566667788899999332  2223332


Q ss_pred             HHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 004848          499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY  578 (727)
Q Consensus       499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  578 (727)
                      .........  ...+.....+...+...+.   +++.+..-....+.+.......+.....+++.++.+++..|++++|.
T Consensus       564 ~~~~q~l~q--~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~  638 (894)
T COG2909         564 LIREQHLEQ--KPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL  638 (894)
T ss_pred             HHHHHHhhh--cccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence            222221110  0111122233333333333   36777777777776655442333333334468999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (727)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (727)
                      ..+.+...++.... .+....+.++.-.......+|+..+|.....+..
T Consensus       639 ~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         639 AQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             HHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            99999988876544 3333344444444556667899999988887743

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.73  E-value=3.1e-07  Score=78.85  Aligned_cols=103  Identities=18%  Similarity=0.221  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      .+++.+|..+...|++++|+..|.+++....     .......+++.+|.++...|++++|+.+|++++..     .+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            4678899999999999999999999987521     12233568889999999999999999999999987     2334


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      +....++..+|.++...|++++|+.++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            445678999999999999999999999999986

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=1.1e-05  Score=73.26  Aligned_cols=198  Identities=12%  Similarity=0.144  Sum_probs=137.0

Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004848          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (727)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (727)
                      -.+.+++|.++|.++-..+                      ....++..|-..|.++-......+...+.+..|...+.+
T Consensus        26 g~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c   83 (288)
T KOG1586|consen   26 GSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC   83 (288)
T ss_pred             CCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            3457888888888775544                      233445555555666655555556666677777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 004848          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (727)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (727)
                      |.. ++..+|+.+++++++++...+.  -..-+.-+..+|.+|... .++++|+.+|+++-+.+...   ......-..+
T Consensus        84 ykk-~~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~  157 (288)
T KOG1586|consen   84 YKK-VDPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCL  157 (288)
T ss_pred             hhc-cChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHH
Confidence            755 5999999999999999877652  233455667889999875 99999999999999998652   2233344567


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      ...+..-...++|.+|+..|++.....-+..-.....-..+..-|.+++-..+.-.+...+++-.++
T Consensus       158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            7778888889999999999998877654432222233344556677777777766665555555444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.72  E-value=1e-07  Score=77.96  Aligned_cols=99  Identities=25%  Similarity=0.396  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      ++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++.+        .|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence            4678899999999999999999999988        6666678999999999999999999999999875        35


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ....++..++.++...|++++|. ..+..+++.+|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~  100 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDPN  100 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCCC
Confidence            55578999999999999999999 999999988774

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=1.6e-06  Score=87.40  Aligned_cols=151  Identities=18%  Similarity=0.129  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (727)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (727)
                      ...+++..+..++..|++++|+..++..+...     ++++.    .+...+.++...++..+|.+.+++++.+      
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-----P~N~~----~~~~~~~i~~~~nk~~~A~e~~~kal~l------  369 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-----PDNPY----YLELAGDILLEANKAKEAIERLKKALAL------  369 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence            35567888999999999999999999977664     44443    3677899999999999999999999999      


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (727)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  423 (727)
                        +|.......++|.+|.+.|++.+|+..++..+...+...        ..|..|+..|..+|+-.+|...         
T Consensus       370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp--------~~w~~LAqay~~~g~~~~a~~A---------  430 (484)
T COG4783         370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP--------NGWDLLAQAYAELGNRAEALLA---------  430 (484)
T ss_pred             --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc--------hHHHHHHHHHHHhCchHHHHHH---------
Confidence              788888899999999999999999999998887776654        4599999999999988777643         


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (727)
                                    .+..|+..|++++|+..+..+.+..
T Consensus       431 --------------~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         431 --------------RAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             --------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence                          3566778899999999988887763

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=3.1e-06  Score=84.68  Aligned_cols=132  Identities=16%  Similarity=0.042  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHHh
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE-VQKQVL  342 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~  342 (727)
                      ..++...+..++..|+|.+|.+.+...--.. ...+...+ ......|.++|.+++.+|.|.-+..+|.+|++ ...++.
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            5567778999999999999999887543221 11111111 11233478999999999999999999999996 433322


Q ss_pred             CCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc
Q 004848          343 GET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK  405 (727)
Q Consensus       343 ~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~  405 (727)
                      ..-         .....+++++.|..|...|+.-.|.++|.++...+..+.        ..|..|+.++...
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCima  382 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIMA  382 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHH
Confidence            110         123457889999999999999999999999999987764        5688888887643

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=4.6e-07  Score=89.51  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=117.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS------LELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (727)
                      ..+...-..|+.+++.|+ |..|+..|++|+..+......++.      .....++.+++.||.++++|.+|+..+.++|
T Consensus       206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345567788999999998 999999999999998755332222      2345678999999999999999999999999


Q ss_pred             ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH-HH
Q 004848          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA-QK  371 (727)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~  371 (727)
                      .+.     +++    ..++++.|.++..+|+|+.|+..|++++++        .|.+..+...|..+..+..++.+. .+
T Consensus       285 e~~-----~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk  347 (397)
T KOG0543|consen  285 ELD-----PNN----VKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKK  347 (397)
T ss_pred             hcC-----CCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            985     333    345999999999999999999999999999        788888888888887766655544 67


Q ss_pred             HHHHHHHHHH
Q 004848          372 FCQMALDIHK  381 (727)
Q Consensus       372 ~~~~al~~~~  381 (727)
                      +|..++....
T Consensus       348 ~y~~mF~k~~  357 (397)
T KOG0543|consen  348 MYANMFAKLA  357 (397)
T ss_pred             HHHHHhhccc
Confidence            7777776554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=1.4e-06  Score=87.77  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=129.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      +....+++..+..++..|++++|+..++..+..        .|++...+...+.++...++..+|.+.+++++.+     
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----  369 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----  369 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence            455678888999999999999999999997776        7899999999999999999999999999999998     


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                          .|.......++|..|.+.|++.+|+..++..+.-.+..       ...|..|+..|..+|+..+|...        
T Consensus       370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A--------  430 (484)
T COG4783         370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLA--------  430 (484)
T ss_pred             ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHH--------
Confidence                34446678899999999999999999998887766555       46888999999999987665433        


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                                       .+..|...|++++|+..+..+.+.
T Consensus       431 -----------------~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         431 -----------------RAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             -----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence                             456667789999999999998876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.68  E-value=3.8e-06  Score=94.10  Aligned_cols=222  Identities=11%  Similarity=0.139  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc
Q 004848          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (727)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (727)
                      ..+.|++.+.-        +|.....|......+...++.++|.+.+++||....    -........+|..+-++...-
T Consensus      1443 saeDferlvrs--------sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN----~REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--------SPNSSILWIRYMAFHLELSEIEKARKIAERALKTIN----FREEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred             CHHHHHHHHhc--------CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC----cchhHHHHHHHHHHHhHHHhh
Confidence            34445555544        899999999999999999999999999999998741    111233344555555555555


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 004848          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (727)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (727)
                      |.-+.-.+.|++|-+.+...        .++..|..+|...+.+++|.++|+..++.+++        ...+|..+|..+
T Consensus      1511 G~eesl~kVFeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFL 1574 (1710)
T ss_pred             CcHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHH
Confidence            66677788888888876543        57888999999999999999999999887642        346888899999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848          611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (727)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (727)
                      +.+.+-+.|..++.+|++.+.+      ..........|.+-++.|+.+.+..+|+-.+..        +|...+.|.-+
T Consensus      1575 l~~ne~~aa~~lL~rAL~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVY 1640 (1710)
T ss_pred             hcccHHHHHHHHHHHHHhhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHH
Confidence            9999999999999999987322      235667788899999999999999999988854        68888888888


Q ss_pred             HHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          691 AELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       691 a~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      ...-.+.|+.+-+. ..|++++.+.
T Consensus      1641 id~eik~~~~~~vR-~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVR-DLFERVIELK 1664 (1710)
T ss_pred             HHHHHccCCHHHHH-HHHHHHHhcC
Confidence            88888899999888 9999888764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.67  E-value=3.4e-07  Score=89.03  Aligned_cols=106  Identities=14%  Similarity=0.123  Sum_probs=91.4

Q ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          601 VALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       601 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      ..++..|..+ +..|+|++|+..|+..++.     .|+.+....+++.+|.+|...|++++|+..|++++..+     ++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            4455556554 5679999999999999998     12233346799999999999999999999999999875     77


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +|...++++.+|.++..+|++++|. ..|+++++..|+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~  249 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPG  249 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence            8889999999999999999999999 999999999997

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.65  E-value=1.8e-07  Score=71.24  Aligned_cols=64  Identities=30%  Similarity=0.443  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG-RLDDAIEILEFVVGI  671 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  671 (727)
                      +.+|..+|.++...|++++|+.+|.+++++        +|....+++++|.+|..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            568999999999999999999999999999        8999999999999999999 799999999999986

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.65  E-value=1.5e-07  Score=74.71  Aligned_cols=82  Identities=24%  Similarity=0.376  Sum_probs=68.6

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          612 QRYSINEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (727)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (727)
                      .+|+++.|+.+|+++++.        .|.  ....++.+|.||...|++++|+.++++ ...        ++......+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l   63 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYL   63 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHH
Confidence            368999999999999998        442  555788899999999999999999999 443        4666788889


Q ss_pred             HHHHHHHhCChhHHHHHHHHHH
Q 004848          690 LAELLKEAGRVRSRKAQSLETL  711 (727)
Q Consensus       690 La~~~~~~g~~~~A~~~~l~~a  711 (727)
                      +|.++..+|++++|+ ..|+++
T Consensus        64 ~a~~~~~l~~y~eAi-~~l~~~   84 (84)
T PF12895_consen   64 LARCLLKLGKYEEAI-KALEKA   84 (84)
T ss_dssp             HHHHHHHTT-HHHHH-HHHHHH
T ss_pred             HHHHHHHhCCHHHHH-HHHhcC
Confidence            999999999999999 998875

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.4e-05  Score=74.36  Aligned_cols=249  Identities=13%  Similarity=0.047  Sum_probs=161.9

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (727)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (727)
                      -++..|.|..++....+.-...   .      .......+.+.|..+|.+...+.-...+       . .+. ..+...+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~---~------~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-~~~-lqAvr~~   78 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSK---T------DVELDVYMYRAYLALGQYQIVISEIKEG-------K-ATP-LQAVRLL   78 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhcccc---c------hhHHHHHHHHHHHHcccccccccccccc-------c-CCh-HHHHHHH
Confidence            3556677777666554432211   1      1234667888888888877655433221       1 122 2233444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      +.+...-++.+.-+.-+.+-+..      .........+..-|.+|...|++++|+........+              .
T Consensus        79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E  138 (299)
T KOG3081|consen   79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E  138 (299)
T ss_pred             HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence            55555555555444443333222      112233345555678899999999999888773333              2


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER  594 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~  594 (727)
                      +...-..++.++.+++-|...++++.++..+.         ++..||..|...    +.+..|.-+|++.-+       +
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k  202 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K  202 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c
Confidence            33334567888999999999999998886543         455566665543    356666666665443       2


Q ss_pred             CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      .++ ...+++.++.|++.+|+|++|...++.++..        ++...+++.++..+-...|...++..-+-.-+.
T Consensus       203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            233 4578899999999999999999999999987        777788999999999999999888766554444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=8.7e-06  Score=73.87  Aligned_cols=197  Identities=15%  Similarity=0.116  Sum_probs=138.6

Q ss_pred             HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004848          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (727)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (727)
                      -.+++++|.++|.++-.+                       |...+++..|-..|.++-++.... +..+..+..|...+
T Consensus        26 g~~k~eeAadl~~~Aan~-----------------------yklaK~w~~AG~aflkaA~~h~k~-~skhDaat~YveA~   81 (288)
T KOG1586|consen   26 GSNKYEEAAELYERAANM-----------------------YKLAKNWSAAGDAFLKAADLHLKA-GSKHDAATTYVEAA   81 (288)
T ss_pred             CCcchHHHHHHHHHHHHH-----------------------HHHHHhHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHH
Confidence            345677777777666544                       334445555666666666665555 55556666776667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004848          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGV  644 (727)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  644 (727)
                      .+|.+ ++..+|..+++++++++...+.-.  .-+.-+..+|.+|..- .++++|+.+|++|-+.+.....  ....-.+
T Consensus        82 ~cykk-~~~~eAv~cL~~aieIyt~~Grf~--~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--~ssANKC  156 (288)
T KOG1586|consen   82 NCYKK-VDPEEAVNCLEKAIEIYTDMGRFT--MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--VSSANKC  156 (288)
T ss_pred             HHhhc-cChHHHHHHHHHHHHHHHhhhHHH--HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--hhhHHHH
Confidence            76655 499999999999999998876543  2355677889888865 8999999999999998765322  2223346


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD----VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +...|..-...++|.+|+..|++.....     -+++-    .-.-++.-|.++...++.-.+. ..+++..+++|.
T Consensus       157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s-----~~n~LLKys~KdyflkAgLChl~~~D~v~a~-~ALeky~~~dP~  227 (288)
T KOG1586|consen  157 LLKVAQYAAQLEQYSKAIDIYEQVARSS-----LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ-RALEKYQELDPA  227 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHhHHHHHHHHHHHHhHhcccHHHHH-HHHHHHHhcCCc
Confidence            7777888888999999999999887542     11221    1233455677777778888888 999999999997

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.5e-05  Score=74.09  Aligned_cols=255  Identities=15%  Similarity=0.111  Sum_probs=168.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (727)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (727)
                      +-++..|+|..++..-.+..       ..+........+.+.|..+|.+..-+.-...+-           .....+...
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-----------~~~lqAvr~   77 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFS-------SSKTDVELDVYMYRAYLALGQYQIVISEIKEGK-----------ATPLQAVRL   77 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhc-------cccchhHHHHHHHHHHHHccccccccccccccc-----------CChHHHHHH
Confidence            44556788887776655432       111334455667788888888765544332211           111233344


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004848          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (727)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (727)
                      ++.....-++.+.-+.-+.+-+...       ...........-|.+|...|++++|++.......+            .
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~~-------~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------E  138 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVADS-------TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------E  138 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHhh-------ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------H
Confidence            4554444444444333333322221       11122334555678899999999999988764333            2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcC
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      +...-..++.++.+++-|...++++.++..          ..++..||..+..    .+++.+|.-+|++.-+.      
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------  202 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDE----------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------  202 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------
Confidence            333345678888899999988888877632          2456666666654    23577787777776553      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                        .+-...++..+|.|+..+|+|++|...++.++.-        ++.+++++.++..+-...|.-.++..+++.++...+
T Consensus       203 --~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  203 --TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             --cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence              4555668899999999999999999999999964        677788999999999999999888877888888888


Q ss_pred             hh
Q 004848          716 SR  717 (727)
Q Consensus       716 p~  717 (727)
                      |+
T Consensus       273 p~  274 (299)
T KOG3081|consen  273 PE  274 (299)
T ss_pred             Cc
Confidence            87

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.62  E-value=0.0003  Score=69.04  Aligned_cols=303  Identities=15%  Similarity=0.074  Sum_probs=208.0

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchH
Q 004848          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL  305 (727)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  305 (727)
                      ..|......|+ -..|.....++-+++..    +. +  ..++..-++.-.-.|+|+.|.+-|+..+.-         |.
T Consensus        89 StGliAagAGd-a~lARkmt~~~~~llss----Dq-e--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PE  151 (531)
T COG3898          89 STGLIAAGAGD-ASLARKMTARASKLLSS----DQ-E--PLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PE  151 (531)
T ss_pred             hhhhhhhccCc-hHHHHHHHHHHHhhhhc----cc-h--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hH
Confidence            34444555665 67777777777665422    11 1  333445577778899999999999998764         23


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                      .....+..|-.--...|..+.|+.+-+.+...        -|....++...-...+..|+++.|+++.+.......-..+
T Consensus       152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~  223 (531)
T COG3898         152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD  223 (531)
T ss_pred             HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence            33333444444456789999999999999888        5777888888888889999999999999887665432222


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (727)
Q Consensus       386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (727)
                      ......+..+...+... ..-+...|...-.++.+      ..++.+..-..-+..++..|+..++-.+++.+-+.    
T Consensus       224 ~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~K------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~----  292 (531)
T COG3898         224 VAERSRAVLLTAKAMSL-LDADPASARDDALEANK------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA----  292 (531)
T ss_pred             hHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhh------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc----
Confidence            11122222222222222 22356667666666643      45666666677789999999999999999988775    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                        +.||..       +.+|....--+.++.-++++-.+..-      .++.......++..-+..|++..|..--+.+..
T Consensus       293 --ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r  357 (531)
T COG3898         293 --EPHPDI-------ALLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR  357 (531)
T ss_pred             --CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence              235654       34444444445666777777665322      445577888899999999999999998888887


Q ss_pred             HHHhCCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004848          546 IYNDAPGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISK  587 (727)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  587 (727)
                      +.+..        .++..|+.+-... |+-.++..++-+++..
T Consensus       358 ~~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         358 EAPRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hCchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            76654        5677788887765 9999999999998874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.61  E-value=2e-07  Score=74.08  Aligned_cols=83  Identities=24%  Similarity=0.312  Sum_probs=67.6

Q ss_pred             cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (727)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (727)
                      .|+|+.|+.+|++++...+     ..+  ....++.+|.+|+..|+|++|+.++++ +..        ++......+.+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~-----~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a   65 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP-----TNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA   65 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC-----GTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCC-----CCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence            6899999999999998862     221  233577899999999999999999999 555        356678888889


Q ss_pred             HHHHHhcCHHHHHHHHHHH
Q 004848          358 EAHVQALQFSEAQKFCQMA  376 (727)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~a  376 (727)
                      .++..+|++++|+.+++++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.59  E-value=0.00046  Score=67.75  Aligned_cols=302  Identities=15%  Similarity=0.027  Sum_probs=209.9

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004848          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (727)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (727)
                      -|.+-.-.|+-..|.++-.++-.+......      ..++..-+..-...|+++.|..-|+-.+.      ++.....-+
T Consensus        90 tGliAagAGda~lARkmt~~~~~llssDqe------pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGL  157 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLSSDQE------PLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGL  157 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhhccch------HHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhH
Confidence            355566678999999998888766654433      24566678888889999999999987652      222222222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHh
Q 004848          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE  515 (727)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (727)
                      ..|-.--...|..+.|+.|.+.+...        -|....++...-...+..|+++.|+++.+.......-. .+.....
T Consensus       158 RgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie-~~~aeR~  228 (531)
T COG3898         158 RGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE-KDVAERS  228 (531)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc-hhhHHHH
Confidence            22223335689999999999999887        67777788777788889999999999998766542110 0111112


Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (727)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (727)
                      .+..+...+.... .-+...|...-.+++++.++.       +-.-..-+..++..|+..++-.+++.+.+.     +. 
T Consensus       229 rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl-------vPaav~AAralf~d~~~rKg~~ilE~aWK~-----eP-  294 (531)
T COG3898         229 RAVLLTAKAMSLL-DADPASARDDALEANKLAPDL-------VPAAVVAARALFRDGNLRKGSKILETAWKA-----EP-  294 (531)
T ss_pred             HHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc-------chHHHHHHHHHHhccchhhhhhHHHHHHhc-----CC-
Confidence            2223333333332 235778888888888876655       234445688999999999999999988764     22 


Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      ++.       ++.+|....--+.++.-++++..+..-     .|+........+..-...|++..|..--+.+..+    
T Consensus       295 HP~-------ia~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~----  358 (531)
T COG3898         295 HPD-------IALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE----  358 (531)
T ss_pred             ChH-------HHHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh----
Confidence            232       344455444445666667776655222     6788888999999999999999999988888865    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHH
Q 004848          676 LGTANPDVDDEKRRLAELLKEA-GRVRSRKAQSLETLLDA  714 (727)
Q Consensus       676 ~g~~~p~~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~  714 (727)
                          .|. ..++..|+.+-... |+-.+.. ..+-+++..
T Consensus       359 ----~pr-es~~lLlAdIeeAetGDqg~vR-~wlAqav~A  392 (531)
T COG3898         359 ----APR-ESAYLLLADIEEAETGDQGKVR-QWLAQAVKA  392 (531)
T ss_pred             ----Cch-hhHHHHHHHHHhhccCchHHHH-HHHHHHhcC
Confidence                343 56777888888776 9999999 999999875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.52  E-value=1.1e-06  Score=82.99  Aligned_cols=104  Identities=21%  Similarity=0.178  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (727)
                      +++.|.-++..|+|..|...|..-++.     .|+.+....++++||.+++.+|++++|...|..+++-+     +.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            677888889999999999999999887     44567788899999999999999999999999999865     78899


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+++++.||.++.++|+.++|. ..|+++++..|.
T Consensus       214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~  247 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPG  247 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCC
Confidence            9999999999999999999999 999999999997

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.52  E-value=4.7e-06  Score=69.98  Aligned_cols=99  Identities=22%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      .+++.+|.++-..|+.++|+.+|++++..     +........++..+|..+...|++++|+..+++++..        +
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~   68 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------F   68 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence            35788999999999999999999999884     2233445679999999999999999999999999876        4


Q ss_pred             cc---HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          639 PD---TLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       639 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      |+   ...+...++.++...|++++|+..+-.++.
T Consensus        69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            54   666778899999999999999999988774

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.52  E-value=2.5e-06  Score=83.07  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=87.5

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          559 GIEAQMGVMY-YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       559 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      ...+..+..+ ...|+|++|+..|+..+..++.     ......+++.+|.+|+..|++++|+..|++++..     .|+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCC
Confidence            3445556654 5679999999999999987543     3345678999999999999999999999999987     344


Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      ++....+++.+|.++..+|++++|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            77788999999999999999999999999999764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.50  E-value=2.3e-06  Score=71.81  Aligned_cols=102  Identities=25%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                      .+++.+|.++-..|+.++|+.+|++++..     +...+....++..+|..+..+|++++|+..+++++.-+     +++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            36788999999999999999999999885     44455667799999999999999999999999998642     222


Q ss_pred             hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                      +........++.++...|+.++|+ ..+-.++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl-~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEAL-EWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence            336777788899999999999999 77666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.50  E-value=7.2e-07  Score=72.74  Aligned_cols=97  Identities=30%  Similarity=0.423  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      +++.+|.++...|++++|+..+++++..        .|....++..+|.++...+++++|+.++++++.....       
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-------   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence            4678899999999999999999999887        4555688999999999999999999999999987322       


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                        ...++..+|.++...|++++|..++.+++...
T Consensus        67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence              23678899999999999999999999887654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.47  E-value=9.6e-07  Score=66.14  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.+|..+...|++++|+..|++++..        +|....+++.+|.++..+|++++|+ ..|+++++.+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence            46899999999999999999999954        7999999999999999999999999 999999999986

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=4.3e-05  Score=68.61  Aligned_cols=230  Identities=16%  Similarity=0.084  Sum_probs=144.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      +...+..++..|..|-..|-+.-|.-.|.+++.+        .|..+.+++.||..+...|+|+.|.+.|...+++    
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence            4556677888899999999999999999999999        8999999999999999999999999999999998    


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 004848          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN-AIS  586 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~  586 (727)
                           +|..-.+..+.|..+.--|++.-|.+-+.+-.+.   .+.++...  .|..+   -...-++.+|...+.+ +..
T Consensus       129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~--LWLYl---~E~k~dP~~A~tnL~qR~~~  195 (297)
T COG4785         129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRS--LWLYL---NEQKLDPKQAKTNLKQRAEK  195 (297)
T ss_pred             -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHH--HHHHH---HHhhCCHHHHHHHHHHHHHh
Confidence                 5556677888899999999999998777655443   32332211  22111   1223466677655433 222


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                      ..       ...  +-++. ..  .-.|+..+ ..+++++....+.... -.....++++.||..|...|+.++|..+|+
T Consensus       196 ~d-------~e~--WG~~i-V~--~yLgkiS~-e~l~~~~~a~a~~n~~-~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK  261 (297)
T COG4785         196 SD-------KEQ--WGWNI-VE--FYLGKISE-ETLMERLKADATDNTS-LAEHLTETYFYLGKYYLSLGDLDEATALFK  261 (297)
T ss_pred             cc-------Hhh--hhHHH-HH--HHHhhccH-HHHHHHHHhhccchHH-HHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            11       111  11111 11  11222211 1223333322111000 011234589999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCCh
Q 004848          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV  700 (727)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~  700 (727)
                      -++.-.-  .  +.-+..-+.+.|+.+...+.+.
T Consensus       262 LaiannV--y--nfVE~RyA~~EL~~l~q~~~~l  291 (297)
T COG4785         262 LAVANNV--Y--NFVEHRYALLELSLLGQDQDDL  291 (297)
T ss_pred             HHHHHhH--H--HHHHHHHHHHHHHHhccccchh
Confidence            8886321  0  0112233445555555544333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.45  E-value=7.4e-07  Score=66.79  Aligned_cols=59  Identities=25%  Similarity=0.320  Sum_probs=55.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      .+|..++..|++++|+..|+++++.        +|....+++.+|.++..+|++++|+.+|++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999998        8999999999999999999999999999999987

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=0.00019  Score=67.22  Aligned_cols=301  Identities=13%  Similarity=0.066  Sum_probs=186.4

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004848          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (727)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (727)
                      ..+|.-....+++++|+..|.+.+...-...+....+.-.+...++.+|...|++..-.+........+.... .+....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~K   85 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITK   85 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHH
Confidence            3456667788899999999999887632222222223345678899999999998877666655544443332 233333


Q ss_pred             HHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          434 VDCSIGD-TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       434 ~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      +...+-. +-.....++.-+..+...++.+.+...  .-.....-..+..++++.|+|.+|+......+.-+++.   ++
T Consensus        86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~---DD  160 (421)
T COG5159          86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY---DD  160 (421)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---cC
Confidence            3333322 223455677788888887776544320  11122344567889999999999999999988887773   44


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      .+....++..-..+|....+..++...+..|.......+-++...+.+-..-|.+++...+|..|..+|-++++-+....
T Consensus       161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~  240 (421)
T COG5159         161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK  240 (421)
T ss_pred             ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence            56667778888899999999999988888887776655444444555555557778888999999999999988654433


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFE--EARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFV  668 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a  668 (727)
                      ....  ....+..+-..-...+..++-...+.  .+++.+       ......++...+..+..  +.+|..|+..|..-
T Consensus       241 ~d~k--Ac~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e  311 (421)
T COG5159         241 MDVK--ACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE  311 (421)
T ss_pred             chHH--HHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence            2211  11222222222223333333333222  122211       22344566666666643  44677777777655


Q ss_pred             H
Q 004848          669 V  669 (727)
Q Consensus       669 l  669 (727)
                      +
T Consensus       312 l  312 (421)
T COG5159         312 L  312 (421)
T ss_pred             h
Confidence            4

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.41  E-value=0.00028  Score=68.67  Aligned_cols=229  Identities=28%  Similarity=0.376  Sum_probs=164.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848          445 LSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (727)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (727)
                      .+.+..+...+...+..        .+.  ........+..+...+.+..+...+...+..  .     ..+.....+..
T Consensus        36 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~  100 (291)
T COG0457          36 LGELAEALELLEEALEL--------LPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--E-----LLPNLAEALLN  100 (291)
T ss_pred             HhhHHHHHHHHHHHHhc--------CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--h-----hccchHHHHHH
Confidence            45555566666655554        222  3567778888888889999998888888764  0     03344667788


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV-MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (727)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (727)
                      ++..+...+++..++..+..++......       .......+. ++...|+++.|...|.+++...    .. ......
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~  168 (291)
T COG0457         101 LGLLLEALGKYEEALELLEKALALDPDP-------DLAEALLALGALYELGDYEEALELYEKALELD----PE-LNELAE  168 (291)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHcCCCCc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-ccchHH
Confidence            8888888888888888888887754433       112223344 7888999999999999885421    10 012345


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                      .+...+..+...++++.|+..+.+++..        .+. ....+..++.++...+++..|...+..++...        
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------  232 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------  232 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhh--------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------
Confidence            5666666678888999999999999888        555 56788889999999999999999999988763        


Q ss_pred             hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      |.....+..++..+...|.++++. ..+.+++..+|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  268 (291)
T COG0457         233 PDNAEALYNLALLLLELGRYEEAL-EALEKALELDPD  268 (291)
T ss_pred             cccHHHHhhHHHHHHHcCCHHHHH-HHHHHHHHhCcc
Confidence            444556677777777777788888 888888887763

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=0.00026  Score=68.16  Aligned_cols=301  Identities=16%  Similarity=0.114  Sum_probs=194.7

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848          354 RYLAEAHVQALQFSEAQKFCQMALDIHKD--NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (727)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (727)
                      ...+.......++++++..+.+.+.....  ..+......-.....+|.++...|++.+-..........+...+. +..
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-aka   86 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKA   86 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHH
Confidence            33444455556678888888877764211  111111122345778999999999998887777665444433322 222


Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848          432 ASVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (727)
Q Consensus       432 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (727)
                      +.+...+-..+ ..-+..+.-+..+..+++...+...  .-.....-..+..+|...++|.+|+......+.-.++.   
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl---  161 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL---  161 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---
Confidence            33333333333 3345566777788888776554320  11122344578899999999999999999998888774   


Q ss_pred             CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004848          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (727)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (727)
                      ++......++..-..+|....+..+|...+..|.......+-.+...+.+-..-|.++....+|..|..||-+|.+-+..
T Consensus       162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s  241 (411)
T KOG1463|consen  162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS  241 (411)
T ss_pred             ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence            34555677777788899999999999999888877766554444455555556688888889999999999999987766


Q ss_pred             hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 004848          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEE--ARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILE  666 (727)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~  666 (727)
                      .++..  ....++-.|-.+-...+..++--.++.-  +++.        ......++...|.++..  +.+|+.|+.-|+
T Consensus       242 ~~~~v--~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk  311 (411)
T KOG1463|consen  242 LDDDV--KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYK  311 (411)
T ss_pred             cCCcH--HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence            65542  2334555555666667777765554433  3332        33345677888887754  346777777777


Q ss_pred             HHHH
Q 004848          667 FVVG  670 (727)
Q Consensus       667 ~al~  670 (727)
                      .-+.
T Consensus       312 ~eL~  315 (411)
T KOG1463|consen  312 KELA  315 (411)
T ss_pred             HHHh
Confidence            6553

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.39  E-value=0.0009  Score=65.01  Aligned_cols=229  Identities=26%  Similarity=0.300  Sum_probs=166.6

Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (727)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (727)
                      .+.+..+...+...+...+..      .........+..+...+++..+...+......    ...+.....+..++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  105 (291)
T COG0457          36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL  105 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence            345566666666665554332      01245777888889999999999888877643    23556667788888889


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (727)
                      ...+++..++..+..++..        .+.........+. ++...|+++.|...+.+++.....      .......+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~  171 (291)
T COG0457         106 EALGKYEEALELLEKALAL--------DPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------LNELAEALL  171 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcC--------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ccchHHHHH
Confidence            8999999999988888875        2222333344444 899999999999999999663110      013455566


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (727)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (727)
                      ..+..+...++++.|+..+.+++...+..      ....+..++..+...+++..|...+..++.....        ...
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~  237 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAE  237 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHH
Confidence            66666888899999999999999887652      2456788899999999999999999999886332        235


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      .+..++..+...+.++++...+.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         238 ALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5666777777777899999999999887

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=4.9e-05  Score=68.28  Aligned_cols=204  Identities=18%  Similarity=0.119  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (727)
                      .+.+..++..|..|-..|-+.-|.-.|.+++.+.     |.-|    .+++.||..+...|+|+.|.+.|...+++    
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-----P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----  128 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-----PDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLEL----  128 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-----CCcH----HHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence            4456778888999999999999999999999996     3333    35889999999999999999999999999    


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004848          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-CETKGDHEAALEHLVLASM  420 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~-~~~~g~~~~A~~~~~~al~  420 (727)
                          +|..-.+..+.|..++.-|++.-|.+-+.+-.+..++..          +..+-.. -...-+..+|...+.+-.+
T Consensus       129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP----------fR~LWLYl~E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP----------FRSLWLYLNEQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh----------HHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence                899999999999999999999999988877666554432          2222111 2233466677655432211


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (727)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (727)
                        ...........+-+       .+|+..+ ...++++....+... .-......+++.||..+...|+.++|..+|+-+
T Consensus       195 --~~d~e~WG~~iV~~-------yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa  263 (297)
T COG4785         195 --KSDKEQWGWNIVEF-------YLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEATALFKLA  263 (297)
T ss_pred             --hccHhhhhHHHHHH-------HHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence              11111111111112       2233221 112222222211000 002335678999999999999999999999988


Q ss_pred             HHH
Q 004848          501 LRI  503 (727)
Q Consensus       501 l~~  503 (727)
                      +..
T Consensus       264 ian  266 (297)
T COG4785         264 VAN  266 (297)
T ss_pred             HHH
Confidence            765

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=0.0055  Score=67.45  Aligned_cols=155  Identities=20%  Similarity=0.177  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-------
Q 004848          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA--FKTN-------  465 (727)
Q Consensus       395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~-------  465 (727)
                      ....|.-++..|.|+.|.-.|...              .-|..++..+..+|+|..|....++|-..  ++..       
T Consensus      1197 i~~vGdrcf~~~~y~aAkl~y~~v--------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV--------------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence            344566666666776666655422              34556777777888888888777766322  2211       


Q ss_pred             --------cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848          466 --------KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (727)
Q Consensus       466 --------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (727)
                              .|-+-.-.+.-+-.+...|...|-|++-+.+++.++-+-+.         ....+..||.+|.+- ++++-.
T Consensus      1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred             hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHH
Confidence                    11111122334556777888899999999999998877433         244567778777653 344444


Q ss_pred             HHHHHHHHHHHhCCCCC-----ccHHHHHHHHHHHHHHcCCHHHH
Q 004848          538 KLLQKALKIYNDAPGQQ-----STVAGIEAQMGVMYYMLGNYSDS  577 (727)
Q Consensus       538 ~~~~~al~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A  577 (727)
                      ++++--.    .....+     ...+..|..+..+|.+-..|+.|
T Consensus      1333 EHl~LFw----sRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1333 EHLKLFW----SRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             HHHHHHH----HhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            4433211    111111     01234566677777766666655

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.36  E-value=0.0051  Score=63.34  Aligned_cols=146  Identities=10%  Similarity=-0.010  Sum_probs=93.9

Q ss_pred             cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004848          211 SEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQ  290 (727)
Q Consensus       211 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  290 (727)
                      .+...++|.+...|..+.+.+-.+ - ++++.+.|++-+..+         |....+|.......+...+|+....+|.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~R   78 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSR   78 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            445678999999999999877666 5 999999999988765         44466677777888889999999999999


Q ss_pred             hcccchhccCccchHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH--------
Q 004848          291 SIEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV--------  361 (727)
Q Consensus       291 al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--------  361 (727)
                      ++.-.          ..+..| ..|-.+....|+...+....-+|.+......+ -++.....|...+..+.        
T Consensus        79 CLvkv----------LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~  147 (656)
T KOG1914|consen   79 CLVKV----------LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKY  147 (656)
T ss_pred             HHHHH----------hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccH
Confidence            98652          111122 22444445566666666666666666544333 12333344444333322        


Q ss_pred             -HhcCHHHHHHHHHHHHH
Q 004848          362 -QALQFSEAQKFCQMALD  378 (727)
Q Consensus       362 -~~g~~~~A~~~~~~al~  378 (727)
                       ...+.+.-.+.|++|+.
T Consensus       148 ee~QRI~~vRriYqral~  165 (656)
T KOG1914|consen  148 EENQRITAVRRIYQRALV  165 (656)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence             22245555666666654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.35  E-value=9.5e-06  Score=87.22  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=96.8

Q ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHH
Q 004848          563 QMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI--------NEAVELFEEARSILE  631 (727)
Q Consensus       563 ~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~  631 (727)
                      ..|.-|...+   ++..|+.+|++|+++        .+.++.++..++.++.....+        ..+....++++.+  
T Consensus       344 lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al--  413 (517)
T PRK10153        344 YQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL--  413 (517)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc--
Confidence            3444444443   477899999999997        344667777777776554322        2333333333322  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (727)
                          +..+....++..+|..+...|++++|...+++|+.+        +|. ..+|..+|.++...|+.++|. +.|++|
T Consensus       414 ----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~-~~~~~A  479 (517)
T PRK10153        414 ----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAA-DAYSTA  479 (517)
T ss_pred             ----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence                113444568888999999999999999999999987        464 689999999999999999999 999999


Q ss_pred             HHHhhh
Q 004848          712 LDANSR  717 (727)
Q Consensus       712 l~~~p~  717 (727)
                      +.++|.
T Consensus       480 ~~L~P~  485 (517)
T PRK10153        480 FNLRPG  485 (517)
T ss_pred             HhcCCC
Confidence            999997

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=1.1e-05  Score=71.37  Aligned_cols=119  Identities=23%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      ..+..+-.-|+-++..|+ |++|..-|..||.+++..    +......+|.+.|.++++++.++.|+..+.+++++.   
T Consensus        93 ~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---  164 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGD-YEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---  164 (271)
T ss_pred             HHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence            345677888999999998 999999999999998655    224556788999999999999999999999999996   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA  359 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  359 (727)
                        +    ....++.+.|.+|.++..|++|+.-|.+.++.        +|..-.+...++.+
T Consensus       165 --p----ty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  165 --P----TYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL  211 (271)
T ss_pred             --c----hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence              2    23445778999999999999999999999998        67665555544443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.32  E-value=0.0031  Score=67.56  Aligned_cols=187  Identities=19%  Similarity=0.125  Sum_probs=131.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH---HHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848          483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA---SGLTDVSSIYE----SMNELEQAIKLLQKALKIYNDAPGQQS  555 (727)
Q Consensus       483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (727)
                      +.--.|+-+.++..+.++.+. ..    ...+...   ..|+.....+.    .....+.|.+++......+|+.     
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~-~~----i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-----  266 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKS-EN----IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-----  266 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhcc-CC----cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-----
Confidence            333468999999999988662 11    1122111   11111111122    2345677888888888877765     


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                        +..+...|.++...|+.++|+..|++++......    ......+++.+|.++..+.+|++|..+|.+..+.      
T Consensus       267 --~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------  334 (468)
T PF10300_consen  267 --ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------  334 (468)
T ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------
Confidence              4567788999999999999999999988533322    2234578999999999999999999999998875      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGRL-------DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (727)
                       +....+...+..|.|+...|+.       ++|.+++.++-.+..+..|...|-..-+......
T Consensus       335 -s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~  397 (468)
T PF10300_consen  335 -SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQK  397 (468)
T ss_pred             -cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHH
Confidence             1223444567788899999999       9999999999998888777666655544444433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=1.4e-05  Score=70.73  Aligned_cols=125  Identities=13%  Similarity=0.226  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (727)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (727)
                      +-.-|.-++..|+|++|..-|..|+.+++....   .....+|.+.|.++++++.++.|+....+|+++        +|.
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt  166 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT  166 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence            344578889999999999999999998765443   335678999999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                      +..++...|.+|..+.++++|++-|++.+++        +|....+...++++--......+++
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernEkm  222 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNEKM  222 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999999999999999986        6777777766666654444444433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.30  E-value=6.2e-06  Score=71.87  Aligned_cols=99  Identities=9%  Similarity=-0.017  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .....+..|.-++..|++++|..+|+-....        ++.....+..||.|+..+++|++|+..|..+..+       
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-------  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-------  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            4456777888899999999999999988877        6777778999999999999999999999999876       


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                       .++++...+..|.+|..+|+.+.|. .+|+.+++.
T Consensus       101 -~~~dp~p~f~agqC~l~l~~~~~A~-~~f~~a~~~  134 (165)
T PRK15331        101 -LKNDYRPVFFTGQCQLLMRKAAKAR-QCFELVNER  134 (165)
T ss_pred             -ccCCCCccchHHHHHHHhCCHHHHH-HHHHHHHhC
Confidence             3455556889999999999999999 999999873

>PRK11906 transcriptional regulator; Provisional

Probab=98.30  E-value=4e-05  Score=78.08  Aligned_cols=159  Identities=16%  Similarity=0.146  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhCC---HHHHHHHHHHHH---HHHHHHhCCCCchHHHHHHHHHHHHHHh---------cCHHHHHHHHHH
Q 004848          311 HMQLGDTYAMLGQ---LENSLMCYTTGL---EVQKQVLGETDPRVGETCRYLAEAHVQA---------LQFSEAQKFCQM  375 (727)
Q Consensus       311 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~  375 (727)
                      ++..|......+.   .+.|+.+|.+|+   .+        +|..+.+|..++.|++..         .+..+|.++.++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            4566666655543   467888999999   55        899999999999998865         235677888888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY  455 (727)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (727)
                      |+++.+.+        +.++..+|.+....++++.|...|++|+.      ..|..+.+++..|.+....|+.++|+..+
T Consensus       330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAKI------HSTDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHhh------cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88887655        37799999999999999999999999975      47888999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 004848          456 QKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCEN  499 (727)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~  499 (727)
                      ++++++        +|....+-...-.+ .+-....++|+.+|-+
T Consensus       396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            999998        66654443333333 3445567778777654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.30  E-value=1.4e-05  Score=69.74  Aligned_cols=103  Identities=11%  Similarity=0.064  Sum_probs=85.8

Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (727)
                      +.........+..|.-++..|++++|..+|+-..-.        .+.....+..||.++..+++|++|+..|..|..+  
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--  100 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--  100 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence            444445566788899999999999999999876653        2233567899999999999999999999999987  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                            .++.....+..|.||..+|+...|+..|+.++.
T Consensus       101 ------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        101 ------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                  444445679999999999999999999999986

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.29  E-value=2.4e-05  Score=64.04  Aligned_cols=103  Identities=18%  Similarity=0.258  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      .+..-|......|+.+.|++.|.+++.+        -|..+.+|.+.+..+.-+|+.++|++-+.+++++.    |+...
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr  112 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR  112 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence            4455677888999999999999999999        78899999999999999999999999999999874    44445


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ....++...|.+|..+|+.+.|. ..|+.+-++-..
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR-~DFe~AA~LGS~  147 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAAR-ADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHH-HhHHHHHHhCCH
Confidence            55678889999999999999999 999988766443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.29  E-value=2.6e-05  Score=63.90  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      .+-.-|......|+.+.|++.|.+++.+        -|..+.+|.+.+..+..+|+.++|+.-+++++++.     +...
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~t  111 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQT  111 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Cccc
Confidence            3445677888999999999999999999        68899999999999999999999999999999995     4445


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      .....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            6678899999999999999999999999988763

>PRK11906 transcriptional regulator; Provisional

Probab=98.28  E-value=1.2e-05  Score=81.73  Aligned_cols=136  Identities=10%  Similarity=0.004  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHH
Q 004848          560 IEAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---------YSINEAVELFEEAR  627 (727)
Q Consensus       560 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al  627 (727)
                      .++..|......+.   .+.|..+|.+++...     ...+.++.+|..++.+++..         .+..+|.++.++|+
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            33556666655553   456777888887321     11345678888888887754         24567888888999


Q ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHH
Q 004848          628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQS  707 (727)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~  707 (727)
                      ++        ++..+.++..+|.++...++++.|...|++|+.+        +|+.+.+++..|.+....|+.++|. +.
T Consensus       332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~-~~  394 (458)
T PRK11906        332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR-IC  394 (458)
T ss_pred             hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH-HH
Confidence            88        8888999999999999999999999999999987        7999999999999999999999999 99


Q ss_pred             HHHHHHHhhh
Q 004848          708 LETLLDANSR  717 (727)
Q Consensus       708 l~~al~~~p~  717 (727)
                      ++++++++|.
T Consensus       395 i~~alrLsP~  404 (458)
T PRK11906        395 IDKSLQLEPR  404 (458)
T ss_pred             HHHHhccCch
Confidence            9999999997

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.28  E-value=1.5e-05  Score=81.82  Aligned_cols=118  Identities=15%  Similarity=0.137  Sum_probs=101.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 004848          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (727)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (727)
                      +-.++...++++.|+.+|++..+.       .+    .+...++.++...++..+|+.++.+++..        .|....
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~-------~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~  235 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER-------DP----EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE  235 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc-------CC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence            445556678899999888886653       22    34556899999999999999999999977        788888


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE  709 (727)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  709 (727)
                      .+...|..+...++++.|+...++++.+        .|....+|+.|+.+|...|+++.|+ ..+.
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~AL-laLN  292 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENAL-LALN  292 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHH-HHHh
Confidence            9999999999999999999999999987        6999999999999999999999999 5444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.8e-05  Score=75.84  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHH
Q 004848          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREE  674 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~  674 (727)
                      ..+.-|..||.+|+.+|++..|...|.+|+++        .|+...++..+|.++..+.   ...+|...+++++..   
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---  222 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---  222 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---
Confidence            34678999999999999999999999999999        8888889999999887654   467899999999976   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          675 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       675 ~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                           +|.+..+++.||..++..|++.+|. ..++..++..|.
T Consensus       223 -----D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~  259 (287)
T COG4235         223 -----DPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPA  259 (287)
T ss_pred             -----CCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCC
Confidence                 7899999999999999999999999 999999999886

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.25  E-value=0.014  Score=64.01  Aligned_cols=230  Identities=17%  Similarity=0.086  Sum_probs=139.3

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHH
Q 004848          232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH  311 (727)
Q Consensus       232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  311 (727)
                      ...++ +.+|+....+.++-       .|+  ..-+...-|..+.++|++++|..+++..-...     ..+.    .++
T Consensus        20 ld~~q-fkkal~~~~kllkk-------~Pn--~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D~----~tL   80 (932)
T KOG2053|consen   20 LDSSQ-FKKALAKLGKLLKK-------HPN--ALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTDD----LTL   80 (932)
T ss_pred             hhhHH-HHHHHHHHHHHHHH-------CCC--cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCch----HHH
Confidence            34444 66666666655553       333  34445556888999999999997776544332     2222    247


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004848          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (727)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (727)
                      ..+-.+|..++++++|..+|++++..        .|. -+.++.+-.+|.+.+.|.+-.+..-+..+..|+...      
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y------  145 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY------  145 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc------
Confidence            77889999999999999999999988        677 677888888888888887655544333333333321      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          392 AADRRLMGLICETKGDHEAALE-----HLVLASMT-MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (727)
Q Consensus       392 a~~~~~l~~~~~~~g~~~~A~~-----~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (727)
                       ..|..+..+.......+.+..     +-++.... +...+.-...+.+. ..-.++..+|++++|.+.+..-+.  ...
T Consensus       146 -yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l  221 (932)
T KOG2053|consen  146 -YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL  221 (932)
T ss_pred             -hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc
Confidence             235555555555554444443     11222211 11122212222222 223466778999999998843322  221


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                          .+............+...+++.+-.++..+++..
T Consensus       222 ----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  222 ----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             ----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence                2333334445566777788888887777777766

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.25  E-value=0.00023  Score=66.22  Aligned_cols=242  Identities=14%  Similarity=0.133  Sum_probs=166.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004848          321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL  400 (727)
Q Consensus       321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~  400 (727)
                      ....++|+.-|++++++-    |+....-..++-.+..+++.+++|++-...|.+.+............+  .+.+.+-.
T Consensus        40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD  113 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD  113 (440)
T ss_pred             ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence            347899999999999983    222333456788888999999999999999999988765443222111  12222322


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHH
Q 004848          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP----AVASV  476 (727)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~  476 (727)
                      .-....+.+--.++|+-.+..++...+.......-..+|.+|+..|+|.+-...+.+.-..++...|.++.    ....+
T Consensus       114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi  193 (440)
T KOG1464|consen  114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI  193 (440)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence            22344455555666776676666666666666667789999999999999888888877777666555432    34455


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT-DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (727)
                      |..-..+|..+.+-..-..+|++++.+-..+    ++|.+.-+.. .=|..+.+.|+|++|-.-|-+|.+-+........
T Consensus       194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR  269 (440)
T KOG1464|consen  194 YALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR  269 (440)
T ss_pred             HhhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence            6566778888888888888999999885442    3554433332 3356788899999999999888888776633333


Q ss_pred             cHHHHHHHHHHHHHHcC
Q 004848          556 TVAGIEAQMGVMYYMLG  572 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g  572 (727)
                      ....-|..+|..+.+.|
T Consensus       270 ttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  270 TTCLKYLVLANMLMKSG  286 (440)
T ss_pred             hHHHHHHHHHHHHHHcC
Confidence            44445667788877765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.25  E-value=8.3e-05  Score=65.19  Aligned_cols=150  Identities=19%  Similarity=0.213  Sum_probs=111.2

Q ss_pred             hcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004848          529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL  608 (727)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  608 (727)
                      +.=+.+.+..-..+.+++.+..        .-.+.||..+...|++.+|...|++++.-.   .    ......+..++.
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr~~EA~~hy~qalsG~---f----A~d~a~lLglA~  132 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTV--------QNRYRLANALAELGRYHEAVPHYQQALSGI---F----AHDAAMLLGLAQ  132 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c----CCCHHHHHHHHH
Confidence            3334444444444455544433        345689999999999999999999998631   1    112467888999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848          609 ACVQRYSINEAVELFEEARSILEQECGPYHPD--TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE  686 (727)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~  686 (727)
                      ..+..+++..|...+++..+.        +|.  .......+|.+|..+|++.+|...|+.++..+        |. ..+
T Consensus       133 Aqfa~~~~A~a~~tLe~l~e~--------~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~a  195 (251)
T COG4700         133 AQFAIQEFAAAQQTLEDLMEY--------NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQA  195 (251)
T ss_pred             HHHhhccHHHHHHHHHHHhhc--------CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHH
Confidence            999999999999999988776        222  23366888999999999999999999999763        33 456


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHH
Q 004848          687 KRRLAELLKEAGRVRSRKAQSLETL  711 (727)
Q Consensus       687 ~~~La~~~~~~g~~~~A~~~~l~~a  711 (727)
                      ....+..+.++|+.++|. ..+..+
T Consensus       196 r~~Y~e~La~qgr~~ea~-aq~~~v  219 (251)
T COG4700         196 RIYYAEMLAKQGRLREAN-AQYVAV  219 (251)
T ss_pred             HHHHHHHHHHhcchhHHH-HHHHHH
Confidence            667799999999999888 554443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.24  E-value=0.0004  Score=65.24  Aligned_cols=186  Identities=17%  Similarity=0.160  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (727)
                      -+..++.-|......|+|++|+..|+.+...     -+..|....+...++..+++.+++++|+..+++-+.++..    
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~----  103 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT----  103 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC----
Confidence            3567788889999999999999999987754     1235566789999999999999999999999999999544    


Q ss_pred             CChHhHHHHHHHHHHHHHhc-----ccH---HHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          511 VPPEEIASGLTDVSSIYESM-----NEL---EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (727)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (727)
                        ++....+++..|.++...     .+.   .+|+..|+..+..+|..   .. ...+.              .=+..+.
T Consensus       104 --~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS---~Y-a~dA~--------------~~i~~~~  163 (254)
T COG4105         104 --HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS---RY-APDAK--------------ARIVKLN  163 (254)
T ss_pred             --CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC---cc-hhhHH--------------HHHHHHH
Confidence              566777788888776543     222   34455555555554433   11 00110              0011111


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004848          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (727)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (727)
                      ..              .+.--..+|..|.+.|.+..|+..++.+++.+..     .+....++..+..+|..+|-.++|.
T Consensus       164 d~--------------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~  224 (254)
T COG4105         164 DA--------------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAK  224 (254)
T ss_pred             HH--------------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHH
Confidence            11              1223345688899999999999999988887433     4556678888889999999888886


Q ss_pred             HH
Q 004848          663 EI  664 (727)
Q Consensus       663 ~~  664 (727)
                      ..
T Consensus       225 ~~  226 (254)
T COG4105         225 KT  226 (254)
T ss_pred             HH
Confidence            54

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.24  E-value=0.00019  Score=67.42  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (727)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (727)
                      .|+.-|......|+|++|+..|+.+.....     ..|....+...++.++++.+++++|+...++-+.++|...+.   
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-----~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~---  107 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHP-----FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA---  107 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---
Confidence            488899999999999999999999886632     246677899999999999999999999999999999877543   


Q ss_pred             HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCChh--------------HHHHHHHHHHHHHHcCCHHH
Q 004848          390 EEAADRRLMGLICETK-----GDHEAALEHLVLASMTMIANDQDAE--------------VASVDCSIGDTYLSLSRYDE  450 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~  450 (727)
                        ..+++..|.+++..     .|...+...+...-.++...++.+-              .+.--..+|..|.+.|.+..
T Consensus       108 --dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         108 --DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             --hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence              34577777776543     3444444444444344444443322              22233567899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004848          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY  496 (727)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  496 (727)
                      |+..++.+++.+..     .+....++..+..+|..+|-.++|...
T Consensus       186 A~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         186 AINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            99999999987543     456678889999999999999998654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.24  E-value=3e-05  Score=83.38  Aligned_cols=131  Identities=14%  Similarity=0.054  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHH
Q 004848          310 GHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ--------FSEAQKFCQMALD  378 (727)
Q Consensus       310 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~  378 (727)
                      -++..|..|...+.   +..|+.+|++|+++        +|+.+.++..++.+|.....        ...+.....+++.
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            35666777766554   78999999999999        89999999998888765432        2333444444333


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      +....   ..   ..++..+|..+...|++++|...+++|+.+      .+. +.+|..+|.++...|++++|++.|++|
T Consensus       413 l~~~~---~~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        413 LPELN---VL---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             cccCc---CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            31111   11   256888899999999999999999999864      243 578999999999999999999999999


Q ss_pred             HHH
Q 004848          459 LTA  461 (727)
Q Consensus       459 l~~  461 (727)
                      +.+
T Consensus       480 ~~L  482 (517)
T PRK10153        480 FNL  482 (517)
T ss_pred             Hhc
Confidence            998

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.23  E-value=2.8e-05  Score=66.29  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      ...++.-|...++.|+|++|++.|+.....     -|..+....+...|+.+|...|++++|+..+++.+++.     |.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence            467888899999999999999999987766     22245556789999999999999999999999999875     88


Q ss_pred             ChhHHHHHHHHHHHHHHhCC---------------hhHHHHHHHHHHHHHhhh
Q 004848          680 NPDVDDEKRRLAELLKEAGR---------------VRSRKAQSLETLLDANSR  717 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~---------------~~~A~~~~l~~al~~~p~  717 (727)
                      ||...-+++..|.++..+..               ...|. ..|+.++...|+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~  131 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPN  131 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcC
Confidence            99999999999999999887               88999 999999999997

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.23  E-value=0.00023  Score=62.45  Aligned_cols=162  Identities=14%  Similarity=0.075  Sum_probs=121.7

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (727)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (727)
                      ...+.-+.+....-..+.+++.|..         .-.+.||......|++.+|..+|++++.     +.-......+..+
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLgl  130 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGL  130 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHH
Confidence            3334445566666666666666554         3477899999999999999999999873     3444556778899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      +...+..+++..|...+++..+.-.      ....+.....+|..|...|++.+|...|+.++..+..          ..
T Consensus       131 A~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~  194 (251)
T COG4700         131 AQAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQ  194 (251)
T ss_pred             HHHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HH
Confidence            9999999999999999998887611      1123456677899999999999999999999998532          33


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      .....+..+..+|+.++|..-+....+...+.
T Consensus       195 ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~  226 (251)
T COG4700         195 ARIYYAEMLAKQGRLREANAQYVAVVDTAKRS  226 (251)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence            45567888899999999888777766655443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.23  E-value=3.3e-07  Score=87.33  Aligned_cols=230  Identities=13%  Similarity=0.080  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (727)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (727)
                      +-..|.-|+.+|.|++|+.+|.+++..        .|.++..+.+.|..|+++.+|..|...++.|+.+         +.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~  162 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DK  162 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hH
Confidence            345788999999999999999999998        7888899999999999999999999999999999         55


Q ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004848          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (727)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (727)
                      .+..+|...+.....+|...+|.+-++.++++.+...           .|-..+.......++.-.       .+...+.
T Consensus       163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~-----------ELkK~~a~i~Sl~E~~I~-------~KsT~G~  224 (536)
T KOG4648|consen  163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI-----------ELKKSLARINSLRERKIA-------TKSTPGF  224 (536)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH-----------HHHHHHHHhcchHhhhHH-------hhcCCCC
Confidence            6788999999999999999999999999999876541           122222222222211100       0111000


Q ss_pred             ----CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          595 ----KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       595 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                          .........-.-|..+...|.++.++.++-.-+..        ..+......+ +..|.+.-+++.|+.-.-+++.
T Consensus       225 ~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~--------~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~  295 (536)
T KOG4648|consen  225 TPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRAT--------IDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN  295 (536)
T ss_pred             CccccchhhhccccCcchhhhhhhccccceeEeeccccc--------cCccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence                00000111223355666777777777777655443        1111111122 5666777777777766655543


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .        +|........-+.+---.|...++. ..++.++.+.|-
T Consensus       296 ~--------~~s~~~~~s~~~~A~T~~~~~~E~K-~~~~T~~~~~P~  333 (536)
T KOG4648|consen  296 P--------KPTPMPDTSGPPKAETIAKTSKEVK-PTKQTAVKVAPA  333 (536)
T ss_pred             C--------CCCcCcccCCCchhHHHHhhhhhcC-cchhheeeeccc
Confidence            2        1111111122222223345556666 666666666654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.19  E-value=2.8e-05  Score=79.78  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=102.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004848          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (727)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (727)
                      |-.++...++++.|+.++++.....|.           +...++.++...++..+|+..+.+++.      ..|.....+
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL  237 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL  237 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence            344555678999999999997766532           356789999999999999999999984      344447888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (727)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (727)
                      ...+..+...++++.|+.+.++++.+        .|....+|..|+.+|...|+++.|+..++.+
T Consensus       238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            89999999999999999999999998        8999999999999999999999999777643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.19  E-value=2.3e-05  Score=74.17  Aligned_cols=102  Identities=19%  Similarity=0.235  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (727)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (727)
                      +++.|.-++..|+|..|...|..-++.++.     ....+.++++||.+++.+|+++.|...|..+++-     -|.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence            678888899999999999999998886432     4556789999999999999999999999999886     344788


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      ..++++.||.+...+|+.++|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            88999999999999999999999999999864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.18  E-value=5e-06  Score=62.94  Aligned_cols=67  Identities=31%  Similarity=0.401  Sum_probs=57.6

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (727)
Q Consensus       610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (727)
                      ++..|++++|+.+|++++..        +|+...+++.+|.+|...|++++|...+++++..        +|+....+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l   64 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQL   64 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHH
Confidence            35789999999999999999        8999999999999999999999999999999965        5666666666


Q ss_pred             HHH
Q 004848          690 LAE  692 (727)
Q Consensus       690 La~  692 (727)
                      ++.
T Consensus        65 ~a~   67 (68)
T PF14559_consen   65 LAQ   67 (68)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            554

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.00053  Score=63.69  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccH
Q 004848          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (727)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  641 (727)
                      +.+..++.-.|.|.-....+.+.++.       +++........||.+.++.|+.+.|..+|+..-+......+  -...
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~  251 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGK  251 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchh
Confidence            33444444455555555555444442       11122334444555555555555555555544433322222  1222


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+..+.+.+|.-.+++..|...|.+++..        +|.++.+..+-|.++.-.|+..+|+ +.++.++...|.
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAi-K~~e~~~~~~P~  318 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDAL-KQLEAMVQQDPR  318 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHH-HHHHHHhccCCc
Confidence            334444455555555555555555555432        3444444445555555555555555 555555555554

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.13  E-value=0.00034  Score=65.13  Aligned_cols=243  Identities=15%  Similarity=0.092  Sum_probs=161.0

Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (727)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (727)
                      ..+.++|+.-|++++++.+..++    +-..++..+..+++++|+|++-++.|.+.+..++..-.....-...+.+-..-
T Consensus        40 e~~p~~Al~sF~kVlelEgEKge----WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyi  115 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGE----WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYI  115 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccch----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            34789999999999998765543    22457888999999999999999999988765543222111112223333333


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh----HhHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP----EEIAS  518 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~  518 (727)
                      ....+.+--..+|+..++..+...  +......+...||.+|+..++|.+-.+.+.+....++..- |.++    .....
T Consensus       116 StS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed-GedD~kKGtQLLE  192 (440)
T KOG1464|consen  116 STSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED-GEDDQKKGTQLLE  192 (440)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc-Cchhhhccchhhh
Confidence            334445555566666666655443  2334445667899999999999998888888777766532 2221    22455


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (727)
                      +|..-...|..+.+-.+-..+|++++.+....+ .+..+..+...=|..+.+.|+|++|..-|-+|..-+.+.+..... 
T Consensus       193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt-  270 (440)
T KOG1464|consen  193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT-  270 (440)
T ss_pred             hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh-
Confidence            666667788888888888889999998865542 222333334445778889999999999998888877766655432 


Q ss_pred             HHHHHHHHHHHHHHhC
Q 004848          599 FGVALNQMGLACVQRY  614 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g  614 (727)
                      ...-|..||..+.+.|
T Consensus       271 tCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  271 TCLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            2334555666666554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.13  E-value=0.0035  Score=62.47  Aligned_cols=257  Identities=12%  Similarity=0.029  Sum_probs=146.3

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHhcccchh-----ccCccch
Q 004848          231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVI-----EEGQEHA  304 (727)
Q Consensus       231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~  304 (727)
                      .+..|+ ++.|..++.++-.... ......-...+..+++.|......+ ++++|..+++++.++...     ...++..
T Consensus         3 A~~~~~-~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~   80 (278)
T PF08631_consen    3 AWKQGD-LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS   80 (278)
T ss_pred             chhhCC-HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence            356776 9999999999988764 2111112567788999999999999 999999999999998532     2233333


Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004848          305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (727)
Q Consensus       305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (727)
                      ...+.++..++.+|...+.++...+ ...+++....-    .|+.+..+..--.++...++.+.+.+.+.+++.-..-..
T Consensus        81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e  155 (278)
T PF08631_consen   81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESE----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE  155 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHh----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence            5677889999999999998764444 33334443332    234334443333334447888999888888877543111


Q ss_pred             CCCCHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHH
Q 004848          385 SPASLEEAADRRLMGLIC--ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA--GFAYQKALT  460 (727)
Q Consensus       385 ~~~~~~~a~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~  460 (727)
                      ..        +..+...+  ........|...+...+...-....+..........-......++....  ++.....+.
T Consensus       156 ~~--------~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~  227 (278)
T PF08631_consen  156 SN--------FDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS  227 (278)
T ss_pred             ch--------HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH
Confidence            10        11111111  1122345566666555532222211111111111111111222222222  444444444


Q ss_pred             HHHHhcC-CCChhH----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          461 AFKTNKG-ENHPAV----ASVFVRLADMYNRTGKLRESKSYCENALR  502 (727)
Q Consensus       461 ~~~~~~~-~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (727)
                      ...+..+ +-.+..    ...+.+.|.-.++.++|++|..+|+-++.
T Consensus       228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            3332221 222222    23455668889999999999999998763

It is also involved in sporulation [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.13  E-value=0.0034  Score=62.58  Aligned_cols=254  Identities=14%  Similarity=0.105  Sum_probs=143.4

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHh----cCCC--CCHH
Q 004848          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKD----NGSP--ASLE  390 (727)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~----~~~~--~~~~  390 (727)
                      ....|+++.|..++.++-..............+..+++.|......+ +++.|..++++++++...    ....  ....
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999877542211112346778899999999999 999999999999999644    1111  1134


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          391 EAADRRLMGLICETKGDHEAALEHLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (727)
Q Consensus       391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (727)
                      ...++..++.+|...+.++...+... ++... ...++++..   +...-.++...++.+.+.+.+.+++....-     
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l~~e~~~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----  153 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALN-ALRLLESEYGNKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSVDH-----  153 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHhCCCCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence            56788999999999988765555332 23322 233343433   222223333378888888888888775210     


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc--ccHHHH--HHHHHHHHH
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM--NELEQA--IKLLQKALK  545 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~  545 (727)
                      ..............+.. .....|...+...+...-..  ..+. ......  +..++...  ++....  ++.+...+.
T Consensus       154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~-~~e~~v--l~~~~~~~~~~~~~~~~~i~~l~~~~~  227 (278)
T PF08631_consen  154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ-WLEKLV--LTRVLLTTQSKDLSSSEKIESLEELLS  227 (278)
T ss_pred             ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH-HHHHHH--HHHHHHHcCCccccchhHHHHHHHHHH
Confidence            01111111111111222 33456666666665543221  1111 121121  22222222  222222  333333343


Q ss_pred             HHHhCCCCCc------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          546 IYNDAPGQQS------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       546 ~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                      ......+.+.      ....++.+.|..+++.++|++|..+|+-++.
T Consensus       228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            3222222221      2234466779999999999999999997763

It is also involved in sporulation [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.00014  Score=69.87  Aligned_cols=116  Identities=21%  Similarity=0.184  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhc
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQEC  634 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  634 (727)
                      +.-|..||.+|..+|++..|...|.+|+++..        .....+..+|.++..+.   ...++..+|++++..     
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----  222 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAG--------DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-----  222 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence            56788999999999999999999999999732        23567778887777554   467899999999999     


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848          635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL  693 (727)
Q Consensus       635 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~  693 (727)
                         +|....+++.||..++..|+|.+|...++..+..    +.++.|....+-..++..
T Consensus       223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~  274 (287)
T COG4235         223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARA  274 (287)
T ss_pred             ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHH
Confidence               9999999999999999999999999999999875    334555544444444443

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=0.0056  Score=59.30  Aligned_cols=301  Identities=13%  Similarity=0.080  Sum_probs=190.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          399 GLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (727)
Q Consensus       399 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (727)
                      +.......++++++..|...+.........+    ..-.....+|.+|...|++.+-..........+....   .+..+
T Consensus        11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kakaa   87 (411)
T KOG1463|consen   11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAA   87 (411)
T ss_pred             HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHH
Confidence            3344445566777777776654322222222    2234567899999999999988777777666655443   34444


Q ss_pred             HHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848          475 SVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       475 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      .....|-..... -+..+.-+.++..+++...+.   .........-..+..+|...++|.+|+.+....+.-.+.. ++
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-DD  163 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-DD  163 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-cc
Confidence            444444444433 345667777888888776542   1111223344578899999999999999999988888776 55


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                      ...+..++..-...|+...+..+|...+..|-.......-+ |...+..-..-|.++....+|..|..||-+|.+-+...
T Consensus       164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~  242 (411)
T KOG1463|consen  164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL  242 (411)
T ss_pred             ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence            55666677777889999999999999888887665544332 22233333444666777789999999999999877665


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHHH
Q 004848          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETL  711 (727)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~a  711 (727)
                      ..  ++....++..+-.|-...+..++-...+..=..+.      ......++....+..+..  +.+|+.|. ..|+.=
T Consensus       243 ~~--~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL-~~yk~e  313 (411)
T KOG1463|consen  243 DD--DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK------YAGRDIDAMKAVAEAFGNRSLKDFEKAL-ADYKKE  313 (411)
T ss_pred             CC--cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh------ccCcchHHHHHHHHHhcCCcHHHHHHHH-HHhHHH
Confidence            43  34445555556666666777766555544322221      123345677777777654  34555565 555544


Q ss_pred             HHHhh
Q 004848          712 LDANS  716 (727)
Q Consensus       712 l~~~p  716 (727)
                      +.-||
T Consensus       314 L~~D~  318 (411)
T KOG1463|consen  314 LAEDP  318 (411)
T ss_pred             HhcCh
Confidence            44443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.09  E-value=6.6e-05  Score=64.06  Aligned_cols=105  Identities=15%  Similarity=0.125  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      ...++.-|...+..|+|.+|++.|+.....+.     .++....+...++.+|...+++++|+..+++-+++     .|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence            45677889999999999999999998776532     23445678899999999999999999999999998     666


Q ss_pred             CccHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHH
Q 004848          638 HPDTLGVYSNLAGTYDAIGR---------------LDDAIEILEFVVGIR  672 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~  672 (727)
                      ||....+++..|.++..+..               ..+|...|++.+..+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            88888899999999998876               778888888888764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.00086  Score=62.37  Aligned_cols=227  Identities=15%  Similarity=0.071  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchh----------ccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004848          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----------EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT  333 (727)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  333 (727)
                      ....|...-.++.++..+++|..-+...-.+...          .++......-+.....-|.+....|+..+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            3445555566677777788877766554443210          011111112233445567777888888888776665


Q ss_pred             HHHHHHHHhC----CCC---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004848          334 GLEVQKQVLG----ETD---------PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL  400 (727)
Q Consensus       334 al~~~~~~~~----~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~  400 (727)
                      .....+++..    ...         .....+.+.++.++.-.+.|.-....+.+.++..+...       ......+|.
T Consensus       148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-------p~L~s~Lgr  220 (366)
T KOG2796|consen  148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-------PQLLSGLGR  220 (366)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------HHHHHHHHH
Confidence            5544333221    011         12334567778888889999999999999998553322       255788999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL  480 (727)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  480 (727)
                      +..+.||.+.|..+|+...+.......-.....+..+.+.+|.-.++|..|...|.+++..        ++..+.+..+.
T Consensus       221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnK  292 (366)
T KOG2796|consen  221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNK  292 (366)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchH
Confidence            9999999999999999877655555555566677888899999999999999999999887        78888999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          481 ADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      |.|+...|+..+|++.++.++....
T Consensus       293 ALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  293 ALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999988843

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.07  E-value=1.9e-05  Score=60.64  Aligned_cols=58  Identities=26%  Similarity=0.381  Sum_probs=54.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      |..+|...+++++|++++++++.+        +|+....+..+|.++..+|++.+|+..|+++++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356889999999999999999999        8999999999999999999999999999999976

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.05  E-value=1.1e-05  Score=77.18  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH
Q 004848          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV  683 (727)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~  683 (727)
                      -..|.-|+++|.|++|+.+|.+++..        +|.....+.+.|.+|+++..|..|..-...|+.+        +..+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence            44688899999999999999999998        8888888999999999999999999999999988        5678


Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+|.+.+.+...+|+..+|. +.++.+|++.|+
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAK-kD~E~vL~LEP~  197 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAK-KDCETVLALEPK  197 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHH-HhHHHHHhhCcc
Confidence            899999999999999999999 999999999997

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.038  Score=61.23  Aligned_cols=251  Identities=14%  Similarity=0.101  Sum_probs=125.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      +....|-.+|.+..+.|. ..+|++.|-+|-         +     ...|.....+..+.|.|++-+.++..|.+..+. 
T Consensus      1102 n~p~vWsqlakAQL~~~~-v~dAieSyikad---------D-----ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E- 1165 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGL-VKDAIESYIKAD---------D-----PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE- 1165 (1666)
T ss_pred             CChHHHHHHHHHHHhcCc-hHHHHHHHHhcC---------C-----cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-
Confidence            445678888888888886 888888887762         1     223566677778888888888888877655321 


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                           +..    -..|..+|.+.++..+-.++.          .|   |+.+. .-..|.-++..+.|+.|.-+|.-.- 
T Consensus      1166 -----~~i----d~eLi~AyAkt~rl~elE~fi----------~g---pN~A~-i~~vGdrcf~~~~y~aAkl~y~~vS- 1221 (1666)
T KOG0985|consen 1166 -----PYI----DSELIFAYAKTNRLTELEEFI----------AG---PNVAN-IQQVGDRCFEEKMYEAAKLLYSNVS- 1221 (1666)
T ss_pred             -----ccc----hHHHHHHHHHhchHHHHHHHh----------cC---CCchh-HHHHhHHHhhhhhhHHHHHHHHHhh-
Confidence                 111    112333444444444322221          11   11111 1223333444444444433332211 


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HHHhCCCC-hhHHHHHHHHH
Q 004848          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM------------------TMIANDQD-AEVASVDCSIG  439 (727)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~-~~~~~~~~~la  439 (727)
                                     -|..|+..+..+|+|+.|...-++|-.                  +....+.+ .-.+.-+-.+.
T Consensus      1222 ---------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1222 ---------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELI 1286 (1666)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHH
Confidence                           123333344444444444443333310                  00001111 11233345566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH---HHhcCCCCCChHhH
Q 004848          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR---IYEKPVPGVPPEEI  516 (727)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~  516 (727)
                      ..|...|-|++-+..++.++.+        .......+..||.+|.+- ++++-.++++-.-.   +-+-.    ..-+.
T Consensus      1287 ~~Yq~rGyFeElIsl~Ea~LGL--------ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKvi----RA~eq 1353 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGL--------ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVI----RAAEQ 1353 (1666)
T ss_pred             HHHHhcCcHHHHHHHHHhhhch--------hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHH----HHHHH
Confidence            7788888888888888888776        344455666777777653 34444443322111   10000    00112


Q ss_pred             HHHHHHHHHHHHhcccHHHHH
Q 004848          517 ASGLTDVSSIYESMNELEQAI  537 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~  537 (727)
                      +..|..+..+|..-..|+.|.
T Consensus      1354 ahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1354 AHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHHHHHHHHHHHhhhhhhHHH
Confidence            445666666666666666553

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.0073  Score=57.00  Aligned_cols=232  Identities=13%  Similarity=0.047  Sum_probs=156.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004848          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (727)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (727)
                      ..+|+-....+++++|+..|.+.+...-..-...-...-.+...++.+|...|++..-.+..........+...+   ..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~---k~   83 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP---KI   83 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch---hH
Confidence            446777778889999999998887651100000012344577899999999999887766666555555444322   11


Q ss_pred             HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          392 AADRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (727)
Q Consensus       392 a~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (727)
                      +.+...+-. .-.....++.-+..+...++..............-..+..+++..|.|.+|+......+.-+++..  +.
T Consensus        84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK  161 (421)
T COG5159          84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DK  161 (421)
T ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cc
Confidence            222222222 222345677777777777766655444444445567788899999999999999999988888775  46


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      +....++..-..+|....+..++..-+..|.......+-  ++...+..-..-|.+++...+|.-|..+|-++++-+...
T Consensus       162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l  239 (421)
T COG5159         162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL  239 (421)
T ss_pred             cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence            777788888899999999999999888888777655431  122233333344666777889999999999998866543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.018  Score=55.76  Aligned_cols=165  Identities=12%  Similarity=-0.019  Sum_probs=130.6

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004848          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (727)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (727)
                      +.+....|++.+|.....+.++-+|...        .++..--.+++..|+...-...+++.+..  -+.+.|-...+..
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G  179 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG  179 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence            4456678899999999999998887653        34666677888899988888888776531  1345566677778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH
Q 004848          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (727)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (727)
                      .++..+...|-|++|.+..++++++        ++....+...++.++...|++.++.++..+.-...+..     ....
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-----~mla  246 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-----WMLA  246 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-----hHHH
Confidence            8899999999999999999999998        78888999999999999999999999988765554331     2233


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848          517 ASGLTDVSSIYESMNELEQAIKLLQKAL  544 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (727)
                      ..-|-..|.++...+.|+.|++.|.+-+
T Consensus       247 sHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  247 SHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            4456677888889999999999998644

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.99  E-value=0.021  Score=61.37  Aligned_cols=191  Identities=14%  Similarity=0.054  Sum_probs=127.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHH----HcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA---SVFVRLADMYN----RTGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      +.--.|+-+.++..+.++.+. ..+.   .|...   ..|+.....+.    .....+.|...+......+         
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~-~~i~---~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---------  263 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKS-ENIR---SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---------  263 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhcc-CCcc---hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---------
Confidence            333568999999999887652 1111   12111   11222211122    2345566777777777763         


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      |.-...+...|+++...|+.++|++.|++++......   ......+++.++.++..+.+|++|..+|.+..+.      
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------  334 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------  334 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------
Confidence            3446678889999999999999999999988533222   1222456889999999999999999999988874      


Q ss_pred             CCchhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848          594 RKSAFFGVALNQMGLACVQRYSI-------NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (727)
                       .....+...+..|.++...|+.       ++|.++|.++-....+..+...|-..-+. ..+.-|...
T Consensus       335 -s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~-RK~~~~~~~  401 (468)
T PF10300_consen  335 -SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVI-RKAQKYEKQ  401 (468)
T ss_pred             -cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHH-HHHHHHHhc
Confidence             2233456677788999999998       89999999998888876665555444333 333334443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.96  E-value=2.8e-05  Score=79.06  Aligned_cols=69  Identities=22%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD---DEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~---~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                      .+|+...+++++|.+|..+|++++|+..|++++++        +|+..   .+++++|.+|..+|++++|+ .+|++|++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAl-a~LrrALe  140 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAA-DCLRTALR  140 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            37888999999999999999999999999999987        46555   56999999999999999999 99999999


Q ss_pred             H
Q 004848          714 A  714 (727)
Q Consensus       714 ~  714 (727)
                      +
T Consensus       141 l  141 (453)
T PLN03098        141 D  141 (453)
T ss_pred             h
Confidence            7

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.96  E-value=0.01  Score=61.84  Aligned_cols=266  Identities=11%  Similarity=0.034  Sum_probs=150.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 004848          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA-VASV  476 (727)
Q Consensus       398 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  476 (727)
                      .+.+..++|+++.-..+....      ....+   ...+..+......++++++..+++++.............. ....
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~------~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~   74 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQS------NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRA   74 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhc------cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            355677889998844443322      11111   3334445555688999999999998887654432111111 1112


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC---CC
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP---GQ  553 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~  553 (727)
                      +..+.. +....+.+++..+........      .....+...|...-.  ....+    ....+..+.+..-..   ..
T Consensus        75 y~~l~~-lq~L~Elee~~~~~~~~~~~~------~~~~~l~~~W~~Rl~--~~~~~----~~~~~~il~~R~~~l~~~~~  141 (352)
T PF02259_consen   75 YPSLVK-LQQLVELEEIIELKSNLSQNP------QDLKSLLKRWRSRLP--NMQDD----FSVWEPILSLRRLVLSLILL  141 (352)
T ss_pred             HHHHHH-HhHHHHHHHHHHHHHhhcccH------HHHHHHHHHHHHHHH--Hhccc----hHHHHHHHHHHHHHHhcccc
Confidence            222211 112223333333331110000      000011111111110  11122    222222222222111   22


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHH
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-ILEQ  632 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~  632 (727)
                      ....+..+..++.+..+.|+++.|...+.++..........    ...+....+.+....|+..+|+..++..+. ....
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~  217 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK  217 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            34556788999999999999999999999877643221111    235666778999999999999999998887 3332


Q ss_pred             hc-------------------------CCCCccHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          633 EC-------------------------GPYHPDTLGVYSNLAGTYDAI------GRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       633 ~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      ..                         .......+.++..+|......      +..+++...|.+++.+        +|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~  289 (352)
T PF02259_consen  218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP  289 (352)
T ss_pred             ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence            20                         111233456778888888888      8899999999999987        57


Q ss_pred             hHHHHHHHHHHHHHHh
Q 004848          682 DVDDEKRRLAELLKEA  697 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~  697 (727)
                      ....+++.+|..+...
T Consensus       290 ~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  290 SWEKAWHSWALFNDKL  305 (352)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            7788888888887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=0.024  Score=68.73  Aligned_cols=410  Identities=11%  Similarity=0.053  Sum_probs=206.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchH
Q 004848          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL  305 (727)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  305 (727)
                      .+|.+-++.+. |..|+-++++- .     ....+.......+..+-.+|...++++........-....          
T Consensus      1388 tLa~aSfrc~~-y~RalmylEs~-~-----~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---------- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKA-YARALMYLESH-R-----STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---------- 1450 (2382)
T ss_pred             HHHHHHHhhHH-HHHHHHHHHHh-c-----cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc----------
Confidence            67777888886 88888887774 0     0011112223334555558999999998777776411110          


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       306 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                          .+...-......|++..|..+|++++..        +|.....+...-...+..|.+...+...+-.......   
T Consensus      1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se--- 1515 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE--- 1515 (2382)
T ss_pred             ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhccCH---
Confidence                1444556677889999999999999887        4554444444444444455555555433322211110   


Q ss_pred             CCCHHHHHHHHHH-HHHHHHcCCHHHHHHHHH-----------HHHHHHHhCCCChhHHHHHHHHHHH----------HH
Q 004848          386 PASLEEAADRRLM-GLICETKGDHEAALEHLV-----------LASMTMIANDQDAEVASVDCSIGDT----------YL  443 (727)
Q Consensus       386 ~~~~~~a~~~~~l-~~~~~~~g~~~~A~~~~~-----------~al~~~~~~~~~~~~~~~~~~la~~----------~~  443 (727)
                          +. .-++.+ -.+.++.++++.-..+..           .+.........+.  ...+..+...          ..
T Consensus      1516 ----~~-~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~--~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1516 ----EV-DELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDE--IATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred             ----HH-HHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccch--hhHHHHHHHHHHHhhhhHHHhh
Confidence                00 111111 122244555554444321           0000000000111  0010011100          01


Q ss_pred             HcCCHHHHHHHHHHHHHHHHH------h----cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          444 SLSRYDEAGFAYQKALTAFKT------N----KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      ..|-|..+.++.-+...+.+-      .    .+++......-|.+....-....+..+-+-.+++++-.....  ..-.
T Consensus      1589 ~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~ 1666 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLK 1666 (2382)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--cccc
Confidence            111233333333222221110      0    011111111122222221111222334444445544333221  1335


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-G  592 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~  592 (727)
                      ...+.+|...|++....|+++.|..++-.|.+..         ...++...|..++..|+...|+..+++.+.....- .
T Consensus      1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred             chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence            5678999999999999999999999888877653         23577889999999999999999999999765432 1


Q ss_pred             CC--------CchhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH----------
Q 004848          593 ER--------KSAFFGVALNQMGLACVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY----------  652 (727)
Q Consensus       593 ~~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----------  652 (727)
                      ..        +......+...++......+++  ..-+++|..+.++        +|..-..++.+|..|          
T Consensus      1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~kll~~~~~~ 1809 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDKLLEDYKSN 1809 (2382)
T ss_pred             CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHHHhhhhhcc
Confidence            11        1111223444455555555553  4556778888887        554444555565433          


Q ss_pred             --HHcCChHH---HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848          653 --DAIGRLDD---AIEILEFVVGIREEKLGTANPDVDDEKRRLAEL  693 (727)
Q Consensus       653 --~~~g~~~~---A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~  693 (727)
                        .+.|++..   |+..|.+++..-.+.+-..-|.....|..+|..
T Consensus      1810 ~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~ 1855 (2382)
T KOG0890|consen 1810 KMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTH 1855 (2382)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcch
Confidence              23455555   555555665432222222234444445444433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.94  E-value=3.5e-05  Score=78.38  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=62.4

Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG---VYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      .+..+..++++|.+|...|+|++|+..|++|+++        +|+...   +|+++|.+|..+|++++|+.+|++|+++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999999999        777764   5999999999999999999999999986

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.93  E-value=3e-05  Score=59.61  Aligned_cols=61  Identities=25%  Similarity=0.319  Sum_probs=57.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      |..+|...+++++|+.++++++.+        +|+....+..+|.++...|++.+|. ..|+++++..|+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p~   61 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSPD   61 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCCC
Confidence            457899999999999999999987        7889999999999999999999999 999999999997

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.85  E-value=5e-05  Score=57.34  Aligned_cols=53  Identities=30%  Similarity=0.374  Sum_probs=49.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      +..|++++|+..|++++..        .|....++..+|.+|...|++++|...+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999998        8999999999999999999999999999998887

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.034  Score=53.97  Aligned_cols=219  Identities=14%  Similarity=0.012  Sum_probs=149.9

Q ss_pred             cccCCCCCChHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004848          211 SEAGLDKPGLGPLL-LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (727)
Q Consensus       211 ~~~~~~~p~~~~~l-~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  289 (727)
                      ..+...+|+...+. +.+|......+.+.+.|.. +++|+.-..+.+..      ..-+..-+.+.+..|++.+|...++
T Consensus        55 ~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~-~dqav~dav~y~~a------rEk~h~~aai~~~~g~~h~a~~~wd  127 (491)
T KOG2610|consen   55 EKLSSSDPEAVMARTFALGLVLIAAASNVEFAKK-MDQAVIDAVKYGNA------REKRHAKAAILWGRGKHHEAAIEWD  127 (491)
T ss_pred             HHHhcCChHHHHHHHHHHhhhhhhccchhhHHHH-HHHHHHHHHHHhhh------HHhhhhhHHHhhccccccHHHHHHH
Confidence            44556677644433 4455555566664444433 45554444333221      1224445667788999999999999


Q ss_pred             HhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004848          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (727)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (727)
                      +.++-.     |    ..+-++..--.+++.+|+...-...+++.+...    ..+-|-...+.-.++..+...|-|++|
T Consensus       128 klL~d~-----P----tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  128 KLLDDY-----P----TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             HHHHhC-----c----hhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            998765     2    223345566678888999988888888877652    223455677777888899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH
Q 004848          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD  449 (727)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  449 (727)
                      .+...+++++++..        ..+....+.++...|++.++.++..+.....+.  .......-|...|.++...+.|+
T Consensus       195 Ek~A~ralqiN~~D--------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~Al~~iE~aeye  264 (491)
T KOG2610|consen  195 EKQADRALQINRFD--------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHTALFHIEGAEYE  264 (491)
T ss_pred             HHHHHhhccCCCcc--------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHHHHhhhcccchh
Confidence            99999999998655        356778889999999999999987765322210  11223445667888999999999


Q ss_pred             HHHHHHHHHH
Q 004848          450 EAGFAYQKAL  459 (727)
Q Consensus       450 ~A~~~~~~al  459 (727)
                      .|++.|.+-+
T Consensus       265 ~aleIyD~ei  274 (491)
T KOG2610|consen  265 KALEIYDREI  274 (491)
T ss_pred             HHHHHHHHHH
Confidence            9999998643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.81  E-value=4.1e-05  Score=51.26  Aligned_cols=41  Identities=44%  Similarity=0.707  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (727)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (727)
                      +.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            45789999999999999999999999999999999999985

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.76  E-value=0.073  Score=55.43  Aligned_cols=50  Identities=16%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848          598 FFGVALNQMGLACVQR------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (727)
                      ..+.++..+|......      +..++++..|.+++.+        +|....+++.+|..+...
T Consensus       250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence            4567778888887777      8899999999999999        888888999998887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.75  E-value=0.12  Score=57.13  Aligned_cols=222  Identities=19%  Similarity=0.112  Sum_probs=128.7

Q ss_pred             ccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCh
Q 004848          202 GKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY  281 (727)
Q Consensus       202 ~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  281 (727)
                      ++-.|......+...+|+..-+....|..+++.|+ +++|..+++ ++..      ..++  .-..+..+-.+|..++++
T Consensus        24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le-~~~~------~~~~--D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLE-ALYG------LKGT--DDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHh-hhcc------CCCC--chHHHHHHHHHHHHHhhh
Confidence            33344455666778899999999999999999998 888884443 3332      1121  244577788999999999


Q ss_pred             hHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH-HHHHH
Q 004848          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY-LAEAH  360 (727)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-la~~~  360 (727)
                      ++|..+|++++...     +. .    ..++.+=.+|.+.+.|.+-.+.   ++++++.     -|..+..+.. +..+.
T Consensus        94 d~~~~~Ye~~~~~~-----P~-e----ell~~lFmayvR~~~yk~qQka---a~~LyK~-----~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   94 DEAVHLYERANQKY-----PS-E----ELLYHLFMAYVREKSYKKQQKA---ALQLYKN-----FPKRAYYFWSVISLIL  155 (932)
T ss_pred             hHHHHHHHHHHhhC-----Cc-H----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHh-----CCcccchHHHHHHHHH
Confidence            99999999999876     22 1    1245555666776666544333   3333332     2333222222 22222


Q ss_pred             HHhcCHH---------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 004848          361 VQALQFS---------EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (727)
Q Consensus       361 ~~~g~~~---------~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (727)
                      ......+         -|...+++.++..   +.......   ....-.+...+|++++|.+.+..-+.  .  ...+..
T Consensus       156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~---gk~~s~aE---~~Lyl~iL~~~~k~~eal~~l~~~la--~--~l~~~~  225 (932)
T KOG2053|consen  156 QSIFSENELLDPILLALAEKMVQKLLEKK---GKIESEAE---IILYLLILELQGKYQEALEFLAITLA--E--KLTSAN  225 (932)
T ss_pred             HhccCCcccccchhHHHHHHHHHHHhccC---CccchHHH---HHHHHHHHHhcccHHHHHHHHHHHHH--H--hccccc
Confidence            2222222         2344444444332   11111111   22334566778999999998853321  1  112222


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (727)
                      ..........+...++|.+-.+...+++..
T Consensus       226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  226 LYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             hHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            233344566777788888877777777665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.71  E-value=0.0029  Score=64.87  Aligned_cols=188  Identities=16%  Similarity=0.203  Sum_probs=121.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHH
Q 004848          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (727)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (727)
                      ..-..+..+...-++...+|+++         .++.+.+|..||.-  ...-..+|..+|+++++..+...+...     
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei---------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~-----  238 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEI---------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ-----  238 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHh---------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh-----
Confidence            33445567778888888999998         45556666666542  233467899999999988766543211     


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc-
Q 004848          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-  639 (727)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  639 (727)
                            .....|.+-++.  .           ..+......+-..+|.+..+.|+.++|++.|+..++.        .| 
T Consensus       239 ------~~~~~g~~~e~~--~-----------~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke--------~p~  291 (539)
T PF04184_consen  239 ------FLQHHGHFWEAW--H-----------RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE--------FPN  291 (539)
T ss_pred             ------hhhcccchhhhh--h-----------ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCc
Confidence                  111112111110  0           0011123456677899999999999999999998876        33 


Q ss_pred             -cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-hCC---------------hhH
Q 004848          640 -DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE-AGR---------------VRS  702 (727)
Q Consensus       640 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~-~g~---------------~~~  702 (727)
                       +...++.+|..++..++.|.++...+.+.-++       .-|..+...+.-|.+..+ .|+               ...
T Consensus       292 ~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~  364 (539)
T PF04184_consen  292 LDNLNIRENLIEALLELQAYADVQALLAKYDDI-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMN  364 (539)
T ss_pred             cchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHH
Confidence             35668999999999999999999888876432       135556555555554332 222               124


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 004848          703 RKAQSLETLLDANSRVN  719 (727)
Q Consensus       703 A~~~~l~~al~~~p~~~  719 (727)
                      |+ +.+.+|++.||.+.
T Consensus       365 av-eAi~RAvefNPHVp  380 (539)
T PF04184_consen  365 AV-EAIHRAVEFNPHVP  380 (539)
T ss_pred             HH-HHHHHHHHhCCCCc
Confidence            66 78899999999844

The molecular function of this protein is uncertain.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.68  E-value=0.016  Score=60.18  Aligned_cols=112  Identities=22%  Similarity=0.272  Sum_probs=83.7

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004848          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL  288 (727)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  288 (727)
                      ...+....+|..+..+..-+..|-..|+ ..+|+.|+..|+-.....       ..-.++..+|.++.+.|...+|--++
T Consensus       201 ~~~~glq~~~~sw~lH~~as~YWR~~G~-~~~A~~Ca~~a~hf~~~h-------~kdi~lLSlaTiL~RaG~sadA~iIL  272 (886)
T KOG4507|consen  201 LIHEGLQKNTSSWVLHNMASFYWRIKGE-PYQAVECAMRALHFSSRH-------NKDIALLSLATVLHRAGFSADAAVIL  272 (886)
T ss_pred             HHHHhhhcCchhHHHHHHHHHHHHHcCC-hhhhhHHHHHHhhhCCcc-------cccchhhhHHHHHHHcccccchhhee
Confidence            3445556677777776666666666775 999999999998764322       12235777999999999999999988


Q ss_pred             HHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (727)
Q Consensus       289 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (727)
                      ..|+.-.....+         -++.++.++.+++.+...+.+|..+.+.
T Consensus       273 hAA~~dA~~~t~---------n~y~l~~i~aml~~~N~S~~~ydha~k~  312 (886)
T KOG4507|consen  273 HAALDDADFFTS---------NYYTLGNIYAMLGEYNHSVLCYDHALQA  312 (886)
T ss_pred             ehhccCCccccc---------cceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence            877765422222         2678999999999999999999988776

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.67  E-value=0.086  Score=53.54  Aligned_cols=143  Identities=10%  Similarity=0.015  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchH-HHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Q 004848          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL-AKFAGHMQ-LGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (727)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (727)
                      +...|.++..++++.+|...|.+..+...     ..+. ..-.++.+ +-++| -+.+    +...+..+...++.    
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~-----~~~f~lkeEvl~grilnAf-fl~n----ld~Me~~l~~l~~~----   74 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKE-----SSPFLLKEEVLGGRILNAF-FLNN----LDLMEKQLMELRQQ----   74 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhh-----cchHHHHHHHHhhHHHHHH-HHhh----HHHHHHHHHHHHHh----
Confidence            44568889999999999999999876531     1111 11112222 22232 2333    34444444444443    


Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC---CHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---SLE----EAADRRLMGLICETKGDHEAALEHLVLA  418 (727)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~----~a~~~~~l~~~~~~~g~~~~A~~~~~~a  418 (727)
                      .|.........|...++.++|.+|++.+............+-   ...    ....-...+.++...|.+.++...+++.
T Consensus        75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i  154 (549)
T PF07079_consen   75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI  154 (549)
T ss_pred             cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            345556677788889999999999988766554432222110   000    0111234577889999999999999988


Q ss_pred             HHHHHh
Q 004848          419 SMTMIA  424 (727)
Q Consensus       419 l~~~~~  424 (727)
                      +..+-.
T Consensus       155 ~~~llk  160 (549)
T PF07079_consen  155 IERLLK  160 (549)
T ss_pred             HHHHhh
Confidence            755443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00054  Score=62.92  Aligned_cols=108  Identities=16%  Similarity=0.051  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC---CCccH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGP---YHPDT-------LGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      .++..-|.-++..|+|.+|...|..|+...+.+.-.   ..|..       ...+.+.+.|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            466777888999999999999999999887775432   23332       23678999999999999999999999886


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .        +|.+..+++..|.+....=+..+|. ..|.++|+++|.
T Consensus       259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~-~D~~~vL~ldps  296 (329)
T KOG0545|consen  259 H--------HPGNVKAYFRRAKAHAAVWNEAEAK-ADLQKVLELDPS  296 (329)
T ss_pred             c--------CCchHHHHHHHHHHHHhhcCHHHHH-HHHHHHHhcChh
Confidence            5        8999999999999999999999999 999999999997

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.66  E-value=0.032  Score=61.41  Aligned_cols=279  Identities=15%  Similarity=0.079  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHH
Q 004848          324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA-----LQFSEAQKFCQMALDI---HKDNGSPASLEEAADR  395 (727)
Q Consensus       324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~---~~~~~~~~~~~~a~~~  395 (727)
                      ...|..+|+.+...          ....+...+|.+|..-     .+.+.|+.+|+.+...   ......      ..+.
T Consensus       228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------~~a~  291 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL------PPAQ  291 (552)
T ss_pred             hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC------Cccc
Confidence            56788888877666          3556777777777654     5899999999999872   111111      1347


Q ss_pred             HHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcC
Q 004848          396 RLMGLICETKG-----DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKG  467 (727)
Q Consensus       396 ~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~  467 (727)
                      +.+|.+|....     ++..|+.+|.++..        .....+.+.+|.++..-.   ++..|..+|..|...      
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------  357 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAE--------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------  357 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHh--------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence            78999998753     77889999988853        223356678888887755   578999999988764      


Q ss_pred             CCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Q 004848          468 ENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQK  542 (727)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~  542 (727)
                          ....+.+.++.+|..    .-+...|..++.++.+.-        +   +.+...++.++..- ++++.+...+..
T Consensus       358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~  422 (552)
T KOG1550|consen  358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--------N---PSAAYLLGAFYEYGVGRYDTALALYLY  422 (552)
T ss_pred             ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--------C---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence                345778888888875    357889999999998872        1   22233334333322 677766666555


Q ss_pred             HHHHHHhCCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh----C
Q 004848          543 ALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----Y  614 (727)
Q Consensus       543 al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g  614 (727)
                      .....-....   ..+..+..........    .+...+...+.++...          ....+...+|.+|..-    .
T Consensus       423 ~a~~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  423 LAELGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HHHhhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCC
Confidence            4444322210   0011111111111111    1344455555554432          1346777888887754    3


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHH
Q 004848          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI---GRLDDAIEILEFVVGI  671 (727)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~  671 (727)
                      +++.|...|..|...        .   ....+++|.++..-   ..+..|..+|.++...
T Consensus       490 d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE  538 (552)
T ss_pred             ChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence            699999999999876        3   77899999998752   1268888888888753

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.12  Score=63.16  Aligned_cols=371  Identities=12%  Similarity=0.045  Sum_probs=191.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhcccchhccCccch-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (727)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (727)
                      .+|.+-++.+.|..|+-++++- ..      .+.. ...-..+..+-.+|...++++.-......-..         +|.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS 1451 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-cc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc
Confidence            6788889999999999999985 11      1111 11222345555689999998876665543111         122


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (727)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (727)
                          +...-..+...|++..|..+|++++...+.....        +..+-......|.+...+.+.+-...      ..
T Consensus      1452 ----l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~--------~~g~l~sml~~~~l~t~i~~~dg~~~------~~ 1513 (2382)
T KOG0890|consen 1452 ----LYQQILEHEASGNWADAAACYERLIQKDPDKEKH--------HSGVLKSMLAIQHLSTEILHLDGLII------NR 1513 (2382)
T ss_pred             ----HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccc--------hhhHHHhhhcccchhHHHhhhcchhh------cc
Confidence                2334445667899999999999999887764321        33333344455556555554332211      11


Q ss_pred             hhHHHHHHHHH-HHHHHcCCHHHHHHHHH-------HHHHHHHHhcCCCChhHHHHHHHHHHHH----------HHcCCh
Q 004848          429 AEVASVDCSIG-DTYLSLSRYDEAGFAYQ-------KALTAFKTNKGENHPAVASVFVRLADMY----------NRTGKL  490 (727)
Q Consensus       429 ~~~~~~~~~la-~~~~~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~~----------~~~g~~  490 (727)
                      .+...-++.++ .+-...++++.-..+..       .+..+..........+....+..+....          ...|-|
T Consensus      1514 se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1514 SEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred             CHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence            11111222221 22244455544443321       0000000000000001111111111110          011122


Q ss_pred             HHHHHHHHHHHHH---------HhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004848          491 RESKSYCENALRI---------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE  561 (727)
Q Consensus       491 ~~A~~~~~~al~~---------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  561 (727)
                      ..+.++.-+...+         ..+.-++.+......-|.+....-....+..+-+-.+++++-.....++....++.+|
T Consensus      1594 ~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence            2333322222111         1111111111111111222211111122244445555665555444445566889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CC--CC
Q 004848          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GP--YH  638 (727)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~--~~  638 (727)
                      ...|.+....|+++.|..++-.|.+..          .+.++...|..++..|+-..|+..+++.+....... ++  +.
T Consensus      1674 LqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence            999999999999999999988887641          356888899999999999999999999997644321 11  01


Q ss_pred             cc------HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848          639 PD------TLGVYSNLAGTYDAIGRL--DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (727)
Q Consensus       639 ~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (727)
                      |.      ...+...++......|++  ++-+.+|+.+.++        +|...+.++.||.
T Consensus      1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGK 1797 (2382)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHH
Confidence            11      122445555666666664  3456677777766        3444444555553

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.65  E-value=0.0021  Score=65.82  Aligned_cols=133  Identities=15%  Similarity=0.100  Sum_probs=96.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc--
Q 004848          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH--  303 (727)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--  303 (727)
                      ......++.. ++++-+++..+|+++.         |+.+.+|..||.-.  ..-..+|..+|+++++..+...+...  
T Consensus       173 ~IMq~AWRER-np~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~  240 (539)
T PF04184_consen  173 EIMQKAWRER-NPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFL  240 (539)
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence            3444455555 4999999999999986         44477777666532  23467888888888876543333211  


Q ss_pred             --------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004848          304 --------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (727)
Q Consensus       304 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (727)
                                    ....+.+-..+|.|..++|+.++|++.|+..++...      ..+...++.+|..++...+.|.++
T Consensus       241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~  314 (539)
T PF04184_consen  241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADV  314 (539)
T ss_pred             hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHH
Confidence                          111234567899999999999999999999988731      123567899999999999999999


Q ss_pred             HHHHHHH
Q 004848          370 QKFCQMA  376 (727)
Q Consensus       370 ~~~~~~a  376 (727)
                      ..++.+.
T Consensus       315 q~lL~kY  321 (539)
T PF04184_consen  315 QALLAKY  321 (539)
T ss_pred             HHHHHHh
Confidence            9888774

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.60  E-value=0.034  Score=56.43  Aligned_cols=207  Identities=11%  Similarity=0.048  Sum_probs=125.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 004848          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS  524 (727)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  524 (727)
                      ...+..+...+.+.+...+...+...-....+..++-..|....+|+.-+.+.+..-.+-     ..+......+....|
T Consensus       112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-----~~~~~~~~~i~~~ya  186 (374)
T PF13281_consen  112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-----TCDVANQHNIKFQYA  186 (374)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-----ccchhcchHHHHHHH
Confidence            334444555556666655555543233345666777888999999998888877665541     111233345566778


Q ss_pred             HHHHh---cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhC
Q 004848          525 SIYES---MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       525 ~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~  592 (727)
                      .++.+   .|+.++|+..+..++.....      ....++..+|.+|...         ...++|+..|.++.++-    
T Consensus       187 fALnRrn~~gdre~Al~il~~~l~~~~~------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~----  256 (374)
T PF13281_consen  187 FALNRRNKPGDREKALQILLPVLESDEN------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE----  256 (374)
T ss_pred             HHHhhcccCCCHHHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----
Confidence            88888   89999999999887554322      1245667777777543         23566666666666542    


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HH---HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR-SI---LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~---~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                         +.  ...=.+++.++...|...+...-+++.. .+   ..+....+.-...+.+..++.+..-.|++++|..+++++
T Consensus       257 ---~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  257 ---PD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             ---cc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               11  1233455666666665444333333333 11   111111122334456677888889999999999999999


Q ss_pred             HHH
Q 004848          669 VGI  671 (727)
Q Consensus       669 l~~  671 (727)
                      +.+
T Consensus       332 ~~l  334 (374)
T PF13281_consen  332 FKL  334 (374)
T ss_pred             hhc
Confidence            976

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00045  Score=63.34  Aligned_cols=100  Identities=22%  Similarity=0.305  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (727)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (727)
                      +..-|..++...+|+.|+..|.+++.+        +|..+..|.+.+.+|++..+++.+..-..+++++         .+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~   75 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DP   75 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------Ch
Confidence            344567778888999999999999998        8999999999999999999999999999999999         66


Q ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      ..+..++.+|........|++|+..+++|..+....+
T Consensus        76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            7789999999999999999999999999999887653

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.0029  Score=58.28  Aligned_cols=105  Identities=20%  Similarity=0.240  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch----------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA----------FFGVALNQMGLACVQRYSINEAVELFEEARS  628 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (727)
                      .++..-|.-+++.|+|.+|...|..|+..++.+.-...+          .....+.+++.|++..|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            456677899999999999999999999987765322111          1234678899999999999999999999999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      .        +|....+|+..|.+....=+..+|..-|.+++++
T Consensus       259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            8        9999999999999999999999999999999987

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.54  E-value=0.00018  Score=48.03  Aligned_cols=41  Identities=44%  Similarity=0.531  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (727)
                      +.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46889999999999999999999999999999999998885

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.53  E-value=0.011  Score=52.63  Aligned_cols=124  Identities=22%  Similarity=0.280  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCCch
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS-DSYDSFKNAISKLRAIGERKSA  597 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~  597 (727)
                      .+...|......++...++..+++++.++...+-.....              ..|- .....+..              
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~--------------   59 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLRE--------------   59 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHH--------------
Confidence            344456666777889999999999998886442211000              1111 11111211              


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (727)
                      ....++..++..+...|++++|+.++++++..        +|..-.++..+..+|...|+..+|+..|+++.....+-+|
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg  131 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG  131 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence            13356777888999999999999999999999        9999999999999999999999999999999999887777


Q ss_pred             C
Q 004848          678 T  678 (727)
Q Consensus       678 ~  678 (727)
                      .
T Consensus       132 ~  132 (146)
T PF03704_consen  132 I  132 (146)
T ss_dssp             -
T ss_pred             c
Confidence            4

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.007  Score=54.20  Aligned_cols=140  Identities=15%  Similarity=0.156  Sum_probs=96.8

Q ss_pred             HHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCC-----------C--CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          563 QMGVMYYMLGNY---SDSYDSFKNAISKLRAIGE-----------R--KSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       563 ~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~-----------~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                      ..|.-|+...+.   .+|-..|++++.....-..           .  ...+-..+...++..+...+++++|+..++.+
T Consensus        36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~  115 (207)
T COG2976          36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA  115 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            345555554443   3666677776665421111           1  11223345566788899999999999999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHH
Q 004848          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQ  706 (727)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~  706 (727)
                      +.....     ..-...+-.+||.+...+|.+++|+..+.....         +.-........|.++...|+.++|+ .
T Consensus       116 l~~t~D-----e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w~~~~~elrGDill~kg~k~~Ar-~  180 (207)
T COG2976         116 LAQTKD-----ENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESWAAIVAELRGDILLAKGDKQEAR-A  180 (207)
T ss_pred             Hccchh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccHHHHHHHHhhhHHHHcCchHHHH-H
Confidence            865211     122233667899999999999999998876553         2233444566799999999999999 9


Q ss_pred             HHHHHHHHhhh
Q 004848          707 SLETLLDANSR  717 (727)
Q Consensus       707 ~l~~al~~~p~  717 (727)
                      .|+++++.++.
T Consensus       181 ay~kAl~~~~s  191 (207)
T COG2976         181 AYEKALESDAS  191 (207)
T ss_pred             HHHHHHHccCC
Confidence            99999998654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.49  E-value=0.028  Score=59.16  Aligned_cols=83  Identities=10%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (727)
                      .+..++..+.....+.-|.+.|.+.-+.               ..+..++...++|++|..+.++.           +..
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------------ksiVqlHve~~~W~eAFalAe~h-----------Pe~  802 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------------KSLVQLHVETQRWDEAFALAEKH-----------PEF  802 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhccH---------------HHHhhheeecccchHhHhhhhhC-----------ccc
Confidence            3444444455555555555555443221               12344556667777766554432           233


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEAR  627 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (727)
                      ...+|...|+.+....++++|.+.|.+|-
T Consensus       803 ~~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  803 KDDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            34455566666666666666666665553

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0011  Score=63.97  Aligned_cols=106  Identities=14%  Similarity=0.166  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (727)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (727)
                      .+.-+-.-|.-|+...+|..|+..|.+.|...     ..++...+.+|.+.|-+....|+|..|+.-..+++.+      
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            56667778999999999999999999999875     4555567778999999999999999999999999999      


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (727)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (727)
                        +|....+++.-|.|++.+.++.+|..+++..+.+...
T Consensus       149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence              8999999999999999999999999999999877643

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.49  E-value=0.019  Score=63.15  Aligned_cols=283  Identities=19%  Similarity=0.164  Sum_probs=179.9

Q ss_pred             ChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 004848          280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML-----GQLENSLMCYTTGLEVQKQVLGETDPRVGETCR  354 (727)
Q Consensus       280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  354 (727)
                      ....|..+++.+....           .+.....+|.+|..-     .+.+.|+.+|..+.....+..   ......+.+
T Consensus       227 ~~~~a~~~~~~~a~~g-----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~  292 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLG-----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQY  292 (552)
T ss_pred             hhhHHHHHHHHHHhhc-----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCcccc
Confidence            3567888888887653           233467778877654     689999999999988321110   111334678


Q ss_pred             HHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCC
Q 004848          355 YLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       355 ~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~  426 (727)
                      .+|.+|....     ++..|..+|.++-.....          .+.+.+|.++....   ++..|.++|..|..      
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~----------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------  356 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP----------DAQYLLGVLYETGTKERDYRRAFEYYSLAAK------  356 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHcCCccccHHHHHHHHHHHHH------
Confidence            8999988753     678899998887665422          45888898888766   67899999998853      


Q ss_pred             CChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 004848          427 QDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENAL  501 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al  501 (727)
                        .....+.+.++.+|..    .-+...|..++.++.+.        .  .+.+...++.++..- ++++.+...+....
T Consensus       357 --~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a  424 (552)
T KOG1550|consen  357 --AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------G--NPSAAYLLGAFYEYGVGRYDTALALYLYLA  424 (552)
T ss_pred             --cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------c--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence              2344577788888764    34788999999999886        2  233344444444332 78888777776665


Q ss_pred             HHHhcCCCCCChHhHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc----CC
Q 004848          502 RIYEKPVPGVPPEEIASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GN  573 (727)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~  573 (727)
                      +..-..     ....+..+..........    .+...+...+.++...     |.    ..+...+|.+|+.-    .+
T Consensus       425 ~~g~~~-----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g~----~~a~~~lgd~y~~g~g~~~d  490 (552)
T KOG1550|consen  425 ELGYEV-----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----GN----ADAILKLGDYYYYGLGTGRD  490 (552)
T ss_pred             HhhhhH-----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----cC----HHHHhhhcceeeecCCCCCC
Confidence            552111     111111111111111111    1344455555544332     11    24556778877764    36


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Q 004848          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---YSINEAVELFEEARSI  629 (727)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~  629 (727)
                      ++.|...|..+...          . +...+++|.++..-   ..+..|..+|.++...
T Consensus       491 ~~~a~~~y~~a~~~----------~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  491 PEKAAAQYARASEQ----------G-AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE  538 (552)
T ss_pred             hHHHHHHHHHHHHh----------h-hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence            89999999988764          1 57788888887642   1268888888888765

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.45  E-value=0.017  Score=58.52  Aligned_cols=206  Identities=15%  Similarity=0.084  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (727)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (727)
                      ..+...+.+.+...++.+. ........+..++-..|....+|+.-+.+.+..-.+ +...  ......+....|.++.+
T Consensus       116 ~g~~~~l~~~L~~i~~rLd-~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~--~~~~~~i~~~yafALnR  191 (374)
T PF13281_consen  116 SGARKELAKELRRIRQRLD-DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD--VANQHNIKFQYAFALNR  191 (374)
T ss_pred             hhHHHHHHHHHHHHHHhhC-CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc--hhcchHHHHHHHHHHhh
Confidence            3334444444444444332 112223455667777888889998877777654443 1110  11123455677888888


Q ss_pred             ---cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          571 ---LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---------YSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       571 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                         .|+.++|+..+..++...       ....+.++..+|.+|-..         ...++|+..|.++.++        .
T Consensus       192 rn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~  256 (374)
T PF13281_consen  192 RNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------E  256 (374)
T ss_pred             cccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------C
Confidence               899999999998875431       112346777778777532         2366777777777776        4


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG----TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g----~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                      ++.. .-.|++.++...|...+...-+++........+|    ......-..+..++++..-.|++++|. +.+++++.+
T Consensus       257 ~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~-~a~e~~~~l  334 (374)
T PF13281_consen  257 PDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI-QAAEKAFKL  334 (374)
T ss_pred             cccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhc
Confidence            4432 3457777788888755555444444422222222    112233344556788888899999999 999999999


Q ss_pred             hhh
Q 004848          715 NSR  717 (727)
Q Consensus       715 ~p~  717 (727)
                      .|.
T Consensus       335 ~~~  337 (374)
T PF13281_consen  335 KPP  337 (374)
T ss_pred             CCc
Confidence            887

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.031  Score=50.18  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (727)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (727)
                      ...++..+...+++++|+..++.++....     +......+-.+||++..++|.+++|+..+.....         +..
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w  157 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESW  157 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccH
Confidence            45678888999999999999999886422     2334566778899999999999999998876543         234


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      ........|.++...|+-++|+..|+++++.
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            4456678899999999999999999999986

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.42  E-value=0.033  Score=45.31  Aligned_cols=120  Identities=19%  Similarity=0.186  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          516 IASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       516 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                      ++.+|..|+..  .+..|-|++|...+.+++++....|....     .-+.++..|+..+..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            34555555544  45568899999999999999887765432     335567789999999999999999999999998


Q ss_pred             HHhCCCCc---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          589 RAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       589 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      .+-++.+.   .....+.++.|..+...|+.++|+..|+.+.++..+..|
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            87765543   234456677888999999999999999999999777655

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.0007  Score=62.12  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (727)
                      +..-|..|+...+|..|+.+|.+|+.+        +|..+..+.+.|.||.++.+++.+..-..+++++        .|+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N   76 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN   76 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence            334466677778899999999999999        9999989999999999999999999999999987        699


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+.+++.||.++.....+++|+ ..|.+|..+..+
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI-~~Lqra~sl~r~  110 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAI-KVLQRAYSLLRE  110 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHH-HHHHHHHHHHhc
Confidence            9999999999999999999999 999999877655

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.33  E-value=0.0093  Score=54.50  Aligned_cols=125  Identities=17%  Similarity=0.240  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccH
Q 004848          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (727)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (727)
                      -++.-++.++...+  ......++..+|..|.+.|+++.|++.|.++....      .........+..+..+....+++
T Consensus        18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------~~~~~~id~~l~~irv~i~~~d~   89 (177)
T PF10602_consen   18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC------TSPGHKIDMCLNVIRVAIFFGDW   89 (177)
T ss_pred             HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHhCCH
Confidence            33444444333332  46677899999999999999999999999988773      33556788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      .....++.++-.+.... +++.........-|..+...++|.+|...|-.+...
T Consensus        90 ~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   90 SHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            99999999999887764 554444555666788888899999999998877643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.33  E-value=0.0016  Score=57.68  Aligned_cols=92  Identities=16%  Similarity=0.207  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (727)
                      ++.|.+.++.....        +|...+.+++.|.++..+.++   .++..+++.|+.-+++.+. -+|+..++++.||.
T Consensus         7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence            56677777776666        888888889888888776443   3344444444433333221 16999999999999


Q ss_pred             HHHHhCC-----------hhHHHHHHHHHHHHHhhh
Q 004848          693 LLKEAGR-----------VRSRKAQSLETLLDANSR  717 (727)
Q Consensus       693 ~~~~~g~-----------~~~A~~~~l~~al~~~p~  717 (727)
                      +|..++.           +++|. .+|++|...+|.
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~  112 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPN  112 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT
T ss_pred             HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCC
Confidence            9987664           66788 888889988886

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.28  Score=51.28  Aligned_cols=221  Identities=12%  Similarity=0.031  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004848          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (727)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (727)
                      .+.-+..+...|+.+.|+..+..++....+      .-....++.+|.++..+.+|..|...+....+...-..      
T Consensus       270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~------  337 (546)
T KOG3783|consen  270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH------  337 (546)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH------
Confidence            556788888888899999999998884222      23456778899999999999999999988777653221      


Q ss_pred             HHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHHhCCCC-hhHHH----------------------HHHHH
Q 004848          391 EAADRRLMG-LICE--------TKGDHEAALEHLVLASMTMIANDQD-AEVAS----------------------VDCSI  438 (727)
Q Consensus       391 ~a~~~~~l~-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~----------------------~~~~l  438 (727)
                       + .|..++ .|+.        ..|+.+.|..+++....++...+.. |....                      -++.+
T Consensus       338 -a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El  415 (546)
T KOG3783|consen  338 -A-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL  415 (546)
T ss_pred             -H-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence             1 233333 2322        2346666766666655444432211 11000                      11222


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      +  |+..|--.-+.....++...+....-.+..+...-+..+|.++..+|+...|..+|..+++.....  ..++...+.
T Consensus       416 ~--Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--~~d~w~~Pf  491 (546)
T KOG3783|consen  416 A--YFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--TEDLWAVPF  491 (546)
T ss_pred             H--HHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--ccccccccH
Confidence            2  222221111111112222222221111334456677788999999999999999999888653322  345566788


Q ss_pred             HHHHHHHHHHhccc-HHHHHHHHHHHHHHHHh
Q 004848          519 GLTDVSSIYESMNE-LEQAIKLLQKALKIYND  549 (727)
Q Consensus       519 ~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  549 (727)
                      +++.+|.+|..+|. ..++..++.+|.....+
T Consensus       492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  492 ALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            99999999999999 99999999999876543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0071  Score=58.55  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=95.0

Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (727)
                      +.++..+.-+-.-|.-|++..+|..|+.+|.+.+..  +.  .++...+.+|.+.|.+....|+|..|+.-..+|+.+  
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--  148 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KC--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--  148 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cC--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            445556777778899999999999999999999874  22  234567889999999999999999999999999999  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                            +|....+++.=|.|+..+.++.+|..+.+..+.+.
T Consensus       149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                  99999999999999999999999999998887664

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.29  Score=51.24  Aligned_cols=239  Identities=12%  Similarity=0.007  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004848          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (727)
Q Consensus       394 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (727)
                      ....-+..+...|+.+.|+..+...+.    ..........++.+|.++..+.+|..|...+....+.        ....
T Consensus       269 wll~~ar~l~~~g~~eaa~~~~~~~v~----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de--------sdWS  336 (546)
T KOG3783|consen  269 WLLMEARILSIKGNSEAAIDMESLSIP----IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE--------SDWS  336 (546)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh--------hhhh
Confidence            355667777777777777777776653    0111223445667777888888888888877776665        2222


Q ss_pred             HHHHHHH-HHHHHH--------cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848          474 ASVFVRL-ADMYNR--------TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (727)
Q Consensus       474 ~~~~~~l-a~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (727)
                      ...|..+ |.|+..        .|+-+.|-.+++....+....  +.+.|...                    -..+++-
T Consensus       337 ~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a--~K~~P~E~--------------------f~~RKve  394 (546)
T KOG3783|consen  337 HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA--GKNLPLEK--------------------FIVRKVE  394 (546)
T ss_pred             HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc--cccCchhH--------------------HHHHHHH
Confidence            2222222 333322        234444444444444433321  11111100                    0111222


Q ss_pred             HHHHhCC-CCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 004848          545 KIYNDAP-GQQSTVAGIEAQMGVMYYML--GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE  621 (727)
Q Consensus       545 ~~~~~~~-~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  621 (727)
                      +.....+ +....++.-++.++.++..-  ....+..    ++...+....-.+......-+..+|.++..+|+...|..
T Consensus       395 rf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~  470 (546)
T KOG3783|consen  395 RFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPK  470 (546)
T ss_pred             HHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            2111111 00001111122222222211  1222222    222222211111334456677788999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-LDDAIEILEFVVGI  671 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  671 (727)
                      +|..+++..... ..+..-.+.+++.||.+|..+|. ..+|..++.+|.+.
T Consensus       471 ~f~i~~~~e~~~-~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  471 CFKIQVEKESKR-TEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             HHHHHHHHHHhh-ccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            999998763222 22244456699999999999999 99999999999865

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.31  E-value=0.0034  Score=59.11  Aligned_cols=100  Identities=17%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 004848          613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA-----NPDVDDEK  687 (727)
Q Consensus       613 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-----~p~~~~~~  687 (727)
                      ...+++|++.|.-|+-...-... .+...+.++..+|++|..+|+.+....++++|+..+.+.+...     .-+.....
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~-~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKE-KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            44688999999999877554433 3456778999999999999999999999999999888776422     22446788


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          688 RRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       688 ~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                      +.+|.+..+.|++++|. ++|.+++..
T Consensus       169 YLigeL~rrlg~~~eA~-~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAK-RWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCCHHHHH-HHHHHHHcC
Confidence            89999999999999999 999999864

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.31  E-value=0.0072  Score=62.67  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=78.7

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTL-GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD  685 (727)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~  685 (727)
                      |..+...|+...|+.++..|+..        .|... ..+.+||.++..-|-..+|-.++.+++.+.        ...+.
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~--------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl  677 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNL--------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPL  677 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhcc--------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCch
Confidence            44455689999999999999876        34322 256899999999999999999999999874        23345


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          686 EKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       686 ~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++.+|.+|..+.+.+.|+ +.|+.|++++|+
T Consensus       678 ~~~~~g~~~l~l~~i~~a~-~~~~~a~~~~~~  708 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGAL-EAFRQALKLTTK  708 (886)
T ss_pred             HHHhcchhHHHHhhhHHHH-HHHHHHHhcCCC
Confidence            7788999999999999999 999999999998

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.29  E-value=0.033  Score=45.30  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=86.0

Q ss_pred             HHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          349 VGETCRYLAE--AHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (727)
Q Consensus       349 ~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  422 (727)
                      ++.+|..|+.  -.+..|-|++|..-+.+++++..........    -.+.++..|+..+..+|+|++++..-.+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            4455555544  3456689999999999999998776554322    236788889999999999999999999998877


Q ss_pred             HhCCC-C----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          423 IANDQ-D----AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (727)
Q Consensus       423 ~~~~~-~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (727)
                      ...+. +    ...+.+.+..|..+..+|+.++|+..|+.+-++..+..|+
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            65433 2    2344556788999999999999999999999988776554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.26  E-value=0.00064  Score=45.82  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  650 (727)
                      .++..+|.+|...|++++|+++|+++++.        +|+...++..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            46788999999999999999999999999        8999999988875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.25  E-value=0.00066  Score=45.78  Aligned_cols=42  Identities=29%  Similarity=0.499  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (727)
                      .++..+|.+|..+|++++|+..|+++++.        +|++..++..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            36889999999999999999999999987        7888889988875

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.23  E-value=0.0068  Score=57.11  Aligned_cols=100  Identities=12%  Similarity=0.072  Sum_probs=80.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-----CccHHHHH
Q 004848          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY-----HPDTLGVY  645 (727)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~  645 (727)
                      ...+++|+..|.-|+-...-.... +...+.++..+|++|...|+.+....++++|++.+.+.....     .-+...++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            446788888888888765544443 446788999999999999999988888999988888765422     22446688


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          646 SNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      +.+|.++.+.|++++|..+|.+++..
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            99999999999999999999999864

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.21  E-value=0.03  Score=49.66  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch-------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTG  334 (727)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  334 (727)
                      +...|......|+.+.++..+++++.+.....-+..+             ...+.++..++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3344556667788888999999988876432221111             123445677888899999999999999999


Q ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848          335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (727)
Q Consensus       335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (727)
                      +..        +|..-.++..+..+|...|+...|+..|++......+.
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e  129 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE  129 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            999        89999999999999999999999999999998877643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.47  Score=50.87  Aligned_cols=185  Identities=12%  Similarity=0.089  Sum_probs=106.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchh----ccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004848          258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI----EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT  333 (727)
Q Consensus       258 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  333 (727)
                      ..|+|..   |..+|......-.++-|...|-+.-.....    ..+.-+     .--...|.+-..-|+|++|.+.|-.
T Consensus       688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-----s~~~q~aei~~~~g~feeaek~yld  759 (1189)
T KOG2041|consen  688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-----SKEQQRAEISAFYGEFEEAEKLYLD  759 (1189)
T ss_pred             cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-----hHHHHhHhHhhhhcchhHhhhhhhc
Confidence            4577555   666777777777788888877766543210    000000     0123456666677899999888866


Q ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (727)
Q Consensus       334 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~  413 (727)
                      +-..          +.+      ..++.+.|+|-...++++..      ..+.++...-.++..+|..+..+..+++|.+
T Consensus       760 ~drr----------DLA------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~  817 (1189)
T KOG2041|consen  760 ADRR----------DLA------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAEMMEWEEAAK  817 (1189)
T ss_pred             cchh----------hhh------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332          111      12345566665555444321      1222344455679999999999999999999


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (727)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (727)
                      +|.+.-       +.       -++..+++...+|++-..+.+        .    -|.....+-.+|..+...|.-++|
T Consensus       818 yY~~~~-------~~-------e~~~ecly~le~f~~LE~la~--------~----Lpe~s~llp~~a~mf~svGMC~qA  871 (1189)
T KOG2041|consen  818 YYSYCG-------DT-------ENQIECLYRLELFGELEVLAR--------T----LPEDSELLPVMADMFTSVGMCDQA  871 (1189)
T ss_pred             HHHhcc-------ch-------HhHHHHHHHHHhhhhHHHHHH--------h----cCcccchHHHHHHHHHhhchHHHH
Confidence            997652       22       234455556555554332211        1    233444555566666666766666


Q ss_pred             HHHHH
Q 004848          494 KSYCE  498 (727)
Q Consensus       494 ~~~~~  498 (727)
                      .+.|-
T Consensus       872 V~a~L  876 (1189)
T KOG2041|consen  872 VEAYL  876 (1189)
T ss_pred             HHHHH
Confidence            66553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.16  E-value=0.02  Score=52.30  Aligned_cols=125  Identities=16%  Similarity=0.113  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004848          415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK  494 (727)
Q Consensus       415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  494 (727)
                      ++.-+.-...+........++..+|..|...|+++.|++.|.++.+....     .......+..+..+....+++....
T Consensus        19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~   93 (177)
T PF10602_consen   19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVE   93 (177)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            33334444445556677788999999999999999999999998776322     3456778889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      .++.++-.+...   +.+..........-|..+...++|..|...|-.+...+
T Consensus        94 ~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   94 KYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            999999999776   33344444555566777788899999998887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.15  E-value=0.00095  Score=42.05  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.+++++|.+|..+|++++|+ .+|+++++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEAL-EYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHH-HHHHHHHHHCcC
Confidence            467899999999999999999 999999999995

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.08  E-value=0.55  Score=49.90  Aligned_cols=391  Identities=13%  Similarity=0.037  Sum_probs=229.9

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHcCChhHHHH
Q 004848          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC-LHVIAAIYCSLGQYNEAIP  286 (727)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~  286 (727)
                      ..+.......|-.-..|...|..-++.|. .+.+++.|++++..+...         ... +..++.+--..|+.+.-..
T Consensus        66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~S---------vdlW~~Y~~f~~n~~~d~~~lr~  135 (577)
T KOG1258|consen   66 EVYDIFLSKYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPLS---------VDLWLSYLAFLKNNNGDPETLRD  135 (577)
T ss_pred             HHHHHHHhhCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhH---------HHHHHHHHHHHhccCCCHHHHHH
Confidence            34555666788888999999999999996 999999999999876422         222 2233444445677788888


Q ss_pred             HHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHH---
Q 004848          287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET-CRYLAEAHVQ---  362 (727)
Q Consensus       287 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~---  362 (727)
                      .|++|+.....    +...  ...|-..-..-..++++..-...|++.+++         |..... ++..-.-+..   
T Consensus       136 ~fe~A~~~vG~----dF~S--~~lWdkyie~en~qks~k~v~~iyeRilei---------P~~~~~~~f~~f~~~l~~~~  200 (577)
T KOG1258|consen  136 LFERAKSYVGL----DFLS--DPLWDKYIEFENGQKSWKRVANIYERILEI---------PLHQLNRHFDRFKQLLNQNE  200 (577)
T ss_pred             HHHHHHHhccc----chhc--cHHHHHHHHHHhccccHHHHHHHHHHHHhh---------hhhHhHHHHHHHHHHHhcCC
Confidence            88888876522    1111  111333333446677788888888888776         221111 1110000001   


Q ss_pred             ---hcCHHHHHHHHHHHHH---------------HHH-hcCCC-CCHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          363 ---ALQFSEAQKFCQMALD---------------IHK-DNGSP-ASLEEAA-----DRRLMGLICETKGDHEAALEHLVL  417 (727)
Q Consensus       363 ---~g~~~~A~~~~~~al~---------------~~~-~~~~~-~~~~~a~-----~~~~l~~~~~~~g~~~~A~~~~~~  417 (727)
                         ....+++...-.....               ..- ....+ .......     .....-.++...-...+.+..|+.
T Consensus       201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~  280 (577)
T KOG1258|consen  201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEE  280 (577)
T ss_pred             hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Confidence               1122222222111110               000 00000 0000011     000111122222223333333333


Q ss_pred             HHHH--HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004848          418 ASMT--MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS  495 (727)
Q Consensus       418 al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  495 (727)
                      .+..  ....+........|..........|+++...-.|++++--+        ......|...+......|+.+-|..
T Consensus       281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~  352 (577)
T KOG1258|consen  281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANN  352 (577)
T ss_pred             hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHH
Confidence            3211  11122344555667777788888999999999999998763        4566788889999889999999999


Q ss_pred             HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH
Q 004848          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS  575 (727)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  575 (727)
                      .+..+.++..+        ....+...-+.+-...|++..|...+++...-.+..       ..+-.........+|+.+
T Consensus       353 ~~~~~~~i~~k--------~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~  417 (577)
T KOG1258|consen  353 VLARACKIHVK--------KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLE  417 (577)
T ss_pred             HHHhhhhhcCC--------CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchh
Confidence            99999888644        234455666777788899999999999988766332       233344455666778888


Q ss_pred             HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848          576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (727)
Q Consensus       576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (727)
                      .+.. +...+..... +..+.......+...++.. .-.++.+.|...+.+++++        .|+....+..+..+...
T Consensus       418 ~~~~-~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~  487 (577)
T KOG1258|consen  418 DANY-KNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELI  487 (577)
T ss_pred             hhhH-HHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHh
Confidence            7775 2233322211 2223333455666666544 4467899999999999998        77777777777666655


Q ss_pred             cC
Q 004848          655 IG  656 (727)
Q Consensus       655 ~g  656 (727)
                      .+
T Consensus       488 ~~  489 (577)
T KOG1258|consen  488 QP  489 (577)
T ss_pred             CC
Confidence            54

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.08  E-value=0.0078  Score=53.38  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC----ChHHHHHH
Q 004848          599 FGVALNQMGLACVQRYS----------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG----RLDDAIEI  664 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~  664 (727)
                      .+..+++.|.++..+.+          +++|+.-|++|+.+        +|+...+++++|.+|..++    +..+|..+
T Consensus        24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~   95 (186)
T PF06552_consen   24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEY   95 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence            45677777777665533          45566666666666        8999999999999998765    34455555


Q ss_pred             HHHHHHHHH
Q 004848          665 LEFVVGIRE  673 (727)
Q Consensus       665 ~~~al~~~~  673 (727)
                      |++|...++
T Consensus        96 F~kA~~~Fq  104 (186)
T PF06552_consen   96 FEKATEYFQ  104 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.07  E-value=0.00056  Score=42.89  Aligned_cols=34  Identities=29%  Similarity=0.553  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      +|++|+++        +|+...+|++||.+|...|++++|++
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            47899999        99999999999999999999999963

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.02  E-value=0.67  Score=49.78  Aligned_cols=191  Identities=16%  Similarity=0.025  Sum_probs=95.2

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH-----HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChh
Q 004848          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRA-----AKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN  282 (727)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~A-----l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  282 (727)
                      ++......++|. +.+|..+|......-+ ++.|...|-+.     +++.+++.....      --...|.+-.--|+|+
T Consensus       680 edA~qfiEdnPH-prLWrllAe~Al~Kl~-l~tAE~AFVrc~dY~Gik~vkrl~~i~s------~~~q~aei~~~~g~fe  751 (1189)
T KOG2041|consen  680 EDAIQFIEDNPH-PRLWRLLAEYALFKLA-LDTAEHAFVRCGDYAGIKLVKRLRTIHS------KEQQRAEISAFYGEFE  751 (1189)
T ss_pred             HHHHHHHhcCCc-hHHHHHHHHHHHHHHh-hhhHhhhhhhhccccchhHHHHhhhhhh------HHHHhHhHhhhhcchh
Confidence            333444455543 4466666666665554 66666665442     222222210000      0012344444558999


Q ss_pred             HHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 004848          283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ  362 (727)
Q Consensus       283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  362 (727)
                      +|.+.|-.+-...          ..       ..++..+|+|-...++++..      -.+.++.....++..+|..+..
T Consensus       752 eaek~yld~drrD----------LA-------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~  808 (1189)
T KOG2041|consen  752 EAEKLYLDADRRD----------LA-------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAE  808 (1189)
T ss_pred             Hhhhhhhccchhh----------hh-------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHH
Confidence            9998886654321          11       12334455554433333221      0112234456788888888888


Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (727)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (727)
                      ...|++|.++|.+.-..                -.+..+++...+|++-..+.+.          -|+....+-.+|.++
T Consensus       809 ~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la~~----------Lpe~s~llp~~a~mf  862 (1189)
T KOG2041|consen  809 MMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLART----------LPEDSELLPVMADMF  862 (1189)
T ss_pred             HHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHHHh----------cCcccchHHHHHHHH
Confidence            88888888888765322                2344455555555443332221          112222334455556


Q ss_pred             HHcCCHHHHHHHH
Q 004848          443 LSLSRYDEAGFAY  455 (727)
Q Consensus       443 ~~~g~~~~A~~~~  455 (727)
                      ...|.-++|.+.|
T Consensus       863 ~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  863 TSVGMCDQAVEAY  875 (1189)
T ss_pred             HhhchHHHHHHHH
Confidence            6666656655554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.082  Score=50.96  Aligned_cols=154  Identities=19%  Similarity=0.119  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhcc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (727)
                      ....-+..+..+...|+ +.+|...|..++...         ++...+...++.+|...|+.+.|...+...-.-.    
T Consensus       133 ~~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----  198 (304)
T COG3118         133 EEEEALAEAKELIEAED-FGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----  198 (304)
T ss_pred             HHHHHHHHhhhhhhccc-hhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----
Confidence            34455677888899997 999999999999875         3336667889999999999999999998753322    


Q ss_pred             CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (727)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (727)
                       .......+.+...+..-....++....    ++.+..        +|+...+.+.+|..+...|+.+.|.+.+-..+..
T Consensus       199 -~~~~~~~l~a~i~ll~qaa~~~~~~~l----~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         199 -QDKAAHGLQAQIELLEQAAATPEIQDL----QRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             -hhhHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             111111111222222222333333322    222222        6888999999999999999999999999887777


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 004848          380 HKDNGSPASLEEAADRRLMGLICETKG  406 (727)
Q Consensus       380 ~~~~~~~~~~~~a~~~~~l~~~~~~~g  406 (727)
                      .....+.      .+...+-.++...|
T Consensus       266 d~~~~d~------~~Rk~lle~f~~~g  286 (304)
T COG3118         266 DRGFEDG------EARKTLLELFEAFG  286 (304)
T ss_pred             cccccCc------HHHHHHHHHHHhcC
Confidence            6544332      23444444444444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.98  E-value=0.0017  Score=40.80  Aligned_cols=33  Identities=12%  Similarity=0.155  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          684 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       684 ~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.+++.+|.++...|++++|+ ++|+++++++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~-~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAI-EYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCcC
Confidence            357899999999999999999 999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.97  E-value=0.0084  Score=59.75  Aligned_cols=136  Identities=10%  Similarity=0.051  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      +|..+.....+.+..+.|..+|.+|+..        ......+|...|.+... .++.+.|...|+.+++.        .
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f   66 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F   66 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence            4566667777777799999999999631        11233577788888666 56666699999999998        5


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.....|......+...|+.+.|..+|++++...     +........|......-...|+.+... ...+++.+..|.
T Consensus        67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~  139 (280)
T PF05843_consen   67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence            6666777888888999999999999999998642     111113467778888889999999988 888888888765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.89  E-value=0.003  Score=39.72  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      +.+|+.+|.++..+|++++|+.+|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999998

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.88  E-value=0.018  Score=57.36  Aligned_cols=136  Identities=12%  Similarity=0.085  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       394 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                      +|..+.....+.+..+.|..+|.+|+.      .......+|...|.+-+. .++.+.|...|+.+++.        .+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~   68 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence            466667777777789999999999852      333445677888888666 56666699999999988        466


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      ....|......+...++.+.|..+|++++.....      ......+|......-...|+.+....+.+++.+..+.
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            6777888888999999999999999999876321      2224567788888888899999999999999888765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.77  E-value=0.0014  Score=41.12  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 004848          330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (727)
Q Consensus       330 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (727)
                      +|++++++        +|....+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            47889998        89999999999999999999999863

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.77  E-value=0.031  Score=45.08  Aligned_cols=83  Identities=17%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848          360 HVQALQFSEAQKFCQMALDIHKDNGSPA-SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (727)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (727)
                      ....|+|..|++.+.+.++......... ......++..+|.++...|++++|+..+++++.+.+..++......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4578999999999999999987776543 123455688899999999999999999999999999998888777777766


Q ss_pred             HHHH
Q 004848          439 GDTY  442 (727)
Q Consensus       439 a~~~  442 (727)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            6543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.76  E-value=0.81  Score=46.85  Aligned_cols=141  Identities=13%  Similarity=0.088  Sum_probs=86.5

Q ss_pred             CCChHhHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHH--HHHHHHH-
Q 004848          510 GVPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY--DSFKNAI-  585 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~al-  585 (727)
                      +.+....+.-+..-|.-+...|. -++|+.+++.+++..+-..       .+ .+....+ -...|.+|+  ..+.+.+ 
T Consensus       372 DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~-------ec-~n~v~~f-vKq~Y~qaLs~~~~~rLlk  442 (549)
T PF07079_consen  372 DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI-------EC-ENIVFLF-VKQAYKQALSMHAIPRLLK  442 (549)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH-------HH-HHHHHHH-HHHHHHHHHhhhhHHHHHH
Confidence            34455667777788888888887 7889999988887654221       11 0111111 111222222  1222222 


Q ss_pred             --HHHHHhCCCC-chhHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848          586 --SKLRAIGERK-SAFFGVALNQM--GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (727)
Q Consensus       586 --~~~~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (727)
                        ....+.+-.. .......-+.|  |..++.+|+|.++.-+-.-..++        .| ...++..+|.|+....+|++
T Consensus       443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~e  513 (549)
T PF07079_consen  443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQE  513 (549)
T ss_pred             HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHH
Confidence              2223322211 11122334444  45567899999999888887777        77 66799999999999999999


Q ss_pred             HHHHHHHH
Q 004848          661 AIEILEFV  668 (727)
Q Consensus       661 A~~~~~~a  668 (727)
                      |..++...
T Consensus       514 A~~~l~~L  521 (549)
T PF07079_consen  514 AWEYLQKL  521 (549)
T ss_pred             HHHHHHhC
Confidence            99998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.76  E-value=0.032  Score=44.94  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848          401 ICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (727)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (727)
                      .....|+|..|++.+.+............   ....++.++|.++...|++++|+..+++++.+.++..  |......++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al   84 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYAL   84 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHH
Confidence            34678999999999999988776665554   5677788999999999999999999999999998876  233444444


Q ss_pred             HHHHHH
Q 004848          478 VRLADM  483 (727)
Q Consensus       478 ~~la~~  483 (727)
                      ..+..+
T Consensus        85 ~~~~~l   90 (94)
T PF12862_consen   85 SWLANL   90 (94)
T ss_pred             HHHHHH
Confidence            444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.69  E-value=0.0031  Score=39.62  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (727)
                      +.+++.+|.+++..|++++|+.+|++++.+.|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            367899999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.66  E-value=0.0051  Score=39.23  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      ++.+||.+|..+|++++|+.+|++++.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478999999999999999999999987754

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.61  E-value=1.3  Score=47.22  Aligned_cols=388  Identities=11%  Similarity=-0.029  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM-QLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (727)
                      |.....|...|..-.+.|..+.+...|++++.-.     + .   ....|. .++.+-...|+.+.-...|++|+.....
T Consensus        76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p-~---SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~  146 (577)
T KOG1258|consen   76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----P-L---SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL  146 (577)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----h-h---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence            5556677888889999999999999999998764     1 1   111222 2334444567777777777777776322


Q ss_pred             HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (727)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~  420 (727)
                           +-.....|-..-..-..++++..-...|++.+++-......        ++..=.-+. ..+...-+..+++++.
T Consensus       147 -----dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~--------~f~~f~~~l-~~~~~~~l~~~d~~~~  212 (577)
T KOG1258|consen  147 -----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR--------HFDRFKQLL-NQNEEKILLSIDELIQ  212 (577)
T ss_pred             -----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH--------HHHHHHHHH-hcCChhhhcCHHHHHH
Confidence                 11222344444444466777888888888887764322110        110000000 0000011111111111


Q ss_pred             HHHhCCC------ChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848          421 TMIANDQ------DAEVASVD-CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (727)
Q Consensus       421 ~~~~~~~------~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (727)
                      +......      .......+ ..+-.+-...+.++++...+.+.+.+                  .=.++...-...+.
T Consensus       213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k  274 (577)
T KOG1258|consen  213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK  274 (577)
T ss_pred             HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence            1000000      00000000 00000000111122222211111111                  11222233334444


Q ss_pred             HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC
Q 004848          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (727)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (727)
                      +..++..+...-... ....+.....|......-...|+++...-.|++++--+...       ...|...+......|+
T Consensus       275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~  346 (577)
T KOG1258|consen  275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD  346 (577)
T ss_pred             HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence            555555544322111 11223344567777777788999999999999998765443       4678888888888899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004848          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (727)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (727)
                      .+-|...+..+.++...    .   ...+...-+......|++..|...++....-        .|....+-..-+....
T Consensus       347 ~~~~~~~~~~~~~i~~k----~---~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~  411 (577)
T KOG1258|consen  347 VSLANNVLARACKIHVK----K---TPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER  411 (577)
T ss_pred             hhHHHHHHHhhhhhcCC----C---CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence            99999888888876432    1   2234455577788899999999999998876        5777777777777888


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHhhh
Q 004848          654 AIGRLDDAIEILEFVVGIREEKLGTANPDV-DDEKRRLAEL-LKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~-~~~~~~La~~-~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.|+.+.+... ...+...  .-|..++.. ...+...+.. +.-.++.+.|. ..+.++++..|.
T Consensus       412 r~~~~~~~~~~-~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~  473 (577)
T KOG1258|consen  412 RKGNLEDANYK-NELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPD  473 (577)
T ss_pred             HhcchhhhhHH-HHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCc
Confidence            89999988852 2222211  112223332 3344445544 44567888888 889988888775

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.56  E-value=0.0067  Score=38.66  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004848          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (727)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (727)
                      ++..||.+|...|+|++|+.+|++++.+.....
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            578999999999999999999999998776553

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.43  E-value=0.008  Score=37.69  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+++.+|.+|..+|++++|. .+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~-~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEAL-EYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            57899999999999999999 999999999983

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.38  E-value=0.81  Score=48.73  Aligned_cols=220  Identities=15%  Similarity=0.115  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 004848          395 RRLMGLICETKGDHEAALEHLVLAS-----------MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK------  457 (727)
Q Consensus       395 ~~~l~~~~~~~g~~~~A~~~~~~al-----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------  457 (727)
                      |..|+.-....=+++-|.+.|.+..           +..+..+..|..    ..+|.++...|+|.+|.+.|.+      
T Consensus       588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~----iLlA~~~Ay~gKF~EAAklFk~~G~enR  663 (1081)
T KOG1538|consen  588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND----LLLADVFAYQGKFHEAAKLFKRSGHENR  663 (1081)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH----HHHHHHHHhhhhHHHHHHHHHHcCchhh
Confidence            5666666666667777777766552           112223333322    3467788888999998888764      


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (727)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (727)
                      |++++.          -.-.+.++.-+...|..++-..+.++-.+......    .|.      .-|..+...|+.++|+
T Consensus       664 AlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k----ePk------aAAEmLiSaGe~~KAi  723 (1081)
T KOG1538|consen  664 ALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK----EPK------AAAEMLISAGEHVKAI  723 (1081)
T ss_pred             HHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC----CcH------HHHHHhhcccchhhhh
Confidence            333321          12234556666667776666555555444433321    221      2356667778888877


Q ss_pred             HHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 004848          538 KLL------QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV  611 (727)
Q Consensus       538 ~~~------~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  611 (727)
                      ...      +-++++..+...   .-...+..++..+.....+.-|.+.|.+.-+.                ..+..++.
T Consensus       724 ~i~~d~gW~d~lidI~rkld~---~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------------ksiVqlHv  784 (1081)
T KOG1538|consen  724 EICGDHGWVDMLIDIARKLDK---AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------------KSLVQLHV  784 (1081)
T ss_pred             hhhhcccHHHHHHHHHhhcch---hhhhHHHHHHHHHhhccccchHHHHHHHhccH----------------HHHhhhee
Confidence            653      334444333211   11223344455555555555565555543221                12345566


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          612 QRYSINEAVELFEEARSILEQECGPYHPDTL-GVYSNLAGTYDAIGRLDDAIEILEFVV  669 (727)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  669 (727)
                      ..+++.+|..+.++            +|... .+|+-.|+.+....++++|.+.|.+|=
T Consensus       785 e~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  785 ETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             ecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            77888888876665            34433 367777888888888888888877654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.32  Score=47.02  Aligned_cols=161  Identities=14%  Similarity=0.127  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhH
Q 004848          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (727)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (727)
                      -..-+.-....|++.+|...|..++...++.       ..+...++.+|...|+.+.|...+...-.-..       ...
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~  202 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA  202 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH
Confidence            3345566778899999999999999987766       35677899999999999999888765321110       000


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      ...+.....++.+.....+... +++.+..        +|+...+.+.||..|...|+.++|++.+-..+..   -.|  
T Consensus       203 ~~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~--  268 (304)
T COG3118         203 AHGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRG--  268 (304)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccc--
Confidence            1111111122222222222222 2222222        7888899999999999999999999988776654   222  


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                       -....+...|-.++...|.-+.+. ..+++
T Consensus       269 -~~d~~~Rk~lle~f~~~g~~Dp~~-~~~RR  297 (304)
T COG3118         269 -FEDGEARKTLLELFEAFGPADPLV-LAYRR  297 (304)
T ss_pred             -ccCcHHHHHHHHHHHhcCCCCHHH-HHHHH
Confidence             223445666777777777666555 44433

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.19  E-value=0.66  Score=46.76  Aligned_cols=170  Identities=18%  Similarity=0.125  Sum_probs=117.1

Q ss_pred             HHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML----GQLENSLMCYTTGLEVQKQVLGETDP  347 (727)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  347 (727)
                      +......+++..|..++..+....       .    ......++.+|..-    .+..+|+.+|+.+.+.          
T Consensus        48 ~~~~~~~~~~~~a~~~~~~a~~~~-------~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------  106 (292)
T COG0790          48 GAGSAYPPDYAKALKSYEKAAELG-------D----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------  106 (292)
T ss_pred             cccccccccHHHHHHHHHHhhhcC-------C----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------
Confidence            334456778888999998887632       1    13466777777653    4578899988854433          


Q ss_pred             hHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q 004848          348 RVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------DHEAALEHLV  416 (727)
Q Consensus       348 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g-------~~~~A~~~~~  416 (727)
                      ....+.+.||.+|..    ..++.+|..+|.++........       ..+...++.+|..-.       +...|+.+|.
T Consensus       107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~  179 (292)
T COG0790         107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR  179 (292)
T ss_pred             ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence            466788889999887    4489999999999987642211       234677777776642       2336888887


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004848          417 LASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG  488 (727)
Q Consensus       417 ~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  488 (727)
                      ++....        ...+...+|.+|..    ..++.+|..+|.++.+.        ..  ....+.++ ++...|
T Consensus       180 ~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         180 KAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence            775421        45677788877755    34899999999999886        22  67777888 666655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.13  E-value=0.014  Score=36.55  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (727)
                      .+|+.+|.+|...|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999999999999986

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.06  E-value=1.3  Score=44.68  Aligned_cols=166  Identities=17%  Similarity=0.156  Sum_probs=111.4

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      ...+++..|...+..+...       ..+   .....++.+|..    ..+..+|..+|..+...           ....
T Consensus        52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~  110 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAE  110 (292)
T ss_pred             cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHH
Confidence            3556777777777766552       112   556667777665    34577888888854443           2345


Q ss_pred             HHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 004848          519 GLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-------NYSDSYDSFKNAISK  587 (727)
Q Consensus       519 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~  587 (727)
                      ..+.||.+|..    ..++.+|..+|.++...-     .... ......++.+|..-.       +...|...|.++...
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL  184 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence            67779998887    458999999999998763     2211 234567777776642       233677777777664


Q ss_pred             HHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848          588 LRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (727)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (727)
                      .          ...+...+|.+|..    ..++.+|..+|.+|.+.        ..  ....+.++ ++...|
T Consensus       185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence            2          34677888877765    33899999999999886        22  66788888 666666

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=2.7  Score=45.08  Aligned_cols=105  Identities=15%  Similarity=0.212  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCc
Q 004848          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (727)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (727)
                      ..+.+.|..+++..+ |..++++|...+..+...   .-+...+.....++.||..+.+.+.|.+++++|-+..     +
T Consensus       355 ~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~D---~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIISD---NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----R  425 (872)
T ss_pred             HHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccch---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----c
Confidence            456677888888876 999999999999876432   2235568888999999999999999999999998774     3


Q ss_pred             cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (727)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  339 (727)
                      ..+..    ...+-.+....|.-++|+.+..+......
T Consensus       426 ~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  426 QSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             ccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            33332    34455566778888999998888776643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.97  E-value=0.44  Score=49.15  Aligned_cols=171  Identities=13%  Similarity=0.041  Sum_probs=108.3

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHH
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD--MYNRTGKLRESKSYCENALRIY  504 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~  504 (727)
                      ..|....++..++.++..+|++..|.+++++|+-.++...   ++........+..  +...-..               
T Consensus        35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~---~~~F~~~~~~~~~g~~rL~~~~---------------   96 (360)
T PF04910_consen   35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF---HPSFSPFRSNLTSGNCRLDYRR---------------   96 (360)
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HHHhhhhhcccccCccccCCcc---------------
Confidence            4678889999999999999999999999999998876554   3332221111111  1111000               


Q ss_pred             hcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (727)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (727)
                            ..+.....++......+.+.|-+..|+++.+-.+.+.+..  ++   ..++..+-....+.++|+--+..++..
T Consensus        97 ------~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~  165 (360)
T PF04910_consen   97 ------PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESP  165 (360)
T ss_pred             ------ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence                  1123345566677778888899999999998888886542  11   234445555566777777666666654


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHH
Q 004848          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSI---------------NEAVELFEEARSI  629 (727)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~  629 (727)
                      .....+.   .-.......+.++.+++..++.               +.|...+.+|+..
T Consensus       166 ~~~~~~~---~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  166 LAKCYRN---WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             hhhhhhh---hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence            4321000   0000123455667777777777               8999999999987

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.92  E-value=0.007  Score=61.85  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=87.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD  684 (727)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~  684 (727)
                      .-+.-.+.-+.++.|+.+|.+|+++        +|..+..+.+.+.++.+.+++..|+.-+.+|+++        +|...
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~   72 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI   72 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence            3456667778999999999999999        9999988889999999999999999999999986        69999


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+|++-|.+..+.+++.+|+ ..|+....+.|+
T Consensus        73 K~Y~rrg~a~m~l~~~~~A~-~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   73 KAYVRRGTAVMALGEFKKAL-LDLEKVKKLAPN  104 (476)
T ss_pred             heeeeccHHHHhHHHHHHHH-HHHHHhhhcCcC
Confidence            99999999999999999999 999999998886

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=1.8  Score=43.73  Aligned_cols=141  Identities=16%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             HHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004848          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (727)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (727)
                      +...++.+|...-+..+.-........-......+|+.+..+|...|+...-...+...+...  .++.+....+...+.
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~  214 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL  214 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence            445788888887776554321111111113345668888899999999777666666655543  334444556667778


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (727)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  422 (727)
                      |-..|...+.|+.|..+..+..  .|...  .....+..++.+|.+..-+++|..|.++|.+|+...
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  215 LLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            8888999999999988876653  12211  223567788999999999999999999999987643

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.88  E-value=0.005  Score=59.94  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=80.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004848          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (727)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  644 (727)
                      +.-.+..|.+++|++.|..++.+        ++..+..+...+.+++++++...|+.-+..|+++        +|+...-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~  184 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG  184 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence            34445678899999999999886        3446788889999999999999999999999999        8999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          645 YSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      |-..+.+...+|+|++|...+..+.++
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            999999999999999999999999986

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.87  E-value=4.9  Score=46.69  Aligned_cols=102  Identities=15%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc----C---ChhHHHHHHHHhcccchhccCcc
Q 004848          230 ELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL----G---QYNEAIPVLEQSIEIPVIEEGQE  302 (727)
Q Consensus       230 ~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~  302 (727)
                      ++..... |++|+..|++....++..      .+-..+.+.+|.....+    |   .+++|+.-|++.-.-      +.
T Consensus       484 ~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  550 (932)
T PRK13184        484 AFLAEKL-YDQALIFYRRIRESFPGR------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------VG  550 (932)
T ss_pred             HHHhhHH-HHHHHHHHHHHhhcCCCc------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------CC
Confidence            3444432 555555555554443211      22345667777776543    2   356666666654432      33


Q ss_pred             chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004848          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (727)
Q Consensus       303 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (727)
                      .|..    |...|.+|..+|+|++-+++|.-|++.+.+     +|......
T Consensus       551 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  592 (932)
T PRK13184        551 APLE----YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRLR  592 (932)
T ss_pred             CchH----HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHHH
Confidence            3333    888999999999999999999999998755     66655443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.86  E-value=2.9  Score=43.96  Aligned_cols=213  Identities=16%  Similarity=0.133  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHhCCC
Q 004848          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~  552 (727)
                      .+...+.++...|+...|...-.++..+++....+. .......++.++..-...-   +++.-..++++++.+....+ 
T Consensus       288 yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-  365 (656)
T KOG1914|consen  288 YLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-  365 (656)
T ss_pred             HHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-
Confidence            334455566666665555444444444433321000 1112233333333222222   25566667777776654332 


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                           ..++..+-..-.+..-...|...|.+|-+.-+    .  .+...+...+- -|...++..-|...|+-.++.   
T Consensus       366 -----tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r----~--~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkk---  430 (656)
T KOG1914|consen  366 -----TLVYCQYMNFIRRAEGLKAARKIFKKAREDKR----T--RHHVFVAAALM-EYYCSKDKETAFRIFELGLKK---  430 (656)
T ss_pred             -----ceehhHHHHHHHHhhhHHHHHHHHHHHhhccC----C--cchhhHHHHHH-HHHhcCChhHHHHHHHHHHHh---
Confidence                 12344444555555556777778877765311    1  11112222222 245578999999999999988   


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                           +++....-......+...++-..|..+|++++..   .+  ........|...-..-..-|+....+ +.-++-.
T Consensus       431 -----f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~l--~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~  499 (656)
T KOG1914|consen  431 -----FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS---VL--SADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRF  499 (656)
T ss_pred             -----cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc---cC--ChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHH
Confidence                 5555555566667788899999999999999864   11  12234456666666666778877776 5555544


Q ss_pred             HHhh
Q 004848          713 DANS  716 (727)
Q Consensus       713 ~~~p  716 (727)
                      ...|
T Consensus       500 ~af~  503 (656)
T KOG1914|consen  500 TAFP  503 (656)
T ss_pred             Hhcc
Confidence            4444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.85  E-value=0.39  Score=49.54  Aligned_cols=162  Identities=15%  Similarity=0.006  Sum_probs=117.8

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----c-----C---C--------CCCHHHHHHHH
Q 004848          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIG----A-----N---G--------KPSLELVMCLH  269 (727)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~----~-----~---~--------~~~~~~~~~~~  269 (727)
                      +......+|-..+.|+.++.++...|+ +..|-++.++|+-.+++.    .     .   +        ..+.....+++
T Consensus        29 l~~ll~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~  107 (360)
T PF04910_consen   29 LINLLQKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF  107 (360)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence            344557789999999999999999997 999999999999888743    1     1   0        01245566778


Q ss_pred             HHHHHHHHcCChhHHHHHHHHhcccchhccCcc-chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (727)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (727)
                      .....+.+.|-+..|.++.+-.+.+.     +. +|..   +++.+-....+.++|+--+..++.......+.   ....
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~  176 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSL  176 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhh
Confidence            88888999999999999999999986     33 5432   35556666667788877777777655421000   0011


Q ss_pred             HHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHHhc
Q 004848          349 VGETCRYLAEAHVQALQF---------------SEAQKFCQMALDIHKDN  383 (727)
Q Consensus       349 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~  383 (727)
                      .+...+.++.+++..++-               +.|...+.+|+...|..
T Consensus       177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            234566777788888887               89999999999988754

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.85  E-value=0.0029  Score=61.53  Aligned_cols=93  Identities=18%  Similarity=0.237  Sum_probs=85.0

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848          608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK  687 (727)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~  687 (727)
                      .-.+..|.+++|+++|..++++        +|..+..|...+.++.++++...|+.-+..++++        +|+.+..|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~y  185 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGY  185 (377)
T ss_pred             HHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccccccc
Confidence            3345678899999999999999        9999999999999999999999999999999987        78999999


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          688 RRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ...+.....+|+|++|. +.|+.+.+++-.
T Consensus       186 kfrg~A~rllg~~e~aa-~dl~~a~kld~d  214 (377)
T KOG1308|consen  186 KFRGYAERLLGNWEEAA-HDLALACKLDYD  214 (377)
T ss_pred             chhhHHHHHhhchHHHH-HHHHHHHhcccc
Confidence            99999999999999999 999999988755

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.78  E-value=0.012  Score=60.21  Aligned_cols=109  Identities=18%  Similarity=0.170  Sum_probs=92.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccH
Q 004848          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (727)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  641 (727)
                      -.-+.-.+.-+.|+.|+..|.+|+++        .+..+..+.+.+.++++.+++..|+.-+.+|++.        +|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            34566777889999999999999997        3445667778889999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          642 LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       642 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      ..+|+..|.++...+.+.+|+..|+....+        .|+...+...+.++-
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECN  116 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHH
Confidence            999999999999999999999999998876        466666666666553

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.76  E-value=2.8  Score=42.99  Aligned_cols=436  Identities=9%  Similarity=-0.048  Sum_probs=218.4

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004848          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (727)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  289 (727)
                      +.+...++|.+...|+.+...+-..|. +++-.+.|++...-         -|-...+|...-.--....+|.....+|-
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~p---------fp~~~~aw~ly~s~ELA~~df~svE~lf~  100 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQES-MDAEREMYEQLSSP---------FPIMEHAWRLYMSGELARKDFRSVESLFG  100 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCC---------CccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence            445677899999999999999988887 88877877776542         23333333332223334578888888888


Q ss_pred             HhcccchhccCccchHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH-----
Q 004848          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ-L--ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-----  361 (727)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----  361 (727)
                      +++.-.-          .+..|... .-|.+.-+ .  -++.....+|.+......+ -+|.....|...+..+.     
T Consensus       101 rCL~k~l----------~ldLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~  168 (660)
T COG5107         101 RCLKKSL----------NLDLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEEL  168 (660)
T ss_pred             HHHhhhc----------cHhHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhcccc
Confidence            8876531          11112211 11222111 0  0333333333333222100 13444444444444332     


Q ss_pred             ----HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------HHHHHHcC----CHHHHHHHHHHHHHHHHh
Q 004848          362 ----QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM---------GLICETKG----DHEAALEHLVLASMTMIA  424 (727)
Q Consensus       362 ----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l---------~~~~~~~g----~~~~A~~~~~~al~~~~~  424 (727)
                          .+.+.+.-...|.+++..--.+.     .  ..|...         +..---.|    -|-.|...|++...+...
T Consensus       169 ~kwEeQqrid~iR~~Y~ral~tP~~nl-----e--klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G  241 (660)
T COG5107         169 GKWEEQQRIDKIRNGYMRALQTPMGNL-----E--KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG  241 (660)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCccccH-----H--HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc
Confidence                33345555666666664321110     0  001110         00001111    244555555554433221


Q ss_pred             CCC-ChhHHHH-----------HHHHHHHHH-----HcCC-HHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          425 NDQ-DAEVASV-----------DCSIGDTYL-----SLSR-YDEAG-FAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (727)
Q Consensus       425 ~~~-~~~~~~~-----------~~~la~~~~-----~~g~-~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (727)
                      ... +|.....           |.+.-..-.     ..|+ ..+-+ -.+++++..        -+....+|+.....+.
T Consensus       242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--------~~~~~evw~dys~Y~~  313 (660)
T COG5107         242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--------FYYAEEVWFDYSEYLI  313 (660)
T ss_pred             ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHh
Confidence            110 1111111           111111110     0111 11211 224445544        4666677777777777


Q ss_pred             HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC------------CC
Q 004848          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP------------GQ  553 (727)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~  553 (727)
                      ..++-+.|+...++++...         |.   ....++.+|....+-+.-..+|+++.+......            +.
T Consensus       314 ~isd~q~al~tv~rg~~~s---------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N  381 (660)
T COG5107         314 GISDKQKALKTVERGIEMS---------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNN  381 (660)
T ss_pred             hccHHHHHHHHHHhcccCC---------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCC
Confidence            8888888888777766552         11   345677777777776666666666655432210            00


Q ss_pred             Ccc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HHHHHhCCHHHHHH
Q 004848          554 QST-----------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG-LACVQRYSINEAVE  621 (727)
Q Consensus       554 ~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~  621 (727)
                      ...           +..+++.+-..-.+..-.+.|..+|-++-+    .+-..+    .+|..-| .-+...|++.-|..
T Consensus       382 ~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk----~~~~~h----~vyi~~A~~E~~~~~d~~ta~~  453 (660)
T COG5107         382 FEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK----EGIVGH----HVYIYCAFIEYYATGDRATAYN  453 (660)
T ss_pred             ccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc----cCCCCc----ceeeeHHHHHHHhcCCcchHHH
Confidence            100           011111122222223334455555555433    221111    1222222 23456789999999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChh
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR  701 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~  701 (727)
                      .|+-.+..        +|+........-..+...++-..|..+|+.++...+.      ......|..+...-..-|+..
T Consensus       454 ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~iy~kmi~YEs~~G~lN  519 (660)
T COG5107         454 IFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKRIYDKMIEYESMVGSLN  519 (660)
T ss_pred             HHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHhhcchH
Confidence            99998887        6666544455556677889999999999998865432      133445555555556667776


Q ss_pred             HHHHHHHHHHHHHhhh
Q 004848          702 SRKAQSLETLLDANSR  717 (727)
Q Consensus       702 ~A~~~~l~~al~~~p~  717 (727)
                      .+. ..=+...++.|+
T Consensus       520 ~v~-sLe~rf~e~~pQ  534 (660)
T COG5107         520 NVY-SLEERFRELVPQ  534 (660)
T ss_pred             HHH-hHHHHHHHHcCc
Confidence            666 555555555554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.71  E-value=0.018  Score=35.62  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ++++.+|.++...|++++|+ ..|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence            46889999999999999999 999999999885

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.65  E-value=2.4  Score=41.38  Aligned_cols=221  Identities=13%  Similarity=-0.019  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHH-HHHHHHHHHcCChhHHHHHHHHhcccchhccCc
Q 004848          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE-LVMCL-HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (727)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (727)
                      -+.+.++++..|+ +..|+..|++=+..+........... ....+ ..++.-      |.---++++++..........
T Consensus        13 ~~ki~rl~l~~~~-~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq------~~~fAeL~~~~~~~~l~~~~~   85 (247)
T PF11817_consen   13 AFKICRLYLWLNQ-PTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQ------YQVFAELLEEAPISGLTPPST   85 (247)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHH------HHHHHHHHHhcccccCCCCCC
Confidence            3677888999997 99999999998888877754322111 11111 222222      333334555554322111122


Q ss_pred             cchHHHHHHHHHHHHHHHHhCCHHHHHHHH---H--HHHHHHHHHhCC----CCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 004848          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCY---T--TGLEVQKQVLGE----TDPRVGETCRYLAEAHVQALQFSEAQKF  372 (727)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---~--~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~  372 (727)
                      .+|-    .|+..+..+... +...|....   .  .+-.+....++.    ..+.....+............-...+.+
T Consensus        86 ~~pG----~yy~~AA~~~~~-Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~l  160 (247)
T PF11817_consen   86 QHPG----FYYQIAAKHAVE-RRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIEL  160 (247)
T ss_pred             CCcc----hHHHHHHHHHHH-HHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHH
Confidence            2221    144444333321 111111111   0  000000000000    0111111222221111222344567888


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 004848          373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (727)
Q Consensus       373 ~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (727)
                      +.+|+..+.....  ..........+|..|+..|++++|+.+|+.+...++..+-......++..+..|+...|+.+..+
T Consensus       161 L~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l  238 (247)
T PF11817_consen  161 LEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL  238 (247)
T ss_pred             HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            8888888876654  23344567789999999999999999999998888888888888889999999999999999888


Q ss_pred             HHHHHH
Q 004848          453 FAYQKA  458 (727)
Q Consensus       453 ~~~~~a  458 (727)
                      .+.-+.
T Consensus       239 ~~~leL  244 (247)
T PF11817_consen  239 TTSLEL  244 (247)
T ss_pred             HHHHHH
Confidence            775544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=2.7  Score=42.50  Aligned_cols=151  Identities=11%  Similarity=0.046  Sum_probs=100.3

Q ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc
Q 004848          225 LKQAREL-ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (727)
Q Consensus       225 ~~~a~~~-~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (727)
                      ..++..+ +...+ +.+|..+-...+.-........-+.-.+.+|+.+..+|-..|+...-...+...+....-  + .+
T Consensus       129 ~lLv~Lfl~d~K~-~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--r-hd  204 (493)
T KOG2581|consen  129 YLLVLLFLIDQKE-YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL--R-HD  204 (493)
T ss_pred             HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--c-Cc
Confidence            3344333 33444 888888877665543222111222345677888888899999988777777766655321  1 11


Q ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (727)
Q Consensus       304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (727)
                      ........+.|-+.|...+.|+.|.....+..--.    ...+...+..++++|.+..-+++|..|.+++.+|+...|..
T Consensus       205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            22334456677888899999999888776654110    01123677888999999999999999999999999988863

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=95.56  E-value=2.4  Score=40.84  Aligned_cols=185  Identities=17%  Similarity=0.157  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhCCCCCc
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYNDAPGQQS  555 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (727)
                      +..+|.+....|+|++.+.++++++......        ...-.+.++.+|- ..|....+...+.......... +...
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL--------t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~   74 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL--------TEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK   74 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence            5678999999999999999999999882221        1222333444442 2344444555444443333222 1111


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHHHHH-----hC-----CHHHHHHH
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE---RKSAFFGVALNQMGLACVQ-----RY-----SINEAVEL  622 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~-----~g-----~~~~A~~~  622 (727)
                      ..     .+..-|. ..=-++=......++.+.....-   .........+-..|..|.-     .|     -.+.|...
T Consensus        75 ~~-----~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a  148 (236)
T PF00244_consen   75 QV-----KLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA  148 (236)
T ss_dssp             HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence            11     0111110 00112223344445554443211   1111122223333444431     11     24789999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhc
Q 004848          623 FEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      |++|+.++.....+.+|-......+.+..|. -+|+.++|+...++++.-....+
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l  203 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL  203 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence            9999999999888889999888888888774 48999999999999987665443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.45  E-value=4.6  Score=43.39  Aligned_cols=106  Identities=17%  Similarity=0.096  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Q 004848          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (727)
Q Consensus       266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (727)
                      ..+.+-|.-.++..+|..++++|...+....   .+............++.||..+.+.+.|.+++++|-+.        
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------  423 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------  423 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence            3456668888999999999999999887642   12222333566889999999999999999999999888        


Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (727)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (727)
                      +|.........-.+....+.-++|+.+..........
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            6777777777777778889999999998887766543

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=95.45  E-value=5.5  Score=44.25  Aligned_cols=437  Identities=11%  Similarity=-0.013  Sum_probs=205.2

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCChhHHHHH
Q 004848          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY-CSLGQYNEAIPV  287 (727)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~  287 (727)
                      .+.+....++.....+..+...+...|+ +++-...-.+    +..+....  |..+.-|.. ..++ -..+.-.++...
T Consensus       101 t~~ee~ai~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~----~~~~~pl~--~~lWl~Wl~-d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen  101 TLEEELAINSYKYAQMVQLIGLLRKLGD-LEKLRQARLE----MSEIAPLP--PHLWLEWLK-DELSMTQSEERKEVEEL  172 (881)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHhcc-hHHHHHHHHH----HHHhcCCC--hHHHHHHHH-HHHhhccCcchhHHHHH
Confidence            3344445566666677777888888887 6554333333    33332222  333332322 2222 234777888999


Q ss_pred             HHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH
Q 004848          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS  367 (727)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  367 (727)
                      |++++.-...   .......+......+..+...++++.-...|.+++...-.... ........+..+-..|...-..+
T Consensus       173 ~ekal~dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~  248 (881)
T KOG0128|consen  173 FEKALGDYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQR  248 (881)
T ss_pred             HHHHhccccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHH
Confidence            9999865311   0000111112233334455667888889999999887533222 12345556666666666666666


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--H-HHHHcCCHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHH
Q 004848          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMG--L-ICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYL  443 (727)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~--~-~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~  443 (727)
                      +-+.++...+...-..     -.....|....  . ......+++.|+.-+.+.+..+.. ....+.....|..+-....
T Consensus       249 qv~a~~~~el~~~~D~-----~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~  323 (881)
T KOG0128|consen  249 QVIALFVRELKQPLDE-----DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEK  323 (881)
T ss_pred             HHHHHHHHHHhccchh-----hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            7777777766654111     00111122221  1 112233455554444333322211 1112333334444445555


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (727)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (727)
                      ..|+.-.-...+++++.-        .+.....|...+...- .++-.+.+...+-+++..         .+..... ..
T Consensus       324 ~~G~p~ri~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~---------cp~tgdL-~~  385 (881)
T KOG0128|consen  324 KSGDPVRIQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS---------CPWTGDL-WK  385 (881)
T ss_pred             hcCCchHHHHHHHHHHHh--------ccccHHHHhhhhhhcccccccccccccccchhhcC---------CchHHHH-HH
Confidence            566655555555555443        1222233333322211 111122222222222222         1111111 11


Q ss_pred             HHHHHHhccc--HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhCC
Q 004848          523 VSSIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM-------LGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       523 la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      .+.+.+..++  ...-...+.+++...-           .+++....|++       ..+++.-.+.|+.|...+.....
T Consensus       386 rallAleR~re~~~vI~~~l~~~ls~~~-----------~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~  454 (881)
T KOG0128|consen  386 RALLALERNREEITVIVQNLEKDLSMTV-----------ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYG  454 (881)
T ss_pred             HHHHHHHhcCcchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence            1111111111  1111122222222100           01111111111       12344445556666665555433


Q ss_pred             CCchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          594 RKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      .........+...|.++.. +++.+.|+.++...+..       ........|+....+-...|+...|..++++|+.- 
T Consensus       455 ~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~-  526 (881)
T KOG0128|consen  455 DQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ-  526 (881)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc-
Confidence            3222234555556665553 45677777777665543       12334446777777777889999999988888754 


Q ss_pred             HHhcCCCChh-HHHHHHHHHHHHHHhCChhHHH
Q 004848          673 EEKLGTANPD-VDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       673 ~~~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~  704 (727)
                           ...|+ ...++..+-.+....|.++...
T Consensus       527 -----~~~~~~~~ev~~~~~r~Ere~gtl~~~~  554 (881)
T KOG0128|consen  527 -----VVDPEDALEVLEFFRRFEREYGTLESFD  554 (881)
T ss_pred             -----CcCchhHHHHHHHHHHHHhccccHHHHh
Confidence                 23443 4556666666666777777666

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.36  E-value=3  Score=40.67  Aligned_cols=187  Identities=14%  Similarity=0.035  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC---CC-------HHHHHHHHHHHHHHHHcC--------------C
Q 004848          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP---AS-------LEEAADRRLMGLICETKG--------------D  407 (727)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~a~~~~~l~~~~~~~g--------------~  407 (727)
                      +.+.+..+++..|+..+|+.-+++=+....+..+.   ..       ...+.-+..+|.+.....              -
T Consensus        12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y   91 (247)
T PF11817_consen   12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY   91 (247)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence            34556788889999999999998888877655443   11       223333445555554432              1


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChh----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          408 HEAALEHLVLASMTMIANDQDAE----------------------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (727)
Q Consensus       408 ~~~A~~~~~~al~~~~~~~~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (727)
                      |..|-.+...-...+......|.                      ....+................+.++.+|+..++..
T Consensus        92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~  171 (247)
T PF11817_consen   92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY  171 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence            23333333222222222210000                      00111111111112234456788888998888776


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (727)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (727)
                      ..  ......+...+|..|+..|++++|+.+|+.+...+++.   .-......++..+..++...|+.+..+.+.-+.
T Consensus       172 ~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  172 GQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             cc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            52  44556677899999999999999999999998888763   334456778888999999999988877665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=3.9  Score=41.83  Aligned_cols=197  Identities=12%  Similarity=-0.012  Sum_probs=138.0

Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      .....+..+..+.++....++..|..++.+..-..... ........++..++.++.+.+..-.+..+.-.++....+..
T Consensus       269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~-~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~  347 (482)
T KOG4322|consen  269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG-CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS  347 (482)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence            44456777889999999999999999998877554332 23335566777888888888888888887777777665543


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH------HHcCChHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY------DAIGRLDDAIEILE  666 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~  666 (727)
                      -.  ...+.+-..++..+...|..+.|+..+..++.......+-+  +.+.+++-.+.|+      ....+.+.+..+++
T Consensus       348 ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~--drara~fvfanC~lA~a~s~~~e~ld~~~~~L~  423 (482)
T KOG4322|consen  348 LD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD--DRARAIFVFANCTLAFALSCANESLDGFPRYLD  423 (482)
T ss_pred             cc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh--hcceeEEEEEeeeecchhhhhhhhHHhhHHHHH
Confidence            32  22345566788888899999999999999998866554421  1122222222222      14557788888889


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHH--HHHHHHHHHhh
Q 004848          667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA--QSLETLLDANS  716 (727)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~--~~l~~al~~~p  716 (727)
                      +|-.++.++  ..|....++.+-++..|...|+.++-..  -.|++++.--|
T Consensus       424 ~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le  473 (482)
T KOG4322|consen  424 LAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLE  473 (482)
T ss_pred             HHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Confidence            888888776  5577788999999999999999875430  44555555443

>PRK14707 hypothetical protein; Provisional

Probab=95.29  E-value=6  Score=48.69  Aligned_cols=366  Identities=9%  Similarity=0.003  Sum_probs=190.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (727)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (727)
                      ..+++++..+.+|.++..+-..+..+...+..+  +....+  -..++.++-..++|.+...+-.-++.+..........
T Consensus       835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e--~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~L  912 (2710)
T PRK14707        835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLADE--PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPEL  912 (2710)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC--hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHH
Confidence            467888888888887777777776666554322  222222  2445667777777777666666666666555433333


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004848          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (727)
                      ..+..-..++.++..+.+|.++-.+-.-+..+......++.....+  ..++.++..+++|.+.-.+-.-+..+...+-.
T Consensus       913 rqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~  992 (2710)
T PRK14707        913 RKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD  992 (2710)
T ss_pred             HhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence            3333445567777777777665544444444444444444433332  34667777788887766665555555544321


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH--HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI--ASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                      +..-.....-..++.++..+.++.++-.+-.-+..+...+. .  .+..  ..--..++.++....++.+.-.+-.-+..
T Consensus       993 ~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa-~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~a 1069 (2710)
T PRK14707        993 EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS-N--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASA 1069 (2710)
T ss_pred             cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-c--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHH
Confidence            11111222334567777777777766655555555554431 1  1111  11223455666666665544333333333


Q ss_pred             HHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004848          546 IYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE  624 (727)
Q Consensus       546 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  624 (727)
                      +......... ..+..-..++.++...-+|.+.-.+-.-++.+...++.........-...++.+.-...++.....+=.
T Consensus      1070 LA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~ 1149 (2710)
T PRK14707       1070 LAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACES 1149 (2710)
T ss_pred             HHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHH
Confidence            3332211111 001112356667777778888777777788877777655444333333344444444444333222222


Q ss_pred             HHHHHHHHhcCCCCccHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          625 EARSILEQECGPYHPDTLG--VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD  684 (727)
Q Consensus       625 ~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~  684 (727)
                      -+..+..++..  +++...  .-..++..+-...+|.+.-.+-+-++.+........+|...
T Consensus      1150 Aa~~LA~RL~~--d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~ 1209 (2710)
T PRK14707       1150 AIDVLAATLAN--APGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQ 1209 (2710)
T ss_pred             HHHHHHHHhcc--chhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchh
Confidence            22333333222  222211  12345555666666666666656566665555445555443

>PRK14707 hypothetical protein; Provisional

Probab=95.17  E-value=12  Score=46.48  Aligned_cols=360  Identities=9%  Similarity=0.022  Sum_probs=186.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC--RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (727)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (727)
                      ..++.++-.+.+|.+...+-.-+..+...+..  ++.....+  ..++.++-...+|..+..+-..+..+..........
T Consensus       793 Q~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~--dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~L  870 (2710)
T PRK14707        793 REMTNALNALSKWPDTPACAAAASALAARVAD--DPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPEL  870 (2710)
T ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHhc--ChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhh
Confidence            34666677777777766666666666655432  23333332  456677777777776666666665555444332222


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004848          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD--CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (727)
                      ..+..-..++.++..++++.+...+-.-+..+......++.....+  ..++.++-.+.+|.++-.+-.-+..+...+..
T Consensus       871 R~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~  950 (2710)
T PRK14707        871 RHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSD  950 (2710)
T ss_pred             hhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc
Confidence            2222234466677777777766666555555555444444443332  45677777777777765555555555554432


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      +..-.....-..++.++..++++.+.-.+-.-+..+...+.. +..-.....-..+++++..+.++.++-.+-.-+..+.
T Consensus       951 d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~-~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA 1029 (2710)
T PRK14707        951 DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD-EPALRNALDPIGMANALNALSKWLQMPVCAATVEALA 1029 (2710)
T ss_pred             ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc-cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence            211122333345677788888887766666666555444211 0000111223345666666666655544444455544


Q ss_pred             HhCCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          548 NDAPGQQST-VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       548 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                      ......... .+.--..++.++-...+|.+.-.+-.-+..+...+.....-..+..-..++.++-..-++-+.-.+-+.+
T Consensus      1030 ~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707       1030 ARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred             HHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence            443222110 1111235667777777777666555555555444333221111222233444555555666666666666


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (727)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (727)
                      +.+...+....++....-...++.++....+|...-.+-.-+..+..+
T Consensus      1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~R 1157 (2710)
T PRK14707       1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAAT 1157 (2710)
T ss_pred             HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            666666554333333333445555555555554443333333333333

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.99  E-value=0.11  Score=39.04  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  295 (727)
                      .+...+..|.-++...+ .++|+..+.+|++...      ..++...++-.+..+|+..|+|.+++.+.-+-+.+.
T Consensus         5 ~ak~~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A   73 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNE-TQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA   73 (80)
T ss_pred             HHHHHHHHHHHHhccch-HHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788888898886 8999999999998642      236778888999999999999999999887766664

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.96  E-value=0.034  Score=34.37  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (727)
                      ++++.+|.++...|++++|+..|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            46889999999999999999999999988764

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.95  E-value=2.9  Score=42.57  Aligned_cols=148  Identities=8%  Similarity=-0.002  Sum_probs=100.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004848          426 DQDAEVASVDCSIGDTYLSLSR------------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (727)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (727)
                      ..+|....+|..+....-..-.            .+.-+.+|++|++.        +|.....+..+-.+..+..+.++.
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3566666677666655443322            34556677777776        677777777777777788888888


Q ss_pred             HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC-----------ccHHHHHH
Q 004848          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----------STVAGIEA  562 (727)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~  562 (727)
                      ..-+++++...      ...+.+...|...-......-.+......|.+++..........           ..+..++.
T Consensus        85 ~~~we~~l~~~------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~  158 (321)
T PF08424_consen   85 AKKWEELLFKN------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL  158 (321)
T ss_pred             HHHHHHHHHHC------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            88888888872      22333444444333333444568889999999998776543321           24556677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          563 QMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      .+.......|..+.|+..++-.+++
T Consensus       159 r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  159 RLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHCCchHHHHHHHHHHHHH
Confidence            8888889999999999999998886

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.85  E-value=3  Score=40.15  Aligned_cols=133  Identities=14%  Similarity=0.089  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004848          409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG  488 (727)
Q Consensus       409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  488 (727)
                      ++-++-+.+.++-....+-......++.++|..|.+.++.+.+.+++.+.+......+-  ..+...+-..||.+|..+.
T Consensus        92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~--KiDv~l~kiRlg~~y~d~~  169 (412)
T COG5187          92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL--KIDVFLCKIRLGLIYGDRK  169 (412)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc--chhhHHHHHHHHHhhccHH
Confidence            34444454444443333334556677788888888888888888877777665443321  2334445555666665544


Q ss_pred             ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       489 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      -.++.++.....++.      |.+....-..-...|.......++.+|-.++-.++..+..
T Consensus       170 vV~e~lE~~~~~iEk------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         170 VVEESLEVADDIIEK------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHHHHHHHHHHh------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            444444443333333      3333333333344455556666777777777666655443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.80  E-value=3.4  Score=43.80  Aligned_cols=178  Identities=16%  Similarity=0.059  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhc
Q 004848          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRY-------DEAGFAYQKALTAFKTNK  466 (727)
Q Consensus       394 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~  466 (727)
                      ....||.+++..++|+.|...|+.+..-+.........+.++-..|.+++..+..       +....+++.|+..+....
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            4778999999999999999999988776655555555666777777777777643       467778888888777732


Q ss_pred             CC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-hcCCCCCChHhHHHHHHHHHHHH--HhcccHHHHHHHH
Q 004848          467 GE---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY-EKPVPGVPPEEIASGLTDVSSIY--ESMNELEQAIKLL  540 (727)
Q Consensus       467 ~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~  540 (727)
                      .+   .......+....+.++...|.+.+|...+-+..... .+..   ..-..+..+-.+|.+|  ....         
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l---~~~~~alllE~~a~~~~~~~~~---------  357 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL---RPFGSALLLEQAAYCYASLRSN---------  357 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh---hhHhhHHHHHHHHHhhcccccC---------
Confidence            11   123556677788888888999888877776665552 1100   0001233444444444  1110         


Q ss_pred             HHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004848          541 QKALKIYNDAPGQ--QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (727)
Q Consensus       541 ~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (727)
                             ...++.  ....+.-+..-|.-|.+.|+...|..+|.+++.++..
T Consensus       358 -------~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  358 -------RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             -------CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence                   000000  0111222334578899999999999999999988653

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.65  E-value=6  Score=40.50  Aligned_cols=194  Identities=14%  Similarity=0.108  Sum_probs=138.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      -.......+..+.++....++..|...+++.+-.+.+   +........++..++.++.+-+..-.+..+.-.++.....
T Consensus       269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            4455677778999999999999999999998776655   4445667788888899888888777777777776666554


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-----FFGVALNQMGLACVQRYSINEAVELFE  624 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~  624 (727)
                      . ..+...+..-..++..+...|..+.|...+..++......+.-...     ..+.++...+..+ ...+.+.+.++++
T Consensus       346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~  423 (482)
T KOG4322|consen  346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD  423 (482)
T ss_pred             h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence            4 3333444555678888999999999999999999876544332211     0111222222222 4557788889999


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChH---HHHHHHHHHHH
Q 004848          625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD---DAIEILEFVVG  670 (727)
Q Consensus       625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~  670 (727)
                      +|-.++.+..-  +....++.+.+|..|-..|+.+   ++...|+++..
T Consensus       424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            99888888755  6678889999999999999865   45555666554

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.57  E-value=3.9  Score=43.36  Aligned_cols=180  Identities=11%  Similarity=0.022  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHH
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-------EQAIKLLQKALKIY  547 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  547 (727)
                      .....||++++.+++|+-|...|+.+.+-+..   .......+.++-..|.++...+..       +....+++.|+..+
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~---Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y  285 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN---DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY  285 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh---chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence            45567899999999999999999999887643   222333455555566666665533       46777888888877


Q ss_pred             HhC----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH--HHhCCHHHHHH
Q 004848          548 NDA----PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC--VQRYSINEAVE  621 (727)
Q Consensus       548 ~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~  621 (727)
                      ...    .........+....+.++...|.+.+|...+-+.....- ..+..+...+.++..+|.++  ........-..
T Consensus       286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l-~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~  364 (414)
T PF12739_consen  286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL-ESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT  364 (414)
T ss_pred             HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-hhhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence            762    122223344566678888888998888777766655421 00000011344555555555  11100000000


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      -               ....+--+..-|.-|...|+...|+.+|.+++.++.
T Consensus       365 r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  365 R---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             h---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence            0               011222233446678999999999999999998875

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.48  E-value=5.3  Score=39.18  Aligned_cols=219  Identities=15%  Similarity=0.124  Sum_probs=117.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004848          404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM  483 (727)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  483 (727)
                      ..++|++|++.+...                    +..+.+.|++.-|.++..-.++.+.+..   .+........++.+
T Consensus         2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l   58 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL   58 (260)
T ss_dssp             HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence            356777777766544                    4556677777777777766677666643   22233344566666


Q ss_pred             HHHcCChH-HHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH-----------HHHHHhCC
Q 004848          484 YNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA-----------LKIYNDAP  551 (727)
Q Consensus       484 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~  551 (727)
                      +...+.-+ +-..+..++++..+.   +.........+..+|..|.+.|++.+|..+|-..           +...... 
T Consensus        59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-  134 (260)
T PF04190_consen   59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-  134 (260)
T ss_dssp             HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred             HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence            66655433 455667777777622   3334455778999999999999999999887421           1111111 


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----CC------CCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI----GE------RKSAFFGVALNQMGLACVQRYSINEAVE  621 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~  621 (727)
                      +.+.............|...++...|...+..-.+.+...    ..      ...+..-.++.  -..-++.++    ..
T Consensus       135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l--Ll~t~e~~~----~~  208 (260)
T PF04190_consen  135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL--LLLTCERDN----LP  208 (260)
T ss_dssp             TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH--HHHHHHHT-----HH
T ss_pred             cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH--HHHHHhcCc----HH
Confidence            3333333333444556778899999998888777653322    11      11121111221  122233333    35


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (727)
                      .|....+.++..... +|.....+..+|..|+...
T Consensus       209 ~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  209 LFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCC
Confidence            566555554443322 4666777888888887654

; PDB: 3LKU_E 2WPV_G.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.37  E-value=5.2  Score=38.57  Aligned_cols=183  Identities=14%  Similarity=0.109  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      +..+|.+....|+|++.+.++.+++..       +......-...+..+|-. .|....+...+..........    ..
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~----~~   72 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK----GN   72 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc----ch
Confidence            456788888899999999998888876       122223333344444422 344444544444433332221    00


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC----CccHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYML-----G-----NYSDSYD  579 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~-----g-----~~~~A~~  579 (727)
                      +...    .+..-|. ..=-++=...+..++.+.....-.    .......+-..|..|.-.     |     -.+.|..
T Consensus        73 ~~~~----~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~  147 (236)
T PF00244_consen   73 EKQV----KLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE  147 (236)
T ss_dssp             HHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             hHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence            1111    1111111 011122234445555554432111    111222222344444321     1     2368999


Q ss_pred             HHHHHHHHHHH-hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          580 SFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       580 ~~~~al~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                      .|++|+.+... +.+.+|...+.+++.-...|...|+.++|+.+.++|++.+...
T Consensus       148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~  202 (236)
T PF00244_consen  148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE  202 (236)
T ss_dssp             HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred             hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            99999999998 4555544445455444444456899999999999998875543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.33  E-value=0.79  Score=40.37  Aligned_cols=87  Identities=18%  Similarity=0.078  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      ...+..+..+-...++.+++..++....-+        .|.....-..-|.++...|+|.+|+.+|+.+..        .
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------~   73 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------R   73 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------c
Confidence            345666677777888999999888877777        788888889999999999999999999998753        3


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhH
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRS  702 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~  702 (727)
                      .|..+.+.-.++.++..+|+..=
T Consensus        74 ~~~~p~~kALlA~CL~~~~D~~W   96 (160)
T PF09613_consen   74 APGFPYAKALLALCLYALGDPSW   96 (160)
T ss_pred             CCCChHHHHHHHHHHHHcCChHH
Confidence            56677777788888888887653

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.28  E-value=0.13  Score=32.94  Aligned_cols=36  Identities=31%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .++..||.+-...++|++|+.-|++++++.++++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            478899999999999999999999999999887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.28  E-value=4.3  Score=41.36  Aligned_cols=147  Identities=14%  Similarity=0.063  Sum_probs=94.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848          470 HPAVASVFVRLADMYNRTGK------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (727)
                      +|....+|..+....-..-.            .+.-+.+|++|++.         +|.....+..+-.+.....+.++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            78888888888876655433            34556677777777         2222334444444555666777777


Q ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------chhHHHHHHHHH
Q 004848          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----------SAFFGVALNQMG  607 (727)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la  607 (727)
                      ..+++++...+..    ..+-..|...-......-.+......|.+++..+.......          ......++..+.
T Consensus        86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~  161 (321)
T PF08424_consen   86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC  161 (321)
T ss_pred             HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence            7778777764433    11111122222222233468899999999998877654432          233456777788


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHH
Q 004848          608 LACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      ....+.|-.+.|+..++-.+++
T Consensus       162 ~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  162 RFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHCCchHHHHHHHHHHHHH
Confidence            8889999999999999999987

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.07  E-value=0.42  Score=38.98  Aligned_cols=95  Identities=21%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHH
Q 004848          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ-----------LENSLMCYTTGLEVQK  339 (727)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~  339 (727)
                      +|.-++..|++-+|+++.+..+.....   ..++   +..+..-|.++..+..           .-.++++|.++..+  
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE---DESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC---CCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc--
Confidence            466789999999999999999877521   1111   1235666777655432           23567777777777  


Q ss_pred             HHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848          340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (727)
Q Consensus       340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (727)
                            .|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus        74 ------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   74 ------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence                  5777888888887766666677777777776654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.01  E-value=0.3  Score=38.81  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (727)
                      +..+++++..        +|+...+.+.+|..+...|++++|++.+-.++....      ......+...|-.++...|.
T Consensus         8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr------~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR------DYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T------TCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------cccccHHHHHHHHHHHHcCC
Confidence            4456667766        899999999999999999999999999988875421      11224455566666666666


Q ss_pred             hhHHH
Q 004848          700 VRSRK  704 (727)
Q Consensus       700 ~~~A~  704 (727)
                      -+.-.
T Consensus        74 ~~plv   78 (90)
T PF14561_consen   74 GDPLV   78 (90)
T ss_dssp             T-HHH
T ss_pred             CChHH
Confidence            55444

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.98  E-value=6.9  Score=38.53  Aligned_cols=132  Identities=17%  Similarity=0.154  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004848          325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET  404 (727)
Q Consensus       325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~  404 (727)
                      ++-++-+++.++-..+.+|+  ....+++...|..|.+.|+-+.|.+.+.+.....-..+..  +....+...+|..|  
T Consensus        81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy--  154 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFY--  154 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhh--
Confidence            44555666666665554443  4677899999999999999999999999988776655533  33344455556555  


Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (727)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (727)
                       ++.+-..+..++|-.++..+++....-..-...|.......+|.+|..+|-.++..+.
T Consensus       155 -~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  155 -LDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             -ccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence             4555555666667677777777655544555556667777888888888888776653

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.54  E-value=0.86  Score=34.45  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                      ...-|.-++...+.++|+..++++++....     .+....++-.+..+|...|+|.+++.+...-+++.....+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED   78 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            444566667888999999999999998533     4667788888999999999999999998888888766544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.49  E-value=1.5  Score=44.34  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCC
Q 004848          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (727)
Q Consensus       309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (727)
                      .++..+|..|...|+++.|++.|-++-..+..     .......+.++-.+-...|+|..-..+..+|............
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q  225 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ  225 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence            45888999999999999999999998877654     3567788889989999999998888888777665211000000


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          389 LEEAADRRLMGLICETKGDHEAALEHLVLA  418 (727)
Q Consensus       389 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a  418 (727)
                      ...+.+...-|.+...+++|..|..+|-.+
T Consensus       226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            000123444555666666888888877554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.29  E-value=0.26  Score=31.53  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      .++..||.+-+..++|++|+.-|++++++.++...
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999999999999999999877654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK10941 hypothetical protein; Provisional

Probab=93.24  E-value=1.1  Score=43.93  Aligned_cols=82  Identities=12%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (727)
                      .....+.++-.+|...++++.|+.+.+..+.+        .|+...-+...|.+|.++|.+..|..-++..++.+     
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----  245 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----  245 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence            34567888889999999999999999999999        78888888999999999999999999999999875     


Q ss_pred             CCChhHHHHHHHHHH
Q 004848          678 TANPDVDDEKRRLAE  692 (727)
Q Consensus       678 ~~~p~~~~~~~~La~  692 (727)
                      +++|........+..
T Consensus       246 P~dp~a~~ik~ql~~  260 (269)
T PRK10941        246 PEDPISEMIRAQIHS  260 (269)
T ss_pred             CCchhHHHHHHHHHH
Confidence            555655444444433

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.22  E-value=9.1  Score=37.55  Aligned_cols=219  Identities=11%  Similarity=0.121  Sum_probs=102.9

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004848          320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG  399 (727)
Q Consensus       320 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~  399 (727)
                      ..++|++|++.+..+...                      +.+.|++..|.++..-.++.......+...   .....+.
T Consensus         2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~   56 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLI   56 (260)
T ss_dssp             HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence            356677777666655444                      334444444444444444444443322221   1123444


Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcC
Q 004848          400 LICETKGDHE-AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA-----------LTAFKTNKG  467 (727)
Q Consensus       400 ~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~  467 (727)
                      .+....+.-+ +-..+..+++......+........+..+|..|...|++.+|..+|-..           +..+.... 
T Consensus        57 ~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~-  135 (260)
T PF04190_consen   57 ELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKG-  135 (260)
T ss_dssp             HHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhc-
Confidence            4444443222 3445556666666444555667788889999999999999998887321           11122222 


Q ss_pred             CCChhHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHhcCCC---------CCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848          468 ENHPAVASVFVRLA-DMYNRTGKLRESKSYCENALRIYEKPVP---------GVPPEEIASGLTDVSSIYESMNELEQAI  537 (727)
Q Consensus       468 ~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (727)
                        .+.....+...| ..|...++...|...+..-.+.+....+         ....|.. .....|-.+ +..+    +.
T Consensus       136 --~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t-~e~~----~~  207 (260)
T PF04190_consen  136 --YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLL-NFLQLLLLT-CERD----NL  207 (260)
T ss_dssp             --SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHH-HHHHHHHHH-HHHT-----H
T ss_pred             --CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchH-HHHHHHHHH-HhcC----cH
Confidence              233333333333 3466679999999888777765221100         1112221 111111111 2222    23


Q ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC
Q 004848          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG  572 (727)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  572 (727)
                      ..|....+.+......++.....+..+|..|+...
T Consensus       208 ~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  208 PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence            55665555555443333344556677777777643

; PDB: 3LKU_E 2WPV_G.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.20  E-value=0.098  Score=48.16  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCCCCc
Q 004848          650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNNDGI  723 (727)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~~i  723 (727)
                      ......++.+.|.+.|.+++++        -|+....|+++|....+.|+++.|. +.|++.++++|. .....+
T Consensus         3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~D~~gaa~   68 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPEDHGGAAL   68 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcccccchhh
Confidence            3456778999999999999987        5999999999999999999999999 999999999998 544433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.08  E-value=3.3  Score=38.07  Aligned_cols=84  Identities=12%  Similarity=0.154  Sum_probs=60.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL  480 (727)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  480 (727)
                      .++..-.-+.|+..|.++.     .......+...+.+|..|. .-+.++|+.++.+++++...    ++...+.++..|
T Consensus       115 y~Wsr~~d~~A~~~fL~~E-----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sL  184 (203)
T PF11207_consen  115 YHWSRFGDQEALRRFLQLE-----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSL  184 (203)
T ss_pred             HHhhccCcHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHH
Confidence            3444445567777765542     1223345677788887776 67899999999999998533    234567889999


Q ss_pred             HHHHHHcCChHHHH
Q 004848          481 ADMYNRTGKLRESK  494 (727)
Q Consensus       481 a~~~~~~g~~~~A~  494 (727)
                      +.+|..+|+++.|-
T Consensus       185 as~~~~~~~~e~AY  198 (203)
T PF11207_consen  185 ASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHhcchhhhh
Confidence            99999999999874

>smart00028 TPR Tetratricopeptide repeats

Probab=93.06  E-value=0.12  Score=31.20  Aligned_cols=32  Identities=13%  Similarity=0.151  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          685 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       685 ~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++..+|.++...|++++|. ..++.+++++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~-~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEAL-EYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence            46789999999999999999 999999988774

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.90  E-value=1.3  Score=36.10  Aligned_cols=94  Identities=17%  Similarity=0.160  Sum_probs=57.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC----CH-------HHHHHHHHHHHHHHHH
Q 004848          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY----SI-------NEAVELFEEARSILEQ  632 (727)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~-------~~A~~~~~~al~~~~~  632 (727)
                      ++.-++..|++-+|+++.+..+..-..   ..+  ....+..-|.++..+.    +.       -.++++|.++..+   
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L---   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE---DES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL---   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC---CCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---
Confidence            366788999999999999998775322   111  1245555566665443    33       3456666666666   


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                           .|..+..++.||.-+....-|+++..-.++++.
T Consensus        74 -----sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   74 -----SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             -----ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence                 777777777777665544445555544444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.58  E-value=0.86  Score=31.83  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (727)
                      +.++.+|..+.++|+|++|..+.+.++++        .|++..+...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L   40 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence            36789999999999999999999999998        5666655543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.57  E-value=21  Score=40.08  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=20.5

Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (727)
                      ....-.+....|.-....|++++|+.+|.-|
T Consensus       410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La  440 (613)
T PF04097_consen  410 EDFLREIIEQAAREAEERGRFEDAILLYHLA  440 (613)
T ss_dssp             SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3445556666777777788888887777654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.54  E-value=7.3  Score=34.68  Aligned_cols=134  Identities=13%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch
Q 004848          225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA  304 (727)
Q Consensus       225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  304 (727)
                      +..+..+.+.++ .++|+..|...-+.    +  .. ..-..+....|.+....|+...|+..|..+-.....   |.. 
T Consensus        62 flaAL~lA~~~k-~d~Alaaf~~lekt----g--~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~-  129 (221)
T COG4649          62 FLAALKLAQENK-TDDALAAFTDLEKT----G--YG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQI-  129 (221)
T ss_pred             HHHHHHHHHcCC-chHHHHHHHHHHhc----C--CC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cch-
Confidence            344555666666 77777766654432    1  11 122456778899999999999999999987665311   111 


Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                       ..-.+...-+.++...|-|++-....       ..+.++.+|....+.-.||..-++.|++..|..+|.+...
T Consensus       130 -~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         130 -GRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             -hhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence             11123556677778888877654433       3334566788888899999999999999999999988765

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=92.38  E-value=7.9  Score=38.16  Aligned_cols=114  Identities=16%  Similarity=0.099  Sum_probs=75.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      ......++.+.|..|++.|+-+.|++.+.+..+..-..+  ..-+.......+|.+|...   +--.+..++|-.++++ 
T Consensus       100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~---~lV~~~iekak~liE~-  173 (393)
T KOG0687|consen  100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH---DLVTESIEKAKSLIEE-  173 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH---HHHHHHHHHHHHHHHh-
Confidence            456678899999999999999999999988776544433  1344555666677776554   3344445555555555 


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                        |.+....-..-..-|.......++.+|-.+|-.++..+..
T Consensus       174 --GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  174 --GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             --CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence              4444443344444566666778888888888877766543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.32  E-value=3.6  Score=37.81  Aligned_cols=78  Identities=14%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      .-++|...|.++-.       ...-+.+...+.||..|. ..+.++|+.+|.+++++..    +++.-+++++..|+.++
T Consensus       121 ~d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~  188 (203)
T PF11207_consen  121 GDQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIY  188 (203)
T ss_pred             CcHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHH
Confidence            34566666655432       223456778888888777 6689999999999998753    33345688999999999


Q ss_pred             HHhCChhHHH
Q 004848          695 KEAGRVRSRK  704 (727)
Q Consensus       695 ~~~g~~~~A~  704 (727)
                      ..+|+++.|.
T Consensus       189 ~~~~~~e~AY  198 (203)
T PF11207_consen  189 QKLKNYEQAY  198 (203)
T ss_pred             HHhcchhhhh
Confidence            9999999986

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.06  E-value=2.1  Score=37.72  Aligned_cols=88  Identities=8%  Similarity=-0.035  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      ......+..+..+-...++.+++...+.-..-+        .|.....-..-|.++...|+|.+|+.+|+....-     
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----   73 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-----   73 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----
Confidence            344455666666777777888887777655444        6777888888888888888888888888875443     


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNEL  533 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~  533 (727)
                          .+....+--.++.|+..+|+.
T Consensus        74 ----~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   74 ----APGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCh
Confidence                233344445567777777664

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.96  E-value=1.2  Score=31.15  Aligned_cols=40  Identities=15%  Similarity=0.074  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  648 (727)
                      .+++.+|..+.+.|+|++|..+.+.++++        .|+...+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHH
Confidence            36788999999999999999999999999        78776654433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.89  E-value=3.9  Score=40.02  Aligned_cols=76  Identities=22%  Similarity=0.234  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      ...++..++..+...|+++.++..+++.+..        +|..-.+|..+-..|...|+...|+..|++.-....+-+|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            4578889999999999999999999999998        99999999999999999999999999999999877666665


Q ss_pred             CChh
Q 004848          679 ANPD  682 (727)
Q Consensus       679 ~~p~  682 (727)
                      ....
T Consensus       224 ~P~~  227 (280)
T COG3629         224 DPAP  227 (280)
T ss_pred             CccH
Confidence            4433

>smart00101 14_3_3 14-3-3 homologues

Probab=91.61  E-value=13  Score=35.72  Aligned_cols=183  Identities=15%  Similarity=0.127  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848          353 CRYLAEAHVQALQFSEAQKFCQMALDI-HKDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE  430 (727)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (727)
                      +..+|.+..+.++|++.+.+..++... .+....      ..-.+.+..+|- ..|....+...+......-...+....
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt------~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~   77 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT------VEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH   77 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC------HHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence            456778888899999999999998775 221111      122455555553 346666666665432111011111111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHc-----CC-----hHHHHHHH
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH---PAVASVFVRLADMYNRT-----GK-----LRESKSYC  497 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~  497 (727)
                      .     .+..-|. ..=-++-...+...+.+.....-+..   ......+-..|..|...     |+     .+.|...|
T Consensus        78 ~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY  151 (244)
T smart00101       78 V-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY  151 (244)
T ss_pred             H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            1     1111111 11123445567777777766543321   22233333445555432     22     45889999


Q ss_pred             HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      +.|+++....++..++-....+++.-...|.-+++.++|..+.++|+.-.
T Consensus       152 ~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      152 KSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999987755444444444444444455556799999998887777654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.51  E-value=9.8  Score=33.93  Aligned_cols=148  Identities=14%  Similarity=0.085  Sum_probs=98.4

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004848          482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE  561 (727)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  561 (727)
                      .-|+..+.-..+-..|..++++.                        ..+..++|+..|...-+   ...+..+  ..+.
T Consensus        47 y~yw~~s~as~sgd~flaAL~lA------------------------~~~k~d~Alaaf~~lek---tg~g~Yp--vLA~   97 (221)
T COG4649          47 YTYWQTSRASKSGDAFLAALKLA------------------------QENKTDDALAAFTDLEK---TGYGSYP--VLAR   97 (221)
T ss_pred             eehhcccccccchHHHHHHHHHH------------------------HcCCchHHHHHHHHHHh---cCCCcch--HHHH
Confidence            34556666666666666666663                        33555677666654332   2233333  3456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (727)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (727)
                      ...+.+....|+...|+..|.++-.-..     .|. ....+...-+.++...|-|++-...       .+.+.++.+|-
T Consensus        98 mr~at~~a~kgdta~AV~aFdeia~dt~-----~P~~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~m  165 (221)
T COG4649          98 MRAATLLAQKGDTAAAVAAFDEIAADTS-----IPQIGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPM  165 (221)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCChh
Confidence            6789999999999999999998754211     111 1123444556677778877665443       33444566788


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      ...+...||..-++.|++.+|..+|.+...
T Consensus       166 R~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            888899999999999999999999998875

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.48  E-value=1.9  Score=44.62  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (727)
Q Consensus       267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (727)
                      ++..|..+++-+|+|..|++.++.. ++.....-...+...+.+++.+|.+|..+++|.+|+..|...+-...+
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456678889999999999998753 333222222334456677999999999999999999999998876544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=91.19  E-value=21  Score=37.05  Aligned_cols=172  Identities=16%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--
Q 004848          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG--  592 (727)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--  592 (727)
                      ....+|+.....+...++-+.|+...++++...+.          ....++.+|....+-+....+|+++.+.+....  
T Consensus       300 ~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps----------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~  369 (660)
T COG5107         300 YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS----------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSM  369 (660)
T ss_pred             hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc----------hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhh
Confidence            34566777777777788888888887777665443          234567777777777777777777765433210  


Q ss_pred             ---------CCCchh-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH-H
Q 004848          593 ---------ERKSAF-----------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG-T  651 (727)
Q Consensus       593 ---------~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~  651 (727)
                               +.++..           ...++..+-..-.+..-.+.|..+|-++.+.-  .      ....+|..-|. -
T Consensus       370 ~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~--~------~~h~vyi~~A~~E  441 (660)
T COG5107         370 GESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG--I------VGHHVYIYCAFIE  441 (660)
T ss_pred             hhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC--C------CCcceeeeHHHHH
Confidence                     001100           01112212222223334566777777665541  1      11112222222 2


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                      |...|++.-|...|+-.+..        +|+........-..+...++-+.|. ..|++++.
T Consensus       442 ~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~nar-aLFetsv~  494 (660)
T COG5107         442 YYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENAR-ALFETSVE  494 (660)
T ss_pred             HHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHH-HHHHHhHH
Confidence            56789999999999988765        4555555555556677888888888 88886654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.16  E-value=3  Score=36.12  Aligned_cols=84  Identities=18%  Similarity=0.129  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      .+..+..+-...++++++..++....-+        .|....+-..-|.++...|+|.+|+..|+...+-        .+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~~   75 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------AG   75 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------CC
Confidence            3444444555588899998888877666        7888888888999999999999999999987742        33


Q ss_pred             hHHHHHHHHHHHHHHhCChh
Q 004848          682 DVDDEKRRLAELLKEAGRVR  701 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~  701 (727)
                      ..+.+.-.++.++..+|+..
T Consensus        76 ~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        76 APPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CchHHHHHHHHHHHhcCChH
Confidence            44556666778888777755

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK10941 hypothetical protein; Provisional

Probab=91.14  E-value=0.56  Score=45.91  Aligned_cols=72  Identities=11%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCCC
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNND  721 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~~  721 (727)
                      ..+.+|-.+|...++++.|+.+.+..+.+        .|+.+.-+...|.+|.++|.+..|. ..|+..++..|+ ...+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCCchhHH
Confidence            46678888999999999999999999987        5777778888999999999999999 999999999998 5444


Q ss_pred             Cc
Q 004848          722 GI  723 (727)
Q Consensus       722 ~i  723 (727)
                      .|
T Consensus       253 ~i  254 (269)
T PRK10941        253 MI  254 (269)
T ss_pred             HH
Confidence            33

>smart00101 14_3_3 14-3-3 homologues

Probab=91.05  E-value=15  Score=35.34  Aligned_cols=182  Identities=13%  Similarity=0.121  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHh-cCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCCCCC
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYE-KPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      +..+|.+..+.++|++.+.+..++++... ..+       ...-.+.|..+|-. .|....+...+.. ++......+..
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL-------t~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~   75 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL-------TVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE   75 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC-------CHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch
Confidence            45678888899999999999999887632 111       11223334444432 3555555555544 22211111111


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHHHHH-----hC-----CHHHHHH
Q 004848          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK---SAFFGVALNQMGLACVQ-----RY-----SINEAVE  621 (727)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~-----~g-----~~~~A~~  621 (727)
                      ...     .+..-|. ..=-++-..+....+.++....-+.   +......+-..|..|.-     .|     -.+.|..
T Consensus        76 ~~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       76 DHV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            110     1111111 1112233445556666654432211   11122222233443332     12     2568999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  672 (727)
                      .|+.|+++......|.||-......+.+.+|.. +++.++|..+.++++.-.
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999998887888899888877887777654 699999998888877654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>smart00028 TPR Tetratricopeptide repeats

Probab=90.97  E-value=0.23  Score=29.78  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (727)
                      .++..+|.++...++++.|..++++++.+.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            4678899999999999999999999987654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.95  E-value=3.7  Score=32.60  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       328 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                      +..+++.++.        +|....+.+.+|..+...|++++|++.+-.++...+...+
T Consensus         8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~   57 (90)
T PF14561_consen    8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED   57 (90)
T ss_dssp             HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence            4456666666        7999999999999999999999999999999888766643

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.76  E-value=7.6  Score=37.68  Aligned_cols=79  Identities=23%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                      ..+...+..|...|.+.+|+.+.++++.+        +|-.-..+..|-.++..+|+--.|...|++.-+..+.-+|-+-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            45556678899999999999999999999        8988889999999999999999999999999988888777655


Q ss_pred             hhHHHHH
Q 004848          681 PDVDDEK  687 (727)
Q Consensus       681 p~~~~~~  687 (727)
                      .+...-|
T Consensus       352 ddsieew  358 (361)
T COG3947         352 DDSIEEW  358 (361)
T ss_pred             chhHHHH
Confidence            5444433

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.59  E-value=19  Score=35.53  Aligned_cols=111  Identities=10%  Similarity=-0.002  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (727)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (727)
                      ..+.+...||.+|.+.++|..|...+.- +.........+.-.....+..+|.+|...++..+|..+..++.-+.....+
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            4567788999999999999998877642 222211111122234566888999999999999999999988655554444


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL  459 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  459 (727)
                      .......-...|+++-..++|-+|...|-+..
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455677777777777766665543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=90.45  E-value=0.68  Score=44.71  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=57.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848          606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDD  685 (727)
Q Consensus       606 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~  685 (727)
                      .|.-....|+.++|..+|+.|+.+        .|....++..+|.+....++.-+|-.+|-+|+.+        .|.+.+
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse  185 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE  185 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence            344456789999999999999999        8888999999999999999999999999999976        455555


Q ss_pred             HHHHH
Q 004848          686 EKRRL  690 (727)
Q Consensus       686 ~~~~L  690 (727)
                      ++.+.
T Consensus       186 ALvnR  190 (472)
T KOG3824|consen  186 ALVNR  190 (472)
T ss_pred             HHhhh
Confidence            55443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.45  E-value=5.9  Score=40.38  Aligned_cols=107  Identities=7%  Similarity=-0.020  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC---ch-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD---PR-------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (727)
Q Consensus       312 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (727)
                      +.-|..++++++|..|..-|..+|+++.+...-..   +.       ...+...|..||...++.+-|+....+.+.+.|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            33456677888888888889998888766432221   11       123456788999999999999999999999887


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       382 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      ....        -+...+.++..+.+|.+|...+.-+.-++-..+
T Consensus       260 ~~fr--------nHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  260 SYFR--------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             chhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7653        366778888889999999887766654444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.41  E-value=10  Score=40.33  Aligned_cols=158  Identities=19%  Similarity=0.155  Sum_probs=83.4

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004848          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV-GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR  395 (727)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  395 (727)
                      .....++++++....... ++.        |.. ..-...++..+.++|..+.|+.+...--.                .
T Consensus       270 ~av~~~d~~~v~~~i~~~-~ll--------~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~----------------r  324 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAAS-NLL--------PNIPKDQGQSIARFLEKKGYPELALQFVTDPDH----------------R  324 (443)
T ss_dssp             HHHHTT-HHH-----HHH-HTG--------GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------------H
T ss_pred             HHHHcCChhhhhhhhhhh-hhc--------ccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH----------------H
Confidence            345578888876666311 111        111 22356677778888888888776543211                2


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004848          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (727)
Q Consensus       396 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (727)
                      +   .+....|+++.|.+...+           ......|..||.....+|+++-|..+|+++-..              
T Consensus       325 F---eLAl~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------  376 (443)
T PF04053_consen  325 F---ELALQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF--------------  376 (443)
T ss_dssp             H---HHHHHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------
T ss_pred             h---HHHHhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------
Confidence            2   234567888888776531           223457888999999999999999988876443              


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (727)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (727)
                        ..|..+|...|+.+.=.++.+.+...      +        -++..-.+++..|+.++.++.+.++
T Consensus       377 --~~L~lLy~~~g~~~~L~kl~~~a~~~------~--------~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  377 --SGLLLLYSSTGDREKLSKLAKIAEER------G--------DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             --HHHHHHHHHCT-HHHHHHHHHHHHHT------T---------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             --cccHHHHHHhCCHHHHHHHHHHHHHc------c--------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence              34556677777765443333333222      0        0122223445556666666555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.40  E-value=17  Score=38.81  Aligned_cols=152  Identities=11%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC---------------CChHhHHHHHHHHHHHHHhcccHH
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG---------------VPPEEIASGLTDVSSIYESMNELE  534 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------~~~~~~~~~~~~la~~~~~~g~~~  534 (727)
                      +|.....+..++.+...+|+.+-|..+.++++=.+......               ........+++..-..+...|-+.
T Consensus       280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r  359 (665)
T KOG2422|consen  280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR  359 (665)
T ss_pred             CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence            68888999999999999999999999999988766553210               111122333444445566789999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC
Q 004848          535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (727)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  614 (727)
                      .|.++++-.+.+.+..  ++   ..+.+.+-...++..+|.=-+.+++..-.. ..+..-  +.++ .-..+|..|....
T Consensus       360 TA~E~cKlllsLdp~e--DP---l~~l~~ID~~ALrareYqwiI~~~~~~e~~-n~l~~~--PN~~-yS~AlA~f~l~~~  430 (665)
T KOG2422|consen  360 TALEWCKLLLSLDPSE--DP---LGILYLIDIYALRAREYQWIIELSNEPENM-NKLSQL--PNFG-YSLALARFFLRKN  430 (665)
T ss_pred             HHHHHHHHHhhcCCcC--Cc---hhHHHHHHHHHHHHHhHHHHHHHHHHHHhh-ccHhhc--CCch-HHHHHHHHHHhcC
Confidence            9999999988886642  11   112222333333444555444444433211 111111  1111 1123555666555


Q ss_pred             C---HHHHHHHHHHHHHHH
Q 004848          615 S---INEAVELFEEARSIL  630 (727)
Q Consensus       615 ~---~~~A~~~~~~al~~~  630 (727)
                      .   -..|...+.+|+.+.
T Consensus       431 ~~~~rqsa~~~l~qAl~~~  449 (665)
T KOG2422|consen  431 EEDDRQSALNALLQALKHH  449 (665)
T ss_pred             ChhhHHHHHHHHHHHHHhC
Confidence            4   567888888888773

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=90.16  E-value=37  Score=38.21  Aligned_cols=152  Identities=11%  Similarity=0.004  Sum_probs=85.0

Q ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 004848          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (727)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  425 (727)
                      ++.....+..|..++...|++++-...-.++-++.|-..   ..  ..-|..--......++-..+...|++++.-....
T Consensus       109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~---~l--Wl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v  183 (881)
T KOG0128|consen  109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP---HL--WLEWLKDELSMTQSEERKEVEELFEKALGDYNSV  183 (881)
T ss_pred             cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh---HH--HHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence            345556677777888889998877776666666665432   11  1111111111222367778888888887422222


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      ......+......+..+...++++.-...|.+++...-..... .......+..+-..|...-..++-+.++...+..
T Consensus       184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~  260 (881)
T KOG0128|consen  184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ  260 (881)
T ss_pred             hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            2222233333333444556678888889999988764433221 2234455555555555555556666666666554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.12  E-value=8.1  Score=39.43  Aligned_cols=62  Identities=15%  Similarity=0.109  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004848          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (727)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (727)
                      .-.|..||..+++.+-|+....+.+.+        +|....-+...|.++..+.+|.+|.+-+--+.-++
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557889999999999999999999988        78888889999999999999999887765554433

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=90.09  E-value=21  Score=35.30  Aligned_cols=55  Identities=20%  Similarity=0.129  Sum_probs=29.4

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                      ...+..+..+-++....|+++         .+.-+.+|..|+.-  ..--..+|..++++|++...
T Consensus       193 ~AWRERnp~~RI~~A~~ALeI---------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e  247 (556)
T KOG3807|consen  193 KAWRERNPPARIKAAYQALEI---------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGE  247 (556)
T ss_pred             HHHHhcCcHHHHHHHHHHHhc---------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH
Confidence            334444555555666666666         34445555555432  22234566777777776543

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.05  E-value=13  Score=38.09  Aligned_cols=118  Identities=15%  Similarity=0.017  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHcCC---hhHHHHHHHHhcccch
Q 004848          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK--PSLELVMCLHVIAAIYCSLGQ---YNEAIPVLEQSIEIPV  296 (727)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~  296 (727)
                      ..+...|+.++.... |.+|+.++..|-+.|-.+...-  .-...+..-..+-|||+.+.+   .+.|..-+..+-+-+.
T Consensus       164 lg~hekaRa~m~re~-y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~  242 (568)
T KOG2561|consen  164 LGLHEKARAAMEREM-YSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE  242 (568)
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence            345678888888875 9999999999888776552110  001233344556788887766   4556665555544433


Q ss_pred             hccCccc-----------hH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          297 IEEGQEH-----------AL--AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (727)
Q Consensus       297 ~~~~~~~-----------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (727)
                      ...|.++           |.  .....+..-|.+.+.+|+-++|.++++.+.....+
T Consensus       243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e  299 (568)
T KOG2561|consen  243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE  299 (568)
T ss_pred             hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            3333222           21  12334455577777777777777777777665444

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=89.81  E-value=58  Score=40.02  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC------------------------
Q 004848          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR------------------------  447 (727)
Q Consensus       392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------------  447 (727)
                      +.....+|.+|...|.+.+|+.+|..|+..++..++....+.++-.++.+....+.                        
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~  321 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS  321 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence            45677899999999999999999999999999999988888887766654432110                        


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHHhc---CCCCh--hHHHHHHHHHHHHHHcC--
Q 004848          448 --------------------------------YDEAGFAYQKALTAFKTNK---GENHP--AVASVFVRLADMYNRTG--  488 (727)
Q Consensus       448 --------------------------------~~~A~~~~~~al~~~~~~~---~~~~~--~~~~~~~~la~~~~~~g--  488 (727)
                                                      ...-...+++++.++.+..   .+..|  -...+...++.++....  
T Consensus       322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~  401 (1185)
T PF08626_consen  322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS  401 (1185)
T ss_pred             CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence                                            1112234455555555443   11122  23456667777777776  


Q ss_pred             ------------------ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          489 ------------------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       489 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                                        .-.++..++.+++.+.-.   .-+..+...++..+|.+|...|-..++.-+++.++...-
T Consensus       402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~---~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~  476 (1185)
T PF08626_consen  402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK---DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV  476 (1185)
T ss_pred             cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh---hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence                              677777888888776433   223556788899999999999988888777777776654

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.64  E-value=6.7  Score=41.75  Aligned_cols=158  Identities=18%  Similarity=0.164  Sum_probs=88.6

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004848          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (727)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (727)
                      ....++++++.++... -.+.|...       ......++..+...|-.+.|+.+..           ++   ..   .-
T Consensus       271 av~~~d~~~v~~~i~~-~~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~~~-----------D~---~~---rF  325 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAA-SNLLPNIP-------KDQGQSIARFLEKKGYPELALQFVT-----------DP---DH---RF  325 (443)
T ss_dssp             HHHTT-HHH-----HH-HHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS------------H---HH---HH
T ss_pred             HHHcCChhhhhhhhhh-hhhcccCC-------hhHHHHHHHHHHHCCCHHHHHhhcC-----------Ch---HH---Hh
Confidence            3456788887666631 11222221       1226677888889999999987653           22   12   22


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHH
Q 004848          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (727)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (727)
                      .+....|+++.|.+..++             ......|..||......|+++-|..+|+++-..                
T Consensus       326 eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------------  376 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------------  376 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------
T ss_pred             HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------
Confidence            345678998888765432             224468999999999999999999999886433                


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (727)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (727)
                       ..|..+|...|+.+.=.++...    .... +.       ++..-.+++..|+.++.++.+.++
T Consensus       377 -~~L~lLy~~~g~~~~L~kl~~~----a~~~-~~-------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  377 -SGLLLLYSSTGDREKLSKLAKI----AEER-GD-------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -HHHHHHHHHCT-HHHHHHHHHH----HHHT-T--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -cccHHHHHHhCCHHHHHHHHHH----HHHc-cC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence             3466677888886543333333    3222 11       122234556667777776666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.33  E-value=43  Score=37.79  Aligned_cols=49  Identities=12%  Similarity=-0.018  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 004848          245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (727)
Q Consensus       245 ~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  295 (727)
                      |.-|+.+.+..  ..+......++...|..++..|++++|..+|-+.+...
T Consensus       350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            44455555443  23335567788889999999999999999999998763

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.24  E-value=3.1  Score=31.45  Aligned_cols=50  Identities=10%  Similarity=0.050  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  270 (727)
                      .+..+...|..+-..|+ +++|+.+|++|++.+.++....|+......+..
T Consensus         5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~   54 (75)
T cd02682           5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ   54 (75)
T ss_pred             HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            45677888999999998 999999999999999988777666444433333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.18  E-value=52  Score=38.62  Aligned_cols=108  Identities=14%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (727)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (727)
                      ...++.....|+.|+..|++...-.+   |...   -..+.+++|.+...+-.-..--..|.+|+..+..+.+  .+..+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  552 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP  552 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence            45667778889999999999876652   1111   2335777777776543322222566666666555432  35555


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (727)
                      .-|...|.+|...|+|++-+++|.-|++..+.....
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            667788889999999999999999999998876543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.70  E-value=0.6  Score=26.98  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHH
Q 004848          267 CLHVIAAIYCSLGQYNEAIPVLEQ  290 (727)
Q Consensus       267 ~~~~la~~~~~~g~~~~A~~~~~~  290 (727)
                      ++..+|.++...|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567899999999999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.68  E-value=25  Score=34.21  Aligned_cols=136  Identities=15%  Similarity=0.144  Sum_probs=88.3

Q ss_pred             hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004848          321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL  400 (727)
Q Consensus       321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~  400 (727)
                      ...-++-++-+.+.++-.+...|  .....+++.++|..|.+.++.+.+.+++.+.+...-..+-.  +....+...||.
T Consensus        88 ~kkneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K--iDv~l~kiRlg~  163 (412)
T COG5187          88 LKKNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK--IDVFLCKIRLGL  163 (412)
T ss_pred             HHhhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc--hhhHHHHHHHHH
Confidence            33445666667666665544222  24577899999999999999999999999998877665533  333344555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (727)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (727)
                      +|..+   .-..+.++.+-.++..+++....-..-...|.......+|.+|..++-..+..+.
T Consensus       164 ~y~d~---~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         164 IYGDR---KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             hhccH---HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            66444   3344444444455666666544444444456666677788888888877776543

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=88.56  E-value=28  Score=34.73  Aligned_cols=95  Identities=9%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             HHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004848          526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ  605 (727)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  605 (727)
                      +....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-..+.......+.. ...++.
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V-h~~fY~  161 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV-HSSFYS  161 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh-hhhHHH
Confidence            3445668999999999999887665 44456667788899999999999999999999888777766654433 334555


Q ss_pred             HH-HHHHHhCCHHHHHHH
Q 004848          606 MG-LACVQRYSINEAVEL  622 (727)
Q Consensus       606 la-~~~~~~g~~~~A~~~  622 (727)
                      ++ ..|...|++..+...
T Consensus       162 lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  162 LSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHhHHHHHHH
Confidence            55 555566776654433

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.53  E-value=17  Score=32.68  Aligned_cols=164  Identities=17%  Similarity=0.195  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Q 004848          349 VGETCRYLAEAHVQ-ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-----KGDHEAALEHLVLASMTM  422 (727)
Q Consensus       349 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~  422 (727)
                      .++.+..|+..+.- +.+|++|...|..       +-+....  +...+.+|..+..     .++...|++.+..+..  
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~-------nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--  101 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKK-------NCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--  101 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--
Confidence            44556666665432 3355555555543       3222111  2445666655542     3578899999987753  


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-----------
Q 004848          423 IANDQDAEVASVDCSIGDTYLSL-----S--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY-----------  484 (727)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-----------  484 (727)
                            .....+..++|.++..-     +  +..+|++++.++.++          ....+.+.|...|           
T Consensus       102 ------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~a  165 (248)
T KOG4014|consen  102 ------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNA  165 (248)
T ss_pred             ------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccC
Confidence                  23344555666666532     2  367888888887764          1223333333333           


Q ss_pred             -------------HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHH
Q 004848          485 -------------NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIY  547 (727)
Q Consensus       485 -------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  547 (727)
                                   ....+.+.|.++..+|-++           ....+..++.+.|..    -.+.++|..+-.+|.++.
T Consensus       166 p~~g~p~~~~~~~~~~kDMdka~qfa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  166 PGEGKPLDRAELGSLSKDMDKALQFAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             CCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence                         3335566676666666655           124456666666643    236788888888888877


Q ss_pred             HhC
Q 004848          548 NDA  550 (727)
Q Consensus       548 ~~~  550 (727)
                      ...
T Consensus       235 ~e~  237 (248)
T KOG4014|consen  235 EEL  237 (248)
T ss_pred             HHH
Confidence            643

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=88.43  E-value=10  Score=32.43  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=59.1

Q ss_pred             CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH
Q 004848          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (727)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (727)
                      +.-..-..++++++..+...-.-.+++....+|...+....      .+.+.|......     +.....+..|...|..
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~  108 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF  108 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence            55666678899999988664223345555666655555322      677777755443     3334457788899999


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 004848          568 YYMLGNYSDSYDSFKNAI  585 (727)
Q Consensus       568 ~~~~g~~~~A~~~~~~al  585 (727)
                      +...|++.+|...|+.++
T Consensus       109 le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  109 LEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHTT-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhC
Confidence            999999999999998764

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.32  E-value=17  Score=32.77  Aligned_cols=150  Identities=13%  Similarity=0.084  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-
Q 004848          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLS-----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-  487 (727)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-  487 (727)
                      .|+.|..++..+-+....+...+.+|..++.     .++...|++.+..+.+.          ..+.+...+|.++..- 
T Consensus        50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~  119 (248)
T KOG4014|consen   50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE  119 (248)
T ss_pred             HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence            3444444444444455555666667765543     45788888888887653          3345566677766542 


Q ss_pred             ----C--ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH------------------------hcccHHHHH
Q 004848          488 ----G--KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------------------------SMNELEQAI  537 (727)
Q Consensus       488 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~  537 (727)
                          +  +..+|+.++.++-.+-           ...+.+.|...|+                        -..+.+.|.
T Consensus       120 ~~r~~dpd~~Ka~~y~traCdl~-----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~  188 (248)
T KOG4014|consen  120 KDRKADPDSEKAERYMTRACDLE-----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL  188 (248)
T ss_pred             CCccCCCCcHHHHHHHHHhccCC-----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence                2  2667888888776551           1222333333333                        234555565


Q ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCC
Q 004848          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      ++--+|-++.         +..+..++.+.|..-    .+.++|..+-.+|.++.++...
T Consensus       189 qfa~kACel~---------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k  239 (248)
T KOG4014|consen  189 QFAIKACELD---------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK  239 (248)
T ss_pred             HHHHHHHhcC---------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence            5555554431         123445566665432    3678888888888888766543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=88.18  E-value=30  Score=36.22  Aligned_cols=141  Identities=15%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (727)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (727)
                      ......+..++..++|..|...+......   .++...  ...+..+  |..++..-++.+|.++++..+.....+    
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----  202 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----  202 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence            44556677788999999999999998865   222222  2334444  555677889999999999877642110    


Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                       ......+..+..       .-++...+.............-.+.....++..|.--...|+|+.|+..+-+++++.-+.
T Consensus       203 -~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~  274 (379)
T PF09670_consen  203 -NQEREGLKELVE-------VLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH  274 (379)
T ss_pred             -HhHHHHHHHHHH-------HHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence             000111111111       112222222222221110000011122223333333456899999999999999876543

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.18  E-value=33  Score=35.14  Aligned_cols=126  Identities=17%  Similarity=0.090  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004848          413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE  492 (727)
Q Consensus       413 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  492 (727)
                      +.++.-++..+.+......-.++..+|..|...|+++.|++.|-++...+..     ....+..+.++-.+-..+|+|..
T Consensus       131 e~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~h  205 (466)
T KOG0686|consen  131 EKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGH  205 (466)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhh
Confidence            3333333434444445556678899999999999999999999998887654     35567888888888889999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848          493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (727)
Q Consensus       493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (727)
                      -..+..+|....... ........+.+...-|.+.+.+++|..|..+|-.+.
T Consensus       206 v~sy~~~A~st~~~~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  206 VLSYISKAESTPDAN-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHHHHhCchhh-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            888888876652000 000011112234445556666678888888876543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.17  E-value=0.64  Score=26.85  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                      .+...||.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            367899999999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=87.60  E-value=13  Score=30.93  Aligned_cols=75  Identities=17%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      +..+|...+..+++-.++-+|++|+.+.++......       .-......+||..+..+|+.+-.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            345677777788888888888888887776631111       1123456789999999999999999998887765554


Q ss_pred             CC
Q 004848          508 VP  509 (727)
Q Consensus       508 ~~  509 (727)
                      .+
T Consensus        84 iP   85 (140)
T PF10952_consen   84 IP   85 (140)
T ss_pred             cc
Confidence            43

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=87.31  E-value=3.6  Score=43.11  Aligned_cols=103  Identities=14%  Similarity=0.053  Sum_probs=78.2

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---CChhHHHHHHHHhc
Q 004848          216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---GQYNEAIPVLEQSI  292 (727)
Q Consensus       216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al  292 (727)
                      .-|+.+...+..|.-.+..+. ...|+..|.+++...         |....+|.+.+.++++.   |+.-.|+.-...|+
T Consensus       369 eL~e~ie~~~~egnd~ly~~~-~~~~i~~~s~a~q~~---------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al  438 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESI-VSGAISHYSRAIQYV---------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL  438 (758)
T ss_pred             hchHHHHHHHhhccchhhhHH-HHHHHHHHHHHhhhc---------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc
Confidence            346677777777777777776 888999999988764         44577788888888775   45556777777777


Q ss_pred             ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (727)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (727)
                      ++.         ...+.+++.|+.++..++++.+|+.+...+...
T Consensus       439 rln---------~s~~kah~~la~aL~el~r~~eal~~~~alq~~  474 (758)
T KOG1310|consen  439 RLN---------PSIQKAHFRLARALNELTRYLEALSCHWALQMS  474 (758)
T ss_pred             cCC---------hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence            775         234567999999999999999999988766554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=87.04  E-value=3.7  Score=43.06  Aligned_cols=89  Identities=19%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      ....|+..|.+++..        .|+....|.+.|.++.+.+=...+...++.+....     .-+|....+++.|++++
T Consensus       389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al-----rln~s~~kah~~la~aL  455 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL-----RLNPSIQKAHFRLARAL  455 (758)
T ss_pred             HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc-----cCChHHHHHHHHHHHHH
Confidence            456778888888877        77888888888888887654444444444333222     23788899999999999


Q ss_pred             HHhCChhHHHHHHHHHHHHHhhh
Q 004848          695 KEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       695 ~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..++++.+|+ .+...+....|.
T Consensus       456 ~el~r~~eal-~~~~alq~~~Pt  477 (758)
T KOG1310|consen  456 NELTRYLEAL-SCHWALQMSFPT  477 (758)
T ss_pred             HHHhhHHHhh-hhHHHHhhcCch
Confidence            9999999999 888888777773

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=87.03  E-value=16  Score=30.41  Aligned_cols=75  Identities=12%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD-------TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      +..+|...++.+++-.++-+|++|+.+.++.......+       .+....+||..+..+|+.+-.+.|++-|-+....+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            44678888899999999999999999988874221111       12356799999999999999999999887765554


Q ss_pred             cC
Q 004848          676 LG  677 (727)
Q Consensus       676 ~g  677 (727)
                      ..
T Consensus        84 iP   85 (140)
T PF10952_consen   84 IP   85 (140)
T ss_pred             cc
Confidence            43

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.01  E-value=64  Score=37.87  Aligned_cols=200  Identities=11%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH------hccc----HHHHHHHHHHH
Q 004848          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------SMNE----LEQAIKLLQKA  543 (727)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~a  543 (727)
                      ....+.+|.+|...|+..+|+.+|.+|..-..+     .     .++..+..-..      ..|+    ...|..||.++
T Consensus       920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge-----~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv  989 (1480)
T KOG4521|consen  920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE-----G-----NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV  989 (1480)
T ss_pred             HHHHHhhheeeecCCchHHHHHHHHHHhhcccc-----H-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH
Confidence            456678899999999999999999999876422     1     12222211100      2232    22356777777


Q ss_pred             HHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004848          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (727)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  623 (727)
                      ++++...                     +-.+.+..+..+|++.   .++.. +..+..+..+=.-+..+|.+-+|...+
T Consensus       990 ~rlle~h---------------------n~~E~vcQlA~~AIe~---l~dd~-ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen  990 VRLLEEH---------------------NHAEEVCQLAVKAIEN---LPDDN-PSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred             HHHHHHh---------------------ccHHHHHHHHHHHHHh---CCCcc-hhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence            7766544                     3344455555555543   33333 445666666666777777777776554


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHH-----HHHHHHH-HHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE-----ILEFVVG-IREEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~-~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                      -+--         +......++..|-.+++..|.++.=.+     +-++... +.++..-...-.....|..|=-.+...
T Consensus      1045 ~~np---------dserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R 1115 (1480)
T KOG4521|consen 1045 LRNP---------DSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR 1115 (1480)
T ss_pred             HcCC---------cHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Confidence            3311         112233467778888888887653322     1112222 111111111122233444455567788


Q ss_pred             CChhHHHHHHHHHHHHHhhh
Q 004848          698 GRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       698 g~~~~A~~~~l~~al~~~p~  717 (727)
                      +++.+|..-.|+-+..+..+
T Consensus      1116 hN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1116 HNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred             cchhHHHHHHHHHHHHhccc
Confidence            99998886778888777665

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.89  E-value=34  Score=33.82  Aligned_cols=109  Identities=15%  Similarity=0.039  Sum_probs=70.3

Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                      ....+.+...||.+|.+.++|..|-..+.-.    +...|.    .......+..+|.+|...++..+|..+..++--+.
T Consensus        99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~  174 (399)
T KOG1497|consen   99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ  174 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence            3446677889999999999999887665422    111121    12345667899999999999999999998875544


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  627 (727)
                      ...  .++......-...|+++-..++|-+|...|-+..
T Consensus       175 a~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  175 AES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             hcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333  2222222233334566666777777666665443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=86.67  E-value=8.5  Score=32.74  Aligned_cols=69  Identities=19%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848          641 TLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       641 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (727)
                      .....+++|+++....+   ..+.+.+++..+.       ..+| ...+..+.|+.-+.+.|+|+.++ .++..+|+..|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~  102 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEP  102 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCC
Confidence            44578999999987665   4455555555553       2244 44677889999999999999999 99999999988


Q ss_pred             h
Q 004848          717 R  717 (727)
Q Consensus       717 ~  717 (727)
                      +
T Consensus       103 ~  103 (149)
T KOG3364|consen  103 N  103 (149)
T ss_pred             C
Confidence            6

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.60  E-value=39  Score=35.36  Aligned_cols=65  Identities=15%  Similarity=-0.016  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (727)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  337 (727)
                      ....+..++..++|..|..+|.......   .+...  .........|..++..-++.+|.+.++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRRL---PGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC---Cchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4455667788999999999999987641   11111  12222334455567788899999999987765

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=86.17  E-value=1.4  Score=42.55  Aligned_cols=62  Identities=15%  Similarity=0.237  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.|.-..+.|+.++|..+|+.|+.+        .|..++++..+|.+.....+.-+|- .+|-+||.++|-
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~AD-q~Y~~ALtisP~  182 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEAD-QCYVKALTISPG  182 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhh-hhhheeeeeCCC
Confidence            3444456789999999999999987        5888889999999999999999999 999999999885

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.08  E-value=2.1  Score=28.55  Aligned_cols=25  Identities=40%  Similarity=0.554  Sum_probs=23.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          646 SNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      +.||.+|..+|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6799999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=86.04  E-value=96  Score=38.20  Aligned_cols=228  Identities=13%  Similarity=0.002  Sum_probs=132.4

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---C------------------
Q 004848          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK---G------------------  406 (727)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~---g------------------  406 (727)
                      ..++....+|..+...|++.+|+..|..|+...+...+  ..+.+.++-.++.+....   |                  
T Consensus       240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D--~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~  317 (1185)
T PF08626_consen  240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSND--YLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS  317 (1185)
T ss_pred             hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCc--HhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence            34566778999999999999999999999999988764  355555555554333211   0                  


Q ss_pred             ------------------------------------------CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004848          407 ------------------------------------------DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (727)
Q Consensus       407 ------------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (727)
                                                                .+++|+.+|.++.......-...-..++...++.++..
T Consensus       318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~  397 (1185)
T PF08626_consen  318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA  397 (1185)
T ss_pred             cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence                                                      13444455544432111111222345566667777777


Q ss_pred             cC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          445 LS--------------------RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (727)
Q Consensus       445 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (727)
                      ..                    .-.++..++.+++...-...  ...+....+..+|.+|...|-..++.-+++.++..+
T Consensus       398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~  475 (1185)
T PF08626_consen  398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL  475 (1185)
T ss_pred             hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence            66                    67778888888877643322  245668899999999999999999888888887775


Q ss_pred             hcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC--CC-CCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA--PG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (727)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (727)
                      -... ..........+..+...|.-..+.+.-        ......  .+ .......++..+-.+....+++..+..+.
T Consensus       476 ~~~l-~~~~~s~~~lL~~~~~~Ygi~~~~~~~--------~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~  546 (1185)
T PF08626_consen  476 VPGL-IHWHQSYRSLLEELCKGYGISLDPESS--------SEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFS  546 (1185)
T ss_pred             cccc-CCcchHHHHHHHHHhccCcccCCcccc--------ccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3311 111111112222222222221111100        000000  00 01122344555566677788888888887


Q ss_pred             HHHHHHH
Q 004848          582 KNAISKL  588 (727)
Q Consensus       582 ~~al~~~  588 (727)
                      -..+..+
T Consensus       547 ~~LL~~~  553 (1185)
T PF08626_consen  547 SLLLRTY  553 (1185)
T ss_pred             HHHHHHH
Confidence            7766654

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=85.89  E-value=19  Score=38.45  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          430 EVASVDCSIGDTYLS--LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       430 ~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      ....++.+||.+-..  ...-..++.+|.+|+...+..++   .....-|..+|..|++.++|.+|+..+-+|-...+..
T Consensus       275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y  351 (618)
T PF05053_consen  275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY  351 (618)
T ss_dssp             T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred             hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334445555554432  23345678999999999998884   3345678889999999999999999999998887664

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.82  E-value=8.5  Score=33.48  Aligned_cols=85  Identities=8%  Similarity=-0.069  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      ...+..+...-...++.+++...+...--+        .|.....-..-|.++...|++.+|+..|+...+-        
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------   73 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------   73 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------
Confidence            334444455555578888887776654444        6777888888889999999999998888876544        


Q ss_pred             ChHhHHHHHHHHHHHHHhcccH
Q 004848          512 PPEEIASGLTDVSSIYESMNEL  533 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~  533 (727)
                       .+......-.++.|+..+|+.
T Consensus        74 -~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        74 -AGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             -CCCchHHHHHHHHHHHhcCCh
Confidence             112233444566677666664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=85.43  E-value=1.1  Score=41.45  Aligned_cols=55  Identities=20%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      ...+.++.+.|.+.|.+++.+        -|+....|+.+|....+.|+++.|...|++.+++
T Consensus         4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            445678999999999999999        8999999999999999999999999999999986

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.24  E-value=18  Score=35.51  Aligned_cols=70  Identities=10%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      ....++..++..+...|+++.++..+++.+..        +|..-..|..+-..|...|+...|+..|++.-......
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ed  220 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEE  220 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Confidence            44567888999999999999999999999998        89999999999999999999999999999988864443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.84  E-value=6.9  Score=29.93  Aligned_cols=50  Identities=22%  Similarity=0.065  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  270 (727)
                      .+..+...|..+-..|+ |++|+.+|.+|+..+.......+++..-..+..
T Consensus         5 ~a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~   54 (77)
T cd02683           5 AAKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQ   54 (77)
T ss_pred             HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            35567788888888997 999999999999999887766666555444443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=84.51  E-value=47  Score=33.26  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=70.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (727)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (727)
                      .+..+.++.++|++++++..........+.........+|.++...|+..++.+.+...-.......+- .+.....++.
T Consensus        83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~  161 (380)
T KOG2908|consen   83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYS  161 (380)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHH
Confidence            344566799999999999988887777777778888899999999999999999998887776655432 3434455555


Q ss_pred             HHHHH-HHcCChHHHHHH
Q 004848          480 LADMY-NRTGKLRESKSY  496 (727)
Q Consensus       480 la~~~-~~~g~~~~A~~~  496 (727)
                      ++.-| ...|++......
T Consensus       162 lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  162 LSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHhHHHHHHH
Confidence            65544 456777654333

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=84.42  E-value=12  Score=31.88  Aligned_cols=87  Identities=13%  Similarity=0.112  Sum_probs=54.5

Q ss_pred             CChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 004848          279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE  358 (727)
Q Consensus       279 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  358 (727)
                      +.-..-..++++++........-.+....+.+|...+..    -.  .+...|..+....   .   ....+..|...|.
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~~--~~~~if~~l~~~~---I---G~~~A~fY~~wA~  107 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----SS--DPREIFKFLYSKG---I---GTKLALFYEEWAE  107 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----BS--HHHHHHHHHHHHT---T---STTBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----cc--CHHHHHHHHHHcC---c---cHHHHHHHHHHHH
Confidence            445556677777777653322222222233334444432    22  7888888765541   1   2467788999999


Q ss_pred             HHHHhcCHHHHHHHHHHHH
Q 004848          359 AHVQALQFSEAQKFCQMAL  377 (727)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al  377 (727)
                      .+...|++.+|.+.|+.++
T Consensus       108 ~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  108 FLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhC
Confidence            9999999999999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=83.89  E-value=5.6  Score=29.65  Aligned_cols=49  Identities=24%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  270 (727)
                      +..+...|..+-..|+ +++|+++|.+|+..+-......+++..-..+..
T Consensus         5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~   53 (69)
T PF04212_consen    5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQALRQ   53 (69)
T ss_dssp             HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            4567788888889997 999999999999998776554455544444433

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.52  E-value=8.6  Score=39.43  Aligned_cols=122  Identities=16%  Similarity=0.091  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHH
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGP---YHPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIRE  673 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~  673 (727)
                      +..++..|++.+....|.+|+.++-.|-+.+......   .-..++..-..+.+||+.+.+   ..+|..-+..|-+-+.
T Consensus       163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~  242 (568)
T KOG2561|consen  163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE  242 (568)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence            4556667777778888888888877776665432110   011222233456678877764   4566666666655555


Q ss_pred             HhcC-----------CCChhHHH---HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh--cCCCC
Q 004848          674 EKLG-----------TANPDVDD---EKRRLAELLKEAGRVRSRKAQSLETLLDANSR--VNNDG  722 (727)
Q Consensus       674 ~~~g-----------~~~p~~~~---~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~--~~~~~  722 (727)
                      ..+|           +..|+.+.   .+..-|.+.+.+|+.++|. ++|+.+...--+  ++++.
T Consensus       243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAy-e~le~a~~~l~elki~d~~  306 (568)
T KOG2561|consen  243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAY-EALESAHAKLLELKINDET  306 (568)
T ss_pred             hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHeeccchH
Confidence            5444           44555433   3445688899999999999 999998876655  55443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=83.01  E-value=69  Score=34.06  Aligned_cols=164  Identities=11%  Similarity=0.063  Sum_probs=95.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhH
Q 004848          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (727)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (727)
                      .+-.++...-.+.-....+.+.+.+         ...-.++..++.+|... ..++-...+++..+..         ...
T Consensus        71 ~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---------fnD  131 (711)
T COG1747          71 TLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---------FND  131 (711)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---------chh
Confidence            3344444445555666777888876         34457888999999988 5566677777777762         222


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (727)
                      ...-..|+..|.. ++...+..+|.+++...-.. .....+-.+|..+-..  --.+.+.-+....   ++....+... 
T Consensus       132 vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~fl~l~~---kiqt~lg~~~-  203 (711)
T COG1747         132 VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFFLRLQK---KIQTKLGEGR-  203 (711)
T ss_pred             HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHHHHHHH---HHHHhhccch-
Confidence            3444567777766 88899999999998765432 1122233334333221  1223333222222   2222222221 


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                        ...++..+-.-|....++++|++.+.-.++.
T Consensus       204 --~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~  234 (711)
T COG1747         204 --GSVLMQDVYKKYSENENWTEAIRILKHILEH  234 (711)
T ss_pred             --HHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence              2233444445666778999999999877766

>PRK09169 hypothetical protein; Validated

Probab=82.88  E-value=1.5e+02  Score=37.99  Aligned_cols=17  Identities=6%  Similarity=0.149  Sum_probs=8.5

Q ss_pred             HHHHHHHHhCCHHHHHH
Q 004848          313 QLGDTYAMLGQLENSLM  329 (727)
Q Consensus       313 ~la~~~~~~g~~~~A~~  329 (727)
                      .+++++..++++.+...
T Consensus       332 ~vAN~LNALSKWp~~~~  348 (2316)
T PRK09169        332 AVANALNALSKWPDEEA  348 (2316)
T ss_pred             HHHHHHHHHhcCCCcHH
Confidence            35555555555544433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.76  E-value=5.6  Score=41.27  Aligned_cols=72  Identities=14%  Similarity=0.043  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (727)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (727)
                      ++..|.+++..+|+|..|++.++-.---.+.++..-.+-...+++.+|.+|+..++|.+|++.|...+-...
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~  195 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ  195 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999998765322212223233345667889999999999999999999998876543

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.54  E-value=9.6  Score=28.98  Aligned_cols=51  Identities=20%  Similarity=0.095  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (727)
                      .+..++..|...-..|+ +++|+.+|.+|+..+-......+++.....+...
T Consensus         5 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k   55 (75)
T cd02678           5 KAIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESIRAK   55 (75)
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            34567788888888887 9999999999999998876655665544444433

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=82.28  E-value=1.9e+02  Score=38.77  Aligned_cols=138  Identities=16%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      .+.+....|.+....|-++.++..+.+...+-     ...-.+...-+..-+.+|....      ..+..+++.....--
T Consensus      2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytlp-----~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sTNl 2803 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTLP-----NVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIESTNL 2803 (3550)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhcccH
Confidence            34555566666667777777766666655441     1111111112222233343332      223333333332200


Q ss_pred             ---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh----CC----HHHHHH
Q 004848          553 ---QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----YS----INEAVE  621 (727)
Q Consensus       553 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~----~~~A~~  621 (727)
                         .....+..+...|..+.+.|+.++|-..|..|+++...        ...+|...|.....+    +.    -..|+.
T Consensus      2804 ~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~--------l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avs 2875 (3550)
T KOG0889|consen 2804 MYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG--------LGKAWAEWGKYLDNRFNKEPVNISFACNAVS 2875 (3550)
T ss_pred             HHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhccCcccHHHHHHHH
Confidence               11234667778899999999999999999999998543        345666555544321    11    234566


Q ss_pred             HHHHHHHH
Q 004848          622 LFEEARSI  629 (727)
Q Consensus       622 ~~~~al~~  629 (727)
                      +|-+|...
T Consensus      2876 CyLqA~~~ 2883 (3550)
T KOG0889|consen 2876 CYLQAARL 2883 (3550)
T ss_pred             HHHHHhcc
Confidence            56666554

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=81.78  E-value=97  Score=34.92  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=15.8

Q ss_pred             HHHHHHHcCChhHHHHHHHH
Q 004848          271 IAAIYCSLGQYNEAIPVLEQ  290 (727)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~  290 (727)
                      ...+++-.|+|+.|+.++-+
T Consensus       264 Yf~~LlLtgqFE~AI~~L~~  283 (613)
T PF04097_consen  264 YFQVLLLTGQFEAAIEFLYR  283 (613)
T ss_dssp             HHHHHHHTT-HHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHh
Confidence            34567788999999999988

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=81.74  E-value=13  Score=28.45  Aligned_cols=49  Identities=20%  Similarity=0.160  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  269 (727)
                      .+..+...|...-..|+ +++|+.+|.+|++.+.......+++.....+.
T Consensus         7 ~A~~li~~Av~~d~~g~-~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~   55 (77)
T smart00745        7 KAKELISKALKADEAGD-YEEALELYKKAIEYLLEGIKVESDSKRREAVK   55 (77)
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            34566778888888887 99999999999999988766666555444333

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.88  E-value=5.7  Score=39.75  Aligned_cols=67  Identities=9%  Similarity=0.067  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004848          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC  373 (727)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  373 (727)
                      .+.-+...|+-.+.++++++|...|..|..+...++|..+.....+++..|..++..+++..+.-..
T Consensus        40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n  106 (400)
T KOG4563|consen   40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN  106 (400)
T ss_pred             HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3455788999999999999999999999999999999999999999999999999988877665443

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.71  E-value=4.3  Score=40.54  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848          643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                      .-+...|+-...++++++|...|..|..+...++|..|.++..+++..|..++..++.+.++
T Consensus        42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V  103 (400)
T KOG4563|consen   42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV  103 (400)
T ss_pred             HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567788899999999999999999999999999999999999999999999999988776

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.68  E-value=13  Score=39.96  Aligned_cols=49  Identities=20%  Similarity=0.161  Sum_probs=35.5

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (727)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (727)
                      ..+.|+++.|..+..++             +...-|..||.+....+++..|.+++.++.++
T Consensus       647 al~lgrl~iA~~la~e~-------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~  695 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEA-------------NSEVKWRQLGDAALSAGELPLASECFLRARDL  695 (794)
T ss_pred             hhhcCcHHHHHHHHHhh-------------cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence            34566666666554432             23355788999999999999999999988654

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=80.61  E-value=89  Score=33.75  Aligned_cols=73  Identities=14%  Similarity=0.132  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          557 VAGIEAQMGVMYYML--GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       557 ~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                      +..++.+||.+-...  ..-..++.+|.+|+...+......+.   .-|..+|-.|++.+++.+|+..+-+|-...+.
T Consensus       276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~  350 (618)
T PF05053_consen  276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK  350 (618)
T ss_dssp             -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred             CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555544322  23456789999999999988776543   46777899999999999999999999877554

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.57  E-value=2.4  Score=28.25  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          687 KRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       687 ~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                      .+.||.+|..+|+.+.|. ..+++++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar-~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGAR-ELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHH-HHHHHHHHc
Confidence            468999999999999999 999999853

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	727
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		7e-10
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		8e-05
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		9e-10
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		7e-05
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		1e-08
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		1e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-05

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL   +   G++HPAVA+    LA +Y + GK
Sbjct: 41  DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK +    P ++A  L++++ + ++  + E+     ++AL+IY  
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G     VA  +  +   Y   G Y D+   +K  +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
           LN + L    +    EA  L  +A +I E+  G  HP      +NLA  Y   G+  +A 
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700
            + +  + IRE+ LG  +PDV  +   LA L +  G+ 
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA 143

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL   +   G++HPAVA+    LA +Y + GK
Sbjct: 41  DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK +    P ++A  L +++ + ++  + E+     ++AL+IY  
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G     VA  +  +   Y   G Y D+   +K  +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
           LN + L    +    EA  L  +A +I E+  G  HP      +NLA  Y   G+  +A 
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 663 EILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV 700
            + +  + IRE+ LG  +PDV  +   LA L +  G+ 
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 386 PASLEEAADRRLMGLICE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDT 441
           PA L     R L  L+ +  ++G +E A  L    L  +   +     +VA++   +   
Sbjct: 24  PARL-----RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV 78
Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           Y   ++Y +A      AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL
Sbjct: 79  YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138
Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGI 560
            I EK V G    ++A  L +++ + ++  + E+     Q+AL+IY    G     VA  
Sbjct: 139 EIREK-VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197
Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISK 587
           +  +   Y   G +  +   +K  +++
Sbjct: 198 KNNLASCYLKQGKFKQAETLYKEILTR 224

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 3/193 (1%)
Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           Y S    E A+ L ++AL+      G     VA +   + ++Y     Y D+ +   +A+
Sbjct: 37  YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 586 S-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
           + + + +G+   A     LN + +   +R    EA  L + A  I E+  G  HPD    
Sbjct: 97  AIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155
Query: 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704
            +NLA      G+ ++     +  + I + KLG  +P+V   K  LA    + G+ +  +
Sbjct: 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215
Query: 705 AQSLETLLDANSR 717
               E L  A+ R
Sbjct: 216 TLYKEILTRAHER 228

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A    ++G+ Y     YDEA   YQKAL        E +P  A  +  L + Y + G   
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDA 550
           E+  Y + AL +Y        P   A    ++ + Y    + ++AI+  QKAL++Y N+A
Sbjct: 61  EAIEYYQKALELY--------PNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111
Query: 551 PGQQS 555
             +Q+
Sbjct: 112 EAKQN 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	727
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-42
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-29
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-38
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-36
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-23
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-30
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-23
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-20
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-18
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-18
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-23
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	9e-17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-11
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	6e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-09
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	7e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	7e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	8e-04

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  158 bits (401), Expect = 2e-42
 Identities = 67/421 (15%), Positives = 132/421 (31%), Gaps = 42/421 (9%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
           + L +     C  G     +   E ++++     G E      A + QLG+ Y  L    
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
            +L  +   L + + +  +      +    L         F EA   CQ  LDI ++   
Sbjct: 65  KALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
                EA     +G +   KG          +        D                   
Sbjct: 123 KVG--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA------------------ 162

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
                A   Y++ L+        +  A    F  L + +   G  R++    E  L I +
Sbjct: 163 --LQAAVDFYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           +   G    E     +++ + Y  + E E A +  +K L +       ++  A     +G
Sbjct: 219 E--FGDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLG 274

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625
             Y +L +Y  + D     ++  + + +R     G A   +G A     + ++A+   E+
Sbjct: 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 626 ARSILEQECGPY-----HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680
              I  +            +   +   L  +Y     +      ++  +     KLG  +
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRH 392

Query: 681 P 681
            
Sbjct: 393 S 393

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  119 bits (301), Expect = 3e-29
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 30/303 (9%)

Query: 391 EAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
              +  L G      GD  A +      +     +  +    ++++   +G+ Y  L  Y
Sbjct: 8   SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLHDY 63

Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK-- 506
            +A   +   LT  +     +    A     L +     G   E+   C+  L I  +  
Sbjct: 64  AKALEYHHHDLTLAR--TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121

Query: 507 PVPGV---------------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551
              G                                E  + L+ A+   ++ L +     
Sbjct: 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL- 180

Query: 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV 611
           G ++        +G  +Y+LGN+ D+  + +  +   +  G++ +     A + +G A +
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGNAYI 238

Query: 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671
                  A E +++   +  Q              +L  TY  +   + AI+     + I
Sbjct: 239 FLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296

Query: 672 REE 674
            +E
Sbjct: 297 AQE 299

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  108 bits (271), Expect = 2e-25
 Identities = 39/261 (14%), Positives = 86/261 (32%), Gaps = 33/261 (12%)

Query: 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485
             +A    +    G+              ++ A+        E+   +++++ +L + Y 
Sbjct: 4   SMEASCLEL-ALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYF 58

Query: 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545
                 ++  Y  + L +    +        A    ++ +  + +   ++AI   Q+ L 
Sbjct: 59  YLHDYAKALEYHHHDLTLART-IGDQL--GEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115

Query: 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS--------------------FKNAI 585
           I  +   +    A     +G +Y+  G                            ++  +
Sbjct: 116 ISRELNDKVG-EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
           S + A+G+R +   G A   +G       +  +AV   E+   I  +E G         Y
Sbjct: 175 SLVTALGDRAAQ--GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEFG-DKAAERRAY 230

Query: 646 SNLAGTYDAIGRLDDAIEILE 666
           SNL   Y  +G  + A E  +
Sbjct: 231 SNLGNAYIFLGEFETASEYYK 251

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  106 bits (267), Expect = 7e-25
 Identities = 61/352 (17%), Positives = 113/352 (32%), Gaps = 42/352 (11%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +  KALE     L  A++       +           +      LG ++EAI   ++ ++
Sbjct: 62  DYAKALEYHHHDLTLARTI----GDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLD 115

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG-------------LEVQKQ 340
           I   E   +   A       LG+ Y   G+          G             ++  ++
Sbjct: 116 I-SRELNDKVGEA--RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172

Query: 341 VLG-----ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
            L            G     L   H     F +A    +  L I K+ G  A+  E    
Sbjct: 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERRAY 230

Query: 396 RLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             +G      G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A   
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDY 289

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           + K L   +  +  +          L + Y   G   ++  + E  L I  + V     E
Sbjct: 290 HLKHLAIAQ--ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE-VGDKSGE 346

Query: 515 E-----IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561
                 ++     +   Y + N +      +  +L       G++ ++  +E
Sbjct: 347 LTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENME 398

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 90.8 bits (226), Expect = 1e-19
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 23/277 (8%)

Query: 215 LDKPGLGPLLLKQARELISSGDNPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVI 271
             K    P             D  Q A++     L       +G               +
Sbjct: 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT--ALGDR----AAQGRAFGNL 193

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
              +  LG + +A+   EQ + I   E G + A  +   +  LG+ Y  LG+ E +   Y
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERR--AYSNLGNAYIFLGEFETASEYY 250

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              L + +Q+         ++C  L   +     + +A  +    L I ++        E
Sbjct: 251 KKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG--E 306

Query: 392 AADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAE------VASVDCSIGDTYLS 444
                 +G      G+H+ A+        ++    D+  E      ++ +   +G +Y +
Sbjct: 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
            +           +L   +   G  H       ++L 
Sbjct: 367 NNSIMSENTEIDSSLNGVRPKLGRRHSMENMELMKLT 403

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 9/134 (6%)

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609
            PG         A  G      G+       F+ A+     +G           +Q+G A
Sbjct: 1   GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAV----QVGTEDLKTLSAIYSQLGNA 56

Query: 610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669
               +   +A+E      ++                 NL  T   +G  D+AI   +  +
Sbjct: 57  YFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114

Query: 670 GIREE---KLGTAN 680
            I  E   K+G A 
Sbjct: 115 DISRELNDKVGEAR 128

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  146 bits (370), Expect = 3e-38
 Identities = 56/396 (14%), Positives = 125/396 (31%), Gaps = 49/396 (12%)

Query: 237 NPQKAL---ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +        +   +     + G++      + + L +     C+ G     +   + +I+
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSS------MCLELALEGERLCNAGDCRAGVAFFQAAIQ 76

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
                      L+  A + QLG+ Y  LG    ++  +   L + K +         ++ 
Sbjct: 77  ---AGTEDLRTLS--AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR--LGEAKSS 129

Query: 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413
             L        +F EA   C+  L + +  G   S  E      +G +   KG H     
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS--EGRALYNLGNVYHAKGKHLGQRN 187

Query: 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473
                                                A   YQ+ L   +     +  A 
Sbjct: 188 PGKFGDDVK-----------------------EALTRAVEFYQENLKLMR--DLGDRGAQ 222

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
                 L + Y   G  + +  + +  LRI  +   G    E     +++ + +  + + 
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIARE--FGDRAAE-RRANSNLGNSHIFLGQF 279

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
           E A +  ++ L +  +  G++   A     +G  Y +L  ++ + +     ++  + +G+
Sbjct: 280 EDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           R       A   +G A         A++  E+   +
Sbjct: 339 RIGE--ARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  143 bits (363), Expect = 2e-37
 Identities = 60/382 (15%), Positives = 131/382 (34%), Gaps = 44/382 (11%)

Query: 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363
           A A+    + LG         + +          Q+    +    +        E    A
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNS---------QQGSGSDGGSSMCLELALEGERLCNA 61

Query: 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMT 421
                   F Q A+    ++        +A    +G      GD+  A+++    L    
Sbjct: 62  GDCRAGVAFFQAAIQAGTEDLR----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
            + +      A    ++G+T   + R+DEA    ++ LT  +  +  +  +       L 
Sbjct: 118 SMNDRLG--EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR--QLGDRLSEGRALYNLG 173

Query: 482 DMYNRTGK-----------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
           ++Y+  GK                 L  +  + +  L++    +             ++ 
Sbjct: 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD-LGDRG--AQGRACGNLG 230

Query: 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584
           + Y  + + + AI+  Q+ L+I  +  G ++      + +G  +  LG + D+ + +K  
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289

Query: 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
           ++    +GER+      +   +G      +  N A+E      +I  QE G         
Sbjct: 290 LALAVELGEREVE--AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA-QELG-DRIGEARA 345

Query: 645 YSNLAGTYDAIGRLDDAIEILE 666
             +L   + AIG  + A++  E
Sbjct: 346 CWSLGNAHSAIGGHERALKYAE 367

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 83.1 bits (206), Expect = 4e-17
 Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 10/187 (5%)

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G      +  +   +             +   L        +  +    +   Q A++  
Sbjct: 22  GSGGGGTNSHDGNSQQGSG---SDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG 78

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607
            +      T++ I +Q+G  Y+ LG+Y+ +    K+ ++  +++ +R       +   +G
Sbjct: 79  TED---LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSGNLG 133

Query: 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667
                    +EA    E   ++  Q              NL   Y A G+        +F
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191

Query: 668 VVGIREE 674
              ++E 
Sbjct: 192 GDDVKEA 198

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 520 LTDVSSIYES-----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
           ++ +S+  E+     +              +  + +    S++    A  G      G+ 
Sbjct: 6   MSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGS-DGGSSMCLELALEGERLCNAGDC 64

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
                 F+ AI      G           +Q+G A       N+A++  +   ++ +   
Sbjct: 65  RAGVAFFQAAI----QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                       NL  T   +GR D+A    E
Sbjct: 121 D--RLGEAKSSGNLGNTLKVMGRFDEAAICCE 150

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  140 bits (354), Expect = 1e-36
 Identities = 59/366 (16%), Positives = 117/366 (31%), Gaps = 39/366 (10%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAG-HMQLGDTYAMLGQLEN 326
           L +     C  G     +   E ++++          L   +  + QLG+ Y  L     
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIYSQLGNAYFYLHDYAK 61

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +L  +   L + + +  +      +    L         F EA   CQ  LDI ++    
Sbjct: 62  ALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-- 117

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
             + EA     +G +   KG                                       +
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF--------------------PEDVRN 157

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   Y++ L+        +  A    F  L + +   G  R++    E  L I ++
Sbjct: 158 ALQAAVDLYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
              G    E     +++ + Y  + E E A +  +K L +       ++  A     +G 
Sbjct: 216 --FGDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGN 271

Query: 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626
            Y +L +Y  + D     ++  + + +R     G A   +G A     + ++A+   E+ 
Sbjct: 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGE--GRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 627 RSILEQ 632
             I  +
Sbjct: 330 LEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  120 bits (304), Expect = 4e-30
 Identities = 53/345 (15%), Positives = 113/345 (32%), Gaps = 40/345 (11%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           L  +   L  SGD  +  +        + ++G        L      +   Y  L  Y +
Sbjct: 8   LALEGERLCKSGDC-RAGVSFFE---AAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAK 61

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV- 341
           A+      + +   I +    A A       LG+T  +LG  + +++C    L++ +++ 
Sbjct: 62  ALEYHHHDLTLARTIGDQLGEAKA----SGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 342 ------------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
                              G++    G          V+      A    +  L +    
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN-ALQAAVDLYEENLSLVTAL 176

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTY 442
           G  A+  +      +G      G+   A+        +     D+ AE      ++G+ Y
Sbjct: 177 GDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RRAYSNLGNAY 233

Query: 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502
           + L  ++ A   Y+K L   +  + ++    A     L + Y       ++  Y    L 
Sbjct: 234 IFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291

Query: 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           I ++ +              + + Y ++   +QA+   +K L+I 
Sbjct: 292 IAQE-LKDRI--GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  120 bits (303), Expect = 5e-30
 Identities = 47/298 (15%), Positives = 102/298 (34%), Gaps = 36/298 (12%)

Query: 391 EAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
              +  L G      GD  A +      +     +  +    ++++   +G+ Y  L  Y
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLHDY 59

Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508
            +A   +   LT  +T    +    A     L +     G   E+   C+  L I  + +
Sbjct: 60  AKALEYHHHDLTLARTIG--DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-L 116

Query: 509 PGVPPEEIASGLTDVSSIYESM--------------------NELEQAIKLLQKALKIYN 548
                   A  L ++ ++Y +                     N L+ A+ L ++ L +  
Sbjct: 117 NDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174

Query: 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
              G ++        +G  +Y+LGN+ D+  + +  +   +  G++ +     A + +G 
Sbjct: 175 AL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGN 231

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           A +       A E +++   +  Q              +L  TY  +   + AI+   
Sbjct: 232 AYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  100 bits (250), Expect = 5e-23
 Identities = 57/295 (19%), Positives = 100/295 (33%), Gaps = 42/295 (14%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +  KALE     L  A++       +           +      LG ++EAI   ++ ++
Sbjct: 58  DYAKALEYHHHDLTLART----IGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLD 111

Query: 294 IPV-IEEGQEHALAKFAGHMQLGDTYAMLGQ--------------------LENSLMCYT 332
           I   + +    A A       LG+ Y   G+                    L+ ++  Y 
Sbjct: 112 ISRELNDKVGEARA----LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167

Query: 333 TGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
             L +    LG+     G     L   H     F +A    +  L I K+ G  A+  E 
Sbjct: 168 ENLSLVTA-LGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ER 223

Query: 393 ADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451
                +G      G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKA 282

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
              + K L   +  + ++          L + Y   G   ++  + E  L I  +
Sbjct: 283 IDYHLKHLAIAQ--ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 7/160 (4%)

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
               L           +    +   + A+++  +      T++ I +Q+G  Y+ L +Y+
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHDYA 60

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + +   + ++  R IG++       A   +G       + +EA+   +    I  +   
Sbjct: 61  KALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-- 116

Query: 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675
                      NL   Y A G+        +      + +
Sbjct: 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
                +   Y  LG++  A    ++++ +   +       A       LG+TY +L   E
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEA--QSCYSLGNTYTLLQDYE 280

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
            ++  +   L + +++        G  C  L  A+       +A  F +  L+I ++ G
Sbjct: 281 KAIDYHLKHLAIAQELKDR--IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  137 bits (347), Expect = 5e-36
 Identities = 63/342 (18%), Positives = 125/342 (36%), Gaps = 55/342 (16%)

Query: 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEV 431
               +++   G             + +   ++G +E A+      L  +   +     +V
Sbjct: 9   SGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV 68

Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A++   +   Y   ++Y +A      AL   +   G++HPAVA+    LA +Y + GK +
Sbjct: 69  ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128

Query: 492 ESKSYCENALRIYEKPVPGVPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
           E++  C+ AL I EK V G   +  ++A  L +++ + ++  + E+     Q+AL+IY  
Sbjct: 129 EAEPLCKRALEIREK-VLG--KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185

Query: 550 APGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
             G     VA  +  +   Y   G +                                  
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKF---------------------------------- 211

Query: 609 ACVQRYSINEAVELFEEARSIL-EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667
                    +A  L++E  +   E+E G    +   ++ +     +  G+  D     E 
Sbjct: 212 --------KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE- 262

Query: 668 VVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709
             G   +     +P V    + L  L +  G+     A++LE
Sbjct: 263 -YGGWYKACKVDSPTVTTTLKNLGALYRRQGKF--EAAETLE 301

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  127 bits (322), Expect = 1e-32
 Identities = 58/307 (18%), Positives = 119/307 (38%), Gaps = 9/307 (2%)

Query: 245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH- 303
                ++      G      +  LH +   Y S G+Y  A+P+ +Q++E      G +H 
Sbjct: 7   HSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP 66

Query: 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363
            +A       L   Y    + +++       L ++++ LG+  P V  T   LA  + + 
Sbjct: 67  DVA--TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 124

Query: 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMT 421
            ++ EA+  C+ AL+I +        + A     + L+C+ +G +E    +    L    
Sbjct: 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGENHPAVASVFVRL 480
                 D  VA    ++   YL   ++ +A   Y++ LT A +   G        +++  
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
            +     GK ++  S+ E            V    + + L ++ ++Y    + E A  L 
Sbjct: 245 EEREECKGKQKDGTSFGEYGGWYK---ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301

Query: 541 QKALKIY 547
           + A++  
Sbjct: 302 EAAMRSR 308

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  126 bits (319), Expect = 3e-32
 Identities = 64/366 (17%), Positives = 108/366 (29%), Gaps = 93/366 (25%)

Query: 314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373
           L   YA  G+ E ++      LE  ++  G   P V      LA  +    ++ +A    
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL-VLASMTMIANDQDAEVA 432
             AL I +                     +T G      +H  V A++            
Sbjct: 93  NDALAIRE---------------------KTLGK-----DHPAVAATLN----------- 115

Query: 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
               ++   Y    +Y EA    ++AL   +   G++HP VA     LA +    GK  E
Sbjct: 116 ----NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 493 SKSYCENALRIYEKPVPGVPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYN-D 549
            + Y + AL IY+    G  P+   +A    +++S Y    + +QA  L ++ L   +  
Sbjct: 172 VEYYYQRALEIYQT-KLG--PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228

Query: 550 APGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
             G        I           G                                    
Sbjct: 229 EFGSVDDENKPIWMHAEEREECKGKQ---------------------------------- 254

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668
                    +     E       + C    P       NL   Y   G+ + A  + E  
Sbjct: 255 --------KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304

Query: 669 VGIREE 674
           +  R++
Sbjct: 305 MRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  124 bits (313), Expect = 2e-31
 Identities = 56/270 (20%), Positives = 94/270 (34%), Gaps = 25/270 (9%)

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
                   +    G   PA       L   Y   G+   +   C+ AL   EK   G   
Sbjct: 7   HSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-TSGHDH 65

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLG 572
            ++A+ L  ++ +Y   N+ + A  LL  AL I     G+    VA     + V+Y   G
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125

Query: 573 NYSDSYDSFKNAIS-KLRAIGERKSAFFG-------VALNQMGLACVQ--RYSINEAVEL 622
            Y +       A     RA+  R+    G         LN + L C    +Y   E    
Sbjct: 126 KYKE-------AEPLCKRALEIREKVL-GKDHPDVAKQLNNLALLCQNQGKY--EEVEYY 175

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK-LGTANP 681
           ++ A  I + + GP  P+     +NLA  Y   G+   A  + + ++    E+  G+ + 
Sbjct: 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235

Query: 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETL 711
           +         E  +  G  + +   S    
Sbjct: 236 ENKPIWMHAEEREECKG--KQKDGTSFGEY 263

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIP-VIEEGQEHALAKFAGHMQLGDTYAMLGQL 324
              + +A+ Y   G++ +A  + ++ +      E G      K    M   +     G+ 
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK-PIWMHAEEREECKGKQ 254

Query: 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381
           ++             +      P V  T + L   + +  +F  A+   + A+   K
Sbjct: 255 KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  130 bits (330), Expect = 5e-34
 Identities = 62/316 (19%), Positives = 116/316 (36%), Gaps = 51/316 (16%)

Query: 398 MGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
                       +A+      L  +   +     +VA++   +   Y   ++Y EA    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
             AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL I EK V G    +
Sbjct: 67  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-VLGKFHPD 125

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNY 574
           +A  L +++ + ++  + E+     ++AL+IY    G     VA  +  +   Y   G Y
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA-RSILEQE 633
                                                      +A  L++E      E+E
Sbjct: 186 Q------------------------------------------DAETLYKEILTRAHEKE 203

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL 693
            G  + D   ++ +     ++  +  D+    E   G   +     +P V+   R L  L
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE--YGSWYKACKVDSPTVNTTLRSLGAL 261

Query: 694 LKEAGRVRSRKAQSLE 709
            +  G++    A +LE
Sbjct: 262 YRRQGKL--EAAHTLE 275

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  118 bits (298), Expect = 9e-30
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 17/287 (5%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-----ALAKFAGHMQLGDTYAMLG 322
            H        L     A+P+ +Q++E      G +H      L        L   Y    
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLN------ILALVYRDQN 57

Query: 323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382
           + + +       L ++++ LG+  P V  T   LA  + +  ++ EA+  C+ AL+I + 
Sbjct: 58  KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117

Query: 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGD 440
                  + A     + L+C+ +G  E    +    L          D  VA    ++  
Sbjct: 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNK-GENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
            YL   +Y +A   Y++ LT     + G  +     +++   +      K R+S  Y E 
Sbjct: 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237

Query: 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
                      V    + + L  + ++Y    +LE A  L   A + 
Sbjct: 238 GSWYK---ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 92.2 bits (230), Expect = 8e-21
 Identities = 50/243 (20%), Positives = 82/243 (33%), Gaps = 54/243 (22%)

Query: 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526
           G +H              +       +   C+ AL   EK   G    ++A+ L  ++ +
Sbjct: 2   GSSHH--------HHHHSSGLVPRGSAVPLCKQALEDLEK-TSGHDHPDVATMLNILALV 52

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           Y   N+ ++A  LL  AL I     G+    VA     + V+Y   G Y           
Sbjct: 53  YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY----------- 101

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
                                           EA  L + A  I E+  G +HPD     
Sbjct: 102 -------------------------------KEAEPLCKRALEIREKVLGKFHPDVAKQL 130

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           +NLA      G+ ++        + I   +LG  +P+V   K  LA    + G+   + A
Sbjct: 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY--QDA 188

Query: 706 QSL 708
           ++L
Sbjct: 189 ETL 191

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 56.4 bits (137), Expect = 8e-09
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSI-EIPVIEEGQEHALAKFAGHMQ-LGDTYAMLGQLE 325
            + +A+ Y   G+Y +A  + ++ +      E G  +             +      +  
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG--DNKPIWMHAEEREESKDKRR 229

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381
           +S      G     +      P V  T R L   + +  +   A      A    K
Sbjct: 230 DSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  130 bits (329), Expect = 6e-33
 Identities = 77/478 (16%), Positives = 160/478 (33%), Gaps = 95/478 (19%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
            ++ A     +G + + A    ++  +         P  +    L ++++I+    + + 
Sbjct: 2   PMELAHREYQAG-DFEAAERHCMQLWRQE-------P--DNTGVLLLLSSIHFQCRRLDR 51

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
           +      +I+  P        A A    +  LG+ Y   GQL+ ++  Y   L +     
Sbjct: 52  SAHFSTLAIKQNP------LLAEA----YSNLGNVYKERGQLQEAIEHYRHALRL----- 96

Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402
               P   +    LA A V A     A +    AL  + D            R  +G + 
Sbjct: 97  ---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL--------YCVRSDLGNLL 145

Query: 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462
           +  G  E A    + A    I    +   A    ++G  + +      A   ++KA+   
Sbjct: 146 KALGRLEEAKACYLKA----IETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAV--- 196

Query: 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522
                   P     ++ L ++         + +    AL +   P         A    +
Sbjct: 197 -----TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SP-------NHAVVHGN 242

Query: 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDS 580
           ++ +Y     ++ AI   ++A+++    P         +A   +       G+ +++ D 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFP---------DAYCNLANALKEKGSVAEAEDC 293

Query: 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640
           +  A+                +LN +     ++ +I EAV L+ +A  +         P+
Sbjct: 294 YNTAL-------RLCPTHAD-SLNNLANIKREQGNIEEAVRLYRKALEV--------FPE 337

Query: 641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
               +SNLA      G+L +A+   +  + I        +P   D    +   LKE  
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  108 bits (272), Expect = 2e-25
 Identities = 58/393 (14%), Positives = 124/393 (31%), Gaps = 76/393 (19%)

Query: 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369
           G M+L       G  E +                  +P        L+  H Q  +   +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRS 52

Query: 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQD 428
             F  +A+  +           A     +G + + +G  + A+EH   A    +      
Sbjct: 53  AHFSTLAIKQNPLL--------AEAYSNLGNVYKERGQLQEAIEHYRHA----LRLKPDF 100

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
            +      ++    ++    + A  AY  AL        + +P +  V   L ++    G
Sbjct: 101 IDGYI---NLAAALVAAGDMEGAVQAYVSAL--------QYNPDLYCVRSDLGNLLKALG 149

Query: 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548
           +L E+K+    A+    +P         A   +++  ++ +  E+  AI   +KA+ +  
Sbjct: 150 RLEEAKACYLKAIET--QP-------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 549 DAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606
           +           +A   +G +      +  +  ++  A+               V    +
Sbjct: 201 NFL---------DAYINLGNVLKEARIFDRAVAAYLRAL-------SLSPNHA-VVHGNL 243

Query: 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                ++  I+ A++ +  A  +         P     Y NLA      G + +A +   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYN 295

Query: 667 FVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
             + +         P   D    LA + +E G 
Sbjct: 296 TALRL--------CPTHADSLNNLANIKREQGN 320

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  111 bits (278), Expect = 2e-26
 Identities = 46/360 (12%), Positives = 123/360 (34%), Gaps = 24/360 (6%)

Query: 322 GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381
             + ++ +      +  +Q+  E D  +      +   H   L + E  K       + +
Sbjct: 26  FSVPDAEILKAEVEQDIQQM--EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTE 83

Query: 382 DNGSPASLEEAADRRL-------MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
              +  + ++     L        G+    + ++  A+ +   A   +     D E A  
Sbjct: 84  LLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF 143

Query: 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494
              + + Y  + +   + +   +AL  ++ +   +   + S+FV +A  Y+      ++ 
Sbjct: 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV-IAGNYDDFKHYDKAL 202

Query: 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554
            + E AL +    +       IA  L ++++ Y+   + + A++  QKA K+  +     
Sbjct: 203 PHLEAALELAMD-IQNDR--FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614
             +  +   +       G    ++   +  +  + A   +      + L  +    V   
Sbjct: 260 --LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317

Query: 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674
            I++ +  FE+            H        + A  +++    + A      V+  +E+
Sbjct: 318 KIHDLLSYFEKKN---------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  110 bits (276), Expect = 3e-26
 Identities = 53/328 (16%), Positives = 107/328 (32%), Gaps = 22/328 (6%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFE-IGANGKPSLELVMC--LHVIAAIYCSLGQ 280
           L+    +L+     P K         +  E I    K    L+    L           +
Sbjct: 57  LMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKE 116

Query: 281 YNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339
           Y EAI    ++ +  P + +  E A      H ++ + Y  + Q   S+      L++ +
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399
                   R  ++   +A  +     + +A    + AL++  D  +      A     + 
Sbjct: 173 NHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF--IAISLLNIA 229

Query: 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
              +  GD + A+EH    +  +        +  V   +  T     +  +A    ++ L
Sbjct: 230 NSYDRSGDDQMAVEHF-QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519
                   + +  +      L  +Y  T   R+      + L  +EK         I + 
Sbjct: 289 DHITARSHKFYKELFLF---LQAVYKETVDERK----IHDLLSYFEK---KNLHAYIEAC 338

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIY 547
               ++++ES    EQA    +K LK  
Sbjct: 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQ 366

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  100 bits (251), Expect = 6e-23
 Identities = 38/269 (14%), Positives = 78/269 (28%), Gaps = 15/269 (5%)

Query: 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK- 463
           +     A          +   ++D ++      +   +  +  Y E G  Y    T  + 
Sbjct: 25  QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84

Query: 464 ------TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
                   K                      +  E+  Y   A +     V      E A
Sbjct: 85  LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDI--EKA 141

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
                V+  Y  M +   ++  + +AL IY + P            +   Y    +Y  +
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637
               + A+     I   +     ++L  +  +  +      AVE F++A  +  ++    
Sbjct: 202 LPHLEAALELAMDIQNDRF--IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
            P        L+ T    G+   A + +E
Sbjct: 260 LPKV---LFGLSWTLCKAGQTQKAFQFIE 285

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 92.2 bits (229), Expect = 4e-20
 Identities = 26/270 (9%), Positives = 78/270 (28%), Gaps = 17/270 (6%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
              +A+       ++ +        +E       +A  Y  + Q + ++  + Q+++I  
Sbjct: 116 EYVEAIGYYR---EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
                            +   Y      + +L      LE+   +  +    +  +   +
Sbjct: 173 NHPLYSIRTI--QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND--RFIAISLLNI 228

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
           A ++ ++     A +  Q A  + ++               +       G  + A + + 
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPD---LLPKVLFGLSWTLCKAGQTQKAFQFI- 284

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
              +  I          +   +   Y       +        L+ F+  K   H  + + 
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERK----IHDLLSYFE--KKNLHAYIEAC 338

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A ++  +    ++ ++    L+  E 
Sbjct: 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQED 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 87.9 bits (218), Expect = 8e-19
 Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 15/235 (6%)

Query: 236 DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295
                ++   L+A   ++   +   S+  +  L VIA  Y     Y++A+P LE ++E+ 
Sbjct: 155 KQTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL- 211

Query: 296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355
            ++   +  +A     + + ++Y   G  + ++  +    +V ++ + +  P+       
Sbjct: 212 AMDIQNDRFIAIS--LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK---VLFG 266

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           L+    +A Q  +A +F +  LD           E     + +      +      L + 
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
                     +  A + +   S    + S   +++A   Y+K L A +       
Sbjct: 327 -------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 37/264 (14%), Positives = 71/264 (26%), Gaps = 16/264 (6%)

Query: 420 MTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVA--S 475
              I + +   V      I + Y  +      +A     +     +  + +    +    
Sbjct: 4   SQAIPSSR---VGV---KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSL 57

Query: 476 VFVRLADM--YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
           +  R   M  Y   GK   ++      L   E P   +        L           E 
Sbjct: 58  MCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEY 117

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
            +AI   ++A K            A    ++   YY +     S      A+   +    
Sbjct: 118 VEAIGYYREAEKELPFVSDDIE-KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
                   +L  +          ++A+   E A  +                 N+A +YD
Sbjct: 177 YSIRT-IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYD 233

Query: 654 AIGRLDDAIEILEFVVGIREEKLG 677
             G    A+E  +    +  EK+ 
Sbjct: 234 RSGDDQMAVEHFQKAAKVSREKVP 257

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  110 bits (277), Expect = 2e-26
 Identities = 45/320 (14%), Positives = 109/320 (34%), Gaps = 20/320 (6%)

Query: 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420
           ++ ++  E  +   + L+I K       L E       G+    + ++ +A++    A  
Sbjct: 72  LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131

Query: 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480
            +I      E A     + ++Y  + +   +    ++A   +K ++  N   +    +  
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL-F 190

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
           A  +    +  ++ S+ + A  + E       P+ +   L ++     S ++ E AI   
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247

Query: 541 QKALKIY---NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597
           ++A+ ++   N  P        I      ++Y LG    +++     ++  +  G+    
Sbjct: 248 KRAIAVFEESNILPSLPQAYFLI----TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303

Query: 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
                L  + L+     +I    +  E             + D      ++A  Y     
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESKML---------YADLEDFAIDVAKYYHERKN 354

Query: 658 LDDAIEILEFVVGIREEKLG 677
              A      V  +R+   G
Sbjct: 355 FQKASAYFLKVEQVRQLIQG 374

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  102 bits (256), Expect = 1e-23
 Identities = 39/328 (11%), Positives = 107/328 (32%), Gaps = 17/328 (5%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
           + L  +  +     +    +  L   I+    ++ +   L ++  +   G       +  
Sbjct: 64  LMLEYLEPLEKMRIEEQPRLSDLLLEIDK---KQARLTGLLEYYFNFFRGMYELDQREYL 120

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
           +++  +         V    +    E    ++E++    Q   +  + + A +I+K++ +
Sbjct: 121 SAIKFFKKAESKLIFVKDRIE--KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
             ++       L          +E A+ H   A     A  Q   +     +IG    S 
Sbjct: 179 Y-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
           S+Y++A   +++A+  F+  +    P++   +  +  ++ + GK+ ++  Y    +   +
Sbjct: 238 SQYEDAIPYFKRAIAVFE--ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           K           S         +S+       + +Q             + +      + 
Sbjct: 296 K----AGDVIYLSEF----EFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGE 593
             Y+   N+  +   F       + I  
Sbjct: 347 KYYHERKNFQKASAYFLKVEQVRQLIQG 374

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 16/270 (5%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
               A++      K+       K  +E       ++  Y  + Q   ++    Q+ EI  
Sbjct: 118 EYLSAIKFFK---KAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
             E     L +   H      +  L Q E+++  +     + +    +    +G T   +
Sbjct: 175 EHEAYNIRLLQ--CHSLFATNFLDLKQYEDAISHFQKAYSMAEA-EKQ-PQLMGRTLYNI 230

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
                   Q+ +A  + + A+ + +++    S        L+  I    G  + A E+  
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPS--LPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
              M       D    S    +   YLS    +    A Q      +      +  +   
Sbjct: 289 KG-MAYSQKAGDVIYLSEFEFLKSLYLSGPDEE----AIQGFFDFLE--SKMLYADLEDF 341

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506
            + +A  Y+     +++ +Y     ++ + 
Sbjct: 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 28/234 (11%), Positives = 82/234 (35%), Gaps = 14/234 (5%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
               +++ A +A + ++   +   ++ L+ C  + A  +  L QY +AI   +++  +  
Sbjct: 158 QTYFSMDYARQAYEIYK--EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM-A 214

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
             E Q   + +      +G       Q E+++  +   + V ++      P + +    +
Sbjct: 215 EAEKQPQLMGRT--LYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLI 270

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
            + H +  +  +A ++    +   +  G        ++   +  +  +  D EA      
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDV---IYLSEFEFLKSLYLSGPDEEAIQGFFD 327

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
                + +    A++      +   Y     + +A   + K     +  +G   
Sbjct: 328 F----LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  105 bits (265), Expect = 3e-26
 Identities = 23/207 (11%), Positives = 61/207 (29%), Gaps = 7/207 (3%)

Query: 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427
           EA  +             PA+   +  R ++G +       + A             +  
Sbjct: 4   EAHDYALAERQAQALLAHPAT--ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61

Query: 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT 487
                     +G        +D A   + +      +   E+  A ++    +A +    
Sbjct: 62  HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHF 120

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G L  ++   E +L   ++          A     +  + +    L +A +   +A  I+
Sbjct: 121 GDLAGARQEYEKSLVYAQQA--DDQVAI-ACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNY 574
            +       V  +  ++  + +   ++
Sbjct: 178 AEL-EDSEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  101 bits (253), Expect = 1e-24
 Identities = 24/209 (11%), Positives = 63/209 (30%), Gaps = 16/209 (7%)

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           EA         A       +    +     L  +Y    +  E+++  +   +  +K   
Sbjct: 4   EAHDYALAERQAQA--LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-- 59

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
           G    E    L  V  +       + A +   +  ++    P      +    ++  +  
Sbjct: 60  GDHTAE-HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
             G+ + +   ++ ++   +   ++ +     A   +G    Q  ++ EA + +  AR I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAI--ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRL 658
             +         L     +      +  L
Sbjct: 177 FAE---------LEDSEAVNELMTRLNGL 196

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 13/200 (6%)

Query: 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
           A ++ +            A  +     +G  Y  + R+DEA  ++Q      +  K  +H
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ--KSGDH 62

Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
            A      ++  +    G    ++        +         P   ++   +V+++    
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS--LPEDPLAASANAYEVATVALHF 120

Query: 531 NELEQAIKLLQKALKIY---NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            +L  A +  +K+L      +D        A     +G +     N  ++   +  A   
Sbjct: 121 GDLAGARQEYEKSLVYAQQADDQVAI----ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

Query: 588 LRAIGERKSAFFGVALNQMG 607
              + + ++      + ++ 
Sbjct: 177 FAELEDSEAV--NELMTRLN 194

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 28/210 (13%), Positives = 70/210 (33%), Gaps = 11/210 (5%)

Query: 240 KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299
           +A + AL   ++  + A+            ++  +Y  + +++EA    +   +    + 
Sbjct: 4   EAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKS 59

Query: 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359
           G   A  +     Q+G    M G  + +  C+    E+    L E           +A  
Sbjct: 60  GDHTAEHR--ALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATV 116

Query: 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA- 418
            +     + A++  + +L   +      +   A   R +G + + + +   A +H + A 
Sbjct: 117 ALHFGDLAGARQEYEKSLVYAQQADDQVA--IACAFRGLGDLAQQEKNLLEAQQHWLRAR 174

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
            +     D    V  +   +         +
Sbjct: 175 DIFAELEDS-EAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 7/149 (4%)

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
           +A        +         +T +G    +G +Y  +  + ++  SF+    + +  G+ 
Sbjct: 4   EAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62

Query: 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654
            +     AL+Q+G+      + + A   F E R +L                 +A     
Sbjct: 63  TAE--HRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALH 119

Query: 655 IGRLDDAIEILEFVVGIREE---KLGTAN 680
            G L  A +  E  +   ++   ++  A 
Sbjct: 120 FGDLAGARQEYEKSLVYAQQADDQVAIAC 148

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  104 bits (262), Expect = 9e-24
 Identities = 54/394 (13%), Positives = 111/394 (28%), Gaps = 60/394 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           I+A Y S G   + I    +++EI P      +H+ A     ++       LG   +++ 
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKP------DHSKA----LLRRASANESLGNFTDAMF 114

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
             +             +P +       A   +      +  +       +   N S AS 
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR----GSQVLPSNTSLASF 170

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
               D  L      T  +++ A   L  A    +     A       +      S   Y 
Sbjct: 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDA----LQRLYSATDEGYLVANDLLTKSTDMYH 226

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
               A                   A         +     L +++   + ++ ++     
Sbjct: 227 SLLSANTVDD--------PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--- 275

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
                   +    ++         ++  K  QKA+ +                  G MY+
Sbjct: 276 -------PNSYIFLALTLADKENSQEFFKFFQKAVDL-------NPEYPPTYYHRGQMYF 321

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           +L +Y ++ + F+ A S        ++ +      Q+     ++    E+   F E +  
Sbjct: 322 ILQDYKNAKEDFQKAQSL-----NPENVY---PYIQLACLLYKQGKFTESEAFFNETKLK 373

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                    P    V +  A      G  D AI+
Sbjct: 374 --------FPTLPEVPTFFAEILTDRGDFDTAIK 399

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  104 bits (260), Expect = 2e-23
 Identities = 53/423 (12%), Positives = 123/423 (29%), Gaps = 66/423 (15%)

Query: 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338
           G +    P + Q   +    + Q +A+         G+ +        ++  Y   +E+ 
Sbjct: 1   GSHMNGEPDIAQLKGLS-PSQRQAYAVQ----LKNRGNHFFTAKNFNEAIKYYQYAIEL- 54

Query: 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
                  DP        ++  ++      +  +F   AL+I  D+       +A  RR  
Sbjct: 55  -------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS------KALLRR-- 99

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
               E+ G+   A+  L + S   +  D D               ++   +E     +  
Sbjct: 100 ASANESLGNFTDAMFDLSVLS---LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156

Query: 459 LTAFKTNKGENHPAVASVFVRLA-DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
            +    +              L     N +     + +   +AL+               
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD-------- 208

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
                      + + L ++  +    L         +   A      G+ +++  N  D+
Sbjct: 209 ------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262

Query: 578 YDSFKNAIS-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
               + +I+                +   + L    + +  E  + F++A  +       
Sbjct: 263 QVLLQESINLHPTPN----------SYIFLALTLADKENSQEFFKFFQKAVDL------- 305

Query: 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
            +P+    Y +    Y  +    +A E  +    +        NP+      +LA LL +
Sbjct: 306 -NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYK 356

Query: 697 AGR 699
            G+
Sbjct: 357 QGK 359

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 46/439 (10%), Positives = 109/439 (24%), Gaps = 94/439 (21%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK---------------FAGHMQLG 315
            A+   SLG + +A+  L         +      + +                    +  
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 316 DTYAMLGQLENSLMCYTTGLEVQ---------------KQVLGETDPRVGETCRYLAEAH 360
                   L +    + + LEV                   L        E      +  
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL 218

Query: 361 VQAL-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419
            ++   +        +   + ++         A      G+    K +   A   L  + 
Sbjct: 219 TKSTDMYHSLLSANTVDDPLRENA--------ALALCYTGIFHFLKNNLLDAQVLLQES- 269

Query: 420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479
              I              +  T        E    +QKA+        + +P     +  
Sbjct: 270 ---INLHPTPNSY---IFLALTLADKENSQEFFKFFQKAV--------DLNPEYPPTYYH 315

Query: 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539
              MY      + +K   + A  +   P       E       ++ +     +  ++   
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSL--NP-------ENVYPYIQLACLLYKQGKFTESEAF 366

Query: 540 LQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAI----------SK 587
             +    +   P         E       +    G++  +   +  A             
Sbjct: 367 FNETKLKFPTLP---------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417

Query: 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647
           +  +  + +     +         +++  N A++L  +A  +         P +      
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKF--NAAIKLLTKACEL--------DPRSEQAKIG 467

Query: 648 LAGTYDAIGRLDDAIEILE 666
           LA     + ++D+AIE+ E
Sbjct: 468 LAQLKLQMEKIDEAIELFE 486

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 67/492 (13%), Positives = 127/492 (25%), Gaps = 118/492 (23%)

Query: 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELAL--- 246
             A   PM +R       + ++E      G G  +L     L S        LE++    
Sbjct: 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185

Query: 247 -----RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301
                 A            S      L     +  S   Y+  +        +      +
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL-----RE 240

Query: 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361
             ALA        G  + +   L ++ +     + +         P    +  +LA    
Sbjct: 241 NAALA----LCYTGIFHFLKNNLLDAQVLLQESINL--------HPTP-NSYIFLALTLA 287

Query: 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421
                 E  KF Q A+D+                           ++     H       
Sbjct: 288 DKENSQEFFKFFQKAVDL-------------------------NPEYPPTYYHR------ 316

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
                            G  Y  L  Y  A   +QKA           +P     +++LA
Sbjct: 317 -----------------GQMYFILQDYKNAKEDFQKAQ--------SLNPENVYPYIQLA 351

Query: 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
            +  + GK  ES+++          P        +    T  + I     + + AIK   
Sbjct: 352 CLLYKQGKFTESEAFFNETKLK--FP-------TLPEVPTFFAEILTDRGDFDTAIKQYD 402

Query: 542 KALKIYNDAPG---------QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            A ++                ++T+   ++           ++ +      A        
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC------- 455

Query: 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
           E        A   +    +Q   I+EA+ELFE++  +                     T+
Sbjct: 456 ELDPRSE-QAKIGLAQLKLQMEKIDEAIELFEDSAIL--------ARTMDEKLQAT--TF 504

Query: 653 DAIGRLDDAIEI 664
               ++   +  
Sbjct: 505 AEAAKIQKRLRA 516

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 35/363 (9%), Positives = 95/363 (26%), Gaps = 55/363 (15%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
            K+ ++      +  +    +      + L      +       +A  +L++SI +    
Sbjct: 219 TKSTDMYHSLLSANTVDDPLRE--NAALALCYTGIFHFLKNNLLDAQVLLQESINL---- 272

Query: 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358
                  +    ++ L  T A     +     +   +++        +P    T  +  +
Sbjct: 273 --HPTPNS----YIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQ 318

Query: 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418
            +     +  A++  Q A  ++ +N           +     +   +G    +       
Sbjct: 319 MYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQL--ACLLYKQGKFTESEAFFNET 370

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT------AFKTNKGE--NH 470
                       +  V     +       +D A   Y  A              G     
Sbjct: 371 ----KLKFPT--LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424

Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
             + +             K   +      A  +   P               ++ +   M
Sbjct: 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DP-------RSEQAKIGLAQLKLQM 475

Query: 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIE-AQMGVMYYMLGNYSDSYDSFKNAISKLR 589
            ++++AI+L + +  +   A      +     A+   +   L          +  +++ R
Sbjct: 476 EKIDEAIELFEDSAIL---ARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYR 532

Query: 590 AIG 592
           A G
Sbjct: 533 AKG 535

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  102 bits (256), Expect = 3e-23
 Identities = 61/430 (14%), Positives = 125/430 (29%), Gaps = 62/430 (14%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
           +++A +    GQ   A+  L ++ E+   E   +  +            Y  +G+L +  
Sbjct: 55  NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSP 386
           +       V ++          E         ++    Q   A+   + AL+    N   
Sbjct: 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI--GDTYLS 444
            S    A  RL     +     + A++ L  A    I  + D +   V  ++        
Sbjct: 175 TSGLAIASYRL-----DNWPPSQNAIDPLRQA----IRLNPDNQYLKVLLALKLHKMREE 225

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
                E     ++AL        E  P V  V    A  Y R  +  ++    + AL   
Sbjct: 226 GEEEGEGEKLVEEAL--------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

Query: 505 EKPVPGVPPEEI-----------ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553
                   P              A     ++     M    + ++L+  A+     A   
Sbjct: 278 --------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329

Query: 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-Q 612
              +  + + +  ++ +   Y ++   F+   SK     E       +   + G   + Q
Sbjct: 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQ 384

Query: 613 RYSINEAVELFEEARSI----------------LEQECGPYHPDTLGVYSNLAGTYDAIG 656
               ++A+  F E   I                + +     +         LA   +   
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444

Query: 657 RLDDAIEILE 666
           ++  A E  E
Sbjct: 445 KMQQADEDSE 454

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 96.5 bits (240), Expect = 3e-21
 Identities = 57/395 (14%), Positives = 118/395 (29%), Gaps = 66/395 (16%)

Query: 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE- 336
           L +   ++   E  +      + +E    K      L     + GQ E +L C     E 
Sbjct: 24  LMEGENSLDDFEDKVFYRTEFQNREF---KATMCNLLAYLKHLKGQNEAALECLRKAEEL 80

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
           +Q++   + + R   T    A  +    + S+ Q +      + +   SP  +E      
Sbjct: 81  IQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140

Query: 397 LMG--LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---SRYDEA 451
             G   +      +E A      A    +         +    +      L        A
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKA----LEKKPKNPEFT--SGLAIASYRLDNWPPSQNA 194

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
               ++A+        +N      + ++L  M     +  E +   E AL     P    
Sbjct: 195 IDPLRQAI----RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--AP---- 244

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML 571
               +   L   +  Y   +E ++AI+LL+KAL+   +                 ++  +
Sbjct: 245 ---GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA--------------YLHCQI 287

Query: 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631
           G        ++  + ++  + E         L            I  AV   ++A     
Sbjct: 288 GC------CYRAKVFQVMNLRENGMYGKRKLLEL----------IGHAVAHLKKADEA-- 329

Query: 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                 + +   V S LA  +    + ++A    +
Sbjct: 330 ------NDNLFRVCSILASLHALADQYEEAEYYFQ 358

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 40/337 (11%), Positives = 90/337 (26%), Gaps = 74/337 (21%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN 326
           L + +    +      AI  L Q+I + P      ++   K    ++L        +   
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNP------DNQYLKVLLALKLHKMREEGEEEGE 231

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
                   LE          P V +  R  A+ + +  +  +A +  + AL+   +N   
Sbjct: 232 GEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--- 280

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
                A     +G     K      L    +     +                     L 
Sbjct: 281 -----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL---------------------LE 314

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A    +KA         E +  +  V   LA ++    +  E++ Y +        
Sbjct: 315 LIGHAVAHLKKAD--------EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA---- 562
                P  +    L   +     M   ++AI    + +KI   +  ++     ++     
Sbjct: 367 -----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM 421

Query: 563 -------------QMGVMYYMLGNYSDSYDSFKNAIS 586
                         +  +  +      + +  +  + 
Sbjct: 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630
           L    +S D F++ +        +   F     N +      +     A+E   +A  ++
Sbjct: 24  LMEGENSLDDFEDKVFY--RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81

Query: 631 EQECGPY-HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689
           +QE        +L  + N A  Y  +GRL D    ++ V  + E+       +  +    
Sbjct: 82  QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141

Query: 690 LAELLKEAGRVRSRKA 705
                 + G  ++ +A
Sbjct: 142 EGWTRLKCGGNQNERA 157

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  102 bits (256), Expect = 8e-23
 Identities = 54/451 (11%), Positives = 130/451 (28%), Gaps = 72/451 (15%)

Query: 236 DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI- 294
            NP +  E         + G   + S+      ++   +Y +L  ++ A    ++++ + 
Sbjct: 176 TNPFRKDEKNANKLLMQDGGIKLEASM-----CYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 295 -----------------PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
                               E      L       +       L  L+ +   +   L  
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 338 QKQVLG--ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
            +  L       +  +     A+      +F +        L+I   N            
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN--------LDVY 342

Query: 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
            L        G+           S  ++    +  V     ++G  YL +++  EA   +
Sbjct: 343 PLHLASLHESGEKNKLYL----ISNDLVDRHPEKAVTW--LAVGIYYLCVNKISEARRYF 396

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
            K+            P     ++  A  +   G+  ++ S    A R+            
Sbjct: 397 SKSS--------TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQ-------G 439

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
                  +   +  +  +  A + LQ +  ++   P     +   E  +GV+ +   +  
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP-----LLLNE--LGVVAFNKSDMQ 492

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + + F+NA+  ++     +  +       +G A  +    + A++   +   +      
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWA-ATWANLGHAYRKLKMYDAAIDALNQGLLL------ 545

Query: 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
               +   V++ +A  Y        AI  L 
Sbjct: 546 --STNDANVHTAIALVYLHKKIPGLAITHLH 574

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 68/496 (13%), Positives = 140/496 (28%), Gaps = 101/496 (20%)

Query: 225 LKQARELISSGDNPQKALELAL---------RAAKSFEIGANGKPSLELVMCLHVIAAIY 275
                +++    NP  A  LA          RA            S     C ++ A   
Sbjct: 104 AFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS---ACRYLAAFCL 160

Query: 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAG-------HMQLGDTYAMLGQLENSL 328
             L  +  A+ +L ++      E+     L +  G           G  Y  L   + + 
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAH----------VQALQFSEAQK----FCQ 374
            CY   L V        D +  E    L   H          V  L +S   K    F +
Sbjct: 221 ECYKEALMV--------DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

Query: 375 MALDIHKDNGSPASLEEAADRRL---------------MGLICETKGDHEAALEHLVLAS 419
               +  +  S       A+  L                      +      L       
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI- 331

Query: 420 MTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478
              +  D  + +V  +      +       ++        +        + HP  A  ++
Sbjct: 332 ---LEIDPYNLDVYPL---HLASLHESGEKNKLYLISNDLV--------DRHPEKAVTWL 377

Query: 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538
            +   Y    K+ E++ Y   +  +   P       +        +  +    E +QAI 
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTM--DP-------QFGPAWIGFAHSFAIEGEHDQAIS 428

Query: 539 LLQKALKIYNDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
               A +++                  +G+ +  LGN   + +  +++ +          
Sbjct: 429 AYTTAARLFQGTH---------LPYLFLGMQHMQLGNILLANEYLQSSYAL--------F 471

Query: 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656
            +  + LN++G+    +  +  A+  F+ A  +  ++           ++NL   Y  + 
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQSNEKPWAATWANLGHAYRKLK 530

Query: 657 RLDDAIEILEFVVGIR 672
             D AI+ L   + + 
Sbjct: 531 MYDAAIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 46/411 (11%), Positives = 119/411 (28%), Gaps = 66/411 (16%)

Query: 243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302
           E  L    ++   +        +  L+++     S             SI        ++
Sbjct: 251 EWDLVLKLNYSTYSKEDA--AFLRSLYMLKLNKTSHEDELRRAEDYLSSING-----LEK 303

Query: 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362
            +       +   DT  +  +  + L           ++L E DP   +       +  +
Sbjct: 304 SSDL----LLCKADTLFVRSRFIDVLAIT-------TKIL-EIDPYNLDVYPLHLASLHE 351

Query: 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422
           + + ++        +D H +     +         +G+          A  +   +  + 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEK--AVTWL------AVGIYYLCVNKISEARRYFSKS--ST 401

Query: 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           +    D +          ++     +D+A  AY  A   F+             ++ L  
Sbjct: 402 M----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT--------HLPYLFLGM 449

Query: 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
            + + G +  +  Y +++  +                L ++  +  + ++++ AI   Q 
Sbjct: 450 QHMQLGNILLANEYLQSSYAL--FQ-------YDPLLLNELGVVAFNKSDMQTAINHFQN 500

Query: 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602
           AL +       +   A   A +G  Y  L  Y  + D+    +     +    +      
Sbjct: 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL----LLSTNDAN----V 552

Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
              + L  + +     A+    E+ +I         P+ +     L    +
Sbjct: 553 HTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 83.3 bits (206), Expect = 9e-17
 Identities = 48/467 (10%), Positives = 117/467 (25%), Gaps = 90/467 (19%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE-----GQEH-ALAKFAGHMQL-GDTYAM 320
              +A +YC  G Y  A  +L +                    L  + G + L G+T   
Sbjct: 120 AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
               +N+         ++ +            C    + +     F  A++  + AL + 
Sbjct: 180 RKDEKNANKLLMQDGGIKLE---------ASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440
                       A  +L+     T  +    +  L  ++     + +DA        +  
Sbjct: 231 AKCYE-------AFDQLVSNHLLTADEEWDLVLKLNYST----YSKEDAAFLRSLYMLKL 279

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500
              S          Y  ++   + +        + + +  AD      +  +  +     
Sbjct: 280 NKTSHEDELRRAEDYLSSINGLEKS--------SDLLLCKADTLFVRSRFIDVLAITTKI 331

Query: 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560
           L I                     +      E  +   +    +  + +           
Sbjct: 332 LEIDPY---------NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA--------- 373

Query: 561 EA--QMGVMYYMLGNYSDSYDSFKNAISK--------------LRAIGERKSAF------ 598
                +G+ Y  +   S++   F  + +                   GE   A       
Sbjct: 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433

Query: 599 ------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
                   +    +G+  +Q  +I  A E  + + ++              + + L    
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVA 485

Query: 653 DAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
                +  AI   +  + +  +K  +           L    ++   
Sbjct: 486 FNKSDMQTAINHFQNALLL-VKKTQSNEKPWAATWANLGHAYRKLKM 531

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 54/407 (13%), Positives = 123/407 (30%), Gaps = 67/407 (16%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
           H++LG      GQL ++L  +   ++         DP         A   +   +   A 
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL 57

Query: 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA---------SMT 421
                 + +  D         A  +R  G +   +G  + A +                 
Sbjct: 58  PDLTKVIALKMDF------TAARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
             +    A+      S        + Y  A     K L        E     A +    A
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--------EVCVWDAELRELRA 161

Query: 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
           + + + G+ R++ S  + A ++  K        +       +S++Y  + + E ++  ++
Sbjct: 162 ECFIKEGEPRKAISDLKAASKL--KS-------DNTEAFYKISTLYYQLGDHELSLSEVR 212

Query: 542 KALKI---YNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
           + LK+   +         V  +   +         G Y+D+   +++ +          +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVA 268

Query: 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656
            +   +  ++     +     EA+ +  E   +         PD +    + A  Y    
Sbjct: 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEE 320

Query: 657 RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 703
             D+AI+          E     N +    +  L +  +   + + R
Sbjct: 321 MYDEAIQDY--------EAAQEHNENDQQIREGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 44/391 (11%), Positives = 108/391 (27%), Gaps = 84/391 (21%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           A ++ ++G+   A+P L + I +        +   A     +Q G      G+L+ +   
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKM------DFTAA----RLQRGHLLLKQGKLDEAEDD 93

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
           +   L+         +P                    E            +        +
Sbjct: 94  FKKVLKS--------NP-----------------SEQEE----------KEAESQLVKAD 118

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYD 449
           E    R   L      D+ AA+  L       +     DAE+        + ++      
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKI----LEVCVWDAELR---ELRAECFIKEGEPR 171

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI---YEK 506
           +A    + A         +        F +++ +Y + G    S S     L++   +++
Sbjct: 172 KAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
                   +  + L + +           A    +  +K     P         + ++  
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICH 280

Query: 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626
            +       ++       +       + +      AL     A +     +EA++ +E A
Sbjct: 281 CFSKDEKPVEAIRICSEVL-------QMEPDNV-NALKDRAEAYLIEEMYDEAIQDYEAA 332

Query: 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
           +          + +   +   L      + +
Sbjct: 333 QEH--------NENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 31/200 (15%)

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
               + L       G+L ++ S    A+     P       +        ++++ +M + 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDG--DP-------DNYIAYYRRATVFLAMGKS 53

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK------ 587
           + A+  L K + +       +        Q G +    G   ++ D FK  +        
Sbjct: 54  KAALPDLTKVIAL-------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106

Query: 588 -LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646
              A  +   A     L    L          A+   ++   +              +  
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRE 158

Query: 647 NLAGTYDAIGRLDDAIEILE 666
             A  +   G    AI  L+
Sbjct: 159 LRAECFIKEGEPRKAISDLK 178

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 41/196 (20%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALA--------KFAGHMQLGDTY 318
            + I+ +Y  LG +  ++  + + +++        +H           K    ++  +  
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKKLNKLIESAEEL 244

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC----RYLAEAHVQALQFSEAQKFCQ 374
              G+  ++   Y + ++         +P V E        +     +  +  EA + C 
Sbjct: 245 IRDGRYTDATSKYESVMKT--------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296

Query: 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
             L +  DN        A   R        +  ++ A++    A      N+ D ++   
Sbjct: 297 EVLQMEPDN------VNALKDR--AEAYLIEEMYDEAIQDYEAA---QEHNENDQQIRE- 344

Query: 435 DCSIGDTYLSLSRYDE 450
              +      L +  +
Sbjct: 345 --GLEKAQRLLKQSQK 358

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  100 bits (251), Expect = 2e-22
 Identities = 52/400 (13%), Positives = 120/400 (30%), Gaps = 58/400 (14%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           ++A Y S+G   + + +  +++E+ P      +++       ++       LG+  +++ 
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKP------DYSKV----LLRRASANEGLGKFADAMF 94

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
             +        + G+ +    E             +  E       A     +  S    
Sbjct: 95  DLS-----VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL-STQPA 148

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           +E  D++       +        +  +  +    +N+ D E+   +        S   YD
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM--NGLSNLYKRSPESYD 206

Query: 450 EAGFAYQKALTAFK------TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
           +A  ++ KA   F+          +    +A                  +    + A+ +
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266

Query: 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563
           + +           +    ++ I    N+  +      KALK+        S  + +   
Sbjct: 267 FPR----------VNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNNSSVYYH 309

Query: 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623
            G M ++L NY  +   F  A        E           Q+     +    ++   LF
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAK-------ELDPENI-FPYIQLACLAYRENKFDDCETLF 361

Query: 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
            EA+           P+   V +  A         D A++
Sbjct: 362 SEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALK 393

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 93.3 bits (232), Expect = 4e-20
 Identities = 55/442 (12%), Positives = 128/442 (28%), Gaps = 68/442 (15%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
                 A+       +  NG  +   +  +        ++ +  E    ++ +   P  E
Sbjct: 86  LGKFADAMFDLSVLSL--NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATP-TE 142

Query: 299 EGQEHALAKFAGHMQL-----GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
              + A  +      L       ++  + + E +   Y    E  K+++      +    
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG----LSNLY 198

Query: 354 RYLAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAAL 412
           +   E++ +A + F++A +  +  LD + ++      + A      G+    K D   A 
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE-KLAISLEHTGIFKFLKNDPLGAH 257

Query: 413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472
           E +  A    I              +       +   E    + KAL        +    
Sbjct: 258 EDIKKA----IELFPRVNSY---IYMALIMADRNDSTEYYNYFDKAL--------KLDSN 302

Query: 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532
            +SV+     M        ++    + A  +   P       E       ++ +    N+
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DP-------ENIFPYIQLACLAYRENK 353

Query: 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            +    L  +A + + +          +      +     ++  +   +  AI       
Sbjct: 354 FDDCETLFSEAKRKFPE-------APEVPNFFAEILTDKNDFDKALKQYDLAI------- 399

Query: 593 ERKSAFF------GVALNQMGLACVQRY--SINEAVELFEEARSILEQECGPYHPDTLGV 644
           E ++            + +  L        +  EA  L E+A  +         P +   
Sbjct: 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------DPRSEQA 451

Query: 645 YSNLAGTYDAIGRLDDAIEILE 666
              LA        +D+AI + E
Sbjct: 452 KIGLAQMKLQQEDIDEAITLFE 473

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 92.9 bits (231), Expect = 6e-20
 Identities = 57/451 (12%), Positives = 134/451 (29%), Gaps = 75/451 (16%)

Query: 259 KPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY 318
           K   +  + L      +    +Y++AI     ++E+      +E  +     +  L   Y
Sbjct: 2   KD--KYALALKDKGNQFFRNKKYDDAIKYYNWALEL------KEDPVF----YSNLSACY 49

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK-FCQMAL 377
             +G L+  +   T  LE+         P   +     A A+    +F++A      ++L
Sbjct: 50  VSVGDLKKVVEMSTKALEL--------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSL 101

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
                + + AS+E   +R    L  +     +     +  A+ T             D  
Sbjct: 102 ---NGDFNDASIEPMLER---NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155

Query: 438 I-------GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                     ++  + + +     Y ++  A K                           
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL---SNLYKRSPESYDKADESF 212

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
            ++    E  L    +         I+  L          N+   A + ++KA++++   
Sbjct: 213 TKAARLFEEQLDKNNEDEKLKEKLAIS--LEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270

Query: 551 PGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
                      +   M ++     + ++ Y+ F  A+       +  ++         G 
Sbjct: 271 ----------NSYIYMALIMADRNDSTEYYNYFDKALKL-----DSNNSS---VYYHRGQ 312

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668
                 + ++A + F++A+ +         P+ +  Y  LA       + DD   +    
Sbjct: 313 MNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEA 364

Query: 669 VGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
                       P+  +     AE+L +   
Sbjct: 365 KRK--------FPEAPEVPNFFAEILTDKND 387

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 54/431 (12%), Positives = 127/431 (29%), Gaps = 61/431 (14%)

Query: 239 QKALELALRAAKS----FEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
           ++       A  +        A  +   +  +      A +  + +        ++S E 
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186

Query: 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354
                     L K +                 +   +   L+   +   +   ++  +  
Sbjct: 187 DKELMNGLSNLYKRS----PESYDKADESFTKAARLFEEQLDKNNEDE-KLKEKLAISLE 241

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
           +             A +  + A+++            +       LI   + D      +
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRV-------NSYIYM--ALIMADRNDSTEYYNY 292

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
              A    +    D+  +SV    G     L  YD+AG  + KA         E  P   
Sbjct: 293 FDKA----L--KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK--------ELDPENI 338

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
             +++LA +  R  K  + ++    A R + +                 + I    N+ +
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPE---------APEVPNFFAEILTDKNDFD 389

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGI--EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
           +A+K    A+++ N   G    +A +  +A +      + N+ ++ +  + A        
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS------- 442

Query: 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
           +        A   +    +Q+  I+EA+ LFEE+  +                  +   +
Sbjct: 443 KLDPRSE-QAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAIT--F 491

Query: 653 DAIGRLDDAIE 663
               ++   I 
Sbjct: 492 AEAAKVQQRIR 502

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 98.1 bits (244), Expect = 3e-22
 Identities = 40/317 (12%), Positives = 88/317 (27%), Gaps = 13/317 (4%)

Query: 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHE 409
            E     A+  +      EA++  ++AL+        +         ++G +   KG+  
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---RIVATSVLGEVLHCKGELT 70

Query: 410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469
            +L  +         +D             +   +      A    +KA         E 
Sbjct: 71  RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130

Query: 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529
            P    +    A +     +L E+++   + + +         P++    L  +     +
Sbjct: 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS----YQPQQQLQCLAMLIQCSLA 186

Query: 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
             +L+ A   L +   +  +       ++       + + M G+      +  N +    
Sbjct: 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD----KAAAANWLRHTA 242

Query: 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649
                 + F       +  A +       A  + EE              D       L 
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLN 300

Query: 650 GTYDAIGRLDDAIEILE 666
             Y   GR  DA  +L 
Sbjct: 301 QLYWQAGRKSDAQRVLL 317

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 96.2 bits (239), Expect = 2e-21
 Identities = 43/343 (12%), Positives = 110/343 (32%), Gaps = 23/343 (6%)

Query: 205 HKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL 264
           H+ +D+ E  +           +A+  I+ G+ P +A  LA  A +    G         
Sbjct: 2   HEIKDIREDTM----HAEFNALRAQVAINDGN-PDEAERLAKLALEELPPGW----FYSR 52

Query: 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL 324
           ++   V+  +    G+   ++ +++Q+ ++       +         +Q  +     G L
Sbjct: 53  IVATSVLGEVLHCKGELTRSLALMQQTEQM---ARQHDVWHYALWSLIQQSEILFAQGFL 109

Query: 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
           + +        ++  +   E  P      R  A+      +  EA+   +  +++     
Sbjct: 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169

Query: 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGDTYL 443
               L+  A   ++      +GD + A   L      +      ++ +++ +      + 
Sbjct: 170 PQQQLQCLA---MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
                  A       L      +  N+  +   +  +A      G+   ++   E     
Sbjct: 227 MTGDKAAA----ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282

Query: 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
                  +  +   + L   + +Y        A ++L  ALK+
Sbjct: 283 ARS--LRLMSDLNRNLLLL-NQLYWQAGRKSDAQRVLLDALKL 322

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 53/442 (11%), Positives = 126/442 (28%), Gaps = 87/442 (19%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                +   Y +++  +E+                    H++LG      GQL ++L  +
Sbjct: 10  GVDLGTENLYFQSMADVEK--------------------HLELGKKLLAAGQLADALSQF 49

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              ++         DP         A   +   +   A       + +  D         
Sbjct: 50  HAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------TA 95

Query: 392 AADRRLMGLICETKGDHEAALEHLVLA---------SMTMIANDQDAEVASVDCSIGDTY 442
           A  +R  G +   +G  + A +                   +    ++      S     
Sbjct: 96  ARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502
                Y  A     K L        E     A +    A+ + + G+ R++ S  + A +
Sbjct: 154 FGSGDYTAAIAFLDKIL--------EVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205

Query: 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVAG 559
           +                   +S++Y  + + E ++  +++ LK+   +         V  
Sbjct: 206 LKND---------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256

Query: 560 IEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           +   +         G Y+D+   +++ +          + +   +  ++     +     
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFSKDEKPV 312

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           EA+ +  E   +         PD +    + A  Y      D+AI+          E   
Sbjct: 313 EAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDY--------ETAQ 356

Query: 678 TANPDVDDEKRRLAELLKEAGR 699
             N +    +  L +  +   +
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 51/413 (12%), Positives = 123/413 (29%), Gaps = 60/413 (14%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           A ++ ++G+   A+P L + I++        +   A     +Q G      G+L+ +   
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKM------DFTAA----RLQRGHLLLKQGKLDEAEDD 116

Query: 331 YTTGLEVQ------KQVLGE-TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
           +   L+        K+   +       +  R  A     +  ++ A  F    L++   +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443
                   A  R L       +G+   A+  L          + + E       I   Y 
Sbjct: 177 --------AELRELRAECFIKEGEPRKAISDL---KAASKLKNDNTEAF---YKISTLYY 222

Query: 444 SLSRYDEAGFAYQKAL-------TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
            L  ++ +    ++ L         F   K      +  +     ++    G+  ++ S 
Sbjct: 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--KLNKLIESAEELIRD-GRYTDATSK 279

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQS 555
            E+ ++           E        +   +    +  +AI++  + L++  ++      
Sbjct: 280 YESVMKTEPS-----IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL-- 332

Query: 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615
                       Y +   Y ++   ++ A        + +      A   +  +  + Y 
Sbjct: 333 ------KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG-LEKAQRLLKQSQKRDYY 385

Query: 616 INEAVEL---FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEIL 665
               V+     +E      +    +HPD                 +  A E+L
Sbjct: 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 44/369 (11%), Positives = 101/369 (27%), Gaps = 65/369 (17%)

Query: 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428
                   +D+  +N    S+ +      +G      G    AL     A    +  D D
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAA----V--DGD 56

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
            +           +L++ +   A     K +        +      +  ++   +  + G
Sbjct: 57  PDNYIAYYRRATVFLAMGKSKAALPDLTKVI--------QLKMDFTAARLQRGHLLLKQG 108

Query: 489 KLRESKSYCENALRI------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
           KL E++   +  L+        ++    +   +    L   +       +   AI  L K
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168

Query: 543 ALKI---------------------------YNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
            L++                              A   ++       ++  +YY LG++ 
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228

Query: 576 DSYDSFKNAIS----KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631
            S    +  +       R     K       L +     ++     +A   +E     ++
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MK 285

Query: 632 QECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690
            E  P   +        +   +    +  +AI +   V+ +         PD  +  +  
Sbjct: 286 TE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDR 335

Query: 691 AELLKEAGR 699
           AE       
Sbjct: 336 AEAYLIEEM 344

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 35/296 (11%), Positives = 86/296 (29%), Gaps = 83/296 (28%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALA--------KFAGHMQLGDTY 318
            + I+ +Y  LG +  ++  + + +++        +H           K    ++  +  
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKKLNKLIESAEEL 267

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC----RYLAEAHVQALQFSEAQKFCQ 374
              G+  ++   Y + ++         +P + E        +     +  +  EA + C 
Sbjct: 268 IRDGRYTDATSKYESVMKT--------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319

Query: 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
             L +  DN        A   R        +  ++ A++    A      N+ D ++   
Sbjct: 320 EVLQMEPDN------VNALKDR--AEAYLIEEMYDEAIQDYETA---QEHNENDQQIRE- 367

Query: 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494
              +      L +  +  +     +                          R  K +E  
Sbjct: 368 --GLEKAQRLLKQSQKRDYYKILGV-------------------------KRNAKKQEII 400

Query: 495 -SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +Y + AL+    P              D     E   + E+    +  A ++ +D
Sbjct: 401 KAYRKLALQW--HP--------------DNFQNEEEKKKAEKKFIDIAAAKEVLSD 440

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 43/193 (22%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           L++ A ELI  G     A            +      +   V     I   +    +  E
Sbjct: 260 LIESAEELIRDGR-YTDATSKYESV-----MKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
           AI V  + +++ P      ++  A         + Y +    + ++  Y T  E      
Sbjct: 314 AIRVCSEVLQMEP------DNVNA----LKDRAEAYLIEEMYDEAIQDYETAQEH----- 358

Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQK------------------FCQMALDIHKDNG 384
              +    +    L +A     Q  +                     + ++AL  H DN 
Sbjct: 359 ---NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415

Query: 385 SPASLEEAADRRL 397
                ++ A+++ 
Sbjct: 416 QNEEEKKKAEKKF 428

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 49/348 (14%), Positives = 105/348 (30%), Gaps = 60/348 (17%)

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           LAE H     F    K   + ++    +        A+   +                  
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKDPFH--------ASCLPVHIGTLVELNKANELFY-- 77

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNKGENHPAVA 474
              S  ++       V+    ++G  YL +    + A     KA T              
Sbjct: 78  --LSHKLVDLYPSNPVSW--FAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYG 125

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
             ++     +    +  ++ +    A ++                +  +   Y   N  +
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQL--MK-------GCHLPMLYIGLEYGLTNNSK 176

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            A +   +AL I  + P             ++GV+ +  G +  +   F +A+ K++AIG
Sbjct: 177 LAERFFSQALSIAPEDP---------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

Query: 593 -ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
            E     +   LN +G  C +     EA++   +A  +         P     YS +   
Sbjct: 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYI 279

Query: 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
           +  +G  ++A++     +G+          D       L   ++    
Sbjct: 280 HSLMGNFENAVDYFHTALGL--------RRDDTFSVTMLGHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 43/320 (13%), Positives = 102/320 (31%), Gaps = 47/320 (14%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           +  +A  +     +     +        V+E+   HA            T   L +    
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSV-----VMEKDPFHASC----LPVHIGTLVELNKANEL 75

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEA-HVQALQFSEAQKFCQMALDIHKDNGSP 386
                         L +  P    +   +     +   +   A+++   A  + K  G P
Sbjct: 76  FYLS--------HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG-P 126

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
           A +         G     + +H+ A+     A        +   +      IG  Y   +
Sbjct: 127 AWI-------AYGHSFAVESEHDQAMAAYFTA----AQLMKGCHLPM--LYIGLEYGLTN 173

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   + +AL           P    V   +  +  + G+ + ++ +  +AL   + 
Sbjct: 174 NSKLAERFFSQAL--------SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
               V  ++    L ++  +   + +  +A+   ++AL +    P      A   + +G 
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQN----ASTYSAIGY 278

Query: 567 MYYMLGNYSDSYDSFKNAIS 586
           ++ ++GN+ ++ D F  A+ 
Sbjct: 279 IHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 54/367 (14%), Positives = 109/367 (29%), Gaps = 71/367 (19%)

Query: 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282
           +++  A     + D  +   +L     +         P     + +H        L + N
Sbjct: 24  VVVSLAERHYYNCDF-KMCYKLTSVVMEKD-------PFHASCLPVH--IGTLVELNKAN 73

Query: 283 EAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQL-ENSLMCYTTGLEVQKQ 340
           E   +  + +++ P       + ++       +G  Y M+G   E++    +    +   
Sbjct: 74  ELFYLSHKLVDLYP------SNPVS----WFAVGCYYLMVGHKNEHARRYLSKATTL--- 120

Query: 341 VLGETDPRVGETCRYLAEAHVQALQ--FSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
                +   G    ++A  H  A++    +A      A  + K    P           +
Sbjct: 121 -----EKTYGPA--WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML--------YI 165

Query: 399 GLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           GL      + + A      A    ++   +D  V      +G        +  A   +  
Sbjct: 166 GLEYGLTNNSKLAERFFSQA----LSIAPEDPFVM---HEVGVVAFQNGEWKTAEKWFLD 218

Query: 458 ALTAFKTNKGENH-PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           AL   K    E        +   L  +  +  K  E+  Y   AL +         P+  
Sbjct: 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQN- 269

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ--MGVMYYMLGNY 574
           AS  + +  I+  M   E A+     AL +  D            +   +G    M    
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT---------FSVTMLGHCIEMYIGD 320

Query: 575 SDSYDSF 581
           S++Y   
Sbjct: 321 SEAYIGA 327

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
           A       ++G+T+  L  + +A  A+++ L   K  +  +  A    +  L + Y   G
Sbjct: 6   AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLG 63

Query: 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY- 547
           +   +  Y +  L +  + +        A     + + Y  + + E+AI    K L I  
Sbjct: 64  EFETASEYYKKTLLLARQ-LKDRA--VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120

Query: 548 --NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
              D  G+      +    G  Y  LGN+  +    +  +   R +G
Sbjct: 121 ELKDRIGEGRACWSL----GNAYTALGNHDQAMHFAEKHLEISREVG 163

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 81.8 bits (203), Expect = 3e-18
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 398 MGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
           +G      G+   A+        +     D+ AE      ++G+ Y+ L  ++ A   Y+
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RIAYSNLGNAYIFLGEFETASEYYK 73

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           K L   +  K  +    A     L + Y       ++  Y    L I ++ +        
Sbjct: 74  KTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRI--GE 128

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
                 + + Y ++   +QA+   +K L+I 
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 78.7 bits (195), Expect = 3e-17
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 5/151 (3%)

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
                 ++ + +  +     A+   ++ L I  +  G ++      + +G  Y  LG + 
Sbjct: 8   QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFE 66

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + + +K  +   R + +R       +   +G          +A++   +  +I  QE  
Sbjct: 67  TASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELK 123

Query: 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                      +L   Y A+G  D A+   E
Sbjct: 124 -DRIGEGRACWSLGNAYTALGNHDQAMHFAE 153

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 77.2 bits (191), Expect = 9e-17
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 6/164 (3%)

Query: 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528
           +  A    F  L + +   G  R++    E  L I ++   G    E     +++ + Y 
Sbjct: 4   SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAE-RIAYSNLGNAYI 60

Query: 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
            + E E A +  +K L +       ++  A     +G  Y +L +Y  + D     ++  
Sbjct: 61  FLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119

Query: 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
           + + +R     G A   +G A     + ++A+   E+   I  +
Sbjct: 120 QELKDRIGE--GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 7/166 (4%)

Query: 343 GETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           G       G     L   H     F +A    +  L I K+ G  A+  E      +G  
Sbjct: 1   GPGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNA 58

Query: 402 CETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
               G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A   + K L 
Sbjct: 59  YIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117

Query: 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
             +  + ++          L + Y   G   ++  + E  L I  +
Sbjct: 118 IAQ--ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 66.0 bits (162), Expect = 7e-13
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN 326
               +   +  LG + +A+   EQ + I   E G + A      +  LG+ Y  LG+ E 
Sbjct: 11  AFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAER--IAYSNLGNAYIFLGEFET 67

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +   Y   L + +Q+         ++C  L   +     + +A  +    L I ++    
Sbjct: 68  ASEYYKKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHL 415
               E      +G      G+H+ A+   
Sbjct: 126 IG--EGRACWSLGNAYTALGNHDQAMHFA 152

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610
           PG ++        +G  +Y+LGN+ D+  + +  +   +  G++ +    +A + +G A 
Sbjct: 2   PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAY 59

Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           +       A E +++   +  Q              +L  TY  +   + AI+   
Sbjct: 60  IFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           N + A+      L  AK F      K +    +    +   Y  LG++  A    ++++ 
Sbjct: 24  NFRDAVIAHEQRLLIAKEF----GDKAAE--RIAYSNLGNAYIFLGEFETASEYYKKTLL 77

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
           +   +       A+      LG+TY +L   E ++  +   L + +++        G  C
Sbjct: 78  L-ARQLKDRAVEAQ--SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR--IGEGRAC 132

Query: 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
             L  A+       +A  F +  L+I ++ G
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 33/307 (10%), Positives = 77/307 (25%), Gaps = 50/307 (16%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
                    ++  A+E          A   ++            Y  L++YD A    + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKL----EAKKYNSPYIY--NRRAVCYYELAKYDLAQKDIET 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
             +           A ++ F     +  + G+   +    + A+                
Sbjct: 63  YFSKVNAT-----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DT-------TRL 108

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYS 575
                + S + +      AI+ ++K ++     P         +   ++G  YY    Y 
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP---------KVFYELGQAYYYNKEYV 159

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN---EAVELFEEARSILEQ 632
            +  SF   +               +       A   +        A   +E+   +   
Sbjct: 160 KADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211

Query: 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692
               Y  + +     +A  Y        A    + ++ +        +P        L  
Sbjct: 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKM 263

Query: 693 LLKEAGR 699
            L+    
Sbjct: 264 KLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 24/239 (10%), Positives = 58/239 (24%), Gaps = 37/239 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
            A  Y  L +Y+ A   +E       +   +  +          G      GQ   ++  
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFS--KVNATKAKSAD----FEYYGKILMKKGQDSLAIQQ 96

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
           Y   ++         D    +    +         F  A ++ +  +     +       
Sbjct: 97  YQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD------- 141

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA---NDQDAEVASVDCSIGDTYLSL-- 445
                  +G       ++  A    V      +    N                  +   
Sbjct: 142 -PKVFYELGQAYYYNKEYVKADSSFVKV----LELKPNIYIG-----YLWRARANAAQDP 191

Query: 446 -SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
            ++   A   Y+K +        +    +      +A  Y       ++ +  +N L +
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 21/137 (15%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
           +     +   NY+++ + F    +K     +  S       N+  +   +    + A + 
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAK-----KYNSP---YIYNRRAVCYYELAKYDLAQKD 59

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
            E   S +              +          G+   AI+  +  V          +  
Sbjct: 60  IETYFSKVN-----ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTT 106

Query: 683 VDDEKRRLAELLKEAGR 699
             D   ++       G 
Sbjct: 107 RLDMYGQIGSYFYNKGN 123

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 22/142 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN--- 326
           +   Y    +Y +A     + +E+ P         +     ++      A          
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKP------NIYIG----YLWRARANAAQDPDTKQGL 197

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +   Y   +EV      +    + E   Y+A  +       +A    +  L +   N   
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN--- 254

Query: 387 ASLEEAADRRLMGLICETKGDH 408
              ++A     + +  E    H
Sbjct: 255 ---KKA--IDGLKMKLEHHHHH 271

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 50/443 (11%), Positives = 96/443 (21%), Gaps = 78/443 (17%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           +Q   + S     ++ALE   R            P  + V+ +        +L      +
Sbjct: 70  EQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTP--QQVVAIASHDGGKQALETVQRLL 126

Query: 286 PVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344
           PVL Q+  + P      E  +A              L  ++  L        +       
Sbjct: 127 PVLCQAHGLTP------EQVVA----IASHDGGKQALETVQALLPVLCQAHGL------- 169

Query: 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
             P                            A  +                   G   + 
Sbjct: 170 -TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ--------VVAIASNGGGKQA 220

Query: 405 KGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
               +  L  L  A         Q     +   S G    +L           +A     
Sbjct: 221 LETVQRLLPVLCQA----HGLTPQQVVAIA---SNGGGKQALETVQRLLPVLCQAH---- 269

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523
                  P         +        ++        A  +   P                
Sbjct: 270 ----GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL--TP--------------QQ 309

Query: 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583
                S    +QA++ +Q+ L +   A G         A        L            
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
           A                VA+   G       ++   + +  +A  +         P+ + 
Sbjct: 370 AH-------GLTPEQV-VAIASNGGGKQALETVQRLLPVLCQAHGL--------TPEQVV 413

Query: 644 VYSNLAGTYDAIGRLDDAIEILE 666
             ++  G   A+  +   + +L 
Sbjct: 414 AIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 9e-11
 Identities = 41/351 (11%), Positives = 82/351 (23%), Gaps = 59/351 (16%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-P 295
             ++ALE   R            P  + V+ +        +L      +PVL Q+  + P
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355
                 +  +A        G     L  ++  L        +         P+       
Sbjct: 240 ------QQVVA----IASNGGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIAS 281

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
            +                  A  +     +P  +   A     G   +     +  L  L
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGL-----TPQQVVAIASN---GGGKQALETVQRLLPVL 333

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
             A            VA    S      +L           +A            P    
Sbjct: 334 CQA----HGLTPQQVVAI--ASHDGGKQALETVQRLLPVLCQAH--------GLTPEQVV 379

Query: 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535
                         ++        A  +   P       E    +       +++  +++
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGL--TP-------EQVVAIASHDGGKQALETVQR 430

Query: 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            + +L +A  +    P Q   +A      G     L +          A++
Sbjct: 431 LLPVLCQAHGLT---PQQVVAIA----SNGGGRPALESIVAQLSRPDPALA 474

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 9e-11
 Identities = 50/431 (11%), Positives = 93/431 (21%), Gaps = 84/431 (19%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           +Q   + S     ++ALE   R            P  E V+ +        +L      +
Sbjct: 104 QQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTP--EQVVAIASHDGGKQALETVQALL 160

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           PVL Q+  +       E  +A        G     L  ++  L        +        
Sbjct: 161 PVLCQAHGLT-----PEQVVA----IASNGGGKQALETVQRLLPVLCQAHGL-------- 203

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
            P+                           A  +            A      G   +  
Sbjct: 204 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ------VVAIASN--GGGKQAL 255

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
              +  L  L  A            VA    S      +L           +A       
Sbjct: 256 ETVQRLLPVLCQA----HGLTPQQVVA--IASNSGGKQALETVQRLLPVLCQAH------ 303

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
                P                  ++        A  +   P       +    +     
Sbjct: 304 --GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL--TP-------QQVVAIASHDG 352

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
             +++  +++ + +L +A  +    P Q   +A      G     L            A 
Sbjct: 353 GKQALETVQRLLPVLCQAHGL---TPEQVVAIAS----NGGGKQALETVQRLLPVLCQAH 405

Query: 586 S--------------KLRAIGERKSAF------------FGVALNQMGLACVQRYSINEA 619
                            +A+   +                 VA+   G       SI   
Sbjct: 406 GLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQ 465

Query: 620 VELFEEARSIL 630
           +   + A + L
Sbjct: 466 LSRPDPALAAL 476

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 42/346 (12%), Positives = 81/346 (23%), Gaps = 57/346 (16%)

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           L  A    +   EA    + AL     N +P  +   A         +     +  L  L
Sbjct: 39  LKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH---DGGKQALETVQRLLPVL 95

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
             A        Q     +   S      +L           +A            P    
Sbjct: 96  CQA---HGLTPQQVVAIA---SHDGGKQALETVQRLLPVLCQAH--------GLTPEQVV 141

Query: 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535
                         ++        A  +         PE++ +          S    +Q
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLT--------PEQVVA--------IASNGGGKQ 185

Query: 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595
           A++ +Q+ L +   A G         A  G     L            A           
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLT 238

Query: 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655
                VA+   G       ++   + +  +A  +         P  +   ++ +G   A+
Sbjct: 239 PQQV-VAIASNGGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIASNSGGKQAL 289

Query: 656 GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701
             +   + +L    G+         P             +    V+
Sbjct: 290 ETVQRLLPVLCQAHGL--------TPQQVVAIASNGGGKQALETVQ 327

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 22/198 (11%), Positives = 37/198 (18%), Gaps = 33/198 (16%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
                +L      +PVL Q+  + P      +  +A              L  ++  L  
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTP------QQVVA----IASHDGGKQALETVQRLLPV 366

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                 +         P                            A  +  +        
Sbjct: 367 LCQAHGL--------TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ------- 411

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
                       +     +  L  L  A            VA    S G    +L     
Sbjct: 412 -VVAIASHDGGKQALETVQRLLPVLCQA----HGLTPQQVVAI--ASNGGGRPALESIVA 464

Query: 451 AGFAYQKALTAFKTNKGE 468
                  AL A   +   
Sbjct: 465 QLSRPDPALAALTNDHLV 482

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 40/240 (16%), Positives = 72/240 (30%), Gaps = 55/240 (22%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T     +   A  A   A            P   +V   LA  +        + +   
Sbjct: 62  GLTQAENEKDGLAIIALNHAR--------MLDPKDIAVHAALAVSHTNEHNANAALASLR 113

Query: 499 NALRIYEK------PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAP 551
             L    +             +     +      + + NE  +   LL  AL++  NDA 
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA- 172

Query: 552 GQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVAL 603
                    +    +GV+Y +  NY  +  + + A+       E +          G  L
Sbjct: 173 ---------QLHASLGVLYNLSNNYDSAAANLRRAV-------ELRPDDAQLWNKLGATL 216

Query: 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                    R    EA++ +  A  I        +P  + V  N+A +Y  + + D A +
Sbjct: 217 ANGN-----RP--QEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAK 261

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 49/333 (14%), Positives = 98/333 (29%), Gaps = 56/333 (16%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                  L    EA    E   +  P      E   A       LG T A   +   +++
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAP------EREEA----WRSLGLTQAENEKDGLAII 76

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-------HKD 382
                  +        DP+       LA +H      + A    +  L            
Sbjct: 77  ALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128

Query: 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDT 441
           N       +  + +          ++      L  A    +  N  DA++     S+G  
Sbjct: 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA----LEMNPNDAQLH---ASLGVL 181

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           Y   + YD A    ++A+        E  P  A ++ +L        + +E+      AL
Sbjct: 182 YNLSNNYDSAAANLRRAV--------ELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233

Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVA 558
            I   P            + +++  Y +M++ + A K L +A+ +        G+ S  A
Sbjct: 234 DI--NP-------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284

Query: 559 G--IEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
              +     ++  ++        ++   +    
Sbjct: 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 34/232 (14%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-PVI 297
           +  L    +  +   +       ++  + +      + +  +Y E   +L  ++E+ P  
Sbjct: 113 RAWLLSQPQYEQLGSVNLQADVDID-DLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-- 169

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
                 A      H  LG  Y +    +++       +E+         P   +    L 
Sbjct: 170 ----NDAQL----HASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLG 213

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                  +  EA      ALDI+                 M +       ++ A + LV 
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGY------VRV--MYNMAVSYSNMSQYDLAAKQLVR 265

Query: 418 A------SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
           A        T           S+          ++R D     Y + +  F 
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599
           + +    Y               + G+    L N +++  +F+          +      
Sbjct: 3   MLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVC-------QAAPERE 55

Query: 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLD 659
             A   +GL   +      A+     AR +         P  + V++ LA ++      +
Sbjct: 56  -EAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNAN 106

Query: 660 DAIEILE 666
            A+  L 
Sbjct: 107 AALASLR 113

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 55/327 (16%), Positives = 102/327 (31%), Gaps = 52/327 (15%)

Query: 347 PRVGETCRYLAEAHVQALQFSE-AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
             + E  +  AEAH     + +             ++N     L +       GL    +
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEEN----PLRDHPQPFEEGLRRLQE 77

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GD   A+     A    +   QD +       +G T     +   A  A ++ L      
Sbjct: 78  GDLPNAVLLFEAA----VQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCL------ 125

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
             E  P   +  + LA  +      R++     + LR        V P E  +G   +  
Sbjct: 126 --ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183

Query: 526 IYESMNEL------EQAIKLLQKALKI---YNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
               +  L       +  +L   A+++     D   Q          +GV++ + G Y  
Sbjct: 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG--------LGVLFNLSGEYDK 235

Query: 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
           + D F  A+         +   + +  N++G          EAV  +  A  +       
Sbjct: 236 AVDCFTAAL-------SVRPNDY-LLWNKLGATLANGNQSEEAVAAYRRALEL------- 280

Query: 637 YHPDTLGVYSNLAGTYDAIGRLDDAIE 663
             P  +    NL  +   +G   +A+E
Sbjct: 281 -QPGYIRSRYNLGISCINLGAHREAVE 306

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 46/332 (13%), Positives = 94/332 (28%), Gaps = 53/332 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                   G    A+ + E +++  P      +H  A       LG T A   Q   ++ 
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDP------KHMEA----WQYLGTTQAENEQELLAIS 119

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD------- 382
                LE+         P        LA +        +A +  +  L            
Sbjct: 120 ALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171

Query: 383 -NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441
                        +R++G +           E  + A    +  D  +    V C +G  
Sbjct: 172 AEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAA----VRLDPTSIDPDVQCGLGVL 226

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           +     YD+A   +  AL           P    ++ +L        +  E+ +    AL
Sbjct: 227 FNLSGEYDKAVDCFTAAL--------SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278

Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561
            +  +P              ++     ++    +A++   +AL +   + G +     + 
Sbjct: 279 EL--QP-------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329

Query: 562 AQ----MGVMYYMLGNYSDSYDSFKNAISKLR 589
                 + +   MLG       +    +S L 
Sbjct: 330 ENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 43/298 (14%), Positives = 92/298 (30%), Gaps = 48/298 (16%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
             +        Q   AI  L + +E+ P      ++  A     M L  ++        +
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKP------DNQTA----LMALAVSFTNESLQRQA 151

Query: 328 LMCYTTGLEVQ--------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379
                  L               G     +G + R L      +  F E ++    A+ +
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS-LFLEVKELFLAAVRL 210

Query: 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSI 438
              +       +   +  +G++    G+++ A++    A    ++    D  + +    +
Sbjct: 211 DPTS------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA----LSVRPNDYLLWN---KL 257

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T  + ++ +EA  AY++AL        E  P        L       G  RE+  +  
Sbjct: 258 GATLANGNQSEEAVAAYRRAL--------ELQPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSS----IYESMNELEQAIKLLQKALKIYNDAPG 552
            AL +  +     P  E  +   ++ S        + + +       + L       G
Sbjct: 310 EALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 51/403 (12%), Positives = 111/403 (27%), Gaps = 106/403 (26%)

Query: 278 LGQYNE-AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
           L  Y++      ++  +       +E+ L       + G      G L N+++ +     
Sbjct: 38  LSDYDDLTSATYDKGYQF-----EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF----- 87

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
             +  + + DP+  E  +YL     +  Q   A    +  L++                 
Sbjct: 88  --EAAV-QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL----------------- 127

Query: 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
                   K D++ AL  L                         ++ + S   +A    +
Sbjct: 128 --------KPDNQTALMAL-----------------------AVSFTNESLQRQACEILR 156

Query: 457 KALTAFKTNKGE--NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
             L  +              +    L       G L     +      ++   V   P  
Sbjct: 157 DWL-RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-LEVKELFLAAVRLDPTS 214

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYML 571
                   +  ++    E ++A+     AL +  ND                +G      
Sbjct: 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY----------LLWNKLGATLANG 264

Query: 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631
               ++  +++ A+       E +  +   +   +G++C+   +  EAVE F EA ++  
Sbjct: 265 NQSEEAVAAYRRAL-------ELQPGYIR-SRYNLGISCINLGAHREAVEHFLEALNM-- 314

Query: 632 QECGPYHPDTLGVYSNLAGTYDAI-----------GRLDDAIE 663
                    + G         + I           G+ D    
Sbjct: 315 ------QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 19/133 (14%)

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
           +       K  +   + P +         + G+     G+  ++   F+ A+       +
Sbjct: 43  DLTSATYDKGYQFEEENPLRDHPQPF---EEGLRRLQEGDLPNAVLLFEAAV-------Q 92

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
           +       A   +G    +      A+        +         PD       LA ++ 
Sbjct: 93  QDPKHM-EAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFT 143

Query: 654 AIGRLDDAIEILE 666
                  A EIL 
Sbjct: 144 NESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 35/235 (14%), Positives = 67/235 (28%), Gaps = 39/235 (16%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-PVI 297
           +  L      A        G     L     ++ ++  S   + E   +   ++ + P  
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDP-- 212

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
                           LG  + + G+ + ++ C+T  L V         P        L 
Sbjct: 213 ----TSIDPDV--QCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLG 258

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                  Q  EA    + AL++            +  R  +G+ C   G H  A+EH + 
Sbjct: 259 ATLANGNQSEEAVAAYRRALELQPGY------IRS--RYNLGISCINLGAHREAVEHFLE 310

Query: 418 ASMTMIANDQDAEVASVDCSI---------GDTYLSLSRYDEAGFAYQKALTAFK 463
           A    +   + +     +                  L + D  G A  + L+   
Sbjct: 311 A----LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           E E+A   ++  +  ++     Q+ +  +  +    +  L +Y D   +  +   +    
Sbjct: 2   EFERAKSAIESDVDFWDKL---QAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEE 58

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
              +         + GL  +Q   +  AV LFE A   ++Q+  P H +    +  L  T
Sbjct: 59  NPLRDH---PQPFEEGLRRLQEGDLPNAVLLFEAA---VQQD--PKHME---AWQYLGTT 107

Query: 652 YDAIGRLDDAIEILE 666
                +   AI  L 
Sbjct: 108 QAENEQELLAISALR 122

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 34/266 (12%), Positives = 73/266 (27%), Gaps = 48/266 (18%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            G         + A+EH   A        +D    +   +          Y+ A      
Sbjct: 11  EGNKFYKARQFDEAIEHYNKA----WELHKDITYLN---NRAAAEYEKGEYETAISTLND 63

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           A+        E    + + +  ++  + R G         +  +  Y+K        E  
Sbjct: 64  AV--------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-----LTEHR 110

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
           +       I   +   E+ +K  +    +  +        A      G  Y+   ++ ++
Sbjct: 111 TA-----DILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWPNA 158

Query: 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637
             ++   I       +R         +    A  +  S  EA+    +A           
Sbjct: 159 VKAYTEMI-------KRAPEDA-RGYSNRAAALAKLMSFPEAIADCNKAIEK-------- 202

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIE 663
            P+ +  Y   A    A+     A+E
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALE 228

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 34/282 (12%), Positives = 77/282 (27%), Gaps = 57/282 (20%)

Query: 274 IYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYT 332
            +    Q++EAI    ++ E+                            G+ E ++    
Sbjct: 14  KFYKARQFDEAIEHYNKAWELHK-----------DITYLNNRAAAEYEKGEYETAISTLN 62

Query: 333 TGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
             +E            +    + ++++  +           +  ++ ++ +         
Sbjct: 63  DAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-------LT 107

Query: 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEA 451
             R     I     + E  L+            N + AE A      G  Y + S +  A
Sbjct: 108 EHRT--ADILTKLRNAEKELKKAEAE----AYVNPEKAEEAR---LEGKEYFTKSDWPNA 158

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
             AY + +        +  P  A  +   A    +     E+ + C  A+     P    
Sbjct: 159 VKAYTEMI--------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DP---- 204

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDA 550
                       ++   ++ E   A++ L  A       N+ 
Sbjct: 205 ---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 42/233 (18%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
           AA     G+Y  AI  L  ++E      G+E        +  +  ++A +G   + L   
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQ-----GREMRAD----YKVISKSFARIGNAYHKLGDL 95

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              +E  ++ L E   R  +    L           +  K  +    ++ +        E
Sbjct: 96  KKTIEYYQKSLTE--HRTADILTKLR-------NAEKELKKAEAEAYVNPEK------AE 140

Query: 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDE 450
            A  RL G    TK D   A++         I    +DA   S   +       L  + E
Sbjct: 141 EA--RLEGKEYFTKSDWPNAVKAYTEM----IKRAPEDARGYS---NRAAALAKLMSFPE 191

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
           A     KA+        E  P     ++R A       +   +    + A   
Sbjct: 192 AIADCNKAI--------EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 8e-10
 Identities = 31/284 (10%), Positives = 71/284 (25%), Gaps = 64/284 (22%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
               G+ +    Q + ++  Y    E+ K +               A A  +  ++  A 
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELHKDI---------TYLNNRAAAEYEKGEYETAI 58

Query: 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430
                A++  ++          AD +++       G+    L  L       I   Q + 
Sbjct: 59  STLNDAVEQGREM--------RADYKVISKSFARIGNAYHKLGDLKKT----IEYYQKSL 106

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                    D    L   ++     +             +P  A         Y      
Sbjct: 107 TEH---RTADILTKLRNAEKELKKAEAEA--------YVNPEKAEEARLEGKEYFTKSDW 155

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---- 546
             +       ++    P       E A G ++ ++    +    +AI    KA++     
Sbjct: 156 PNAVKAYTEMIKR--AP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

Query: 547 ----YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
                                       +  Y+ + ++   A +
Sbjct: 207 VRAYIR---------------KATAQIAVKEYASALETLDAART 235

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 9/193 (4%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           +    +    QLE +   Y    E              +             +  EA ++
Sbjct: 41  KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH--AAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 373 CQMALDIHKDNGSPASLEEAADR-RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431
            + A  ++ +NG+P   + AA      G + E   D   A+     A+      ++  + 
Sbjct: 99  IEKASVMYVENGTP---DTAAMALDRAGKLME-PLDLSKAVHLYQQAAAVFENEERLRQA 154

Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A +        +   ++DEA  + QK  + +   + EN+P      +    +        
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMY--KEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 492 ESKSYCENALRIY 504
            ++     +  I 
Sbjct: 213 AAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 72.2 bits (177), Expect = 6e-14
 Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 10/228 (4%)

Query: 362 QALQFSEAQKFCQMALDIHKDN--GSPASLEEAADR-RLMGLICETKGDHEAALEHLVLA 418
            A + SEA +    A    K +        + AA       +  +     E A +  +  
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478
           +     N      A      G     L R  EA    +KA   +   +       A    
Sbjct: 63  AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV--ENGTPDTAAMALD 120

Query: 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538
           R   +      L ++    + A  ++E         + A  +   S +     + ++A  
Sbjct: 121 RAGKLME-PLDLSKAVHLYQQAAAVFEN---EERLRQAAELIGKASRLLVRQQKFDEAAA 176

Query: 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            LQK   +Y +      T         ++     +Y  +    + + S
Sbjct: 177 SLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 38/300 (12%), Positives = 87/300 (29%), Gaps = 67/300 (22%)

Query: 443 LSLSRYDEAGFAYQKALTAFKTN---KGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
           ++  +  EA     KA    KT+      ++ + AS + + A  +    +L ++K     
Sbjct: 2   IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61

Query: 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559
               +            A        + + +  + +A++ ++KA  +Y +         G
Sbjct: 62  EAEAHANNRS---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--------G 110

Query: 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619
                 +     G   +  D                                    +++A
Sbjct: 111 TPDTAAMALDRAGKLMEPLD------------------------------------LSKA 134

Query: 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE----- 674
           V L+++A ++ E E          +    +       + D+A   L+    + +E     
Sbjct: 135 VHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192

Query: 675 -------KLGT---ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIE 724
                            D    ++ + E     G   S    +LE LL A    + + + 
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLL 252

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 11/179 (6%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             ++A +  L+ A++     N +              +   L +  EA+  +E++  +  
Sbjct: 51  QLEQAKDAYLQEAEAHA---NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-Y 106

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
           +E G     A      + G        L  ++  Y     V +    E   +  E     
Sbjct: 107 VENGTPDTAAMA--LDRAGKLMEP-LDLSKAVHLYQQAAAVFEN--EERLRQAAELIGKA 161

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           +   V+  +F EA    Q    ++K+  +  +  +        L+   + D+ AA + +
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA--QVLVQLHRADYVAAQKCV 218

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 13/150 (8%)

Query: 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEA 284
           L +A +L+   D   KA+ L  +AA  FE     +        +   + +     +++EA
Sbjct: 119 LDRAGKLMEPLD-LSKAVHLYQQAAAVFE--NEERLRQA-AELIGKASRLLVRQQKFDEA 174

Query: 285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344
              L++   +   E        K    +              +  C      +     G 
Sbjct: 175 AASLQKEKSM-YKEMENYPTCYKK--CIAQVLVQLHRADYVAAQKCVRESYSIP----GF 227

Query: 345 TDPRVGETCRYLAEAHVQ--ALQFSEAQKF 372
           +          L +A+ +    Q     + 
Sbjct: 228 SGSEDCAALEDLLQAYDEQDEEQLLRVCRS 257

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 46/295 (15%), Positives = 93/295 (31%), Gaps = 52/295 (17%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T         A  A Q+ L        E  P      + LA  Y  T   +++    +
Sbjct: 106 GITQAENENEQAAIVALQRCL--------ELQPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
           N ++   K         +         +   M++      +L+   ++Y +A  Q   + 
Sbjct: 158 NWIKQNPKYK------YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211

Query: 559 GIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVALNQMGLAC 610
             + Q  +GV++++ G ++ + D+F  A+         +   +      G  L       
Sbjct: 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAAL-------TVRPEDYSLWNRLGATLANGD--- 261

Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670
             R    EAVE +  A  I         P  +    NL  +   +G   +A+      + 
Sbjct: 262 --RS--EEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

Query: 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEV 725
           +             ++++     +        R A SL    +     N   ++V
Sbjct: 310 L--------QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 45/321 (14%), Positives = 88/321 (27%), Gaps = 43/321 (13%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                   G     I  +E +I   P        A A       LG T A     + +++
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDP------GDAEA----WQFLGITQAENENEQAAIV 120

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
                LE+         P   +    LA ++       +A +  +  +  +         
Sbjct: 121 ALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172

Query: 390 EEAADRRL--MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
           ++ +      M          E   E  + A       + D     +   +G  +     
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEA----AHQNGDMIDPDLQTGLGVLFHLSGE 228

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507
           ++ A  A+  AL           P   S++ RL        +  E+      AL I  +P
Sbjct: 229 FNRAIDAFNAAL--------TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QP 278

Query: 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQMGV 566
                         ++     ++    +A+     AL +       QQ     I   +  
Sbjct: 279 -------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331

Query: 567 MYYMLGNYSDSYDSFKNAISK 587
              +  +  D  + F+ A   
Sbjct: 332 ALRIALSLMDQPELFQAANLG 352

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 16/140 (11%)

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           + S N+  Q    +  + K Y               + G+     G+   +    + AI 
Sbjct: 34  WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAI- 92

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646
                  +       A   +G+   +  +   A+   +    +         P+ L    
Sbjct: 93  ------LQDPGDA-EAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALM 137

Query: 647 NLAGTYDAIGRLDDAIEILE 666
            LA +Y       DA E L+
Sbjct: 138 ALAVSYTNTSHQQDACEALK 157

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 15/136 (11%)

Query: 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590
            E E+A   ++   + ++     Q+    +  +  +          +  + +        
Sbjct: 3   MEFERAKAAVESDTEFWDKM---QAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTE 59

Query: 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
              +          + GL  ++   +   +   E A   + Q+  P   +    +  L  
Sbjct: 60  NPFKDWP----GAFEEGLKRLKEGDLPVTILFMEAA---ILQD--PGDAE---AWQFLGI 107

Query: 651 TYDAIGRLDDAIEILE 666
           T         AI  L+
Sbjct: 108 TQAENENEQAAIVALQ 123

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 41/303 (13%), Positives = 89/303 (29%), Gaps = 65/303 (21%)

Query: 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI-GDTYLSLSRYDEAGFAYQKAL 459
           +  +   H  +               + + +AS+              Y++A  A+ KA+
Sbjct: 1   MGSSHHHHHHSSG----------LVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI 50

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519
                   E +   A  ++  A++ +   +L  + ++ + AL +             A+ 
Sbjct: 51  --------EENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DS-------SAATA 93

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSD 576
                ++Y      ++A  + +KAL+    +           +    +G +   L     
Sbjct: 94  YYGAGNVYVVKEMYKEAKDMFEKALRAGMENG----------DLFYMLGTVLVKLEQPKL 143

Query: 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
           +    + A+       E        A  Q G+       ++EA+  F             
Sbjct: 144 ALPYLQRAV-------ELNENDT-EARFQFGMCLANEGMLDEALSQFAAVTEQ------- 188

Query: 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696
             P     + N   TY      + A+E+L+  + I         PD          L   
Sbjct: 189 -DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--------QPDHMLALHAKKLLGHH 239

Query: 697 AGR 699
              
Sbjct: 240 HHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 35/308 (11%), Positives = 81/308 (26%), Gaps = 78/308 (25%)

Query: 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
           S   ++ +  ++ +   +         ++       Q     +  G  E +   +T  +E
Sbjct: 4   SHHHHHHSSGLVPRGSHM--------ASMT----GGQQMGRGSEFGDYEKAAEAFTKAIE 51

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD------NGSPASLE 390
                    +          A       +   A  F   AL++                 
Sbjct: 52  E--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG------- 96

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYD 449
                   G +   K  ++ A +    A    +    ++ ++      +G   + L +  
Sbjct: 97  -------AGNVYVVKEMYKEAKDMFEKA----LRAGMENGDLF---YMLGTVLVKLEQPK 142

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
            A    Q+A+        E +        +        G L E+ S           P  
Sbjct: 143 LALPYLQRAV--------ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DP-- 190

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI-YNDAPGQQSTVAGIEAQ--MGV 566
                  A    +    Y      E+A+++L KA+ I  +             A     +
Sbjct: 191 -----GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM----------LALHAKKL 235

Query: 567 MYYMLGNY 574
           + +   ++
Sbjct: 236 LGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 44/225 (19%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
            + +A +    A++ +K++        A        +  +  + E AL     A    + 
Sbjct: 38  DYEKAAEAFTKAIEENKED--------AIPYINFANLLSSVNELERALAFYDKA----LE 85

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
            D  A  A      G+ Y+    Y EA   ++KAL                +F  L  + 
Sbjct: 86  LDSSAATAY--YGAGNVYVVKEMYKEAKDMFEKAL-RAG-------MENGDLFYMLGTVL 135

Query: 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544
            +  + + +  Y + A+ +                         +   L++A+       
Sbjct: 136 VKLEQPKLALPYLQRAVEL--NE-------NDTEARFQFGMCLANEGMLDEALSQFAAVT 186

Query: 545 KIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAIS 586
           +     A          +A    GV Y    N   + +    AI 
Sbjct: 187 EQDPGHA----------DAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 35/191 (18%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
            A +  S+ +   A+   ++++E+          A A    +   G+ Y +    + +  
Sbjct: 63  FANLLSSVNELERALAFYDKALELDS------SAATA----YYGAGNVYVVKEMYKEAKD 112

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
            +   L              G+    L    V+  Q   A  + Q A+++++++      
Sbjct: 113 MFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------ 158

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRY 448
            EA  +   G+    +G  + AL             +   A+      + G TY      
Sbjct: 159 TEARFQF--GMCLANEGMLDEALSQFAAV----TEQDPGHADAFY---NAGVTYAYKENR 209

Query: 449 DEAGFAYQKAL 459
           ++A     KA+
Sbjct: 210 EKALEMLDKAI 220

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 69.3 bits (169), Expect = 5e-13
 Identities = 27/222 (12%), Positives = 64/222 (28%), Gaps = 30/222 (13%)

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
            +++EA     +A T ++    +        F++ AD   + G   E+ +    A + ++
Sbjct: 31  YKFEEAADLCVQAATIYR--LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK 88

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
                                         A+  L+ A++I+    GQ    A  + ++G
Sbjct: 89  S-----------------------GGNSVNAVDSLENAIQIFTHR-GQFRRGANFKFELG 124

Query: 566 VMYYM-LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624
            +    L +Y+ + D ++ A            +       +            EA +++ 
Sbjct: 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK--CFIKCADLKALDGQYIEASDIYS 182

Query: 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           +                   +        A      A   L+
Sbjct: 183 KLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 20/244 (8%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           E A +       Y      + AG ++ KA    K     N     + +V     +   G 
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGN 92

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYN 548
              +    ENA++I+            A+   ++  I E+ +++  +AI   + A + Y 
Sbjct: 93  SVNAVDSLENAIQIFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149

Query: 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
                 +       +   +  + G Y ++ D +   I         + +     L   GL
Sbjct: 150 Q-DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK-KGL 207

Query: 609 ACVQRYSINEAVELFEEARSI------------LEQECGPYHPDTLGVYSNLAGTYDAIG 656
             +       A    +E +S             L+      +       S     +D   
Sbjct: 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267

Query: 657 RLDD 660
           RLD 
Sbjct: 268 RLDK 271

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 33/238 (13%), Positives = 68/238 (28%), Gaps = 14/238 (5%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           Q    Y +  +L  +   +    + QK+   E +   G T     +          A   
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE--AGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 373 CQMALDIHKDNGSPASLEEAADR-RLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE 430
            + A+ I    G        A+    +G I E    D+  A++   LA      +   A 
Sbjct: 100 LENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                    D      +Y EA   Y K + +   N+     ++   F++           
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDA 215

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKI 546
             +    +          P       ++ L  +       +  +L +  K     +++
Sbjct: 216 VAAARTLQEGQSED----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 41/236 (17%)

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRI-------YEKPVPGVPPEEIASGLTDVSSI 526
               ++        G+  ++ SY    + +       Y         E  +   T+++  
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           Y+     ++A    ++ L+   +                 M    G   D+   ++  + 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNN-------VDCLEACAEMQVCRGQEKDALRMYEKIL- 115

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGVY 645
                 + ++     A   +G           + +E   +  S                 
Sbjct: 116 ------QLEADNLA-ANIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK--RRLAELLKEAGR 699
                +     R + A   L+ V+           P  + +K   ++  + KE  R
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILR--------FPSTEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 34/200 (17%)

Query: 224 LLKQARELISSGDNPQ------KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277
           +L++    I +G N Q      + + L +   + +      K S         +A  Y  
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 278 LGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
              Y++A    ++ ++  P       +            +     GQ +++L  Y     
Sbjct: 67  NRNYDKAYLFYKELLQKAP------NNVDC----LEACAEMQVCRGQEKDALRMY----- 111

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADR 395
             +++L + +        +L   +    +   +  +     L            + A  R
Sbjct: 112 --EKIL-QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM------QYA--R 160

Query: 396 RLMGLICETKGDHEAALEHL 415
              GL       +E A   L
Sbjct: 161 YRDGLSKLFTTRYEKARNSL 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 21/206 (10%), Positives = 56/206 (27%), Gaps = 32/206 (15%)

Query: 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN--------GSPASLEEAADRRLMGLIC 402
           +       A ++A Q  +A  + +  + ++ D             S   +     + L  
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64

Query: 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462
           +   +++ A           +    +        +  +  +   +  +A   Y+K L   
Sbjct: 65  KKNRNYDKAYLFYKEL----LQKAPNNVDCLE--ACAEMQVCRGQEKDALRMYEKIL--- 115

Query: 463 KTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
                +      +  + L +  Y    + ++        L           P ++     
Sbjct: 116 -----QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---------PTKMQYARY 161

Query: 522 DVSSIYESMNELEQAIKLLQKALKIY 547
                       E+A   LQK +  +
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRF 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.9 bits (159), Expect = 6e-12
 Identities = 42/245 (17%), Positives = 74/245 (30%), Gaps = 68/245 (27%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G    +L RYD A   +++AL        + +P        LA    + G +  +    
Sbjct: 11  LGVQLYALGRYDAALTLFERAL--------KENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 498 ENALRI--------------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543
           +  +                Y          E   G             LEQA+ +L+ A
Sbjct: 63  KTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG------------YLEQALSVLKDA 110

Query: 544 LKIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF- 599
            ++    A              Q G++Y +LG    +  S K A+    A+ +       
Sbjct: 111 ERVNPRYA----------PLHLQRGLVYALLGERDKAEASLKQAL----ALEDTPEIRSA 156

Query: 600 -GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL 658
                  MG     R   +EA+  + +A            P  L +    A      G+ 
Sbjct: 157 LAELYLSMG-----RL--DEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201

Query: 659 DDAIE 663
           ++A  
Sbjct: 202 EEAAR 206

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 47/245 (19%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           +     +LG+Y+ A+ + E++++  P      +   A       L  T   LG +  +L 
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENP------QDPEA----LYWLARTQLKLGLVNPALE 60

Query: 330 CYTTGLEVQKQV------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
              T +    +       L E         R   +         +A    + A  ++   
Sbjct: 61  NGKTLVARTPRYLGGYMVLSEA---YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443
                      +   GL+    G+ + A   L  A    +A +   E+ S   ++ + YL
Sbjct: 118 A------PLHLQ--RGLVYALLGERDKAEASLKQA----LALEDTPEIRS---ALAELYL 162

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES-KSYCENALR 502
           S+ R DEA   Y KAL        E  P    + VR A      GK  E+ ++    AL 
Sbjct: 163 SMGRLDEALAQYAKAL--------EQAPKDLDLRVRYASALLLKGKAEEAARAA---ALE 211

Query: 503 IYEKP 507
            +   
Sbjct: 212 HHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 42/246 (17%), Positives = 76/246 (30%), Gaps = 49/246 (19%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
            ++LG     LG+ + +L  +   L+         +P+  E   +LA   ++    + A 
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPAL 59

Query: 371 KFCQMALDIHKDNGSPASLEEA---------ADRRLMGLICETKGDHEAALEHLVLASMT 421
           +  +  +                        A  R        KG  E AL  L  A   
Sbjct: 60  ENGKTLVARTPRY------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA--- 110

Query: 422 MIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480
               N + A +       G  Y  L   D+A  + ++AL A +            +   L
Sbjct: 111 -ERVNPRYAPLHL---QRGLVYALLGERDKAEASLKQAL-ALEDT--------PEIRSAL 157

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
           A++Y   G+L E+ +    AL     P       +        +S      + E+A +  
Sbjct: 158 AELYLSMGRLDEALAQYAKALEQ--AP-------KDLDLRVRYASALLLKGKAEEAARAA 208

Query: 541 QKALKI 546
                 
Sbjct: 209 ALEHHH 214

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 30/270 (11%), Positives = 65/270 (24%), Gaps = 53/270 (19%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
                  +G H           +       +A        +G  YL     ++A    +K
Sbjct: 10  HSSGLVPRGSHMGDQ-----NPLKTDKGRDEA--RDAYIQLGLGYLQRGNTEQAKVPLRK 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           AL        E  P+ A     LA ++    + + +      AL               A
Sbjct: 63  AL--------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DS-------RNA 105

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALK--IYNDAPGQQSTVAGIEAQ--MGVMYYMLGN 573
             L +           E+A + L +A +  +Y +                +G++   +  
Sbjct: 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS---------RVFENLGLVSLQMKK 156

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
            + + + F+ ++                   +M     +      A + ++         
Sbjct: 157 PAQAKEYFEKSL-------RLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQG---- 204

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                                    D A  
Sbjct: 205 ----GGQNARSLLLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 44/219 (20%)

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
           ++       KT+K          +++L   Y + G   ++K     AL            
Sbjct: 19  SHMGDQNPLKTDK--GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL------------ 64

Query: 514 EEIASGLTDVSS----IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ--MGVM 567
            EI     D  +    ++++  E + A +  +KAL   +                  G  
Sbjct: 65  -EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---------RVLNNYGGF 114

Query: 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627
            Y    Y ++Y     A                     +GL  +Q     +A E FE++ 
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPE------RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168

Query: 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
            +        + +   V   +A           A +  +
Sbjct: 169 RL--------NRNQPSVALEMADLLYKEREYVPARQYYD 199

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 35/177 (19%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y      EQA   L+KAL+I  + A          +A   + V++        + + ++
Sbjct: 46  GYLQRGNTEQAKVPLRKALEIDPSSA----------DAHAALAVVFQTEMEPKLADEEYR 95

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A++          +     LN  G    ++    EA +   EA    +      +P+  
Sbjct: 96  KALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEA---SQD---TLYPERS 141

Query: 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699
            V+ NL      + +   A E  E  + +        N +       +A+LL +   
Sbjct: 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 23/142 (16%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                   +Y EA   L ++ +  +     E +         LG     + +   +   +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTL---YPERSRV----FENLGLVSLQMKKPAQAKEYF 164

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              L +        +         +A+   +  ++  A+++  +       N    SL  
Sbjct: 165 EKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN--ARSL-- 212

Query: 392 AADRRLMGLICETKGDHEAALE 413
                L   + +   D + A  
Sbjct: 213 ----LLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 36/281 (12%), Positives = 78/281 (27%), Gaps = 82/281 (29%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
              Y   G   +A   L +++EI P        A A    H  L   +    + +     
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDP------SSADA----HAALAVVFQTEMEPK----- 88

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                                                 A +  + AL     N       
Sbjct: 89  -------------------------------------LADEEYRKALASDSRNA------ 105

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
                   G     +  +E A + L+ A      +    E + V  ++G   L + +  +
Sbjct: 106 RV--LNNYGGFLYEQKRYEEAYQRLLEA----SQDTLYPERSRVFENLGLVSLQMKKPAQ 159

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510
           A   ++K+L          +    SV + +AD+  +  +   ++ Y +   +        
Sbjct: 160 AKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GG--- 206

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551
               + A  L     + +   + + A     +  ++Y  + 
Sbjct: 207 ----QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 1e-11
 Identities = 57/434 (13%), Positives = 105/434 (24%), Gaps = 73/434 (16%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
           ++ALE   R            P  + V+ +        +L      +PVL Q+  +    
Sbjct: 405 KQALETVQRLLPVLCQAHGLTP--DQVVAIASHDGGKQALETVQRLLPVLCQTHGL---- 458

Query: 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358
                 +A              L  ++         L V  Q  G T  +V         
Sbjct: 459 -TPAQVVA----IASHDGGKQALETVQ-------QLLPVLCQAHGLTPDQV-VAIASNIG 505

Query: 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418
                            A  +  D                G   +     +  L  L  A
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQ--------VVAIASNGGGKQALETVQRLLPVLCQA 557

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478
                    D  VA    S G    +L           +A              VA    
Sbjct: 558 ----HGLTPDQVVAI--ASNGGGKQALETVQRLLPVLCQAH-GLTQV-----QVVA---- 601

Query: 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538
                       +++    +  L +  +     P + +A           S +  +QA++
Sbjct: 602 -----IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA---------IASHDGGKQALE 647

Query: 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598
            +Q+ L +   A G         A  G     L            A              
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLTQEQ 700

Query: 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL 658
             VA+           ++   + +  +A  +         PD +   ++  G   A+  +
Sbjct: 701 V-VAIASNNGGKQALETVQRLLPVLCQAHGL--------TPDQVVAIASNGGGKQALETV 751

Query: 659 DDAIEILEFVVGIR 672
              + +L    G+ 
Sbjct: 752 QRLLPVLCQAHGLT 765

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.0 bits (150), Expect = 5e-10
 Identities = 52/443 (11%), Positives = 110/443 (24%), Gaps = 79/443 (17%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
            Q   + S+    ++ALE   R            P    V+ +        +L      +
Sbjct: 190 AQVVAIASNN-GGKQALETVQRLLPVLCQAHGLTP--AQVVAIASHDGGKQALETMQRLL 246

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           PVL Q+  +P      +  +A              L  ++  L        +        
Sbjct: 247 PVLCQAHGLP-----PDQVVA----IASNIGGKQALETVQRLLPVLCQAHGL-------- 289

Query: 346 DPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
            P              QAL            A  +     +P  +   A         + 
Sbjct: 290 TPDQVVAIASHGGGK-QALETVQRLLPVLCQAHGL-----TPDQVVAIASH---DGGKQA 340

Query: 405 KGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
               +  L  L  A               +   S G    +L           +A     
Sbjct: 341 LETVQRLLPVLCQA----HGLTPDQVVAIA---SNGGGKQALETVQRLLPVLCQAH-GLT 392

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523
            ++                     G  +  ++  +  L +  +   G+ P+++ +     
Sbjct: 393 PDQ--------------VVAIASNGGKQALETV-QRLLPVLCQ-AHGLTPDQVVA----- 431

Query: 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583
                S +  +QA++ +Q+ L +     G         A        L            
Sbjct: 432 ---IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
           A           +    VA+           ++   + +  +A  +         PD + 
Sbjct: 489 AH--------GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL--------TPDQVV 532

Query: 644 VYSNLAGTYDAIGRLDDAIEILE 666
             ++  G   A+  +   + +L 
Sbjct: 533 AIASNGGGKQALETVQRLLPVLC 555

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.6 bits (149), Expect = 6e-10
 Identities = 58/437 (13%), Positives = 112/437 (25%), Gaps = 78/437 (17%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             ++ALE   R                 V+ +        +L      +PVL Q      
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQ--VQVVAIASNIGGKQALETVQRLLPVLCQ-----A 625

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
                   +A              L  ++  L        +                   
Sbjct: 626 HGLTPAQVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPD---------------Q 666

Query: 357 AEAHVQALQFSEAQKFCQMALDIH-KDNG-SPASLEEAADRRLMGLICETKGDHEAALEH 414
             A        +A +  Q  L +  + +G +   +   A         +     +  L  
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN---NGGKQALETVQRLLPV 723

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L  A         D  VA    S G    +L           +A       +        
Sbjct: 724 LCQA----HGLTPDQVVA--IASNGGGKQALETVQRLLPVLCQAH-GLTPAQVVAI---- 772

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
                     +  G         + AL   ++ +P +  +   + L  V +I  ++   +
Sbjct: 773 ---------ASNIG--------GKQALETVQRLLPVLCQDHGLT-LAQVVAIASNIG-GK 813

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
           QA++ +Q+ L +   A G         A        L                       
Sbjct: 814 QALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDH--------- 864

Query: 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654
                G+  +Q  +A        +A+E  +    +L Q+ G      + + SN  G   A
Sbjct: 865 -----GLTPDQ-VVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN--GGKQA 916

Query: 655 IGRLDDAIEILEFVVGI 671
           +  +   + +L    G+
Sbjct: 917 LETVQRLLPVLCQDHGL 933

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 7e-07
 Identities = 27/233 (11%), Positives = 63/233 (27%), Gaps = 40/233 (17%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
                +L           +A       +                  +  G  +  ++  +
Sbjct: 199 NGGKQALETVQRLLPVLCQAH-GLTPAQVVAI-------------ASHDGGKQALETM-Q 243

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
             L +  +   G+PP+++ +          S    +QA++ +Q+ L +   A G      
Sbjct: 244 RLLPVLCQ-AHGLPPDQVVA--------IASNIGGKQALETVQRLLPVLCQAHGLTPDQV 294

Query: 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618
              A  G     L            A                VA+           ++  
Sbjct: 295 VAIASHGGGKQALETVQRLLPVLCQAH-------GLTPDQV-VAIASHDGGKQALETVQR 346

Query: 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671
            + +  +A  +         PD +   ++  G   A+  +   + +L    G+
Sbjct: 347 LLPVLCQAHGL--------TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 391

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 16/146 (10%)

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
             S N  +QA++ +Q+ L +   A G         A        L            A  
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH- 253

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646
                         VA+           ++   + +  +A  +         PD +   +
Sbjct: 254 ------GLPPDQV-VAIASNIGGKQALETVQRLLPVLCQAHGL--------TPDQVVAIA 298

Query: 647 NLAGTYDAIGRLDDAIEILEFVVGIR 672
           +  G   A+  +   + +L    G+ 
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLT 324

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 42/281 (14%)

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
            +L EA    ++G+  +  G    ALE L+  +  +       +   +   +        
Sbjct: 113 TALPEATHEDIVGVGKQWSGAR--ALEALLTDAGELRGPPLQLDTGQL---VKIAKRGGV 167

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
              EA  A + ALT    N                 + +  G  +  ++  +  L +  +
Sbjct: 168 TAMEAVHASRNALTGAPLNLTPAQVVA---------IASNNGGKQALETV-QRLLPVLCQ 217

Query: 507 PVPGVPPEEIASGLT-DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
                     A GLT        S +  +QA++ +Q+ L +   A G         A   
Sbjct: 218 ----------AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNI 267

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625
                L            A                VA+   G          +A+E  + 
Sbjct: 268 GGKQALETVQRLLPVLCQAH-------GLTPDQV-VAIASHGGG-------KQALETVQR 312

Query: 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
              +L Q  G   PD +   ++  G   A+  +   + +L 
Sbjct: 313 LLPVLCQAHG-LTPDQVVAIASHDGGKQALETVQRLLPVLC 352

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 32/191 (16%)

Query: 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568
           PG  P   A  L ++++I      +E+A++L +KAL+++ +     S        +  + 
Sbjct: 2   PGSCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS-------NLASVL 53

Query: 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628
              G   ++   +K AI             F  A + MG    +   +  A++ +  A  
Sbjct: 54  QQQGKLQEALMHYKEAIRISPT--------FADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

Query: 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688
           I        +P     +SNLA  +   G + +AI      + +         PD  D   
Sbjct: 106 I--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYC 149

Query: 689 RLAELLKEAGR 699
            LA  L+    
Sbjct: 150 NLAHCLQIVCD 160

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.0 bits (147), Expect = 9e-10
 Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 42/243 (17%)

Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
           P  A     LA++    G + E+      AL ++    P                + +  
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLAS-----VLQQQ 56

Query: 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590
            +L++A+   ++A++I           A   + MG     + +   +   +  AI    A
Sbjct: 57  GKLQEALMHYKEAIRISPTF-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
             +        A + +        +I EA+  +  A  +         PD    Y NLA 
Sbjct: 110 FAD--------AHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYCNLAH 153

Query: 651 TYDAIGRLDDAIEILEFVVGIREEKL-----GTANPD-----VDDEKRRLAELLKEAGRV 700
               +    D  E ++ +V I  ++L      + +P            R A   +     
Sbjct: 154 CLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLC 213

Query: 701 RSR 703
             +
Sbjct: 214 LDK 216

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 34/262 (12%), Positives = 83/262 (31%), Gaps = 38/262 (14%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +  I   +G+ E A+           A +   E A+   ++        +  EA   Y++
Sbjct: 15  LANIKREQGNIEEAVRLY------RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           A+           P  A  +  + +       ++ +      A++I   P         A
Sbjct: 69  AIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NP-------AFA 111

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
              ++++SI++    + +AI   + ALK+   + DA             +     ++ ++
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC----------NLAHCLQIVCDW 161

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
           +D  +  K  +S +    E+             +     +   +A+        + +   
Sbjct: 162 TDYDERMKKLVSIVADQLEKNR--LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINV 219

Query: 635 GPYHPDTLGVYSNLAGTYDAIG 656
               P        L+     +G
Sbjct: 220 LHKPPYEHPKDLKLSDGRLRVG 241

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 31/215 (14%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +A I    G   EA+ +  +++E+       E A A       L       G+L+ +
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV-----FPEFAAAHS----NLASVLQQQGKLQEA 62

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           LM Y   + +         P   +    +     +      A +    A+ I+       
Sbjct: 63  LMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---- 110

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
               A     +  I +  G+   A+     A   +       +     C++      +  
Sbjct: 111 ----ADAHSNLASIHKDSGNIPEAIASYRTA---LKLKPDFPDAY---CNLAHCLQIVCD 160

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           + +     +K ++       +N          +  
Sbjct: 161 WTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 31/207 (14%)

Query: 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
           + P   ++   LA    +     EA +  + AL++  +  +  S         +  + + 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS--------NLASVLQQ 55

Query: 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
           +G  + AL H   A    I        A    ++G+T   +     A   Y +A+     
Sbjct: 56  QGKLQEALMHYKEA----IRISPTF--ADAYSNMGNTLKEMQDVQGALQCYTRAI----- 104

Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
              + +PA A     LA ++  +G + E+ +    AL++  KP       +      +++
Sbjct: 105 ---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KP-------DFPDAYCNLA 152

Query: 525 SIYESMNELEQAIKLLQKALKIYNDAP 551
              + + +     + ++K + I  D  
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVADQL 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 39/313 (12%), Positives = 77/313 (24%), Gaps = 50/313 (15%)

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLS 446
           S        ++ +  +     E  L  +    +   + +D+ A++       G  Y SL 
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLY---ERGVLYDSLG 57

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   + +AL A +       P +  VF  L     + G    +    ++ L +   
Sbjct: 58  LRALARNDFSQAL-AIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--D 107

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
           P              +           + A   L    +                  + +
Sbjct: 108 P-------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPFRSLWLYL 153

Query: 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626
               L     + +  K    K       +  +  V      ++               + 
Sbjct: 154 AEQKLDEK-QAKEVLKQHFEKSDKE---QWGWNIVEFYLGNISEQTLM--ERLKADATDN 207

Query: 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE 686
            S+                  L   Y ++G LD A  + +  V          N     E
Sbjct: 208 TSL--------AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFVE 251

Query: 687 KRRLAELLKEAGR 699
            R     L   G+
Sbjct: 252 HRYALLELSLLGQ 264

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 40/269 (14%), Positives = 71/269 (26%), Gaps = 42/269 (15%)

Query: 237 NPQKALELAL-RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI- 294
            P    E+ L R  +     A      E    L+    +Y SLG    A     Q++ I 
Sbjct: 16  QPTLQQEVILARMEQILASRALTDD--ERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354
           P      +           LG      G  + +   + + LE+        DP       
Sbjct: 74  P------DMPEV----FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHL 115

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
               A     +   AQ           ++           R L   + E K D + A E 
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPND---------PFRSLWLYLAEQKLDEKQAKEV 166

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L        ++ +      V+  +G+     +  +                       ++
Sbjct: 167 LKQHF--EKSDKEQWGWNIVEFYLGNISE-QTLMERLKADATDNT--------SLAEHLS 215

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRI 503
                L   Y   G L  + +  + A+  
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN 244

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 35/273 (12%), Positives = 75/273 (27%), Gaps = 58/273 (21%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
            G++ ++ G    A      A    +A      EV +    +G        +D A  A+ 
Sbjct: 49  RGVLYDSLGLRALARNDFSQA----LAIRPDMPEVFN---YLGIYLTQAGNFDAAYEAFD 101

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             L        E  P      +         G+ + ++       +      P  P   +
Sbjct: 102 SVL--------ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSL 149

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
              L       E   + +QA ++L++  +  +            +    ++ + LGN S+
Sbjct: 150 WLYLA------EQKLDEKQAKEVLKQHFEKSDK----------EQWGWNIVEFYLGNISE 193

Query: 577 SYDSFKNAISKLRAIGERKS----AFF--GVALNQMGLACVQRYSINEAVELFEEARSIL 630
                +   +                F  G     +G         + A  LF+ A +  
Sbjct: 194 QTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLG-----DL--DSATALFKLAVAN- 244

Query: 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
                  +      +         +G+  D + 
Sbjct: 245 -------NVHNFVEHRYALLELSLLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 38/324 (11%), Positives = 73/324 (22%), Gaps = 95/324 (29%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
            V+A       Q    +  +EQ +    + +  E A        + G  Y  LG    + 
Sbjct: 9   EVLAVPLQPTLQQEVILARMEQILASRALTD-DERAQL----LYERGVLYDSLGLRALAR 63

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388
             ++  L +         P        + E                       +      
Sbjct: 64  NDFSQALAI--------RPD-------MPEVF---------------------NY----- 82

Query: 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSR 447
                    +G+     G+ +AA E         +  +           + G       R
Sbjct: 83  ---------LGIYLTQAGNFDAAYEAFDSV----LELDPTYNYAHL---NRGIALYYGGR 126

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR--TGKLRESKSYCENALRIYE 505
              A             N                         +  + K   E   + +E
Sbjct: 127 DKLAQDDLLAFY-QDDPNDPFRS-------------LWLYLAEQKLDEKQAKEVLKQHFE 172

Query: 506 KPVPGVPP-EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA-- 562
           K          +   L ++S        +E+          +              E   
Sbjct: 173 KSDKEQWGWNIVEFYLGNISE----QTLMERLKADATDNTSLAEHLS---------ETNF 219

Query: 563 QMGVMYYMLGNYSDSYDSFKNAIS 586
            +G  Y  LG+   +   FK A++
Sbjct: 220 YLGKYYLSLGDLDSATALFKLAVA 243

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.2 bits (148), Expect = 7e-10
 Identities = 41/287 (14%), Positives = 85/287 (29%), Gaps = 54/287 (18%)

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE 505
             ++     ++ L + +                 A      GK L  +  Y   A  +  
Sbjct: 83  EMEKTLQQMEEVLGSAQVE---------------AQALMLKGKALNVTPDYSPEAEVLLS 127

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           K V   P  E+      +  +Y    ++  A      AL    +    Q         + 
Sbjct: 128 KAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ--------NLS 177

Query: 566 VMYYMLGNYSDSYDSFKN--AISKL-RAIGERKSAFFGVALNQMGLACVQRYS------- 615
           ++   L   S    S     ++ +   A+        G +   +G A +  Y        
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DGRSWYILGNAYLSLYFNTGQNPK 235

Query: 616 -INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674
              +A+  + +A  +  +     +PD   ++ N A  +       +A+E       +   
Sbjct: 236 ISQQALSAYAQAEKVDRKA--SSNPD---LHLNRATLHKYEESYGEALEGFSQAAALDPA 290

Query: 675 ------KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715
                 +       +     RL  LL+  G+ + +K QS+   L   
Sbjct: 291 WPEPQQREQQLLEFLS----RLTSLLESKGKTKPKKLQSMLGSLRPA 333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 24/218 (11%)

Query: 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495
             +G+ Y        A   +  ALT  K      + ++    ++       +  + +S  
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 496 YCENALRIYEKPVPGVPPEEIASG---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
             + A+++               G   L+   +  ++    +QA+    +A K+   A  
Sbjct: 201 QAKLAVQMD----VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS- 255

Query: 553 QQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610
                +  +       ++    +Y ++ + F  A            A+      +     
Sbjct: 256 -----SNPDLHLNRATLHKYEESYGEALEGFSQAA-------ALDPAWPE-PQQREQQLL 302

Query: 611 VQRYSINEAVELFEEARSI-LEQECGPYHPDTLGVYSN 647
                +   +E   + +   L+   G   P  LG   +
Sbjct: 303 EFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGD 340

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 39/309 (12%), Positives = 91/309 (29%), Gaps = 39/309 (12%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN-EAIPVLEQSIEIPVI 297
           +K L+       S +              L +          Y+ EA  +L +++++   
Sbjct: 85  EKTLQQMEEVLGSAQ---------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-- 133

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
               E   A      QLG+ Y   G + ++  C++  L   K  +   +  +        
Sbjct: 134 ---PELVEA----WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD 186

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                +    ++ +  ++A+ +   +G    +   A   L     +     + AL     
Sbjct: 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246

Query: 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477
           A      + + +    +  +    +     Y EA   + +A            PA     
Sbjct: 247 AEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA--------ALDPAWPEPQ 295

Query: 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537
            R   +     +L        + L    K  P    + +   L   + +    +   Q+ 
Sbjct: 296 QREQQLLEFLSRL-------TSLLESKGKTKP-KKLQSMLGSLRP-AHLGPCGDGRYQSA 346

Query: 538 KLLQKALKI 546
              +  L++
Sbjct: 347 SGQKMTLEL 355

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.8 bits (141), Expect = 8e-10
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 40/210 (19%)

Query: 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           + ND   +V   D   G ++    RY +A    ++          +       V + L  
Sbjct: 1   MGNDDIRQVYYRD--KGISHAKAGRYSQAVMLLEQVY--------DADAFDVDVALHLGI 50

Query: 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
            Y +TG +       E +L     P       +     T +   Y  + + + A+ LL K
Sbjct: 51  AYVKTGAVDRGTELLERSLAD--AP-------DNVKVATVLGLTYVQVQKYDLAVPLLIK 101

Query: 543 ALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599
             +    +             +  +GV    LG + ++ DSFK A+         +    
Sbjct: 102 VAEANPINF----------NVRFRLGVALDNLGRFDEAIDSFKIAL-------GLRPNEG 144

Query: 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629
                 +  +  Q     EA+  F++A  +
Sbjct: 145 K-VHRAIAFSYEQMGRHEEALPHFKKANEL 173

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.1 bits (121), Expect = 4e-07
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 36/192 (18%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
            G+     G +  A+  L          +  D +VA     +G  Y+     D      +
Sbjct: 14  KGISHAKAGRYSQAVMLLEQV----YDADAFDVDVA---LHLGIAYVKTGAVDRGTELLE 66

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           ++L A         P    V   L   Y +  K   +             P         
Sbjct: 67  RSL-ADA-------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NP-------IN 109

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNY 574
            +    +    +++   ++AI   + AL +  +           +    +   Y  +G +
Sbjct: 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG---------KVHRAIAFSYEQMGRH 160

Query: 575 SDSYDSFKNAIS 586
            ++   FK A  
Sbjct: 161 EEALPHFKKANE 172

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.9 bits (110), Expect = 9e-06
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 35/191 (18%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
               +   G+Y++A+ +LEQ  +                   + LG  Y   G ++    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADA------FDVDV----ALHLGIAYVKTGAVDRGTE 63

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
                L           P   +    L   +VQ  ++  A        + +  N      
Sbjct: 64  LLERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------ 109

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRY 448
                R  +G+  +  G  + A++   +A    +     + +V     +I  +Y  + R+
Sbjct: 110 FNVRFR--LGVALDNLGRFDEAIDSFKIA----LGLRPNEGKVHR---AIAFSYEQMGRH 160

Query: 449 DEAGFAYQKAL 459
           +EA   ++KA 
Sbjct: 161 EEALPHFKKAN 171

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 27/216 (12%), Positives = 53/216 (24%), Gaps = 8/216 (3%)

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
           +     +    D E                RY E        L   + +           
Sbjct: 60  IIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP--EFQQFLQW 117

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
              +A    +           +  L      +       I + +   ++IY     L++ 
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI---ANIYAENGYLKKG 174

Query: 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
           I L ++ LK        +     +        Y+   Y +S      AI     I     
Sbjct: 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA- 233

Query: 597 AFFGVALNQMGLACVQRYSINEAVE-LFEEARSILE 631
              G    Q G    +       +E  +++A    +
Sbjct: 234 -LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 19/177 (10%), Positives = 48/177 (27%), Gaps = 4/177 (2%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +      K D+E  +  L       +      +   ++ +I + Y       +    +++
Sbjct: 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
            L   +    +N      V    A       +  ES      A+ I  +         I 
Sbjct: 181 ILKQLE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIG 236

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
                       +   E  I+   K    + D     +    +  ++  + +   ++
Sbjct: 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHHHH 293

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 17/153 (11%), Positives = 43/153 (28%), Gaps = 4/153 (2%)

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
            E      D   +       ++    +   LK     P +       +  +        +
Sbjct: 72  IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVD 130

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
           Y       K  +++     +     +    N +     +   + + ++LFE+    LE  
Sbjct: 131 YEYCILELKKLLNQQLTGIDVYQNLY--IENAIANIYAENGYLKKGIDLFEQILKQLEAL 188

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                   + V  N A       R ++++  + 
Sbjct: 189 -HDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 47/258 (18%)

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
           E+  + +        QL   Y        +       L+         DP+        A
Sbjct: 2   EKANQVSNI----KTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRA 49

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-CETKGDHEAALEHLV 416
           E +       +AQ+  + AL I  D+       E  +    G   C        ++ +  
Sbjct: 50  EIYQYLKVNDKAQESFRQALSIKPDSA------EINNN--YGWFLCGRLNRPAESMAYFD 101

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
            A    +A+         + + G       ++  A    +++L A         P     
Sbjct: 102 KA----LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPA 149

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
           F  LA      G+L ++  Y +         V  +  +++  G             L  A
Sbjct: 150 FKELARTKMLAGQLGDADYYFKKYQSR----VEVLQADDLLLGWKI-------AKALGNA 198

Query: 537 IKLLQKALKI---YNDAP 551
               +   ++   +  + 
Sbjct: 199 QAAYEYEAQLQANFPYSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 39/199 (19%)

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKN 583
            Y    +  QA   ++ ALK                A      +Y  L     + +SF+ 
Sbjct: 17  EYMRGQDYRQATASIEDALKSDPKNE---------LAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 584 AISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
           A+S                 N  G   C +     E++  F++A +       P +P   
Sbjct: 68  ALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD------PTYPTPY 113

Query: 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS 702
               N        G+   A   L+  +           P      + LA     AG++  
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGD 165

Query: 703 -----RKAQSLETLLDANS 716
                +K QS   +L A+ 
Sbjct: 166 ADYYFKKYQSRVEVLQADD 184

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 23/237 (9%), Positives = 60/237 (25%), Gaps = 37/237 (15%)

Query: 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
           T            A+R          P++       ++     M +       +Q+ L +
Sbjct: 2   TADGPRELLQLRAAVRHR--------PQD-FVAWLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606
           +              A++G + +    ++++    + A           +         +
Sbjct: 53  HPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQAS--------DAAPEHPGIALWL 97

Query: 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
           G A         A   +  A  +         P+   + + L      +        +  
Sbjct: 98  GHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVLSA 149

Query: 667 FVVGIREEKLGTANP-----DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRV 718
            V     + +G   P     +      +LA     A  + +       T + +   +
Sbjct: 150 QVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPL 206

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 33/236 (13%), Positives = 54/236 (22%), Gaps = 41/236 (17%)

Query: 279 GQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
                 +  L  ++   P      +  +A     + L D    +G      M    GL +
Sbjct: 3   ADGPRELLQLRAAVRHRP------QDFVA----WLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397
                    P   E    L        + +EA    Q A D   ++              
Sbjct: 53  --------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH--------PGIALW 96

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +G   E  G  EAA      A         +    +    + +    L  +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRA----HQLLPEEPYIT--AQLLNWRRRLCDWRALDVLSAQ 150

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
              A     G   P         A +        +       A  I     P  P 
Sbjct: 151 VRAAVAQGVGAVEP--------FAFLSEDASAAEQLACARTRAQAIAASVRPLAPT 198

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 24/146 (16%), Positives = 38/146 (26%), Gaps = 23/146 (15%)

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
            D    L  L  A   +    QD         + D  L +        A Q+ L      
Sbjct: 3   ADGPRELLQLRAA---VRHRPQDFVAW---LMLADAELGMGDTTAGEMAVQRGL------ 50

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
               HP       RL  +     +  E+    + A      P       E       +  
Sbjct: 51  --ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--AP-------EHPGIALWLGH 99

Query: 526 IYESMNELEQAIKLLQKALKIYNDAP 551
             E   + E A     +A ++  + P
Sbjct: 100 ALEDAGQAEAAAAAYTRAHQLLPEEP 125

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 30/194 (15%)

Query: 320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379
           M       L+     +           P+       LA+A +     +  +   Q  L +
Sbjct: 1   MTADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439
           H  +              +G +  T+  H  A   L  AS      D   E   +   +G
Sbjct: 53  HPGH--------PEAVARLGRVRWTQQRHAEAAVLLQQAS------DAAPEHPGIALWLG 98

Query: 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
                  + + A  AY +A         +  P    +  +L +   R    R        
Sbjct: 99  HALEDAGQAEAAAAAYTRAH--------QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150

Query: 500 ALRIYEKPVPGVPP 513
                 + V  V P
Sbjct: 151 VRAAVAQGVGAVEP 164

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 31/172 (18%)

Query: 527 YESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           + S    E  ++ LQ  ++    ++           A +G  Y    +YS+S  +++ A+
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQW--------ALLGEYYLWQNDYSNSLLAYRQAL 71

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
              +  GE    +  +A   +      ++   +   + ++A   L  +        L   
Sbjct: 72  ---QLRGENAELYAALA--TVLYYQASQHMTAQTRAMIDKA---LALD--SNEITAL--- 118

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697
             LA           AIE+         +K+   N      + +L E +  A
Sbjct: 119 MLLASDAFMQANYAQAIELW--------QKVMDLNSP-RINRTQLVESINMA 161

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 45/200 (22%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
           ++   +   Q   D      S  + E                  +  +           A
Sbjct: 2   KWQAVRAEYQRQRDPLHQFASQQNPEAQLQAL------------QDKIR----------A 39

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           N Q++E  ++   +G+ YL  + Y  +  AY++AL      +GEN      ++  LA + 
Sbjct: 40  NPQNSEQWAL---LGEYYLWQNDYSNSLLAYRQALQL----RGENA----ELYAALATVL 88

Query: 485 NRTGK---LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
                     ++++  + AL +              + L  ++S         QAI+L Q
Sbjct: 89  YYQASQHMTAQTRAMIDKALAL--DS-------NEITALMLLASDAFMQANYAQAIELWQ 139

Query: 542 KALKIYNDAPGQQSTVAGIE 561
           K + + +    +   V  I 
Sbjct: 140 KVMDLNSPRINRTQLVESIN 159

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 29/141 (20%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y    + ++AI+  QKAL++    A          EA   +G  YY  G+Y ++ + ++
Sbjct: 10  AYYKQGDYDEAIEYYQKALELDPRSA----------EAWYNLGNAYYKQGDYDEAIEYYQ 59

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A+     +          A   +G A  ++   +EA+E +++A  +         P + 
Sbjct: 60  KALE----L---DPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSA 103

Query: 643 GVYSNLAGTYDAIGRLDDAIE 663
             + NL   Y   G  D+AIE
Sbjct: 104 EAWYNLGNAYYKQGDYDEAIE 124

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 40/157 (25%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G+ Y     YDEA   YQKAL        E  P  A  +  L + Y + G   E+  Y 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 58

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI--------YND 549
           + AL +   P         A    ++ + Y    + ++AI+  QKAL++        YN 
Sbjct: 59  QKALEL--DP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN- 108

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
                         +G  YY  G+Y ++ + ++ A+ 
Sbjct: 109 --------------LGNAYYKQGDYDEAIEYYQKALE 131

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
           LG   +A+P  E++I   +  +           ++ LG T+  LG+   +      G++ 
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAEC------YLGLGSTFRTLGEYRKAEAVLANGVKQ 56

Query: 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
                    P       + A       ++ +  +     +    D+ +  S ++A
Sbjct: 57  --------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
           L    +A   Y+KA+ +     G     +A  ++ L   +   G+ R++++   N ++ +
Sbjct: 3   LGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

Query: 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
                   P   A      + +  ++   EQ ++LL K +   +D   
Sbjct: 58  --------PNHQAL-RVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 17/104 (16%)

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677
           +AV  +E+A +      G    D    Y  L  T+  +G    A  +L            
Sbjct: 8   QAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVL--------ANGV 54

Query: 678 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND 721
              P+    +   A +L   GR      Q +E LL   +  ++D
Sbjct: 55  KQFPNHQALRVFYAMVLYNLGRYE----QGVELLLKIIAETSDD 94

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G   ++  Y E A+        G+  +++A     + S + ++ E  +A  +L   +K +
Sbjct: 4   GLEAQAVPYYEKAIAS------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            +          +     ++ Y LG Y    +     I++
Sbjct: 58  PNHQA-------LRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)

Query: 406 GDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
           G    A+ +   A    IA   Q  ++A     +G T+ +L  Y +A       +     
Sbjct: 4   GLEAQAVPYYEKA----IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV----- 54

Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
              +  P   ++ V  A +    G+  +        +  
Sbjct: 55  ---KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 21/141 (14%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
            +G   Y  G + D+   F+               +       +G          +A++ 
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALC--------MLDHYDARYFLGLGACRQSLGLYEQALQS 74

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682
           +     +          +      + A  +  +G LD A              L  A P 
Sbjct: 75  YSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSAR-----ALAAAQPA 121

Query: 683 VDDEKRRLAELLKEAGRVRSR 703
            +    R   +L+     + R
Sbjct: 122 HEALAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 21/139 (15%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G       ++D+A   +Q                 A  F+ L       G   ++    
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALC--------MLDHYDARYFLGLGACRQSLGLYEQALQSY 75

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
                +         P   A         +  + +L+ A      A  +    P      
Sbjct: 76  SYGALM--DINEPRFPFHAAE-------CHLQLGDLDGAESGFYSARALAAAQP----AH 122

Query: 558 AGIEAQMGVMYYMLGNYSD 576
             + A+ G M   +    D
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 17/126 (13%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +       G++++A  + +    +       +H  A++   + LG     LG  E +
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCML-------DHYDARY--FLGLGACRQSLGLYEQA 71

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           L  Y+ G  +        D        + AE H+Q      A+     A  +     +  
Sbjct: 72  LQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123

Query: 388 SLEEAA 393
           +L   A
Sbjct: 124 ALAARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 20/145 (13%)

Query: 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
             +         E    L     QA ++ +AQK  Q    +   +        A     +
Sbjct: 8   AMLR-GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------ARYFLGL 58

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
           G   ++ G +E AL+     ++    +  +           + +L L   D A   +  A
Sbjct: 59  GACRQSLGLYEQALQSYSYGAL---MDINEPRFP---FHAAECHLQLGDLDGAESGFYSA 112

Query: 459 LTAFKTNKGENHPAVASVFVRLADM 483
                       PA  ++  R   M
Sbjct: 113 R-----ALAAAQPAHEALAARAGAM 132

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 42/310 (13%), Positives = 87/310 (28%), Gaps = 57/310 (18%)

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           G ++  +          +           D  +   YL+  +Y          L   K +
Sbjct: 13  GSYQQCINEA-----QRVKPSSPERDVERDVFLYRAYLAQRKYGVV-------LDEIKPS 60

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
                 AV       A+          S S  +  +   ++ +         + L   +S
Sbjct: 61  SAPELQAVRM----FAEYL-------ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAAS 109

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IY      + A++ L +   +               A    +   L     +    K   
Sbjct: 110 IYFYDQNPDAALRTLHQGDSLE------------CMAMTVQILLKLDRLDLARKELKKMQ 157

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            +     +  +    +A   + LA      + +A  +F+E               TL + 
Sbjct: 158 DQ-----DEDATLTQLATAWVSLA-AGGEKLQDAYYIFQEMADK--------CSPTLLLL 203

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705
           +  A  + A GR + A  +L+  +          +    +    L  L +  G+      
Sbjct: 204 NGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTN 255

Query: 706 QSLETLLDAN 715
           + L  L DA+
Sbjct: 256 RYLSQLKDAH 265

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 25/255 (9%), Positives = 59/255 (23%), Gaps = 45/255 (17%)

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
           P+S  E    R+      +    +A +  L       ++   D    +        Y   
Sbjct: 59  PSSAPELQAVRMFAEYLASHSRRDAIVAELDRE----MSRSVDVTNTTFLLMAASIYFYD 114

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
              D A     +  +                      +  +  +L  ++   +       
Sbjct: 115 QNPDAALRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQD- 160

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
                   +   + L        +   L    + LQ A  I+ +   + S    +     
Sbjct: 161 -------EDATLTQL------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV-ELFE 624
             +   G +  +    + A+         K +     L  + +         E       
Sbjct: 208 ACHMAQGRWEAAEGVLQEAL--------DKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259

Query: 625 EARSILEQECGPYHP 639
           + +          HP
Sbjct: 260 QLKDA-----HRSHP 269

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 25/156 (16%)

Query: 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543
           +N      + K + + AL  +            +    ++  +Y  +  + +A K   ++
Sbjct: 10  WNEGVLAADKKDW-KGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRS 63

Query: 544 LKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRA--------IGE 593
           +                 A  Q G++YY    Y  +    K A+ +LR         +G 
Sbjct: 64  INRDKHLA---------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           +   F    L  +     ++    +A E    A S+
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            G++   K D + AL+            D  + +     +IG  Y  L    EA  A+ +
Sbjct: 12  EGVLAADKKDWKGALDAFSAV------QDPHSRIC---FNIGCMYTILKNMTEAEKAFTR 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE-------KPVPG 510
           ++             +A  + +   +Y +T K   +    + AL           K +  
Sbjct: 63  SI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
                    L +++ +Y    E ++A + L  A  + ++
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 42/162 (25%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
             +      +  A+       +         H+         +G  Y +L  +  +   +
Sbjct: 13  GVLAADKKDWKGALDAFSAVQDP--------HSRI----CFNIGCMYTILKNMTEAEKAF 60

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---AL----QFSEAQKFCQMALDIHKDNG 384
           T  +          D        +LA A+ Q         ++  A K  + AL   + N 
Sbjct: 61  TRSINR--------DK-------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105

Query: 385 SPASLEEAADRRL--------MGLICETKGDHEAALEHLVLA 418
                      +L        +  +   K + + A E L LA
Sbjct: 106 LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 21/151 (13%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLEL----VMCLHVIAAIYCSLGQYNEAIPVLEQSI 292
           N  +   ++     +   GA  K    +    +  ++  A  + + G+  EA        
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352
                    +     +   M L   Y +  Q + +   Y     +               
Sbjct: 64  IY-------DFYNVDY--IMGLAAIYQIKEQFQQAADLYAVAFAL--------GKNDYTP 106

Query: 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
             +  +  ++     +A++  ++ +    D 
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 37/180 (20%)

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDS 577
           +T+  SI  ++ +   +   L+    I +D          ++        +Y  G   ++
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDM---------MDDIYSYAYDFYNKGRIEEA 55

Query: 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637
              F+               +    +  +      +    +A +L+  A ++        
Sbjct: 56  EVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-------- 99

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697
             +      +       +     A E  E V+              D++ +  A+   +A
Sbjct: 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN----------DEKLKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 17/148 (11%), Positives = 35/148 (23%), Gaps = 19/148 (12%)

Query: 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL-----MGLICETKGDHEAALEHLVL 417
           +L  +E +      +D      +   +    D  +            KG  E A      
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477
             +       D         +   Y    ++ +A   Y  A    K +         +  
Sbjct: 62  LCI------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--------YTPV 107

Query: 478 VRLADMYNRTGKLRESKSYCENALRIYE 505
                   R     ++K   E  ++   
Sbjct: 108 FHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 17/126 (13%)

Query: 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
           S    + +  R +EA   ++                     + LA +Y    + +++   
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADL 92

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556
              A  +        P                 +    +A +  +  ++  ND   +   
Sbjct: 93  YAVAFAL--GKNDYTPVFHTGQ-------CQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143

Query: 557 VAGIEA 562
            + ++A
Sbjct: 144 QSYLDA 149

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 48.8 bits (115), Expect = 7e-07
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564
           +QA+K LQ +LK+Y  A      +A I+A M
Sbjct: 19  KQALKKLQASLKLY--ADDSAPALA-IKATM 46

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
           + G+    L N +++  +F+           +K      A   +GL   +      A+  
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
              AR +         P  + V++ LA ++      + A+  L 
Sbjct: 74  LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 17/110 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
                  L    EA    E   +        E   A       LG T A   +   +++ 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQK-----EPEREEA----WRSLGLTQAENEKDGLAIIA 73

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
                 +        DP+       LA +H      + A    +  L   
Sbjct: 74  LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 17/109 (15%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
            G + L L+   EA  A++           +  P     +  L        K   +    
Sbjct: 23  EGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
            +A  +   P       +  +    ++  + + +    A+  L+  L  
Sbjct: 75  NHARML--DP-------KDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           ++   + A  +  +G+       +++A   Y KA+        E  P+  + +   A +Y
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI--------ELDPSNITFYNNKAAVY 52

Query: 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544
               K  E   +CE A+ +          + IA  ++   + ++  N+L  A++   ++L
Sbjct: 53  FEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 545 KIYNDA 550
             + D 
Sbjct: 111 SEFRDP 116

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 17/130 (13%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +A      G Y +A  V +    +         +       + LG     +GQ + +
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRF----FLGLGACRQAMGQYDLA 74

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           +  Y+ G  +        D        + AE  +Q  + +EA+    +A ++  +     
Sbjct: 75  IHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126

Query: 388 SLEEAADRRL 397
            L       L
Sbjct: 127 ELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 22/139 (15%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
                     M  +I     S  +LE+      +       G +E A        +    
Sbjct: 2   PLGSGGGTIAMLNEI-----SSDTLEQLYS---LAFNQYQSGXYEDAHXVFQALCV---L 50

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           +  D+        +G    ++ +YD A  +Y                         A+  
Sbjct: 51  DHYDSRFF---LGLGACRQAMGQYDLAIHSYSYGA--------VMDIXEPRFPFHAAECL 99

Query: 485 NRTGKLRESKSYCENALRI 503
            + G+L E++S    A  +
Sbjct: 100 LQXGELAEAESGLFLAQEL 118

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA 661
               +    ++  + + A+ LFEE             PD +G Y +L   Y+ + R DDA
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDA 60

Query: 662 IEILE 666
           I+   
Sbjct: 61  IDTYA 65

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           +A  +      + A+ + E+ +E  P      ++       +  LG  Y  L + ++++ 
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDP------DYVGT----YYHLGKLYERLDRTDDAID 62

Query: 330 CYTTGLEVQKQ 340
            Y  G+EV ++
Sbjct: 63  TYAQGIEVARE 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 63/387 (16%), Positives = 114/387 (29%), Gaps = 125/387 (32%)

Query: 427 QDAEVASVDCS-IGD---TYLSLSRYDE---AGFAYQKALTAFKT--NKGENHPAVASVF 477
           +DA V + DC  + D   + LS    D    +  A    L  F T  +K E    +   F
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE---MVQKF 82

Query: 478 VR--LADMYN------RT---GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526
           V   L   Y       +T        ++ Y E   R+Y                 +VS +
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKY-------NVSRL 134

Query: 527 YESMNELEQAIKLLQ--------------K---ALKIYNDAP--------------GQQS 555
            +   +L QA+  L+              K   AL +                      +
Sbjct: 135 -QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 556 TVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFF-------------GV 601
           +   +   +  + Y +  N++   D   N   ++ +I                      V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 602 ----ALNQMGLAC----VQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
               A N   L+C      R+  + + +         L+       PD            
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------------ 301

Query: 653 DAIGRLDDAIEILEFVVGIREEKL----GTANPDVDDEKRRL---AELLKEA----GRVR 701
                  +   +L   +  R + L     T NP      RRL   AE +++        +
Sbjct: 302 -------EVKSLLLKYLDCRPQDLPREVLTTNP------RRLSIIAESIRDGLATWDNWK 348

Query: 702 SRKAQSLETLLDANSRVNN-DGIEVRQ 727
                 L T+++++  +N  +  E R+
Sbjct: 349 HVNCDKLTTIIESS--LNVLEPAEYRK 373

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 24/133 (18%)

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
                 LE  +       G ++ L        LG TYA   Q + +L      L+     
Sbjct: 2   QAITERLEAMLAQ-----GTDNMLL----RFTLGKTYAEHEQFDAALPHLRAALDF---- 48

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
               DP      ++L +        + A++  +  L   +  G    ++E      +  +
Sbjct: 49  ----DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE------LQ-V 97

Query: 402 CETKGDHEAALEH 414
              +   E ALEH
Sbjct: 98  FLRRLAREDALEH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 19/125 (15%)

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
              +L A+  + +    +    +G    +    + A+     A            P    
Sbjct: 4   ITERLEAMLAQGTDNM-LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSV 54

Query: 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE--KRRLAELLKEAGRVR 701
            +  L  T    G    A +  E  +               D+   + L   L+   R  
Sbjct: 55  AWKWLGKTLQGQGDRAGARQAWESGLAA--------AQSRGDQQVVKELQVFLRRLARED 106

Query: 702 SRKAQ 706
           + +  
Sbjct: 107 ALEHH 111

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623
           +G  YY  G+Y ++ + ++ A+     +          A   +G A  ++   +EA+E +
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALE----L---DPNNA-EAWYNLGNAYYKQGDYDEAIEYY 66

Query: 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
           ++A  +         P+    + NL   Y   G  D+AIE
Sbjct: 67  QKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIE 98

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 29/134 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y    + ++AI+  QKAL++  N+A          EA   +G  YY  G+Y ++ + ++
Sbjct: 18  AYYKQGDYDEAIEYYQKALELDPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A+     +          A   +G A  ++   +EA+E +++A  +         P+  
Sbjct: 68  KALE----L---DPNNAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNA 111

Query: 643 GVYSNLAGTYDAIG 656
               NL       G
Sbjct: 112 EAKQNLGNAKQKQG 125

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G+       +D A   Y KA         E  P   +     A +Y   G   + +  CE
Sbjct: 11  GNDAYKKKDFDTALKHYDKAK--------ELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            A+ +  +        +IA     + + Y    + + AI    K+L  +  
Sbjct: 63  KAIEVGRENREDYR--QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVALNQMGLACVQRYSI 616
             GV+ Y  GNY++S D F+ AI       +            G AL  +      RY  
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAI-------QLDPEESKYWLMKGKALYNLE-----RY-- 56

Query: 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIE 663
            EAV+ +      +      Y+ D   V++  A     I   +   E
Sbjct: 57  EEAVDCYNYV---INVIEDEYNKD---VWAAKADALRYIEGKEVEAE 97

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 23/109 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFK 582
           +        ++I L +KA+++   ++          +     G   Y L  Y ++ D + 
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEES----------KYWLMKGKALYNLERYEEAVDCYN 64

Query: 583 NAISKLRAIGERKSAFF--GVALNQMGLACVQRYSINEAVELFEEARSI 629
             I+ +      K  +     AL  +              E+ E    +
Sbjct: 65  YVIN-VIEDEYNKDVWAAKADALRYIE-----GK--EVEAEIAEARAKL 105

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 44.9 bits (105), Expect = 7e-05
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           +L  A +   +    ++AL    R  + + I           + +  +  +    G + +
Sbjct: 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRI-FFPGSHPVRGVQVMKVGKLQLHQGMFPQ 389

Query: 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
           A+  L  + +I  +  G+EH+L +        D   +L + + ++
Sbjct: 390 AMKNLRLAFDIMRVTHGREHSLIE--------DLILLLEECDANI 426

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 20/192 (10%), Positives = 53/192 (27%), Gaps = 25/192 (13%)

Query: 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411
            C         A   +  ++  +   +  K      +  +      M     +       
Sbjct: 263 DCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP 322

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
             ++    +   A               D  ++L   +EA F   + +  ++     +HP
Sbjct: 323 DINIYQLKVLDCA--------------MDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
                 +++  +    G   ++      A  I            +  G  + S I + + 
Sbjct: 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM----------RVTHG-REHSLIEDLIL 417

Query: 532 ELEQAIKLLQKA 543
            LE+    ++ +
Sbjct: 418 LLEECDANIRAS 429

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 1/115 (0%)

Query: 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAG-IEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            S     + +KL ++ L+         +     + +    +   L  Y ++    +  + 
Sbjct: 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
               +    +A  G+A+ + GL       I     +  +A +IL    GP HP T
Sbjct: 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 2/106 (1%)

Query: 402 CETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
             ++G +   ++     L     +  D +  V  +     +    L  Y+EA    ++ +
Sbjct: 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
             +      N+  +    +R        G +         A  I  
Sbjct: 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 10/115 (8%), Positives = 36/115 (31%), Gaps = 1/115 (0%)

Query: 528 ESMNELEQAIKLLQKALKIYNDA-PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           +      + +++ + + +  +         +  +  Q   +   + ++  +    +  I 
Sbjct: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
                    S        ++G   +   +     +  ++A +I+E   G  HP  
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 389 LEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
           +  A +        +        LE        M+ +  D +  +  +        L + 
Sbjct: 295 VRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ 354

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
            ++ A    QK +  +  +       VAS++++L  +Y         +   + A+ I E
Sbjct: 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	727
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.98
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.91
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.86
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.81
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.76
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.73
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.73
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.7
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.7
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.69
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.68
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.67
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.66
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.64
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.64
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.64
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.63
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.6
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.54
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.52
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.51
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.51
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.49
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.49
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.48
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.47
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.47
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.44
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.43
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.37
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.37
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.36
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.34
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.32
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.32
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.31
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.3
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.3
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.29
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.28
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.27
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.22
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.22
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.19
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.18
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.18
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.16
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.12
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.11
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.08
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.02
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.97
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.97
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.97
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.87
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.84
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.84
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.84
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.81
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.74
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.73
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.66
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.66
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.6
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.57
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.56
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.49
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.39
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.35
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.27
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.19
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.17
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.13
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.13
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.06
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.0
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.99
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.98
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.81
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.74
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.72
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.49
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.18
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.94
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.53
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.9
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.71
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.57
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.56
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.51
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.51
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.42
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.39
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.39
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.23
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.17
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.87
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.84
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.71
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.62
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.51
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.44
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.4
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.37
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.66
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.62
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.42
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.99
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.61
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.51
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	90.93
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	88.25
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	88.23
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	88.19
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	86.97
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	86.29
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	85.68
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.25
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	84.04
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	83.99
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	83.89
2o8p_A	227	14-3-3 domain containing protein; signaling protei	83.8
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	83.66
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.63
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.59
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	82.85
2o8p_A	227	14-3-3 domain containing protein; signaling protei	82.21
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	81.99
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	80.55
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.3
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	80.23

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.7e-37  Score=327.13  Aligned_cols=386  Identities=19%  Similarity=0.212  Sum_probs=346.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch
Q 004848          225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA  304 (727)
Q Consensus       225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  304 (727)
                      +.+|..++..|+ +++|+..|.++++..         |+...++..+|.++...|++++|+.++++++...     +.. 
T Consensus         3 ~~~a~~~~~~g~-~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~-   66 (388)
T 1w3b_A            3 MELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL-   66 (388)
T ss_dssp             CTHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred             hhHHHHHHHCCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc-
Confidence            356888999997 999999999998762         4456778899999999999999999999999875     333 


Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004848          305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (727)
Q Consensus       305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (727)
                         ..++..+|.+|...|++++|+..|++++.+        +|....++..+|.++...|++++|+..|++++...|...
T Consensus        67 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  135 (388)
T 1w3b_A           67 ---AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY  135 (388)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred             ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence               335999999999999999999999999998        788899999999999999999999999999999876543


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004848          385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT  464 (727)
Q Consensus       385 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  464 (727)
                              .++..+|.++...|++++|+.+|.+++..      .|....++..+|.++...|++++|+.+|++++.+   
T Consensus       136 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  198 (388)
T 1w3b_A          136 --------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---  198 (388)
T ss_dssp             --------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred             --------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence                    56889999999999999999999999864      4566788999999999999999999999999998   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (727)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (727)
                           .|....++..+|.++...|++++|+..|++++.+         .|....++..+|.++...|++++|+..|++++
T Consensus       199 -----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  264 (388)
T 1w3b_A          199 -----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             -----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 7888999999999999999999999999999998         34446789999999999999999999999999


Q ss_pred             HHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004848          545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE  624 (727)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  624 (727)
                      .+.+..       ..++..+|.++...|++++|+.+|++++++.        +....++..+|.++...|++++|+.+|+
T Consensus       265 ~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~  329 (388)
T 1w3b_A          265 ELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYR  329 (388)
T ss_dssp             HTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            875443       4678999999999999999999999999862        2235788999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848          625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (727)
                      +++++        +|+...++..+|.+|...|++++|+.+|++++++        +|....++..+|.++..+|+
T Consensus       330 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          330 KALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence            99987        7888889999999999999999999999999975        68889999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.8e-36  Score=318.31  Aligned_cols=368  Identities=18%  Similarity=0.263  Sum_probs=333.8

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004848          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (727)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (727)
                      .+|..++..|++++|+..|++++...     ++++    .++..+|.++...|++++|+.++++++..        +|..
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~   66 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL   66 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence            36888999999999999999998875     4443    34788999999999999999999999998        7889


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (727)
                      ..++..+|.++...|++++|+.+|++++.+.|..        ..++..+|.++...|++++|+..|++++..      .|
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p  132 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP  132 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence            9999999999999999999999999999987554        356999999999999999999999999864      45


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      ....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+      
T Consensus       133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------  198 (388)
T 1w3b_A          133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------  198 (388)
T ss_dssp             TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            56678899999999999999999999999998        7888999999999999999999999999999998      


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (727)
                         .|....++..+|.++...|++++|+..|++++.+.+..       ..++..+|.+|...|++++|+.+|++++.+  
T Consensus       199 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  266 (388)
T 1w3b_A          199 ---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--  266 (388)
T ss_dssp             ---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence               34457789999999999999999999999999986554       568889999999999999999999999885  


Q ss_pred             HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (727)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (727)
                            .+....++..+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++
T Consensus       267 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  332 (388)
T 1w3b_A          267 ------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             ------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  1223568999999999999999999999999998        78888899999999999999999999999998


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ++        +|+...++..+|.+|...|++++|+ ..|+++++++|+
T Consensus       333 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~  371 (388)
T 1w3b_A          333 EV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPT  371 (388)
T ss_dssp             TS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTT
T ss_pred             hc--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            64        6888899999999999999999999 999999999987

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-35  Score=327.57  Aligned_cols=448  Identities=13%  Similarity=0.099  Sum_probs=363.8

Q ss_pred             cCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (727)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  271 (727)
                      ..+..+...+++..++..+.......|+. ..++.+|..+...|+ +++|+..|++++..          +....++..+
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~----------~~~~~~~~~l  156 (597)
T 2xpi_A           89 LWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY----------NRSSACRYLA  156 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG----------GTCHHHHHHH
T ss_pred             HHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc----------ccchhHHHHH
Confidence            34444555677776765555555555654 567889999999997 99999998887642          2235678899


Q ss_pred             HHHHHHcCChhHHHHHHHHhcccchhc-------cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          272 AAIYCSLGQYNEAIPVLEQSIEIPVIE-------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      +.+|...|++++|+.+|++........       ...........+|+.+|.+|...|++++|+.+|+++++.       
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------  229 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-------  229 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            999999999999999999743321000       000000123567999999999999999999999999987       


Q ss_pred             CCchHHHHHHHH--------------------------------------HHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848          345 TDPRVGETCRYL--------------------------------------AEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (727)
Q Consensus       345 ~~~~~~~~~~~l--------------------------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (727)
                       +|....++..+                                      +..|...|++++|+.+|++++.. +..   
T Consensus       230 -~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~---  304 (597)
T 2xpi_A          230 -DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS---  304 (597)
T ss_dssp             -CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC---
T ss_pred             -CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch---
Confidence             45555554444                                      34455678999999999988876 211   


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004848          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (727)
Q Consensus       387 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (727)
                           ..++..++.+|...|++++|+.+|++++..      .+....++..++.++...|++++|+..+++++..     
T Consensus       305 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----  368 (597)
T 2xpi_A          305 -----SDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----  368 (597)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             -----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----
Confidence                 367999999999999999999999998753      2333456788999999999999999999999976     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004848          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (727)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (727)
                         .|....++..+|.+|...|++++|+.+|++++++         .+....++..++.+|...|++++|+.+|++++..
T Consensus       369 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  436 (597)
T 2xpi_A          369 ---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL  436 (597)
T ss_dssp             ---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               6778899999999999999999999999999987         3334678999999999999999999999999987


Q ss_pred             HHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       547 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                      .+..       ..++..+|.+|...|++++|+.+|++++...    +    ....++..+|.++...|++++|+.+|+++
T Consensus       437 ~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  501 (597)
T 2xpi_A          437 FQGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYALF----Q----YDPLLLNELGVVAFNKSDMQTAINHFQNA  501 (597)
T ss_dssp             TTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----C----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Cccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----CChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5543       3678899999999999999999999998762    1    13468999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHH
Q 004848          627 RSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA  705 (727)
Q Consensus       627 l~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~  705 (727)
                      ++.......  +|+. ..++..+|.+|...|++++|+.+|++++++        .|....++..|+.+|...|++++|. 
T Consensus       502 ~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-  570 (597)
T 2xpi_A          502 LLLVKKTQS--NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAI-  570 (597)
T ss_dssp             HHHHHHSCC--CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHH-
T ss_pred             HHhhhcccc--chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHH-
Confidence            998655322  4553 779999999999999999999999999987        4777889999999999999999999 


Q ss_pred             HHHHHHHHHhhh
Q 004848          706 QSLETLLDANSR  717 (727)
Q Consensus       706 ~~l~~al~~~p~  717 (727)
                      ..|+++++++|+
T Consensus       571 ~~~~~~l~~~p~  582 (597)
T 2xpi_A          571 THLHESLAISPN  582 (597)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCC
Confidence            999999999997

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9e-33  Score=310.06  Aligned_cols=428  Identities=12%  Similarity=0.029  Sum_probs=348.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      .....|..++..+...|+ +++|+.+|++++...       |++   ..+..+|.+|...|++++|+..|++++...   
T Consensus        82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~-------p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  147 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDIT-------GNP---NDAFWLAQVYCCTGDYARAKCLLTKEDLYN---  147 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-------CCH---HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---
T ss_pred             HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhC-------CCc---hHHHHHHHHHHHcCcHHHHHHHHHHHhccc---
Confidence            467788999999999997 999999999998653       222   456789999999999999999999997652   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ--------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQ  370 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  370 (727)
                         .+    ..++..++.+|...|++++|+..|++.....        ........+....+++.+|.+|...|++++|+
T Consensus       148 ---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  220 (597)
T 2xpi_A          148 ---RS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK  220 (597)
T ss_dssp             ---TC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---cc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence               22    2358899999999999999999998632110        00000011446889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC------------------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          371 KFCQMALDIHKDNGSPA------------------------------SLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (727)
Q Consensus       371 ~~~~~al~~~~~~~~~~------------------------------~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~  420 (727)
                      .+|++++...+......                              .......+..++..|...|++++|+.+|++++.
T Consensus       221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  300 (597)
T 2xpi_A          221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING  300 (597)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence            99999998765432100                              000000112224455567888999998887753


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (727)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (727)
                      .       +....++..++.+|...|++++|+.+|++++..        .|....++..++.++...|++++|+..++++
T Consensus       301 ~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
T 2xpi_A          301 L-------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDL  365 (597)
T ss_dssp             G-------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             C-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            2       455678899999999999999999999999987        5667788999999999999999999999999


Q ss_pred             HHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004848          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (727)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (727)
                      +..         .+....++..+|.+|...|++++|+.+|++++++.+..       ..++..++.+|...|++++|+.+
T Consensus       366 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~  429 (597)
T 2xpi_A          366 VDR---------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-------GPAWIGFAHSFAIEGEHDQAISA  429 (597)
T ss_dssp             HHH---------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             Hhh---------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence            977         23346788999999999999999999999999875443       46889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (727)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (727)
                      |++++....        ....++..+|.+|...|++++|+.+|+++++.        .|....++..+|.+|...|++++
T Consensus       430 ~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~  493 (597)
T 2xpi_A          430 YTTAARLFQ--------GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQT  493 (597)
T ss_dssp             HHHHHHTTT--------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCc--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence            999987521        13468889999999999999999999999998        77778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          661 AIEILEFVVGIREEKLGTANPDV-DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       661 A~~~~~~al~~~~~~~g~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      |+.+|++++++....  +.+|.. ..++..++.+|...|++++|. ..|+++++++|.
T Consensus       494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~  548 (597)
T 2xpi_A          494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAI-DALNQGLLLSTN  548 (597)
T ss_dssp             HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSSC
T ss_pred             HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCC
Confidence            999999999876542  234554 789999999999999999999 999999999885

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.8e-32  Score=301.79  Aligned_cols=421  Identities=14%  Similarity=0.146  Sum_probs=327.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      ..+..++.+|..++..|+ +++|+.+|++++...         |....++..+|.+|..+|++++|+..|++++.+.   
T Consensus        23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   89 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---   89 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            467899999999999997 999999999999873         4457889999999999999999999999999875   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (727)
                        +.++    .++..+|.++...|++++|+..|+ ++...        |.....+   ...+...+...+|+..+++++.
T Consensus        90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--------~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~  151 (537)
T 3fp2_A           90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLN--------GDFDGAS---IEPMLERNLNKQAMKVLNENLS  151 (537)
T ss_dssp             --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred             --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--------CCCChHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence              3333    358999999999999999999995 66652        3332222   2234445556778888888876


Q ss_pred             HHHhcCCCCCHH--H---------------------------HHHHHHH--------HHHHHHcCCHHHHHHHHHHHHHH
Q 004848          379 IHKDNGSPASLE--E---------------------------AADRRLM--------GLICETKGDHEAALEHLVLASMT  421 (727)
Q Consensus       379 ~~~~~~~~~~~~--~---------------------------a~~~~~l--------~~~~~~~g~~~~A~~~~~~al~~  421 (727)
                      ..+.......+.  .                           ......+        +......|++++|+..|++++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~  231 (537)
T 3fp2_A          152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA  231 (537)
T ss_dssp             -------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            543322211100  0                           0012222        22233345778888888777643


Q ss_pred             HHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004848          422 MIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (727)
Q Consensus       422 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (727)
                      .   +..+    ..+.++..+|.++...|++++|+.+|++++..        .|. ..++..+|.++...|++++|+.+|
T Consensus       232 ~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~  299 (537)
T 3fp2_A          232 N---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFF  299 (537)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred             C---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence            2   2222    24667899999999999999999999999998        666 789999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 004848          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (727)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (727)
                      ++++...         +....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|++++|
T Consensus       300 ~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          300 QKAVDLN---------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence            9999983         3346789999999999999999999999999986654       26788999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc--
Q 004848          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI--  655 (727)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--  655 (727)
                      +.+|++++...        +....++..+|.++...|++++|+.+|++++........  .......+..+|.++...  
T Consensus       364 ~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~  433 (537)
T 3fp2_A          364 EAFFNETKLKF--------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSS  433 (537)
T ss_dssp             HHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhh
Confidence            99999999862        223468889999999999999999999999998654322  222334577889999999  


Q ss_pred             --------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          656 --------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       656 --------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                              |++++|+.+|++++.+        +|....++..+|.+|...|++++|+ ..|+++++++|.
T Consensus       434 ~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~  494 (537)
T 3fp2_A          434 QDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILART  494 (537)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--
T ss_pred             ccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence                    9999999999999987        5777889999999999999999999 999999999886

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=293.62  Aligned_cols=403  Identities=12%  Similarity=0.085  Sum_probs=337.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (727)
                      +.+..++.+|..++..|+ |++|+.+|++++...       |+   ..++..+|.++...|++++|+..|++++.+.   
T Consensus         4 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-------p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   69 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKK-YDDAIKYYNWALELK-------ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK---   69 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             hhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcC-------cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---
Confidence            357789999999999997 999999999999873       33   6679999999999999999999999999875   


Q ss_pred             cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----------------------h-------------
Q 004848          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-----------------------L-------------  342 (727)
Q Consensus       299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~-------------  342 (727)
                        +...    .++..+|.+|..+|++++|+..|++++...+..                       +             
T Consensus        70 --p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  143 (514)
T 2gw1_A           70 --PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL  143 (514)
T ss_dssp             --SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------
T ss_pred             --hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence              4433    358999999999999999999999987653100                       0             


Q ss_pred             -----------------------------------CCCCchHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcC
Q 004848          343 -----------------------------------GETDPRVGETCRYLAEAHVQ---ALQFSEAQKFCQMALDIHKDNG  384 (727)
Q Consensus       343 -----------------------------------~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~  384 (727)
                                                         .-..|....++..+|.+++.   .|++++|+.+|++++...+...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  223 (514)
T 2gw1_A          144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL  223 (514)
T ss_dssp             -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence                                               00013347778888888886   8999999999999999543222


Q ss_pred             --CCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          385 --SPAS----LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       385 --~~~~----~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                        .+..    +....++..+|.++...|++++|+.+|++++..      .+. ..++..+|.++...|++++|+.+++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              1111    445678999999999999999999999999864      233 788999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004848          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (727)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (727)
                      +..        .|....++..+|.++...|++++|+.+|++++.+.         +....++..+|.++...|++++|+.
T Consensus       297 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~  359 (514)
T 2gw1_A          297 LKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD---------PENIFPYIQLACLAYRENKFDDCET  359 (514)
T ss_dssp             HTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC---------SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred             hhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            987        67777899999999999999999999999999873         2234578999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH---hCC
Q 004848          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ---RYS  615 (727)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~  615 (727)
                      ++++++...+..       ..++..+|.++...|++++|+.+|++++..........  ....++..+|.++..   .|+
T Consensus       360 ~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~  430 (514)
T 2gw1_A          360 LFSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVEN  430 (514)
T ss_dssp             HHHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTH
T ss_pred             HHHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCC
Confidence            999999886554       36788999999999999999999999998765432211  113488999999999   999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004848          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL  690 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L  690 (727)
                      +++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+        +|....++..+
T Consensus       431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~  489 (514)
T 2gw1_A          431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHH
Confidence            99999999999998        7888889999999999999999999999999987        56666666554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=301.45  Aligned_cols=393  Identities=16%  Similarity=0.122  Sum_probs=332.7

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 004848          263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL  342 (727)
Q Consensus       263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  342 (727)
                      ..+.++..+|.+++..|+|++|+..|++++...     ++     ..++..+|.++...|++++|+..|+++++.     
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----   68 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-----   68 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence            346789999999999999999999999999875     22     235899999999999999999999999998     


Q ss_pred             CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC-----------------------------------
Q 004848          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-----------------------------------  387 (727)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------------------------  387 (727)
                         +|....++..+|.++...|++++|+..|++++...+......                                   
T Consensus        69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  145 (514)
T 2gw1_A           69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST  145 (514)
T ss_dssp             ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred             ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence               788899999999999999999999999999987654110000                                   


Q ss_pred             ------------------------------------CHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHH----h
Q 004848          388 ------------------------------------SLEEAADRRLMGLICET---KGDHEAALEHLVLASMTMI----A  424 (727)
Q Consensus       388 ------------------------------------~~~~a~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~----~  424 (727)
                                                          .+.....+..+|.++..   .|++++|+.+|++++....    .
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  225 (514)
T 2gw1_A          146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK  225 (514)
T ss_dssp             -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence                                                01114567778887776   8999999999999987431    1


Q ss_pred             CCC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          425 NDQ----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (727)
Q Consensus       425 ~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (727)
                      .+.    .+....++..+|.++...|++++|+.+|++++..        .|. ..++..+|.++...|++++|+.+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            112    2677889999999999999999999999999998        566 899999999999999999999999999


Q ss_pred             HHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004848          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (727)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (727)
                      +...         +....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|++++|+.+
T Consensus       297 ~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~  360 (514)
T 2gw1_A          297 LKLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETL  360 (514)
T ss_dssp             HTTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             hhcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence            8872         2335678999999999999999999999999875543       35788999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---cCC
Q 004848          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---IGR  657 (727)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~  657 (727)
                      |++++...+        ....++..+|.++...|++++|+.+|++++........  ......++..+|.++..   .|+
T Consensus       361 ~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~  430 (514)
T 2gw1_A          361 FSEAKRKFP--------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--IYVGIAPLVGKATLLTRNPTVEN  430 (514)
T ss_dssp             HHHHHHHST--------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS--CSSCSHHHHHHHHHHHTSCCTTH
T ss_pred             HHHHHHHcc--------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHhhhhhcCC
Confidence            999987621        12468899999999999999999999999988332111  11113489999999999   999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +++|+.+|++++.+        +|....++..+|.+|...|++++|. ..|+++++++|+
T Consensus       431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~  481 (514)
T 2gw1_A          431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLART  481 (514)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhccc
Confidence            99999999999987        5777889999999999999999999 999999999986

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.8e-31  Score=286.94  Aligned_cols=407  Identities=14%  Similarity=0.074  Sum_probs=295.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHH
Q 004848          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (727)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (727)
                      .+.++..+++.+.....   ..++...+.++..||.++..+|++++|+++|++|+++.+...+.......+.+|.++|.+
T Consensus        27 ~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~  103 (472)
T 4g1t_A           27 GENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV  103 (472)
T ss_dssp             TCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence            45566666666554322   223344577899999999999999999999999999865443333222345568999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004848          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADR  395 (727)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  395 (727)
                      |..+|++++|+.+|++++++.+...+..++..+.++..+|.++...|  +|++|+.+|++++.+.|...        .++
T Consensus       104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~--------~~~  175 (472)
T 4g1t_A          104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP--------EFT  175 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--------HHH
T ss_pred             HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--------HHH
Confidence            99999999999999999999988777767778888999888877654  79999999999999987542        446


Q ss_pred             HHHHHHH---HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          396 RLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGE  468 (727)
Q Consensus       396 ~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~  468 (727)
                      ..++.++   ...+++++|++.|++++.+      .|....++..+|..+.    ..|++++|+.++++++..       
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-------  242 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-------  242 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------
Confidence            6666664   4567889999999999864      3444455666665554    456888999999999988       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc------------------
Q 004848          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM------------------  530 (727)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------  530 (727)
                       .|....++..+|.+|...|++++|+..|+++++.         .|....++..+|.+|...                  
T Consensus       243 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~  312 (472)
T 4g1t_A          243 -APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL  312 (472)
T ss_dssp             -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred             -CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             7888899999999999999999999999999998         445577888899887653                  


Q ss_pred             -ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 004848          531 -NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (727)
Q Consensus       531 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  609 (727)
                       +.+++|+.++++++.+.+..       ..++..+|.+|...|++++|+.+|++++.+     ...+.....++..+|.+
T Consensus       313 ~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~  380 (472)
T 4g1t_A          313 LELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNF  380 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHH
Confidence             34667778888887775544       245778999999999999999999999875     12222333456667754


Q ss_pred             -HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004848          610 -CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR  688 (727)
Q Consensus       610 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~  688 (727)
                       +...|++++|+.+|++++++        .|.......          ....+..++++++..        +|..+.++.
T Consensus       381 ~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~----------~~~~l~~~~~~~l~~--------~p~~~~~~~  434 (472)
T 4g1t_A          381 QLYQMKCEDKAIHHFIEGVKI--------NQKSREKEK----------MKDKLQKIAKMRLSK--------NGADSEALH  434 (472)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHH----------HHHHHHHHHHHHHHH--------CC-CTTHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhc--------CcccHHHHH----------HHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence             45789999999999999998        565433221          223345566666654        688888999


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          689 RLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .||.+|...|++++|+ ++|++||++.|.
T Consensus       435 ~LG~~~~~~g~~~~A~-~~y~kALe~~~~  462 (472)
T 4g1t_A          435 VLAFLQELNEKMQQAD-EDSERGLESGSL  462 (472)
T ss_dssp             HHHHHHHHHHHCC----------------
T ss_pred             HHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence            9999999999999999 999999999887

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.98  E-value=8.9e-30  Score=275.03  Aligned_cols=400  Identities=14%  Similarity=0.115  Sum_probs=297.1

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004848          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL  288 (727)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  288 (727)
                      .+.+....+|..+..++.+|..++..|+ +++|+.+|++++...         |....++..+|.+|...|++++|+.+|
T Consensus        14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~   83 (450)
T 2y4t_A           14 GTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDL   83 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5566677889999999999999999997 999999999998762         334778899999999999999999999


Q ss_pred             HHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH---HHHHHHHHHHHHhcC
Q 004848          289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG---ETCRYLAEAHVQALQ  365 (727)
Q Consensus       289 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~  365 (727)
                      ++++...     +..    ..++..+|.+|...|++++|+.+|++++..        .|...   .++..++.++.    
T Consensus        84 ~~al~~~-----p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~----  142 (450)
T 2y4t_A           84 TKVIQLK-----MDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDE----  142 (450)
T ss_dssp             HHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHH----
T ss_pred             HHHHhcC-----CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHH----
Confidence            9999875     333    235888999999999999999999999887        56665   66666554421    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004848          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (727)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (727)
                                                ...+..+|.++...|++++|+.+|++++..      .|....++..+|.+|...
T Consensus       143 --------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~  190 (450)
T 2y4t_A          143 --------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKE  190 (450)
T ss_dssp             --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred             --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHC
Confidence                                      122455677777778888888888777653      334456777788888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHH------
Q 004848          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG------  519 (727)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------  519 (727)
                      |++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+..      +.......      
T Consensus       191 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          191 GEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKK  256 (450)
T ss_dssp             TCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHH
Confidence            8888888888888776        466677788888888888888888888888887621      12222111      


Q ss_pred             ---HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          520 ---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (727)
Q Consensus       520 ---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (727)
                         +..+|.++...|++++|+.+|++++.+.+.   .......++..+|.++...|++++|+.++++++.+.        
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------  325 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------  325 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence               244599999999999999999999987543   222335678899999999999999999999999861        


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH------------HHHcC-----ChH
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT------------YDAIG-----RLD  659 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g-----~~~  659 (727)
                      +....++..+|.++...|++++|+.+|++++++        .|+...++..++.+            |...|     +.+
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~  397 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ  397 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence            224578999999999999999999999999998        78888888999854            44455     567


Q ss_pred             HHHHHHHH-HHHHHHHhcCCCC--hhHHHHHHHHHHHHHHhCChhHHH
Q 004848          660 DAIEILEF-VVGIREEKLGTAN--PDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       660 ~A~~~~~~-al~~~~~~~g~~~--p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                      ++...|++ ++...........  ......+..++.+|..+|+.+++.
T Consensus       398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            77888886 5543111110000  113456778888899888887764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.98  E-value=7.5e-31  Score=285.41  Aligned_cols=397  Identities=14%  Similarity=0.049  Sum_probs=287.6

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 004848          216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (727)
Q Consensus       216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  295 (727)
                      .++..+..+..+|.++...|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.+|++++.+.
T Consensus        46 ~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           46 NREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             C---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            344556788899999999997 9999999999999998876655567788899999999999999999999999999987


Q ss_pred             hhccCccchHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---hcCHHHHH
Q 004848          296 VIEEGQEHALAKFAGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---ALQFSEAQ  370 (727)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~  370 (727)
                      +...++.++. ...++..+|.++...  ++|++|+.+|++++++        +|....++..++.++..   .+++++|+
T Consensus       125 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~al  195 (472)
T 4g1t_A          125 EKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNAI  195 (472)
T ss_dssp             HHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred             Hhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHHH
Confidence            6554443321 234577788777765  4799999999999999        78888888888887654   56778999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004848          371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS  446 (727)
Q Consensus       371 ~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  446 (727)
                      ..|++++.+.|...        .++..+|..+.    ..|++++|+.++++++..      .|....++..+|.+|...|
T Consensus       196 ~~~~~al~l~p~~~--------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~  261 (472)
T 4g1t_A          196 DPLRQAIRLNPDNQ--------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKD  261 (472)
T ss_dssp             HHHHHHHHHCSSCH--------HHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCcch--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcC
Confidence            99999999875542        44666665554    456788999999988753      4556678899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHHHhcC
Q 004848          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-------------------GKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~  507 (727)
                      ++++|+..|+++++.        +|....++..+|.+|...                   +.+++|+..+++++.+    
T Consensus       262 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----  329 (472)
T 4g1t_A          262 EPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA----  329 (472)
T ss_dssp             CHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             chHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc----
Confidence            999999999999998        888899999999988653                   3356777888888777    


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004848          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~  586 (727)
                           .+....++..+|.+|...|++++|+.+|++++.+.+.    +.....++..+|.+ +...|++++|+.+|++++.
T Consensus       330 -----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          330 -----NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             -----CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             -----CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                 3334567889999999999999999999999976321    11223445666654 4578999999999999998


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                      +.+.     ..   .          ..+....+..++++++..        +|..+.++..||.+|..+|++++|+++|+
T Consensus       401 i~~~-----~~---~----------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~  454 (472)
T 4g1t_A          401 INQK-----SR---E----------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADEDSE  454 (472)
T ss_dssp             SCCC-----CH---H----------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred             cCcc-----cH---H----------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6211     11   1          111234455667777777        88888899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHH
Q 004848          667 FVVGIREEKLGTANPDVDDEKRRLA  691 (727)
Q Consensus       667 ~al~~~~~~~g~~~p~~~~~~~~La  691 (727)
                      +|+++        .|..+.+...+|
T Consensus       455 kALe~--------~~~~p~a~~~~G  471 (472)
T 4g1t_A          455 RGLES--------GSLIPSASSWNG  471 (472)
T ss_dssp             -------------------------
T ss_pred             HHHhc--------CCCCCcHhhcCC
Confidence            99987        344555555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=3.6e-29  Score=270.24  Aligned_cols=351  Identities=15%  Similarity=0.141  Sum_probs=294.1

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (727)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (727)
                      ....++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+|++++...+..   
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---   93 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---   93 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Confidence            3456999999999999999999999999988        68889999999999999999999999999999987554   


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH---HH------------HHHHHHHHHHcCCHHHH
Q 004848          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA---SV------------DCSIGDTYLSLSRYDEA  451 (727)
Q Consensus       387 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A  451 (727)
                           ..++..+|.+|...|++++|+.+|++++..      .|...   .+            +..+|.++...|++++|
T Consensus        94 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A           94 -----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                 367999999999999999999999988742      22222   33            34557889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcc
Q 004848          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (727)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (727)
                      +.+|++++..        .|....++..+|.+|...|++++|+.+|++++...         +....++..+|.+|...|
T Consensus       163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------NDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------CSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcC
Confidence            9999999987        68888999999999999999999999999999984         334678999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004848          532 ELEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (727)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (727)
                      ++++|+.+|++++.+.+........     ....+..+|.++...|++++|+.+|++++.+.    +..+.....++..+
T Consensus       226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l  301 (450)
T 2y4t_A          226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERI  301 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHH
Confidence            9999999999999875543100000     00112344999999999999999999999852    22333345689999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE  686 (727)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~  686 (727)
                      |.++...|++++|+.++++++.+        +|....++..+|.+|...|++++|+.+|++++++        +|+...+
T Consensus       302 ~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~  365 (450)
T 2y4t_A          302 CHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQI  365 (450)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHH
Confidence            99999999999999999999998        7888899999999999999999999999999975        5777788


Q ss_pred             HHHHHHH------------HHHhC-----ChhHHHHHHHHH-HHHHhhh
Q 004848          687 KRRLAEL------------LKEAG-----RVRSRKAQSLET-LLDANSR  717 (727)
Q Consensus       687 ~~~La~~------------~~~~g-----~~~~A~~~~l~~-al~~~p~  717 (727)
                      +..|+.+            |...|     +.+++. +.|++ ++...|+
T Consensus       366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd  413 (450)
T 2y4t_A          366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPD  413 (450)
T ss_dssp             HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCC
Confidence            8888854            44455     556778 78876 8888887

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=9.9e-30  Score=281.33  Aligned_cols=419  Identities=13%  Similarity=0.060  Sum_probs=327.8

Q ss_pred             ccccCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004848          189 KSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL  268 (727)
Q Consensus       189 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~  268 (727)
                      .+...+......|++..|+..+..+...+|+...+++.+|.+++..|+ +++|+..|++++.+.         |....++
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~   96 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK---------PDHSKAL   96 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CchHHHH
Confidence            344566677888899999988888888899999999999999999997 999999999999873         4457789


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC---
Q 004848          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET---  345 (727)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---  345 (727)
                      ..+|.++...|++++|+..|+ ++...     ++....       ....+...+...+|+..+++++..........   
T Consensus        97 ~~la~~~~~~g~~~~A~~~~~-~~~~~-----~~~~~~-------~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~  163 (537)
T 3fp2_A           97 LRRASANESLGNFTDAMFDLS-VLSLN-----GDFDGA-------SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS  163 (537)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-HHC-----------------------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHH-HHhcC-----CCCChH-------HHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence            999999999999999999996 66654     222111       12233444555778888877765422111111   


Q ss_pred             --------------------------CchHHHHHHHHH--------HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 004848          346 --------------------------DPRVGETCRYLA--------EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (727)
Q Consensus       346 --------------------------~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (727)
                                                ++........++        ......|++++|+.+|++++...|.... .....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~~  242 (537)
T 3fp2_A          164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LRENA  242 (537)
T ss_dssp             HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHH
T ss_pred             HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHHH
Confidence                                      111111222232        2333446888888888888877654321 11223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       392 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      +.++..+|.++...|++++|+.+|.+++..      .|. ..++..+|.++...|++++|+.+|++++..        .|
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~  307 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NP  307 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CC
Confidence            567899999999999999999999999864      333 678899999999999999999999999998        68


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      ....++..+|.++...|++++|+.+|++++.+.         +....++..+|.++...|++++|+.+|++++...+.. 
T Consensus       308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-  377 (537)
T 3fp2_A          308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-  377 (537)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence            888999999999999999999999999999983         2334678999999999999999999999999986554 


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh----------CCHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAVE  621 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~  621 (727)
                            ..++..+|.++...|++++|+.+|++++.+.+.......  ....+..+|.++...          |++++|+.
T Consensus       378 ------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~  449 (537)
T 3fp2_A          378 ------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIK  449 (537)
T ss_dssp             ------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence                  367889999999999999999999999998766543322  234467788999999          99999999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      +|++++..        +|....++..+|.+|...|++++|+.+|++++++.
T Consensus       450 ~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          450 LLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            99999999        88888999999999999999999999999999873

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=2.3e-28  Score=254.98  Aligned_cols=333  Identities=15%  Similarity=0.150  Sum_probs=283.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004848          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (727)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (727)
                      +..++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.++++++...|..    
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----   70 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----   70 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence            346899999999999999999999999998        78888999999999999999999999999999986543    


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHcCCHHHHH
Q 004848          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSI------------GDTYLSLSRYDEAG  452 (727)
Q Consensus       388 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~  452 (727)
                          ..++..+|.++...|++++|+.+|++++.      ..|   ....++..+            |.++...|++++|+
T Consensus        71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ----chHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence                26799999999999999999999999874      244   455555555            79999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc
Q 004848          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (727)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (727)
                      .++++++..        .|....++..+|.++...|++++|+.++++++..         .|....++..+|.++...|+
T Consensus       141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL---------KSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC
Confidence            999999998        6778899999999999999999999999999987         23346789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004848          533 LEQAIKLLQKALKIYNDAPGQQSTV-----AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (727)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  607 (727)
                      +++|+.+|++++...+.........     ......+|.++...|++++|+.+|++++...    +..+.....++..+|
T Consensus       204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence            9999999999998765431100000     1113356899999999999999999998863    223334456788899


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848          608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK  687 (727)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~  687 (727)
                      .++...|++++|+.+|+++++.        +|....++..+|.+|...|++++|+.+|++++++        +|+...++
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~  343 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIR  343 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHH
Confidence            9999999999999999999998        7888889999999999999999999999999976        67777888


Q ss_pred             HHHHHHHHHhCC
Q 004848          688 RRLAELLKEAGR  699 (727)
Q Consensus       688 ~~La~~~~~~g~  699 (727)
                      ..|+.++...++
T Consensus       344 ~~l~~~~~~~~~  355 (359)
T 3ieg_A          344 EGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888776543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.9e-28  Score=259.05  Aligned_cols=344  Identities=15%  Similarity=0.148  Sum_probs=297.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (727)
Q Consensus       308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (727)
                      +..+..+|.++...|++++|+.+|+++++..     +.++ ..+.++..+|.++...|++++|+.++++++.+.....  
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--   81 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--   81 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence            3458899999999999999999999999982     2122 2467899999999999999999999999999987765  


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------------------
Q 004848          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------------------  447 (727)
Q Consensus       387 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  447 (727)
                      .....+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+                   
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~  161 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD  161 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence            3456678899999999999999999999999999988888888889999999999999999                   


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHH
Q 004848          448 -YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (727)
Q Consensus       448 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (727)
                       +++|+.++++++.+.....  +.+....++..+|.+|...|++++|+.++++++.+....   .+......++..+|.+
T Consensus       162 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~  236 (406)
T 3sf4_A          162 ALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNA  236 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHH
Confidence             9999999999999988764  467788899999999999999999999999999998773   3456677899999999


Q ss_pred             HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004848          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (727)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (727)
                      |...|++++|+.++++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+.  ......++..+
T Consensus       237 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l  313 (406)
T 3sf4_A          237 YIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSL  313 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence            999999999999999999999876 555566788999999999999999999999999999887654  34567899999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                      |.++...|++++|+.+|++++++......  .+....++..+|.++...|+...+...+...
T Consensus       314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  373 (406)
T 3sf4_A          314 GNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIMSE  373 (406)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            99999999999999999999999887644  5677889999999999999875544444333

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=8.2e-28  Score=255.56  Aligned_cols=352  Identities=15%  Similarity=0.154  Sum_probs=301.1

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      ...+.++..+|.++...|++++|+.+|++++.+.+.    .....+.++..+|.++...|++++|+.+|++++.+....+
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   81 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG   81 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence            445678899999999999999999999999998432    2233467899999999999999999999999999998888


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-----------------  489 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  489 (727)
                      +.+..+.++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.+|...|+                 
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            8899999999999999999999999999999999987764  345667899999999999999                 


Q ss_pred             ---hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 004848          490 ---LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (727)
Q Consensus       490 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (727)
                         +++|+.++++++.+....   .+.+....++..+|.++...|++++|+.++++++.+.+.. +.....+.++..+|.
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~  235 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGN  235 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence               999999999999998774   3567788899999999999999999999999999999886 555566778999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004848          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (727)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (727)
                      +|...|++++|+.+|++++.+......  ......++..+|.++...|++++|+.+|++++.+......  .+....++.
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~  311 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACW  311 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhCcC--chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHH
Confidence            999999999999999999999887543  3455789999999999999999999999999999777543  456677999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                      .+|.+|...|++++|+.+|++++++....  ...+....++..++.++...|+...+.....+....+
T Consensus       312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  377 (406)
T 3sf4_A          312 SLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI  377 (406)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-----------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999998765  3457778899999999999998855441444443333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=1.4e-27  Score=249.04  Aligned_cols=336  Identities=11%  Similarity=0.056  Sum_probs=278.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      +..+..+|.+++..|++++|+..|++++...     +..+    .++..+|.++...|++++|+..|+++++.       
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL-------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            5568899999999999999999999999875     3333    35899999999999999999999999998       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hcCCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK---DNGSPA----SLEEAADRRLMGLICETKGDHEAALEHLVL  417 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~  417 (727)
                       .|....++..+|.++...|++++|+.+|++++...+   ......    .......+..+|.++...|++++|+.+|.+
T Consensus        67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  145 (359)
T 3ieg_A           67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK  145 (359)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence             688889999999999999999999999999998765   332100    000011123348999999999999999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004848          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (727)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (727)
                      ++..      .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|
T Consensus       146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9764      3445678999999999999999999999999987        6778899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHhHHHH---------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH
Q 004848          498 ENALRIYEKPVPGVPPEEIASG---------LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY  568 (727)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  568 (727)
                      ++++.....      .+.....         ...+|.++...|++++|+.++++++...+..   ......++..+|.++
T Consensus       212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~  282 (359)
T 3ieg_A          212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF  282 (359)
T ss_dssp             HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence            999998322      2222222         3355899999999999999999999876432   223445678899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004848          569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (727)
Q Consensus       569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  648 (727)
                      ...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++++        +|+...++..+
T Consensus       283 ~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l  346 (359)
T 3ieg_A          283 SKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL  346 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence            99999999999999999861        223578999999999999999999999999998        78888888888


Q ss_pred             HHHHHHcC
Q 004848          649 AGTYDAIG  656 (727)
Q Consensus       649 a~~~~~~g  656 (727)
                      +.++..++
T Consensus       347 ~~~~~~~~  354 (359)
T 3ieg_A          347 EKAQRLLK  354 (359)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=2.3e-26  Score=250.80  Aligned_cols=375  Identities=14%  Similarity=0.147  Sum_probs=316.2

Q ss_pred             CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCChhHHHHHHH
Q 004848          218 PGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLE  289 (727)
Q Consensus       218 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~  289 (727)
                      +..+.+++.+|..++.    .++ +++|+.+|++|++.        .   .+.+++.||.+|..    .+++++|+.+|+
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            4567899999999998    776 99999999999863        1   25678999999999    999999999999


Q ss_pred             HhcccchhccCccchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---
Q 004848          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---  362 (727)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  362 (727)
                      ++.+..       +    ..+++.||.+|..    .+++++|+.+|+++.+.          ....+++.||.+|..   
T Consensus       104 ~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g  162 (490)
T 2xm6_A          104 KAALKG-------L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG  162 (490)
T ss_dssp             HHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence            998652       2    2348889999999    89999999999999765          346889999999998   


Q ss_pred             -hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848          363 -ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (727)
Q Consensus       363 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (727)
                       .+++++|+.+|+++++..    .      ..++..+|.+|..    .+++++|+.+|+++...        ....+++.
T Consensus       163 ~~~d~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~  224 (490)
T 2xm6_A          163 VTRDYVMAREWYSKAAEQG----N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH  224 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence             889999999999998752    1      3679999999998    89999999999998752        22467889


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhcCCC
Q 004848          438 IGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       438 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      +|.+|..    .+++++|+.+|+++++.          ....+++.+|.+|..    .+++++|+.+|+++.+.      
T Consensus       225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------  288 (490)
T 2xm6_A          225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------  288 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence            9999997    89999999999998864          235688999999999    99999999999999754      


Q ss_pred             CCChHhHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESM-----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSF  581 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  581 (727)
                      +     ...++..+|.+|...     +++++|+.+|+++++.     +.    ..+++.+|.+|...|   ++++|+.+|
T Consensus       289 ~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~  354 (490)
T 2xm6_A          289 G-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF  354 (490)
T ss_dssp             T-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             C-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence            1     245788999999998     9999999999999874     11    367889999999877   899999999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---
Q 004848          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---  654 (727)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  654 (727)
                      +++++.       .   ...+++.+|.+|..    .+++++|+.+|+++++.          ....++++||.+|..   
T Consensus       355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence            999874       1   25789999999999    89999999999999874          235689999999999   


Q ss_pred             -cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          655 -IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       655 -~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                       .+++++|+.+|+++++..     +..|....+...|+.++....
T Consensus       415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~~  454 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQL  454 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhHH
Confidence             899999999999999873     222668888899998877543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=2e-26  Score=245.50  Aligned_cols=315  Identities=17%  Similarity=0.183  Sum_probs=278.5

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (727)
                      +..+..+..+|..++..|++++|+.+|++++.+.     +.++.....++..+|.+|...|++++|+.+|++++.+....
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            4557778889999999999999999999999874     55555556679999999999999999999999999997664


Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------
Q 004848          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------  407 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~--------------  407 (727)
                        .+.+....++..+|.+|...|++++|+.+|++++.+.+...  .....+.++..+|.+|...|+              
T Consensus       120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence              33477889999999999999999999999999999987765  335567889999999999999              


Q ss_pred             ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (727)
Q Consensus       408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (727)
                         +++|+.++.+++.+....+..+....++..+|.+|...|++++|+.++++++.+.....  +......++..+|.+|
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence               99999999999998888888888999999999999999999999999999999987754  3455677999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004848          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (727)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (727)
                      ...|++++|+.+|++++.+....   .+......++..+|.+|...|++++|+.+|++++.+.+.. +.......++..+
T Consensus       274 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l  349 (411)
T 4a1s_A          274 IFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL  349 (411)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence            99999999999999999998763   3455668899999999999999999999999999998876 5555667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          565 GVMYYMLGNYSDSYDSFKNAISKLRAI  591 (727)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~  591 (727)
                      |.+|...|++++|+.+|++++.+.+..
T Consensus       350 a~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          350 GNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999985543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=2.7e-26  Score=244.58  Aligned_cols=313  Identities=16%  Similarity=0.200  Sum_probs=277.9

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      +.....+..+|..+...|++++|+.+|++++.+.+.    .....+.++..+|.++...|++++|+.+|++++.+....+
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  120 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN  120 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            566778889999999999999999999999998433    2233456899999999999999999999999999988888


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-----------------  489 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  489 (727)
                      +.+....++..+|.+|...|++++|+.+|++++.+.....  +.+....++..+|.+|...|+                 
T Consensus       121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~  198 (411)
T 4a1s_A          121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA  198 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence            8899999999999999999999999999999999988764  467888999999999999999                 


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 004848          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (727)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (727)
                      +++|+.++++++.+....   .+.+....++..+|.+|...|++++|+.++++++.+.+.. +.......++..+|.+|.
T Consensus       199 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~  274 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHI  274 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHH
Confidence            999999999999987763   3456778899999999999999999999999999999876 455566778999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (727)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (727)
                      ..|++++|+.+|++++.+......  ......++..+|.++...|++++|+.+|++++.+......  .+....++..+|
T Consensus       275 ~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la  350 (411)
T 4a1s_A          275 FLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLG  350 (411)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHH
Confidence            999999999999999999887633  3445789999999999999999999999999999877643  456677999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHH
Q 004848          650 GTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      .+|..+|++++|+.+|++++.+..
T Consensus       351 ~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          351 NAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHh
Confidence            999999999999999999999853

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.96  E-value=5.7e-26  Score=234.22  Aligned_cols=312  Identities=19%  Similarity=0.222  Sum_probs=273.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      ...+...|..++..|++++|+.+|++++...     +.++.....++..+|.++...|++++|+.++++++.+....  .
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   77 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   77 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence            4457778999999999999999999999874     45555556779999999999999999999999999997765  2


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----------------
Q 004848          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-----------------  407 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~-----------------  407 (727)
                      +.+....++..+|.++...|++++|+.++++++.+.+...+  ....+.++..+|.++...|+                 
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            34667889999999999999999999999999999988753  34556789999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (727)
Q Consensus       408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (727)
                         +++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.++
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence               99999999999998888888888899999999999999999999999999999987754  3456677999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004848          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (727)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (727)
                      ...|++++|+.++++++.+....   .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l  309 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL  309 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            99999999999999999998763   3466678899999999999999999999999999998876 4555667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          565 GVMYYMLGNYSDSYDSFKNAISKLRAI  591 (727)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~  591 (727)
                      |.+|...|++++|..+|++++.+.+..
T Consensus       310 a~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          310 GNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999876553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=2.5e-25  Score=242.68  Aligned_cols=351  Identities=15%  Similarity=0.090  Sum_probs=301.9

Q ss_pred             HHHHHHHHHHHHH----cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 004848          265 VMCLHVIAAIYCS----LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLE  336 (727)
Q Consensus       265 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  336 (727)
                      +.+++.+|.+|..    .+++++|+.+|+++++..       +    ..+++.||.+|..    .+++++|+.+|+++.+
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            6778999999999    899999999999998652       2    2358899999999    9999999999999986


Q ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCH
Q 004848          337 VQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDH  408 (727)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~~  408 (727)
                      .          ....+++.||.+|..    .+++++|+.+|+++.+..    .      ..+++.+|.+|..    .+++
T Consensus       108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A          108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----R------DSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHHcCCCCCCCH
Confidence            5          355788999999998    889999999999997652    1      3679999999998    8899


Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (727)
Q Consensus       409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (727)
                      ++|+.+|+++...        ....+++.+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|
T Consensus       168 ~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y  229 (490)
T 2xm6_A          168 VMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADMY  229 (490)
T ss_dssp             HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence            9999999998752        235788999999998    89999999999999864          2357889999999


Q ss_pred             HH----cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhCCCCCcc
Q 004848          485 NR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQST  556 (727)
Q Consensus       485 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (727)
                      ..    .+++++|+.+|+++++.      +     ...++..+|.+|..    .+++++|+.+|+++.+.     +.   
T Consensus       230 ~~g~g~~~~~~~A~~~~~~a~~~------~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~---  290 (490)
T 2xm6_A          230 YFGIGVTQDYTQSRVLFSQSAEQ------G-----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GN---  290 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHTT------T-----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TC---
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CC---
Confidence            97    89999999999999865      1     24578899999998    89999999999999754     11   


Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Q 004848          557 VAGIEAQMGVMYYML-----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARS  628 (727)
Q Consensus       557 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~  628 (727)
                       ..+++.+|.+|...     +++++|+.+|+++++.       .   ...+++.+|.+|...|   ++++|+.+|+++++
T Consensus       291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence             45788999999998     9999999999999874       1   2468899999999876   89999999999987


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCCh
Q 004848          629 ILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRV  700 (727)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~  700 (727)
                      .          ....+++.||.+|..    .+++++|+.+|+++++.          ....++++||.+|..    .+++
T Consensus       360 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          360 K----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCCH
Confidence            5          235689999999999    89999999999999863          236789999999999    8999


Q ss_pred             hHHHHHHHHHHHHHh
Q 004848          701 RSRKAQSLETLLDAN  715 (727)
Q Consensus       701 ~~A~~~~l~~al~~~  715 (727)
                      ++|. .+|+++++.+
T Consensus       420 ~~A~-~~~~~A~~~~  433 (490)
T 2xm6_A          420 VQAW-AWFDTASTND  433 (490)
T ss_dssp             HHHH-HHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHCC
Confidence            9999 9999999998

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.96  E-value=2.4e-25  Score=229.56  Aligned_cols=309  Identities=16%  Similarity=0.172  Sum_probs=271.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004848          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (727)
Q Consensus       309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (727)
                      ..++..|.++...|++++|+.+|+++++..     +.+ .....++..+|.++...|++++|+.++++++.+.....  .
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~   78 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D   78 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence            357889999999999999999999999982     112 22367899999999999999999999999999987765  3


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------
Q 004848          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR--------------------  447 (727)
Q Consensus       388 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------  447 (727)
                      ....+.++..+|.++...|++++|+.++.+++.+....++.+..+.++..+|.++...|+                    
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA  158 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence            355678899999999999999999999999999998888888889999999999999999                    


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (727)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (727)
                      +++|+.++++++.+.....  +.+....++..+|.++...|++++|+.++++++.+....   .+......++..+|.++
T Consensus       159 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence            9999999999999887764  357778899999999999999999999999999997763   34566778999999999


Q ss_pred             HhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004848          528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (727)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  607 (727)
                      ...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+......  ......++..+|
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la  310 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLG  310 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence            99999999999999999999876 555566788999999999999999999999999999887654  344677899999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          608 LACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                      .++...|++++|..+|++++.+...
T Consensus       311 ~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          311 NAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=6.7e-27  Score=245.10  Aligned_cols=317  Identities=16%  Similarity=0.141  Sum_probs=251.2

Q ss_pred             HHHHHcCChhHHHH-HHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004848          273 AIYCSLGQYNEAIP-VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (727)
Q Consensus       273 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (727)
                      .++...|+|++|+. .|++++.+.     +..+......++.+|.++...|++++|+.+|+++++.        +|....
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~   99 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME   99 (368)
T ss_dssp             -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred             hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            36777899999999 999999885     3332222334889999999999999999999999988        688889


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-
Q 004848          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-  430 (727)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-  430 (727)
                      ++..+|.++...|++++|+.+|++++.+.+..        ..++..+|.++...|++++|+.+|++++........... 
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  171 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  171 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            99999999999999999999999999987653        367999999999999999999999999864321111000 


Q ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          431 ---------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCEN  499 (727)
Q Consensus       431 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (727)
                               ....+..++.++ ..|++++|+.+|++++..        .|.  ...++..+|.+|...|++++|+.+|++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  242 (368)
T 1fch_A          172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  242 (368)
T ss_dssp             --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                     011122466666 899999999999999998        666  788999999999999999999999999


Q ss_pred             HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (727)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (727)
                      ++.+         .|....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.
T Consensus       243 al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          243 ALSV---------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence            9998         23346789999999999999999999999999986543       5788999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC---CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          580 SFKNAISKLRAIGER---KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       580 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      +|++++.+.+...+.   ..+....++..+|.++...|++++|..++.++++.+.+.++
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence            999999987654211   11223678999999999999999999999999998877654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=237.26  Aligned_cols=301  Identities=15%  Similarity=0.169  Sum_probs=260.2

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      +.....+..+|..++..|++++|+.+|++++...+....        ++..++.++...|++++|+.++.+++..     
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----   85 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------CLPVHIGTLVELNKANELFYLSHKLVDL-----   85 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------THHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------hHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence            444567889999999999999999999999998776653        3778899999999999999999999863     


Q ss_pred             CChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          427 QDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                       .|....++..+|.++...| ++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++....
T Consensus        86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  156 (330)
T 3hym_B           86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK  156 (330)
T ss_dssp             -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred             -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence             3445678899999999999 999999999999987        677788999999999999999999999999999942


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (727)
                               ....++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.+|++++
T Consensus       157 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          157 ---------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             ---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                     234567789999999999999999999999876544       5788999999999999999999999999


Q ss_pred             HHHHHhCCCCc-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHH
Q 004848          586 SKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI  664 (727)
Q Consensus       586 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  664 (727)
                      .+.+..+.... +....++..+|.++...|++++|+.+|++++++        .|....++..+|.+|..+|++++|+.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHH
Confidence            98766544322 233578999999999999999999999999998        777888999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHhCChh
Q 004848          665 LEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVR  701 (727)
Q Consensus       665 ~~~al~~~~~~~g~~~p~~~~~~~~La~~~-~~~g~~~  701 (727)
                      |++++++        .|+...++..++.++ ...|+.+
T Consensus       293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            9999975        677888999999998 4556544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=1.5e-26  Score=242.46  Aligned_cols=318  Identities=16%  Similarity=0.143  Sum_probs=249.5

Q ss_pred             HHHHhcCHHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848          359 AHVQALQFSEAQK-FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (727)
Q Consensus       359 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (727)
                      ++...|+|++|+. .|.+++.+.+.....    .+..++.+|.++...|++++|+.+|++++.      ..|....++..
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~  103 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLR----DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ------QDPKHMEAWQY  103 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTT----TCSSHHHHHHHHHHTTCHHHHHHHHHHHHH------SCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCccc----chHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHH
Confidence            5666789999999 999998776544311    123478999999999999999999999985      34566788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC-----
Q 004848          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP-----  512 (727)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----  512 (727)
                      +|.++...|++++|+.+|++++.+        .|....++..+|.+|...|++++|+.+|++++.+.........     
T Consensus       104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T 1fch_A          104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG  175 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            999999999999999999999998        6888899999999999999999999999999987432100000     


Q ss_pred             --hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004848          513 --PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (727)
Q Consensus       513 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (727)
                        .......+..++.++ ..|++++|+.+|++++.+.+...     ...++..+|.+|...|++++|+.+|++++.+.  
T Consensus       176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--  247 (368)
T 1fch_A          176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--  247 (368)
T ss_dssp             ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence              000011122466666 89999999999999999866521     25788899999999999999999999999862  


Q ss_pred             hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                            +....++..+|.++...|++++|+.+|++++.+        +|....++..+|.+|...|++++|+.+|++++.
T Consensus       248 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          248 ------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                  223578999999999999999999999999998        788889999999999999999999999999999


Q ss_pred             HHHHhcC---CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          671 IREEKLG---TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       671 ~~~~~~g---~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.....+   ..++....++..||.+|...|++++|. ..++++++..+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~  362 (368)
T 1fch_A          314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDLSTLLT  362 (368)
T ss_dssp             HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCHHHHHH
T ss_pred             hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHHHHHHH
Confidence            8643311   122334789999999999999999999 999988887665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.2e-25  Score=231.62  Aligned_cols=295  Identities=16%  Similarity=0.112  Sum_probs=256.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (727)
Q Consensus       310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (727)
                      .+..+|..+...|++++|+.+|++++..        +|....++..++.++...|++++|+.++++++...+...     
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----   90 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP-----   90 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----
Confidence            3778999999999999999999999988        677788888999999999999999999999999876543     


Q ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          390 EEAADRRLMGLICETKG-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (727)
                         .++..+|.++...| ++++|+.+|++++.      ..|....++..+|.++...|++++|+.+|++++..       
T Consensus        91 ---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------  154 (330)
T 3hym_B           91 ---VSWFAVGCYYLMVGHKNEHARRYLSKATT------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-------  154 (330)
T ss_dssp             ---HHHHHHHHHHHHSCSCHHHHHHHHHHHHT------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHH------hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence               56999999999999 99999999999875      34555678999999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                       .|....++..+|.++...|++++|+.++++++...         +....++..+|.++...|++++|+.++++++.+.+
T Consensus       155 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  224 (330)
T 3hym_B          155 -MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK  224 (330)
T ss_dssp             -TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             -ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence             67677888899999999999999999999999872         33467899999999999999999999999999986


Q ss_pred             hCCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004848          549 DAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (727)
Q Consensus       549 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  626 (727)
                      ......  +....++..+|.++...|++++|+.+|++++.+.        +....++..+|.++...|++++|+.+|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            553221  2334688899999999999999999999999872        123568999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHH-HHcCChH
Q 004848          627 RSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLD  659 (727)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  659 (727)
                      +++        .|+...++..++.++ ...|+.+
T Consensus       297 l~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          297 LGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             Hcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            998        888888999999998 4556543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.2e-23  Score=221.65  Aligned_cols=349  Identities=12%  Similarity=0.075  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHH-----------HHHHH
Q 004848          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQ-----------KFCQM  375 (727)
Q Consensus       309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~-----------~~~~~  375 (727)
                      ....+-...+...+++++|...++++.+....+  +.++... .++.+  .......+++..+.           ..+++
T Consensus        13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~   89 (383)
T 3ulq_A           13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE   89 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence            335555666788999999999999987765432  1123322 22322  22223344444444           45544


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY  455 (727)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (727)
                      .-......   ........++.+|.++...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.++
T Consensus        90 i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~  166 (383)
T 3ulq_A           90 IDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA  166 (383)
T ss_dssp             HHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            32211111   111223346679999999999999999999999888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHH
Q 004848          456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ  535 (727)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  535 (727)
                      +++++++....+ ..+..+.++..+|.+|...|++++|+.+|++++.+.++.   .+.+..+.++.++|.+|..+|++++
T Consensus       167 ~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~  242 (383)
T 3ulq_A          167 RQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQPQLMGRTLYNIGLCKNSQSQYED  242 (383)
T ss_dssp             HHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHCCCHHH
Confidence            999999887632 256778999999999999999999999999999998874   3567778899999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004848          536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (727)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  615 (727)
                      |+.+|++++.+.+.. +..+..+.++..+|.+|..+|++++|+.++++++.+....++..   ....+..+|.++...|+
T Consensus       243 A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          243 AIPYFKRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI---YLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             HHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCc
Confidence            999999999998876 44355688999999999999999999999999999988765432   23346779999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (727)
                      +    ..+++++..+++...  .+....++..+|.+|..+|++++|..+|++++.+.+++..
T Consensus       319 ~----~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          319 E----EAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             H----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             H----HHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            5    445555555554422  5777889999999999999999999999999999876654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.3e-23  Score=221.52  Aligned_cols=354  Identities=12%  Similarity=0.063  Sum_probs=275.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHcCChhHHH-----------
Q 004848          218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-AAIYCSLGQYNEAI-----------  285 (727)
Q Consensus       218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------  285 (727)
                      ++.....+.....+...++ +++|..+++++...+...   ..+.+....+..+ .......+++..+.           
T Consensus         9 ~~~v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~---~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~   84 (383)
T 3ulq_A            9 SSSIGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQM---EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS   84 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchh
Confidence            3455666777777888887 999999999988776543   2333333222222 22223344455554           


Q ss_pred             HHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004848          286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ  365 (727)
Q Consensus       286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  365 (727)
                      ..+++.-...    ...........++.+|.++...|++++|+.+|++++.+....  .+.+..+.++..+|.+|...|+
T Consensus        85 ~~~~~i~~~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~  158 (383)
T 3ulq_A           85 DLLLEIDKKQ----ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQ  158 (383)
T ss_dssp             HHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHhcC----CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCC
Confidence            5555432221    111122233456779999999999999999999999886553  2235578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004848          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (727)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (727)
                      +++|+.++++++.+.+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..+
T Consensus       159 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            99999999999999988753 24566789999999999999999999999999999998888899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH
Q 004848          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS  525 (727)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  525 (727)
                      |++++|+.+|++++.+.+...  +.|....++..+|.+|...|++++|+.++++++.+.....    .+.....+..++.
T Consensus       238 g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~  311 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG----DVIYLSEFEFLKS  311 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Confidence            999999999999999988765  1278899999999999999999999999999999977642    2333344778999


Q ss_pred             HHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      ++...|++    ..+.+++...... +.......++..+|.+|...|++++|..+|++++.+.+.+..
T Consensus       312 ~~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          312 LYLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HHTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HHhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            99999995    4455555555554 445566778899999999999999999999999998776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=2.1e-25  Score=233.55  Aligned_cols=305  Identities=14%  Similarity=0.125  Sum_probs=239.0

Q ss_pred             HHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004848          286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ  365 (727)
Q Consensus       286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  365 (727)
                      ..+..+....     +.++......++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|+
T Consensus        48 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~  114 (365)
T 4eqf_A           48 SASEKGYYFH-----TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENEN  114 (365)
T ss_dssp             -----CCCCC-----SSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhcc-----cCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCC
Confidence            4455555443     2222223345889999999999999999999999998        78889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHH
Q 004848          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDT  441 (727)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~  441 (727)
                      +++|+.+|++++.+.|..        ..++..+|.+|...|++++|+.+|++++.+........    .....+..+|.+
T Consensus       115 ~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~  186 (365)
T 4eqf_A          115 EQAAIVALQRCLELQPNN--------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS  186 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred             HHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence            999999999999987554        36799999999999999999999999987533222111    123445567999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHH
Q 004848          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (727)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (727)
                      +...|++++|+.+|++++.+        .|.  ...++..+|.+|...|++++|+.+|++++.+         .|....+
T Consensus       187 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~  249 (365)
T 4eqf_A          187 PVDSSVLEGVKELYLEAAHQ--------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------RPEDYSL  249 (365)
T ss_dssp             --CCHHHHHHHHHHHHHHHH--------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHH
T ss_pred             HhhhhhHHHHHHHHHHHHHh--------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHH
Confidence            99999999999999999998        566  6789999999999999999999999999998         3334678


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc---
Q 004848          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS---  596 (727)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---  596 (727)
                      +..+|.+|...|++++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.+|++++.+.+......+   
T Consensus       250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  322 (365)
T 4eqf_A          250 WNRLGATLANGDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH  322 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence            9999999999999999999999999986554       578999999999999999999999999998776433211   


Q ss_pred             -hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          597 -AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       597 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                       .....+|..++.++...|+.+.|..+..+.+..+.+.++
T Consensus       323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~  362 (365)
T 4eqf_A          323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFN  362 (365)
T ss_dssp             ----CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcC
Confidence             123578999999999999999999988887766554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=1.9e-24  Score=226.33  Aligned_cols=285  Identities=18%  Similarity=0.121  Sum_probs=227.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                      ..++.+|.++...|++++|+.+|++++..      .|....++..+|.+|...|++++|+.+|++++.+        .|.
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~  131 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPN  131 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence            35889999999999999999999999864      4555788999999999999999999999999998        788


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      ...++..+|.+|...|++++|+.+|++++.+......... .......+..+|.++...|++++|+.+|++++.+.+...
T Consensus       132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  211 (365)
T 4eqf_A          132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI  211 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred             CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence            8899999999999999999999999999998332100000 001133445669999999999999999999999865421


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (727)
                           ...++..+|.+|...|++++|+.+|++++.+.        +....++..+|.++...|++++|+.+|++++++  
T Consensus       212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  276 (365)
T 4eqf_A          212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--  276 (365)
T ss_dssp             -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence                 24688899999999999999999999999872        223578999999999999999999999999999  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHhCChhHHHHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD----VDDEKRRLAELLKEAGRVRSRKAQS  707 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~  707 (727)
                            +|....++..+|.+|..+|++++|+.+|++++.+.....++.++.    ...++..|+.++...|+.+.+. ..
T Consensus       277 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~  349 (365)
T 4eqf_A          277 ------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ-AA  349 (365)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH-HH
T ss_pred             ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence                  888899999999999999999999999999999976544433222    3678999999999999999998 66


Q ss_pred             HHHHHH
Q 004848          708 LETLLD  713 (727)
Q Consensus       708 l~~al~  713 (727)
                      .++.+.
T Consensus       350 ~~~~l~  355 (365)
T 4eqf_A          350 NLGDLD  355 (365)
T ss_dssp             HTTCCG
T ss_pred             HHhhHH
Confidence            655433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=9.3e-24  Score=216.99  Aligned_cols=282  Identities=16%  Similarity=0.119  Sum_probs=237.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                      ..++.+|..+...|++++|+.+|++++..      .|....++..+|.++...|++++|+.++++++..        .|.
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~   87 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   87 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcC
Confidence            34788999999999999999999999763      3455678899999999999999999999999998        677


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH--------------HH-HHHhcccHHHHH
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV--------------SS-IYESMNELEQAI  537 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~  537 (727)
                      ...++..+|.++...|++++|+.++++++......         ...+..+              +. ++...|++++|+
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---------TTC--------------------CCTTSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence            88999999999999999999999999999874331         1122222              44 588899999999


Q ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHH
Q 004848          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN  617 (727)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  617 (727)
                      .++++++...+..       ..++..+|.++...|++++|+.++++++...        +....++..+|.++...|+++
T Consensus       159 ~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~  223 (327)
T 3cv0_A          159 TLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQ  223 (327)
T ss_dssp             HHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHH
Confidence            9999999886543       4788999999999999999999999999862        223578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHH
Q 004848          618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA----NPDVDDEKRRLAEL  693 (727)
Q Consensus       618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~----~p~~~~~~~~La~~  693 (727)
                      +|+.+|+++++.        .|....++..+|.+|...|++++|+.+|++++.+.....+..    ......++..++.+
T Consensus       224 ~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  295 (327)
T 3cv0_A          224 EALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML  295 (327)
T ss_dssp             HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence            999999999998        788888999999999999999999999999998752111100    01178899999999


Q ss_pred             HHHhCChhHHHHHHHHHHHHHhhh-cCCC
Q 004848          694 LKEAGRVRSRKAQSLETLLDANSR-VNND  721 (727)
Q Consensus       694 ~~~~g~~~~A~~~~l~~al~~~p~-~~~~  721 (727)
                      +...|++++|. ..++++++..|. ..-+
T Consensus       296 ~~~~g~~~~A~-~~~~~~l~~~~~~~~~~  323 (327)
T 3cv0_A          296 LNVMNRPDLVE-LTYAQNVEPFAKEFGLQ  323 (327)
T ss_dssp             HHHTTCHHHHH-HHTTCCSHHHHHHTTSS
T ss_pred             HHhcCCHHHHH-HHHHHHHHhcchhhhHH
Confidence            99999999999 999999999888 5433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=6.4e-22  Score=207.98  Aligned_cols=337  Identities=13%  Similarity=0.069  Sum_probs=259.0

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HHHHcCChhHHH---------HHHHHhcccchhcc
Q 004848          231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA--IYCSLGQYNEAI---------PVLEQSIEIPVIEE  299 (727)
Q Consensus       231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~~~~~~~  299 (727)
                      ....++ +++|+.+++++...+....   .+.... .++.+-.  .....+.+..+.         ..++..-...    
T Consensus        22 ~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~----   92 (378)
T 3q15_A           22 MIRQFS-VPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ----   92 (378)
T ss_dssp             HHHTTC-HHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG----
T ss_pred             HHHHcC-HHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC----
Confidence            356765 9999999999877665442   223332 2332222  222234444444         5555432221    


Q ss_pred             CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004848          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (727)
Q Consensus       300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (727)
                      .+.........++.+|..+...|++++|+.+|++++.+....  .+.+..+.++..+|.+|...|++++|+.++++++.+
T Consensus        93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~  170 (378)
T 3q15_A           93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI  170 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            111223334467889999999999999999999999986553  224668889999999999999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL  459 (727)
Q Consensus       380 ~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  459 (727)
                      .+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.++++++
T Consensus       171 ~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          171 YQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            987653 1345678899999999999999999999999999998888888889999999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHH
Q 004848          460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (727)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (727)
                      .+.+...   +|....++..+|.+|...|++++|+.++++++.+.....    .+.....+..++.++...++.    ..
T Consensus       250 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~----~~  318 (378)
T 3q15_A          250 KVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDE----RK  318 (378)
T ss_dssp             HHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCH----HH
T ss_pred             HHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcH----HH
Confidence            9988765   677799999999999999999999999999999976642    233344578888999888883    33


Q ss_pred             HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (727)
Q Consensus       540 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (727)
                      +.+++...... +.......++..+|.+|...|++++|..+|++++.+.+++
T Consensus       319 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  369 (378)
T 3q15_A          319 IHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI  369 (378)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            34444444333 3444556778899999999999999999999999986654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=2e-22  Score=211.82  Aligned_cols=336  Identities=12%  Similarity=0.093  Sum_probs=257.3

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH--HHHhcCHHHHH---------HHHHHHHHHHHhcCC
Q 004848          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA--HVQALQFSEAQ---------KFCQMALDIHKDNGS  385 (727)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~  385 (727)
                      .+...+++++|...++++......+-  .+... ..++.+...  ....+.+..+.         ..+++.-......  
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--   95 (378)
T 3q15_A           21 KMIRQFSVPDAEILKAEVEQDIQQME--EDQDL-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--   95 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHGGGBC--CCHHH-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHhc--ccHHH-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence            34789999999999999876643321  12222 233333222  11222322222         3333322111111  


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (727)
Q Consensus       386 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (727)
                       +.......++.+|..+...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.+++++++++...
T Consensus        96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A           96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence             1122334677899999999999999999999999888888888999999999999999999999999999999998765


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                      .+ ..+..+.++..+|.+|...|++++|+.+|++++.+.+..   .+....+.++.++|.+|..+|++++|+.+|++++.
T Consensus       175 ~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          175 PL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            32 134678899999999999999999999999999998764   34556788999999999999999999999999999


Q ss_pred             HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC---HHHHHHH
Q 004848          546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS---INEAVEL  622 (727)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~  622 (727)
                      +.... +.+.. ..++..+|.+|..+|++++|+.++++++.+....+...   ....+..++.++...++   +.+|+.+
T Consensus       251 ~~~~~-~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          251 VSREK-VPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF---YKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHH-CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC---HHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHhh-CChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            88765 33333 78899999999999999999999999999876655432   33456788889988888   5555555


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      +++       ...  .+....++..+|.+|...|++++|..+|++++++.+++.
T Consensus       326 ~~~-------~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~  370 (378)
T 3q15_A          326 FEK-------KNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL  370 (378)
T ss_dssp             HHH-------TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh-------CCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            544       222  567777889999999999999999999999999876654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=1.9e-23  Score=214.72  Aligned_cols=283  Identities=14%  Similarity=0.117  Sum_probs=237.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (727)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (727)
                      ....++.+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++...+..   
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---   88 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---   88 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC---
Confidence            3445889999999999999999999999998        68888999999999999999999999999999986543   


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH--------------HH-HHHHcCCHHHH
Q 004848          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI--------------GD-TYLSLSRYDEA  451 (727)
Q Consensus       387 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A  451 (727)
                           ..++..+|.++...|++++|+.+|++++....      .....+..+              +. ++...|++++|
T Consensus        89 -----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  157 (327)
T 3cv0_A           89 -----IAVHAALAVSHTNEHNANAALASLRAWLLSQP------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC  157 (327)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST------TTTTC--------------------CCTTSHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH
Confidence                 36789999999999999999999999976422      112222222              44 58889999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcc
Q 004848          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (727)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (727)
                      +.++++++..        .|....++..+|.++...|++++|+.++++++...         +....++..+|.++...|
T Consensus       158 ~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          158 RTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------PDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             HHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcC
Confidence            9999999988        67788999999999999999999999999999982         334678999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHH
Q 004848          532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----AFFGVALNQMG  607 (727)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la  607 (727)
                      ++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++.+.+.......    .....++..+|
T Consensus       221 ~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~  293 (327)
T 3cv0_A          221 RPQEALDAYNRALDINPGY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR  293 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence            9999999999999986543       467889999999999999999999999988544222211    11567899999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          608 LACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      .++...|++++|..++++++..+....+
T Consensus       294 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          294 MLLNVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence            9999999999999999999998766544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=2.7e-22  Score=220.97  Aligned_cols=425  Identities=12%  Similarity=0.008  Sum_probs=310.8

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 004848          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (727)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  294 (727)
                      ..+|....+|..++.. ...|+ +++|+..|++++..+         |.....|..++..+...|++++|+.+|++++..
T Consensus         7 ~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~   75 (530)
T 2ooe_A            7 EENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK   75 (530)
T ss_dssp             HHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             hhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            4578899999999984 77886 999999999999764         455778999999999999999999999999988


Q ss_pred             chhccCccchHHHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-------
Q 004848          295 PVIEEGQEHALAKFAGHMQLGD-TYAMLGQLENSLM----CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ-------  362 (727)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------  362 (727)
                      .     + +.    ..|..++. +....|++++|.+    .|++++..    .|. ++....+|...+.....       
T Consensus        76 ~-----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~  140 (530)
T 2ooe_A           76 V-----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSY  140 (530)
T ss_dssp             C-----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSST
T ss_pred             C-----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccH
Confidence            5     2 22    23666664 4456788888776    55555543    232 34556777777776655       


Q ss_pred             --hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848          363 --ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-------------ETKGDHEAALEHLVLASMTMIANDQ  427 (727)
Q Consensus       363 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~  427 (727)
                        .|+++.|..+|++++.. |..    ..  ...+.......             ...+++..|...+............
T Consensus       141 ~~~~~~~~a~~~y~~al~~-P~~----~~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~  213 (530)
T 2ooe_A          141 AENQRITAVRRVYQRGCVN-PMI----NI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR  213 (530)
T ss_dssp             THHHHHHHHHHHHHHHTTS-CCT----TH--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhHHHHHHHHHHHHHhc-hhh----hH--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence              78999999999999983 221    11  11222221111             1345677777766653322222221


Q ss_pred             -----Ch-------hHHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-
Q 004848          428 -----DA-------EVASVDCSIGDTYLS----LSRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-  486 (727)
Q Consensus       428 -----~~-------~~~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-  486 (727)
                           .|       .....|.........    .++.    ..++..|++++..        .|....+|..+|.++.. 
T Consensus       214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~  285 (530)
T 2ooe_A          214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS  285 (530)
T ss_dssp             SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence                 11       112344333322222    1232    4788899999998        68888999999999986 


Q ss_pred             ------cCChH-------HHHHHHHHHHH-HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          487 ------TGKLR-------ESKSYCENALR-IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       487 ------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                            .|+++       +|+..|++++. +         .|....++..++.++...|++++|...|++++.+.+..  
T Consensus       286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--  354 (530)
T 2ooe_A          286 SKLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--  354 (530)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC--
T ss_pred             chhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC--
Confidence                  79987       88999998886 4         23446789999999999999999999999999863321  


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHH
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~  631 (727)
                          ...+|..++.++...|++++|+.+|+++++..    +    .....+...+.+ +...|++++|..+|+++++.  
T Consensus       355 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~----~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--  420 (530)
T 2ooe_A          355 ----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----R----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--  420 (530)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----T----CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred             ----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----C----CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence                13578899999999999999999999998741    1    112334444444 34689999999999999998  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                            .|+...++..++.++...|++++|..+|++++..     .+.+|. ....+.....+....|+.+.+. ..+.+
T Consensus       421 ------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r  488 (530)
T 2ooe_A          421 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKR  488 (530)
T ss_dssp             ------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHH
Confidence                  6777889999999999999999999999999974     233453 3456777788888999999999 99999


Q ss_pred             HHHHhhh
Q 004848          711 LLDANSR  717 (727)
Q Consensus       711 al~~~p~  717 (727)
                      +++..|+
T Consensus       489 ~~~~~p~  495 (530)
T 2ooe_A          489 RFTAFRE  495 (530)
T ss_dssp             HHHHTHH
T ss_pred             HHHHCch
Confidence            9999996

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.8e-22  Score=205.68  Aligned_cols=282  Identities=17%  Similarity=0.231  Sum_probs=227.9

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      .++|....++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.+|...|++++|+.++++++.+..
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999887777899999999999999999999999999999999976


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (727)
                      ... +.+.+....++..+|.++...|++++|+.+|++++.+.....+. .+....++..+|.++...|++++|+.+|+++
T Consensus       101 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          101 KTL-GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHh-CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            642 23457778999999999999999999999999999998654222 3456778999999999999999999999999


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCCcc------HHHHHHHHHHHHHHcCC
Q 004848          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHPD------TLGVYSNLAGTYDAIGR  657 (727)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~~~~~~g~  657 (727)
                      +.+.........+....++..+|.++...|++++|+.+|++++.+..... +...+.      ....+..++..+...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS  259 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence            99988876666677888999999999999999999999999998865421 111111      23344555566667778


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +.+|...+++++.        .+|....++..+|.+|...|++++|. .+|++++++.|+
T Consensus       260 ~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~~~  310 (311)
T 3nf1_A          260 FGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAE-TLEEAAMRSRKQ  310 (311)
T ss_dssp             SCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHC-
T ss_pred             HHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHhhc
Confidence            8888888888775        37999999999999999999999999 999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.91  E-value=6.2e-21  Score=200.16  Aligned_cols=312  Identities=13%  Similarity=0.074  Sum_probs=255.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (727)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (727)
                      ...++..+|.++...|++++|+.++++++...+..   .....+.++..+|.++...|++++|+.++.+++.+....+..
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            45677888999999999999999999999876422   223456678999999999999999999999999998888777


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      .....++..+|.++...|++++|+.++++++.+.....+..++....++..+|.++...|++++|..++++++.+.....
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence            77788899999999999999999999999999988876555577888999999999999999999999999999976532


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                          ++....++..+|.++...|++++|+.++++++.+.... +... ........++.++...|++++|..++++++..
T Consensus       170 ----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          170 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             ----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence                23356788999999999999999999999999987654 2221 11222224556788999999999999988753


Q ss_pred             HHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF  667 (727)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  667 (727)
                      .    ..........+..+|.++...|++++|..++++++........  .+....++..+|.++...|++++|...|++
T Consensus       245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  318 (373)
T 1hz4_A          245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  318 (373)
T ss_dssp             C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            2    1111222346788999999999999999999999998776322  234456889999999999999999999999


Q ss_pred             HHHHHHH
Q 004848          668 VVGIREE  674 (727)
Q Consensus       668 al~~~~~  674 (727)
                      ++.+...
T Consensus       319 al~~~~~  325 (373)
T 1hz4_A          319 ALKLANR  325 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9988653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.91  E-value=8.2e-22  Score=200.80  Aligned_cols=279  Identities=19%  Similarity=0.176  Sum_probs=228.1

Q ss_pred             hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~  421 (727)
                      .+.++|....++..+|.++...|++++|+.++++++.+............+.++..+|.++...|++++|+.+|++++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999887765556777889999999999999999999999999988


Q ss_pred             HHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          422 MIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (727)
Q Consensus       422 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (727)
                      ....  .+.+....++..+|.+|...|++++|+.++++++.+.....+.+++....++..+|.++...|++++|+.+|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7665  66788899999999999999999999999999999998887777899999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC----CCC----ccHHHHHHHHHHHHHHc
Q 004848          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP----GQQ----STVAGIEAQMGVMYYML  571 (727)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~----~~~~~~~~~la~~~~~~  571 (727)
                      ++.+..... +.+.+....++..+|.+|...|++++|+.++++++.+.+...    ...    ......+..++..+...
T Consensus       179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3nf1_A          179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG  257 (311)
T ss_dssp             HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence            999987753 344677788999999999999999999999999999865420    000    11233344555556666


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      +.+.+|...+.++...        .+....++..+|.+|...|++++|+.+|++++++
T Consensus       258 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          258 TSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7777777777776653        4557789999999999999999999999999988

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-21  Score=193.77  Aligned_cols=237  Identities=16%  Similarity=0.155  Sum_probs=211.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      ..+..+..+|.++...|++++|+.+|++++..        . ....++..+|.++...|++++|+.++++++.+....  
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--   71 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM--   71 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence            45678899999999999999999999999998        3 556889999999999999999999999999997553  


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (727)
                      ....+....++..+|.++...|++++|+.+|++++.+.+.               +.++...|++++|+..+++++..  
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence            2234445789999999999999999999999999987432               45677888999999999998874  


Q ss_pred             HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (727)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (727)
                            .+....++..+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+|++++
T Consensus       135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  3456789999999999999999999999999998        78888899999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .+        +|....++..+|.++...|++++|. ..|+++++++|.
T Consensus       201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~  239 (258)
T 3uq3_A          201 EK--------DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKDAE  239 (258)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             Hh--------CHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhChh
Confidence            87        5777889999999999999999999 999999999954

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=2.2e-22  Score=201.00  Aligned_cols=263  Identities=9%  Similarity=-0.016  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (727)
                      ..++.+|.+++..|++++|+.+|++++...|....        ++..+|.++...|++++|+.+|.+++.   ...+...
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~   72 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKA   72 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhH
Confidence            56788999999999999999999999998876543        489999999999999999999999976   1233344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (727)
                      ...++..+|.++...|++++|+.+|+++++.        .|....++..+|.+|...|++++|+.+|++++.+       
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------  137 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------  137 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence            4778999999999999999999999999998        7888899999999999999999999999999887       


Q ss_pred             CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004848          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISK  587 (727)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  587 (727)
                        .+....++..+|......+++++|+.+|++++++.+..       ..++..+|.++...|+   +++|+.+|++++++
T Consensus       138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  208 (272)
T 3u4t_A          138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV  208 (272)
T ss_dssp             --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence              33446789999944455569999999999999987654       4678899999999999   99999999999998


Q ss_pred             HHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (727)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (727)
                      ..............++..+|.+|...|++++|+.+|++++++        +|+...++..++.+....+
T Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence            765443322335678999999999999999999999999999        8888888888877765443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=1.2e-22  Score=211.13  Aligned_cols=241  Identities=11%  Similarity=0.037  Sum_probs=214.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHh
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE  505 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  505 (727)
                      ..|....++..+|.++...|++++|+..|++++.+        +|....+|+.+|.++..+|+ +++|+.+|++++.+  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            46778899999999999999999999999999998        89999999999999999997 99999999999999  


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (727)
                             .|....+|+++|.++..+|++++|+..|++++.+.+..       ..+|+++|.++..+|++++|+.+|++++
T Consensus       162 -------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                   45567899999999999999999999999999997766       5789999999999999999999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--C
Q 004848          586 SKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEA-----VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG--R  657 (727)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~  657 (727)
                      .+        .+....+|+++|.++.. .|.+++|     +.+|++++.+        +|+...+|++++.++...|  +
T Consensus       228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~  291 (382)
T 2h6f_A          228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK  291 (382)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred             Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence            97        23356899999999999 5555777     5999999999        8999999999999999988  6


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC--------C-hhHHHHHHHHHH-HHHhhh
Q 004848          658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG--------R-VRSRKAQSLETL-LDANSR  717 (727)
Q Consensus       658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g--------~-~~~A~~~~l~~a-l~~~p~  717 (727)
                      +++|+..++++ +        .+|+...++..||.+|..+|        + +++|+ .+|+++ ++++|.
T Consensus       292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~  351 (382)
T 2h6f_A          292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTI  351 (382)
T ss_dssp             CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGG
T ss_pred             hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCch
Confidence            89998888765 2        26778889999999999985        2 58999 999999 999986

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=3.5e-22  Score=207.52  Aligned_cols=253  Identities=11%  Similarity=0.006  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCC
Q 004848          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNKGE  468 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~  468 (727)
                      ....++..+|.++...|++++|+..|++++.+      .|....+|+.+|.++..+|+ +++|+.+|++++.+       
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-------  161 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-------  161 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-------
Confidence            34567899999999999999999999999864      67778899999999999997 99999999999999       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                       +|....+|+++|.++..+|++++|+.+|++++.+         .|....+|.++|.++..+|++++|+.+|++++++.+
T Consensus       162 -~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l---------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P  231 (382)
T 2h6f_A          162 -QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV  231 (382)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence             8999999999999999999999999999999999         455678999999999999999999999999999977


Q ss_pred             hCCCCCccHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC--CHHHHH
Q 004848          549 DAPGQQSTVAGIEAQMGVMYYM-LGNYSDS-----YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEAV  620 (727)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~  620 (727)
                      ..       ..+|+++|.++.. .|.+++|     +.+|++++.+        .+....+|+++|.++...|  ++++|+
T Consensus       232 ~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a~  296 (382)
T 2h6f_A          232 RN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNLL  296 (382)
T ss_dssp             TC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred             CC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHHH
Confidence            66       5789999999999 5555888     5889999986        2334679999999999988  689998


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHHHHhcCCCChhHHHHHHHH
Q 004848          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG--------R-LDDAIEILEFV-VGIREEKLGTANPDVDDEKRRL  690 (727)
Q Consensus       621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~g~~~p~~~~~~~~L  690 (727)
                      +.++++ +.        +|+...++..||.+|..+|        + +++|+.+|+++ +++        +|.....|..+
T Consensus       297 ~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~~~  359 (382)
T 2h6f_A          297 NQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWRYI  359 (382)
T ss_dssp             HHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHHHH
T ss_pred             HHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHHHH
Confidence            888776 43        7888889999999999985        2 58899999988 654        79999999999


Q ss_pred             HHHHHHh
Q 004848          691 AELLKEA  697 (727)
Q Consensus       691 a~~~~~~  697 (727)
                      +..+..+
T Consensus       360 ~~~l~~~  366 (382)
T 2h6f_A          360 GRSLQSK  366 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=1.4e-22  Score=202.42  Aligned_cols=247  Identities=14%  Similarity=0.092  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      ..++.+|.+++..|++++|+.+|+++++.        .|....++..+|.+|...|++++|+.++++++..      ..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~   69 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK------VNA   69 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------cCc
Confidence            45678999999999999999999999987        6777779999999999999999999999999984      222


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      ......++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.+|++++.+     
T Consensus        70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            33447789999999999999999999999999987654       368899999999999999999999999875     


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVV  669 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al  669 (727)
                         .+....++..+|......+++++|+.+|++++++        .|....++..+|.++...|+   +++|+..|++++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence               2234678999995555566999999999999999        78888899999999999999   999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ++......+..+....++..+|.+|...|++++|+ .+|+++++++|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~  253 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPT  253 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCcc
Confidence            98754322112235688999999999999999999 999999999997

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.89  E-value=2.9e-20  Score=194.98  Aligned_cols=313  Identities=11%  Similarity=0.001  Sum_probs=250.3

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004848          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (727)
Q Consensus       264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (727)
                      ...++..+|.++...|++++|+.++++++...+    ..++.....++..+|.++...|++++|+.++++++.+.+..  
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   86 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   86 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence            356778889999999999999999999998752    22333455678899999999999999999999999997763  


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (727)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  423 (727)
                      .+......++..+|.++...|++++|+.++++++.+.+.......+..+.++..+|.++...|++++|+.++.+++.+..
T Consensus        87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            11123456788999999999999999999999999998876654455677889999999999999999999999998766


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENAL  501 (727)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al  501 (727)
                      ..+.. ....++..+|.++...|++++|+.++++++.+.....   .+.....  ...++.++...|++++|..++++++
T Consensus       167 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          167 SYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             TSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            54433 3567889999999999999999999999998854432   2211222  2345566889999999999999887


Q ss_pred             HHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (727)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (727)
                      ....    +. .......+..++.++...|++++|+..+++++...+.. +.......++..+|.++...|++++|...+
T Consensus       243 ~~~~----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          243 KPEF----AN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CCCC----TT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCC----Cc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5421    11 12223457889999999999999999999999998875 444445568889999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 004848          582 KNAISKLRAIG  592 (727)
Q Consensus       582 ~~al~~~~~~~  592 (727)
                      ++++.+....+
T Consensus       317 ~~al~~~~~~g  327 (373)
T 1hz4_A          317 LDALKLANRTG  327 (373)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHhcccc
Confidence            99999876543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=5.1e-21  Score=189.11  Aligned_cols=254  Identities=17%  Similarity=0.117  Sum_probs=218.3

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      +..+.++..+|.++...|++++|+.+|++++... ..        ..++..+|.++...|++++|+.+|.+++.+.....
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            3467889999999999999999999999999987 22        25799999999999999999999999998776553


Q ss_pred             -CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          427 -QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       427 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                       ..+....++..+|.++...|++++|+.+|++++.+        .+.        +.++...|++++|+..+++++..  
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence             34445789999999999999999999999999997        343        45677888999999999999887  


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (727)
                             .+....++..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++
T Consensus       135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                   56678899999999999999999999999999986554       4788999999999999999999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004848          586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (727)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (727)
                      ...        +....++..+|.++...|++++|+.+|++++++......  .|....++..++.+
T Consensus       201 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          201 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA  256 (258)
T ss_dssp             HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred             HhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence            862        223578999999999999999999999999999554433  37777777777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.89  E-value=1.6e-22  Score=217.07  Aligned_cols=385  Identities=13%  Similarity=0.087  Sum_probs=272.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCh---hHHHHHHHHhcccchhccCc
Q 004848          225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY---NEAIPVLEQSIEIPVIEEGQ  301 (727)
Q Consensus       225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~  301 (727)
                      ..+|..++..|+ +++|+.+|+++.+.      +.     +.+++.||.+|...|++   ++|+.+|+++++.       
T Consensus         7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------   67 (452)
T 3e4b_A            7 QRLANEALKRGD-TVTAQQNYQQLAEL------GY-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------   67 (452)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHH------TC-----CTGGGTCC--------------------------------
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHC------CC-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence            457888999997 99999999999764      11     34577899999999999   9999999999854       


Q ss_pred             cchHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004848          302 EHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (727)
Q Consensus       302 ~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (727)
                       +    ..+++.||.++...+     ++++|+.+|+++++.          ....+++.||.+|...+...++...++..
T Consensus        68 -~----~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~  132 (452)
T 3e4b_A           68 -S----PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----------GEGNTLIPLAMLYLQYPHSFPNVNAQQQI  132 (452)
T ss_dssp             --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----------TCSSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred             -C----HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence             1    224888999777766     889999999999874          12238899999999888766665555544


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHH
Q 004848          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGF  453 (727)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~  453 (727)
                      ....+...       ..+++.+|.+|...+.+++++............  .++.   +++.+|.+|...|   ++++|+.
T Consensus       133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~  200 (452)
T 3e4b_A          133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK  200 (452)
T ss_dssp             HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence            44443322       246899999999999777766664433332222  2232   8899999999999   9999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHH-H-
Q 004848          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-Y-  527 (727)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~-  527 (727)
                      +|+++.+.        .+..+..++.||.+|...    +++++|+.+|+++.   ..         ...+++.||.+ + 
T Consensus       201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence            99999987        566677789999999765    79999999999987   11         25678899998 4 


Q ss_pred             -HhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848          528 -ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-----NYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (727)
Q Consensus       528 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (727)
                       ...+++++|+.+|+++.+.     +    ...+++++|.+|. .|     ++++|+.+|+++. .       .   ...
T Consensus       261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~  319 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA  319 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred             CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence             5689999999999999854     2    1568889999998 66     9999999999987 1       1   247


Q ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 004848          602 ALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       602 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  673 (727)
                      ++++||.+|..    ..++++|+.+|+++.+.          ....++++||.+|..    ..++.+|..+|+++.+.  
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--  387 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ--  387 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence            89999998887    34999999999999863          224478999999985    45899999999999863  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHhhh
Q 004848          674 EKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al~~~p~  717 (727)
                           .+   ..+...++.+...  .++..+|. ..+++.....+.
T Consensus       388 -----g~---~~a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~~  424 (452)
T 3e4b_A          388 -----DT---PEANDLATQLEAPLTPAQRAEGQ-RLVQQELAARGT  424 (452)
T ss_dssp             -----CC---HHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred             -----CC---HHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhccc
Confidence                 23   3345555655433  34556677 777777666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.88  E-value=3.8e-21  Score=192.76  Aligned_cols=268  Identities=17%  Similarity=0.136  Sum_probs=220.6

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004848          319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM  398 (727)
Q Consensus       319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  398 (727)
                      ...|++++|+.+|++++++..+..+.++|..+.++..+|.++...|++++|+.++++++.+.....+...+..+.++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45789999999999999999999888889999999999999999999999999999999998877666667788899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848          399 GLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (727)
Q Consensus       399 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (727)
                      |.++...|++++|+.+|.+++.+....  .+++....++..+|.+|...|++++|+.++++++.+++...+++++....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999999876554  446888999999999999999999999999999999999888888999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCcc
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (727)
                      +..+|.+|...|++++|+.++++++.+......+...+.....+..++..+...+....+. .+..+...........+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCHH
Confidence            9999999999999999999999999986542212223333445666777666655544443 355555555555445567


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      ...++..+|.+|..+|++++|+.+|++++++
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7788999999999999999999999999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=1.4e-21  Score=187.70  Aligned_cols=197  Identities=19%  Similarity=0.236  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      ..+++.+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++++        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            457889999999999999999999999998        8999999999999999999999999999999999        


Q ss_pred             ChHhHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004848          512 PPEEIASGLTDVSSIYESM-----------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS  580 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  580 (727)
                       .|....++..+|.++...           |++++|+..|++++++.|..       ..++..+|.++...|++++|+..
T Consensus        69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~  140 (217)
T 2pl2_A           69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEAS  140 (217)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHH
Confidence             455578899999999999           99999999999999997655       57889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (727)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (727)
                      |++++++.         ....++..+|.++...|++++|+..|++++++        +|+...++..+|.++...|++++
T Consensus       141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC------
T ss_pred             HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHH
Confidence            99999972         13578899999999999999999999999999        89999999999999999999999


Q ss_pred             HHHHHHHHH
Q 004848          661 AIEILEFVV  669 (727)
Q Consensus       661 A~~~~~~al  669 (727)
                      |+..|+++-
T Consensus       204 A~~~~~~~~  212 (217)
T 2pl2_A          204 AARAAALEH  212 (217)
T ss_dssp             ---------
T ss_pred             HHHHHHHHh
Confidence            999999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.88  E-value=4.5e-22  Score=213.50  Aligned_cols=352  Identities=14%  Similarity=0.061  Sum_probs=250.2

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCC
Q 004848          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL---ENSLMCYTTGLEVQKQVLGET  345 (727)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~  345 (727)
                      ..+|..++..|++++|+.+|+++.+..       ++    .+++.||.+|...|++   ++|+.+|+++++.        
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------~~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------   67 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG-------YS----EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-------CC----TGGGTCC---------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC-------CH----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence            347899999999999999999997642       12    2377899999999999   9999999999854        


Q ss_pred             CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (727)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~  420 (727)
                         ...+++.||.++...+     ++++|+.+|++++...  ..        .+++.||.+|...+...++...+.....
T Consensus        68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~  134 (452)
T 3e4b_A           68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQ  134 (452)
T ss_dssp             ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence               3467889999776665     8899999999998732  11        2488999999988765555444433332


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHH
Q 004848          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG---KLRESKSYC  497 (727)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  497 (727)
                      ....     ....+++.+|.+|...+.++++.............    .+|.   +++.||.+|...|   ++++|+.+|
T Consensus       135 a~~~-----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~  202 (452)
T 3e4b_A          135 WQAA-----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQM  202 (452)
T ss_dssp             HHHH-----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHH
Confidence            2221     22457889999999999777776664433332211    1333   8999999999999   999999999


Q ss_pred             HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-H--HH
Q 004848          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-Y--YM  570 (727)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~--~~  570 (727)
                      +++...      +   +..+..++.+|.+|...    +++++|+.+|+++.   +..       ..+++++|.+ |  ..
T Consensus       203 ~~aa~~------g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~  263 (452)
T 3e4b_A          203 EAGVSR------G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPE  263 (452)
T ss_dssp             HHHHHT------T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGG
T ss_pred             HHHHHC------C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCC
Confidence            999987      2   22355668899999765    79999999999987   433       3678899998 4  46


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004848          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-----SINEAVELFEEARSILEQECGPYHPDTLGVY  645 (727)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (727)
                      .+++++|+.+|+++.+.          ....++++||.+|. .|     ++++|+.+|+++. .          ....++
T Consensus       264 ~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----------g~~~A~  321 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----------REVAAD  321 (452)
T ss_dssp             GCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----------TCHHHH
T ss_pred             CCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----------CCHHHH
Confidence            89999999999999863          13578999999998 66     9999999999987 2          234589


Q ss_pred             HHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHhh
Q 004848          646 SNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       646 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p  716 (727)
                      ++||.+|..    ..++++|+.+|+++.+          .....+.++||.+|..    ..++.+|. .+|+++.+..+
T Consensus       322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~  389 (452)
T 3e4b_A          322 YYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDT  389 (452)
T ss_dssp             HHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCC
Confidence            999999887    4499999999999985          2345688999999985    45899999 99999887543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=4.7e-20  Score=202.98  Aligned_cols=387  Identities=9%  Similarity=-0.024  Sum_probs=274.8

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (727)
                      |....+|..++.. ...|++++|+..|++++...     |...    ..|..++..+...|++++|...|++++..    
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~----   75 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK----   75 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence            4456778888874 78999999999999999986     3333    35899999999999999999999999988    


Q ss_pred             hCCCCchHHHHHHHHHH-HHHHhcCHHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---------cCC
Q 004848          342 LGETDPRVGETCRYLAE-AHVQALQFSEAQK----FCQMALDIHKDNGSPASLEEAADRRLMGLICET---------KGD  407 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~---------~g~  407 (727)
                          .|. ..+|..++. +....|++++|.+    .|++++...+...  ..   ..+|...+.....         .|+
T Consensus        76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~  145 (530)
T 2ooe_A           76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR  145 (530)
T ss_dssp             ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred             ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence                564 457777775 4445688877766    6666665432211  11   2446566665544         789


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCC---CCh
Q 004848          408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGE---NHP  471 (727)
Q Consensus       408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~~  471 (727)
                      ++.|..+|++++..    +.. .....+.......             ...+++..|...+.............   -.|
T Consensus       146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence            99999999998751    111 1122222222211             13456777776666543332222100   011


Q ss_pred             -------hHHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh-------
Q 004848          472 -------AVASVFVRLADMYNRT----GKL----RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-------  529 (727)
Q Consensus       472 -------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-------  529 (727)
                             .....|..........    ++.    ..++..|++++...         |....+|..+|.++..       
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~  291 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAE  291 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhh
Confidence                   1123444433322221    233    47889999999983         4457789999999886       


Q ss_pred             cccHH-------HHHHHHHHHHH-HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848          530 MNELE-------QAIKLLQKALK-IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (727)
Q Consensus       530 ~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (727)
                      .|+++       +|+..|++++. +.+..       ..++..++.++...|++++|...|++++.+    .   +.....
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI----E---DIDPTL  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----S---SSCHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc----c---ccCchH
Confidence            79877       88999998886 44332       578899999999999999999999999985    1   111235


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                      +|..++.++...|++++|+.+|++|++.        .|.....+...+.+ +...|++++|..+|+++++..        
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------  421 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------  421 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------
Confidence            8999999999999999999999999986        44444455555555 446999999999999999874        


Q ss_pred             hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      |+...++..++.++...|+.++|. ..|++++...|.
T Consensus       422 p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~  457 (530)
T 2ooe_A          422 GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSL  457 (530)
T ss_dssp             TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred             CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence            666788999999999999999999 999999987553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.88  E-value=1.3e-20  Score=188.83  Aligned_cols=269  Identities=17%  Similarity=0.221  Sum_probs=222.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004848          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (727)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (727)
                      ....|++++|+.+|+++++++.+..+.++|....++..+|.+|...|++++|+.+|++++.+.+... +.+++....++.
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~   89 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN   89 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence            4567999999999999999999998888899999999999999999999999999999999987643 345677889999


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 004848          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (727)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (727)
                      .+|.+|...|++++|+.+|++++.+.....+.. +....++..+|.+|...|++++|+.+|++++.+.........+...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            999999999999999999999999987654443 4667889999999999999999999999999998888776677788


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          601 VALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      .++..+|.++...|++++|+.+|++++.+..... +..++....++..++..+...+....+.. +..+.... ...+..
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~  247 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWY-KACKVD  247 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHH-HhcCCC
Confidence            9999999999999999999999999999866543 22345555577777777776666555544 44444433 344567


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                      +|....++..||.+|...|++++|. .+|++++++
T Consensus       248 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~  281 (283)
T 3edt_B          248 SPTVNTTLRSLGALYRRQGKLEAAH-TLEDCASRN  281 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence            8999999999999999999999999 999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=1.9e-21  Score=186.75  Aligned_cols=200  Identities=18%  Similarity=0.146  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      |....++..+|.++...|++++|+..|++++.+         .|....++..+|.++...|++++|+..|++++++.|..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            344578899999999999999999999999988         45557889999999999999999999999999997665


Q ss_pred             CCCCccHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYML-----------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA  619 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  619 (727)
                             ..++..+|.++...           |++++|+..|++++++        .+....++..+|.++...|++++|
T Consensus        73 -------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           73 -------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             -------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             -------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHH
Confidence                   57889999999999           9999999999999987        233467899999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (727)
                      +..|++++++        + +...++..+|.+|..+|++++|+..|++++++        +|+...++..+|.++...|+
T Consensus       138 ~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~  200 (217)
T 2pl2_A          138 EASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGK  200 (217)
T ss_dssp             HHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccC
Confidence            9999999999        6 66779999999999999999999999999987        68888999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 004848          700 VRSRKAQSLETLL  712 (727)
Q Consensus       700 ~~~A~~~~l~~al  712 (727)
                      +++|+ ..|+++-
T Consensus       201 ~~~A~-~~~~~~~  212 (217)
T 2pl2_A          201 AEEAA-RAAALEH  212 (217)
T ss_dssp             -------------
T ss_pred             HHHHH-HHHHHHh
Confidence            99999 8888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.86  E-value=4.4e-20  Score=185.47  Aligned_cols=278  Identities=12%  Similarity=0.040  Sum_probs=217.4

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004848          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (727)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (727)
                      ...+..|+|..|+..+++.....|..       .......++.+|...|+++.|+..++.         ..+....++..
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~~   70 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVRM   70 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHHH
Confidence            34667899999999988765544332       124567889999999999999986643         23446778889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004848          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (727)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (727)
                      ++..+...+++++|+..+++++..      ..+|....+++.+|.++...|++++|+.+|++              +...
T Consensus        71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------------~~~~  130 (291)
T 3mkr_A           71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------------GDSL  130 (291)
T ss_dssp             HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------------CCSH
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------------CCCH
Confidence            999999999999999999988764      01477788999999999999999999999987              1125


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (727)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (727)
                      .++..+|.++..+|++++|+..|+++++..+..     ........+..++...|++++|+.+|+++++..        +
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------p  197 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------S  197 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------C
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------C
Confidence            678899999999999999999999999885332     111111112233344589999999999999861        1


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHhc
Q 004848          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEILEFVVGIREEKL  676 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~  676 (727)
                      ....+++.+|.++...|++++|+.+|++++..        +|+...++.++|.++...|++.+ +..++++++++     
T Consensus       198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-----  264 (291)
T 3mkr_A          198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-----  264 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence            23678999999999999999999999999999        89999999999999999999986 56899999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848          677 GTANPDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                         +|+.+.+.    .+..+.+.++++.
T Consensus       265 ---~P~~~~~~----d~~~~~~~fd~~~  285 (291)
T 3mkr_A          265 ---HRSHPFIK----EYRAKENDFDRLV  285 (291)
T ss_dssp             ---CTTCHHHH----HHHHHHHHHHHHH
T ss_pred             ---CCCChHHH----HHHHHHHHHHHHH
Confidence               34444332    3455566666666

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=2e-19  Score=180.66  Aligned_cols=260  Identities=13%  Similarity=0.067  Sum_probs=209.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004848          400 LICETKGDHEAALEHLVLASMTMIANDQDAEV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV  478 (727)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  478 (727)
                      ...+..|+|..|+..+++..      ...|.. ......++.+|..+|+++.|+..++..           .+....++.
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a~~   69 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVK------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQAVR   69 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSC------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHHHH
Confidence            34567899999999887542      234444 457788899999999999999866441           344678899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHH
Q 004848          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (727)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (727)
                      .++..+...+++++|+..+++++...       ..|....++..+|.++...|++++|+.+|++     +       ...
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~-------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~-------~~~  130 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRS-------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G-------DSL  130 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSC-------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C-------CSH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcc-------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C-------CCH
Confidence            99999999999999999999987641       0233466799999999999999999999987     1       124


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      .++..+|.+|..+|++++|+..|++++...     .... .......+..++...|++++|+.+|+++++.        +
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~  196 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------C  196 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------C
Confidence            678899999999999999999999998862     1111 1111111223344568999999999999998        7


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      |....+++.+|.++..+|++++|+..|++++.+        +|+++.++.++|.++...|+..++...+++++++++|+
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            888899999999999999999999999999987        68889999999999999999987532899999999997

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=4.8e-18  Score=192.61  Aligned_cols=366  Identities=14%  Similarity=0.094  Sum_probs=229.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-------------HH---------HHHHHHHHcCChhH
Q 004848          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC-------------LH---------VIAAIYCSLGQYNE  283 (727)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~-------------~~---------~la~~~~~~g~~~~  283 (727)
                      ..++.|...|. +.+|++.|++++.- .......++.....+             +.         .+|.++...|.|++
T Consensus       990 ~~vKaf~~agl-p~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A          990 VTVKAFMTADL-PNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred             HHHHHHHhCCC-HHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence            35677888886 99999999999822 110001111111100             11         13666666666666


Q ss_pred             HHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh
Q 004848          284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA  363 (727)
Q Consensus       284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  363 (727)
                      |..+|+++-..                ...+...+...+++++|+++++++             ....+|+.+|.++...
T Consensus      1068 Af~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A         1068 AFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred             HHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHHHHhC
Confidence            66666665311                011222233555555555555532             2356677777777777


Q ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004848          364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL  443 (727)
Q Consensus       364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  443 (727)
                      |++++|+..|.++       .+      ...+..++.++...|+|++|+++|..|.......       .+...+|.+|.
T Consensus      1119 G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-------~Idt~LafaYA 1178 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------YVETELIFALA 1178 (1630)
T ss_pred             CCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-------cccHHHHHHHH
Confidence            7777777777665       11      1346667777777777777777777665432110       11123667777


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 004848          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (727)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (727)
                      +++++++ ++.|   +.         .+.. ..+..+|..+...|+|++|..+|.++                 ..|..+
T Consensus      1179 Kl~rlee-le~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~ny~rL 1227 (1630)
T 1xi4_A         1179 KTNRLAE-LEEF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFGRL 1227 (1630)
T ss_pred             hhcCHHH-HHHH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hHHHHH
Confidence            7777664 3333   11         1222 34556777777777777777777764                 135667


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHH
Q 004848          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (727)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (727)
                      +.+|..+|++++|++.+++|...            .+|...+.++...|+|..|..+... +..           .+..+
T Consensus      1228 A~tLvkLge~q~AIEaarKA~n~------------~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~~deL 1283 (1630)
T 1xi4_A         1228 ASTLVHLGEYQAAVDGARKANST------------RTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------HADEL 1283 (1630)
T ss_pred             HHHHHHhCCHHHHHHHHHHhCCH------------HHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------CHHHH
Confidence            77777777777777777777221            4666777777777777777776653 211           23456


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      ..++..|...|.+++|+.+++.++.+        ++.....+..||.+|.+  -++..+++++|...+.+-.-+.   --
T Consensus      1284 eeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r---~~ 1352 (1630)
T 1xi4_A         1284 EELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR---AA 1352 (1630)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH---HH
Confidence            67888899999999999999999988        67777788788888765  4567778888877765411000   01


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLE  709 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~  709 (727)
                      +.+..|..+..+|.+-|+++.|+ ..+-
T Consensus      1353 e~~~lW~elv~LY~~~~e~dnA~-~tm~ 1379 (1630)
T 1xi4_A         1353 EQAHLWAELVFLYDKYEEYDNAI-ITMM 1379 (1630)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHH-HHHH
Confidence            56778889999999999999999 5443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=3.3e-19  Score=179.65  Aligned_cols=250  Identities=11%  Similarity=0.073  Sum_probs=199.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004848          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (727)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (727)
                      ++++|+.+|.++                      |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus        32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~   89 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS   89 (292)
T ss_dssp             HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            488888888776                      4467788999999999999999988888778889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 004848          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (727)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (727)
                      +|++++|+.+|++++.+....+  +....+.++.++|.+|... |++++|+.+|++++.+....   ........++..+
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~~~~~~~~~~~l  164 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKC  164 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHH
Confidence            9999999999999999987754  2344578999999999996 99999999999999997652   2234456789999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHH
Q 004848          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (727)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (727)
                      |.++..+|++++|+.+|++++.+.+...........++.++|.++..+|++++|+.+|++++.+.+......   ....+
T Consensus       165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---~~~~l  241 (292)
T 1qqe_A          165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFL  241 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH---HHHHH
Confidence            999999999999999999999987655322234556789999999999999999999999998755433221   23456


Q ss_pred             HHHHHHHH--HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004848          604 NQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (727)
Q Consensus       604 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  652 (727)
                      ..++..+.  ..+++++|+..|.+++.+        +|....++..+-..+
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence            66676665  456799999999888776        777766665555444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=8.8e-19  Score=174.93  Aligned_cols=226  Identities=13%  Similarity=0.163  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhc
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  506 (727)
                      .+.+++.+|.++...|++++|+.+|+++++.          ....++..+|.+|..    .+++++|+.+|+++++.   
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---   71 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   71 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence            3456777888888888888888888887762          224677788888888    88888888888888766   


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSY  578 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  578 (727)
                         +     ...++..+|.+|..    .+++++|+.+|++++...         ...++..+|.+|..    .+++++|+
T Consensus        72 ---~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A           72 ---N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             ---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ---C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHH
Confidence               1     24567788888888    888888888888887651         14567788888888    88888888


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (727)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (727)
                      .+|+++++.       .   ...++..+|.+|..    .+++++|+.+|+++++.        .  ...+++.+|.+|..
T Consensus       135 ~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          135 EYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------K--DSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHHc
Confidence            888888763       1   23567778888887    78888888888888765        1  23577888888888


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHhhh
Q 004848          655 ----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       655 ----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~  717 (727)
                          .+++++|+.+|+++++.        .+  ..+++.||.+|..    .+++++|+ .+|++++++.|.
T Consensus       195 g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~~  254 (273)
T 1ouv_A          195 GEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAK  254 (273)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCH
T ss_pred             CCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCCH
Confidence                88888888888888764        12  5677888888888    88888888 888888888776

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=8.8e-19  Score=174.94  Aligned_cols=226  Identities=15%  Similarity=0.165  Sum_probs=197.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCChhHHHHHHHHhc
Q 004848          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLEQSI  292 (727)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al  292 (727)
                      +|..+.+++.+|..++..|+ +++|+.+|+++++.           ....++..+|.+|..    .+++++|+.+|++++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~-----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~   69 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACDL-----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   69 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence            46778899999999999997 99999999999871           124678999999999    999999999999998


Q ss_pred             ccchhccCccchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hc
Q 004848          293 EIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----AL  364 (727)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g  364 (727)
                      +..       +    ..+++.+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|..    .+
T Consensus        70 ~~~-------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           70 DLN-------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             HTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred             HCC-------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence            762       2    3358899999999    99999999999999876          256889999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004848          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (727)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (727)
                      ++++|+.+|+++++...          ..++..+|.+|..    .+++++|+.+|++++..        ....++..+|.
T Consensus       129 ~~~~A~~~~~~a~~~~~----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~  190 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLND----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN  190 (273)
T ss_dssp             CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence            99999999999998531          3568999999999    99999999999999753        12467899999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004848          441 TYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRI  503 (727)
Q Consensus       441 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  503 (727)
                      +|..    .+++++|+.+|+++++.        .+  ..++..+|.+|..    .+++++|+.+|++++++
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            9999    99999999999999986        33  6788999999999    99999999999999998

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=9.6e-20  Score=178.21  Aligned_cols=222  Identities=16%  Similarity=0.190  Sum_probs=173.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      ...+..++.+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...    
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----   87 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELD----   87 (243)
T ss_dssp             ----------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence            345677889999999999999999999999986        67778999999999999999999999999999982    


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                           +....++..+|.++...|++++|+.+++++++..+..       ..++..+|.++...|++++|+.++++++...
T Consensus        88 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A           88 -----SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN  155 (243)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             -----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence                 3346789999999999999999999999999986543       4678899999999999999999999999862


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                              +....++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|+++
T Consensus       156 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          156 --------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             --------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             --------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                    123568899999999999999999999999998        7788889999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          669 VGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                      +++        +|+...++..++.+....|
T Consensus       220 ~~~--------~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          220 IDI--------QPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHH--------CTTCHHHHHHHTC------
T ss_pred             Hcc--------CcchHHHHHHHHHHHhhcc
Confidence            987        5777778877777665444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=4.7e-19  Score=178.57  Aligned_cols=250  Identities=14%  Similarity=0.102  Sum_probs=195.0

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (727)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (727)
                      ++++|+.+|.++                    |.+|...|++++|+.+|++++.+..+..  +.+..+.++.++|.+|..
T Consensus        32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~   89 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKS   89 (292)
T ss_dssp             HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence            488888888766                    5578889999999999999999987764  245568899999999999


Q ss_pred             cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004848          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (727)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (727)
                      +|++++|+.+|++++.+....   .+....+.++.++|.+|... |++++|+.+|++++.+.+.. +.......++.++|
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg  165 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHR---GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA  165 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence            999999999999999998763   23455678999999999996 99999999999999999865 44444567889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004848          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (727)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (727)
                      .+|..+|++++|+.+|++++.+....... ......++..+|.++..+|++++|+.+|++++.+......   ......+
T Consensus       166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l  241 (292)
T 1qqe_A          166 DLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFL  241 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHH
Confidence            99999999999999999999864322111 1123457899999999999999999999999987222110   1112245


Q ss_pred             HHHHHHHH--HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          646 SNLAGTYD--AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       646 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      ..++..+.  ..+++++|+..|++++.+        +|.....+..+-..+
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence            56667665  456788999888887643        677777666665554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=3.9e-17  Score=185.23  Aligned_cols=353  Identities=15%  Similarity=0.110  Sum_probs=262.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHH
Q 004848          227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA  306 (727)
Q Consensus       227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  306 (727)
                      .|..+...|. +++|..+|+++...             .   ..+...+...+++++|+++++++-.             
T Consensus      1055 IA~Iai~lgl-yEEAf~IYkKa~~~-------------~---~A~~VLie~i~nldrAiE~Aervn~------------- 1104 (1630)
T 1xi4_A         1055 IANIAISNEL-FEEAFAIFRKFDVN-------------T---SAVQVLIEHIGNLDRAYEFAERCNE------------- 1104 (1630)
T ss_pred             HHHHHHhCCC-HHHHHHHHHHcCCH-------------H---HHHHHHHHHHhhHHHHHHHHHhcCC-------------
Confidence            3777788886 88888888876311             1   1123334488999999999997632             


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004848          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (727)
Q Consensus       307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (727)
                       ..+|+.+|.++...|++++|+..|.++             +....|..+|.++.+.|+|++|+++|..+.+..+...  
T Consensus      1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-- 1168 (1630)
T 1xi4_A         1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-- 1168 (1630)
T ss_pred             -HHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--
Confidence             235999999999999999999999774             3457788999999999999999999999988764321  


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004848          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (727)
Q Consensus       387 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (727)
                             +...+|.+|.+++++++ ++.|..          .+.. ..+..+|..+...|+|++|..+|.++        
T Consensus      1169 -------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A         1169 -------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred             -------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence                   13358999999999885 444421          2222 35567999999999999999999885        


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004848          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (727)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (727)
                              ..|..+|.+|.++|++++|++.+.+|..              ..+|...+.++...|+|..|..+... +..
T Consensus      1222 --------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv 1278 (1630)
T 1xi4_A         1222 --------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV 1278 (1630)
T ss_pred             --------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc
Confidence                    3678899999999999999999998832              35788999999999999999988764 322


Q ss_pred             HHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--hCCHHHHHHHHH
Q 004848          547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFE  624 (727)
Q Consensus       547 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~  624 (727)
                      .          +..+..++..|...|.|++|+.+++.++.+-        ......+..+|.+|.+  .++..+++++|.
T Consensus      1279 ~----------~deLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1279 H----------ADELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            2          2345678999999999999999999998762        2245577777777765  457788888888


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI------REEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                      ..+.+-+-+.   --..+..|..+..+|.+-|+++.|+..+-.....      +...+  ..+.+++.++.....|...+
T Consensus      1341 ~rini~k~~r---~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1341 SRVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred             HhcccchHhH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHHhhC
Confidence            8776511000   0145667889999999999999999544443211      11221  24566778888888887555

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=6.7e-19  Score=164.25  Aligned_cols=169  Identities=18%  Similarity=0.233  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (727)
                      +.+|+.+|.+|..+|++++|+.+|++++++.|..       ..++..+|.+|...|++++|+..+.+++...        
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--------   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLD--------   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------
Confidence            5689999999999999999999999999987655       5789999999999999999999999998762        


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      +....++..+|.++...++++.|...+.+++.+        .|....++..+|.+|..+|++++|+..|++++++     
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----  136 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----  136 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence            224578889999999999999999999999998        8888899999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                         +|....++..+|.+|..+|++++|+ ..|+++++++|+
T Consensus       137 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  173 (184)
T 3vtx_A          137 ---KPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEEK  173 (184)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTHH
T ss_pred             ---cchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCcc
Confidence               6888999999999999999999999 999999999998

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=2e-19  Score=179.56  Aligned_cols=258  Identities=14%  Similarity=0.018  Sum_probs=203.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004848          399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV  478 (727)
Q Consensus       399 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  478 (727)
                      +......|++++|+..|++++...  ...++....++..+|.++...|++++|+.+|++++.+        .|....++.
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~   81 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN   81 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence            334455688999999999987531  1235678899999999999999999999999999998        677889999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHH
Q 004848          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (727)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (727)
                      .+|.+|...|++++|+.+|++++.+.         |....++..+|.++...|++++|+.+|++++.+.+..       .
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~  145 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELD---------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P  145 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcC---------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence            99999999999999999999999983         3335789999999999999999999999999986544       1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      .... ...++...|++++|+.++.+++....    ...     ....++.++...++.++|+..+++++......    .
T Consensus       146 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~  211 (275)
T 1xnf_A          146 FRSL-WLYLAEQKLDEKQAKEVLKQHFEKSD----KEQ-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A  211 (275)
T ss_dssp             HHHH-HHHHHHHHHCHHHHHHHHHHHHHHSC----CCS-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred             HHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC----cch-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence            2222 23344677999999999999887521    111     12347778888899999999999988763321    2


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  708 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  708 (727)
                      |....++..+|.+|...|++++|+.+|++++.+        +|....   ..+.++...|++++|+ ..|
T Consensus       212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~---~~~~~~~~l~~~~~a~-~~~  269 (275)
T 1xnf_A          212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFV---EHRYALLELSLLGQDQ-DDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTCH---HHHHHHHHHHHHHHC-----
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhHH---HHHHHHHHHHHHHhhH-HHH
Confidence            344679999999999999999999999999975        354322   3377888999999999 766

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=1.7e-18  Score=170.50  Aligned_cols=209  Identities=15%  Similarity=0.107  Sum_probs=186.1

Q ss_pred             ChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          470 HPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       470 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                      +|.. +.++..+|.++...|++++|+.+|++++..         .+....++..+|.++...|++++|+.+|++++...+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  102 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI---------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS  102 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            4554 889999999999999999999999999998         233467899999999999999999999999998855


Q ss_pred             hCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (727)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (727)
                      ..       ..++..+|.+|...|++++|+.+|++++.      ....+....++..+|.++...|++++|+.+|++++.
T Consensus       103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            43       46888999999999999999999999886      111234578899999999999999999999999999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004848          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  708 (727)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  708 (727)
                      .        .|....++..+|.++...|++++|+.++++++..        .|....++..++.++...|++++|. ..+
T Consensus       170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~  232 (252)
T 2ho1_A          170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG  232 (252)
T ss_dssp             H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence            8        7777889999999999999999999999999864        5667788999999999999999999 999


Q ss_pred             HHHHHHhhh
Q 004848          709 ETLLDANSR  717 (727)
Q Consensus       709 ~~al~~~p~  717 (727)
                      +++++.+|+
T Consensus       233 ~~~~~~~p~  241 (252)
T 2ho1_A          233 LQLKRLYPG  241 (252)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHHCCC
Confidence            999999987

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=5.4e-19  Score=176.41  Aligned_cols=259  Identities=13%  Similarity=0.039  Sum_probs=203.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (727)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (727)
                      ++..+...|++++|+..|++++...     +..+.....+++.+|.++...|++++|+.+|++++..        +|...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~   77 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP   77 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred             eeeccCccchHHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence            3444556789999999999999873     2223345667999999999999999999999999998        78888


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (727)
                      .++..+|.++...|++++|+.+|++++.+.+...        .++..+|.++...|++++|+.+|++++...   +..+ 
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~-  145 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--------YAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP-  145 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh-
Confidence            9999999999999999999999999999876543        579999999999999999999999998642   2222 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (727)
                        .....++ ++...|++++|+..+.+++..        .+..... ..++.++...+++++|+..+++++.....    
T Consensus       146 --~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----  209 (275)
T 1xnf_A          146 --FRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTS----  209 (275)
T ss_dssp             --HHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHH----
T ss_pred             --HHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccccc----
Confidence              2223333 446679999999999999886        2332223 34788888899999999999988766322    


Q ss_pred             CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004848          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (727)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (727)
                       ..+....++..+|.+|...|++++|+.+|++++.+.+..          +...+.++...|++++|+..+
T Consensus       210 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          210 -LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----------FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----------CHHHHHHHHHHHHHHHC----
T ss_pred             -ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHhhHHHH
Confidence             123447889999999999999999999999999875432          123477888889999988876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=3.4e-18  Score=168.29  Aligned_cols=206  Identities=12%  Similarity=0.050  Sum_probs=180.7

Q ss_pred             Chh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          428 DAE-VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       428 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      .+. .+.++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...  
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--  101 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--  101 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--
Confidence            344 3788999999999999999999999999988        67778999999999999999999999999999982  


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                             +....++..+|.++...|++++|+.+|++++.     .+..+....++..+|.++...|++++|+.+|++++.
T Consensus       102 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          102 -------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                   33467889999999999999999999999987     123344567889999999999999999999999988


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                      ..        +....++..+|.++...|++++|+.+|++++..        .|....++..++.++...|++++|..+++
T Consensus       170 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  233 (252)
T 2ho1_A          170 LN--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGL  233 (252)
T ss_dssp             HC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            62        123568899999999999999999999999887        67778889999999999999999999999


Q ss_pred             HHHHH
Q 004848          667 FVVGI  671 (727)
Q Consensus       667 ~al~~  671 (727)
                      +++++
T Consensus       234 ~~~~~  238 (252)
T 2ho1_A          234 QLKRL  238 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=4.5e-18  Score=163.95  Aligned_cols=209  Identities=18%  Similarity=0.134  Sum_probs=185.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .|....++..+|.++...|++++|+.+|++++...         +....++..+|.++...|++++|+.++++++...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   74 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD   74 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            67888999999999999999999999999999983         334678999999999999999999999999988654


Q ss_pred             CCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (727)
                      .       ..++..+|.++... |++++|+.+|++++.     .+ ..+....++..+|.++...|++++|+.+|+++++
T Consensus        75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA-----DP-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-----ST-TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-----Cc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3       46788999999999 999999999999987     11 1233567899999999999999999999999999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHH
Q 004848          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQS  707 (727)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~  707 (727)
                      .        .|....++..+|.++...|++++|+.++++++.+.        | .....+..++.++...|+.++|. .+
T Consensus       142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~  204 (225)
T 2vq2_A          142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAY-EY  204 (225)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence            8        77778899999999999999999999999999873        5 55667888999999999999999 99


Q ss_pred             HHHHHHHhhh
Q 004848          708 LETLLDANSR  717 (727)
Q Consensus       708 l~~al~~~p~  717 (727)
                      ++.+++.+|+
T Consensus       205 ~~~~~~~~p~  214 (225)
T 2vq2_A          205 EAQLQANFPY  214 (225)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHhCCC
Confidence            9999998886

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=1.2e-17  Score=160.96  Aligned_cols=207  Identities=14%  Similarity=0.107  Sum_probs=180.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      ..+....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--   72 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--   72 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence            35677888999999999999999999999999998        67778899999999999999999999999999983  


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (727)
                             +....++..+|.++... |++++|+.++++++. .    +..+....++..+|.++...|++++|+.+|++++
T Consensus        73 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  140 (225)
T 2vq2_A           73 -------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL  140 (225)
T ss_dssp             -------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   33466889999999999 999999999999987 1    2233456788999999999999999999999998


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHH
Q 004848          586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEI  664 (727)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~  664 (727)
                      ...        +....++..+|.++...|++++|+.+|++++..        .| ....++..++.++...|++++|..+
T Consensus       141 ~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~  204 (225)
T 2vq2_A          141 AAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEY  204 (225)
T ss_dssp             HHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence            862        123578899999999999999999999999998        66 6677888999999999999999999


Q ss_pred             HHHHHHH
Q 004848          665 LEFVVGI  671 (727)
Q Consensus       665 ~~~al~~  671 (727)
                      ++.++..
T Consensus       205 ~~~~~~~  211 (225)
T 2vq2_A          205 EAQLQAN  211 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.81  E-value=6.3e-19  Score=172.38  Aligned_cols=205  Identities=17%  Similarity=0.157  Sum_probs=165.5

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      ..+..++.+|.++...|++++|+.+|++++..         .+....++..+|.++...|++++|+.++++++...+.. 
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-   90 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-   90 (243)
T ss_dssp             ---------------------CCTTHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-
Confidence            45678899999999999999999999999886         23346789999999999999999999999999885543 


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (727)
                            ..++..+|.++...|++++|+.+|++++....        ....++..+|.++...|++++|+.+|++++..  
T Consensus        91 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  154 (243)
T 2q7f_A           91 ------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--  154 (243)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             ------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence                  57888999999999999999999999998621        12468899999999999999999999999998  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (727)
                            .|....++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|. ..|+++
T Consensus       155 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~  219 (243)
T 2q7f_A          155 ------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKAL-EMLDKA  219 (243)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHH-HHHHHH
T ss_pred             ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence                  7878889999999999999999999999999986        5677789999999999999999999 999999


Q ss_pred             HHHhhh
Q 004848          712 LDANSR  717 (727)
Q Consensus       712 l~~~p~  717 (727)
                      ++++|+
T Consensus       220 ~~~~p~  225 (243)
T 2q7f_A          220 IDIQPD  225 (243)
T ss_dssp             HHHCTT
T ss_pred             HccCcc
Confidence            999987

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.81  E-value=6.4e-19  Score=190.18  Aligned_cols=217  Identities=16%  Similarity=0.151  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc
Q 004848          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL-RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (727)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (727)
                      ...+++++..+..... ..+..+.+++.+|.++...|++ ++|+.+|++++++         .|....++..+|.+|...
T Consensus        81 ~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~  150 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------EPELVEAWNQLGEVYWKK  150 (474)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHc
Confidence            3334444444433322 2567889999999999999999 9999999999999         344577899999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (727)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (727)
                      |++++|+.+|++++++.+.        ..++..+|.+|...         |++++|+.+|++++++.        +....
T Consensus       151 g~~~~A~~~~~~al~~~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~  214 (474)
T 4abn_A          151 GDVTSAHTCFSGALTHCKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDGR  214 (474)
T ss_dssp             TCHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHH
T ss_pred             CCHHHHHHHHHHHHhhCCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCHH
Confidence            9999999999999987422        37889999999999         99999999999999872        23467


Q ss_pred             HHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          602 ALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHP---DTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       602 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      +|..+|.+|...        |++++|+.+|++++++        +|   ....+++++|.+|..+|++++|+.+|+++++
T Consensus       215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  286 (474)
T 4abn_A          215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA  286 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            899999999999        9999999999999999        78   8899999999999999999999999999998


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004848          671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (727)
Q Consensus       671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (727)
                      +        +|+...++..++.++...|++++|+ ..+.++
T Consensus       287 l--------~p~~~~a~~~l~~~~~~lg~~~eAi-~~~~~~  318 (474)
T 4abn_A          287 L--------DPAWPEPQQREQQLLEFLSRLTSLL-ESKGKT  318 (474)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred             h--------CCCCHHHHHHHHHHHHHHHHHHHHH-HHhccc
Confidence            7        6888899999999999999999999 766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.81  E-value=3.3e-18  Score=159.47  Aligned_cols=167  Identities=17%  Similarity=0.294  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      .+.+|+.+|.+|...|++++|+.+|++++++         .|....++..+|.+|...|++++|+..+.+++...+..  
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence            4678999999999999999999999999999         45557889999999999999999999999999876554  


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                           ..++..+|.++...++++.|...+.+++.+.        +....++..+|.++...|++++|+.+|++++++   
T Consensus        73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---  136 (184)
T 3vtx_A           73 -----AEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---  136 (184)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence                 5678899999999999999999999998862        224578899999999999999999999999999   


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                           +|....++.++|.+|..+|++++|+.+|++++++
T Consensus       137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                 8999999999999999999999999999999986

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.80  E-value=1.7e-17  Score=168.41  Aligned_cols=245  Identities=15%  Similarity=0.165  Sum_probs=193.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          405 KGDHEAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (727)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (727)
                      .|++++|.++++++......     .++.......+...|.+|...|++++|+.+|.+++.+..+..  +....+.++..
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~   81 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ   81 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence            46677788888777665442     223334455666678899999999999999999999988764  34566889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004848          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (727)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (727)
                      +|.+|..+|++++|+.+|++++.++...   .+....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~  156 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE  156 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence            9999999999999999999999998764   2345667899999999999 99999999999999999875 55555678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (727)
                      ++.++|.+|..+|++++|+.+|++++.+.+....  ......++..+|.++..+|++++|+.+|++++ +.... .  ..
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~-~--~~  230 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF-S--GS  230 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS-T--TS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC-C--CC
Confidence            8999999999999999999999999999877543  23445688999999999999999999999999 61110 0  12


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHH
Q 004848          640 DTLGVYSNLAGTYDAIGRLDDAIE  663 (727)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~~A~~  663 (727)
                      .....+..++..+ ..|+.+.+..
T Consensus       231 ~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          231 EDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhcCHHHHHH
Confidence            2334556666665 5677665555

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=1.2e-18  Score=187.94  Aligned_cols=204  Identities=15%  Similarity=0.135  Sum_probs=183.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          427 QDAEVASVDCSIGDTYLSLSRY-DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      ..+..+.+++.+|.++...|++ ++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++++  
T Consensus        97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--  166 (474)
T 4abn_A           97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--  166 (474)
T ss_dssp             TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--
T ss_pred             cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence            4566788999999999999999 9999999999998        7888999999999999999999999999999988  


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc-----
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML-----  571 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-----  571 (727)
                             .|. ..++..+|.++...         |++++|+.+|++++++.+..       ..++..+|.+|...     
T Consensus       167 -------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          167 -------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             -------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHTT
T ss_pred             -------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhhc
Confidence                   223 47899999999999         99999999999999987655       57899999999999     


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004848          572 ---GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (727)
Q Consensus       572 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  648 (727)
                         |++++|+.+|++++.+.+.     ......++.++|.+|...|++++|+.+|++++++        +|+...++..+
T Consensus       232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l  298 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQRE  298 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence               9999999999999997210     0145789999999999999999999999999999        88889999999


Q ss_pred             HHHHHHcCChHHHHHHHHHH
Q 004848          649 AGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       649 a~~~~~~g~~~~A~~~~~~a  668 (727)
                      +.++..+|++++|+..+.+.
T Consensus       299 ~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          299 QQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            99999999999999877654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.80  E-value=1.6e-18  Score=194.18  Aligned_cols=176  Identities=21%  Similarity=0.313  Sum_probs=163.7

Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      .|..+.++++||.+|..+|++++|+.+|++++++.++.       ..+++++|.+|..+|++++|+.+|++++++     
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----   72 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI-----   72 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            56778999999999999999999999999999997655       678999999999999999999999999997     


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                         .+..+.+++++|.++..+|++++|+++|++|+++        +|+...++.+||.+|..+|++++|+.+|++++++ 
T Consensus        73 ---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-  140 (723)
T 4gyw_A           73 ---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-  140 (723)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence               2335789999999999999999999999999999        8999999999999999999999999999999998 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCC
Q 004848          673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNN  720 (727)
Q Consensus       673 ~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~  720 (727)
                             +|+...++.+||.+|..+|++++|. +.+++++++.|+ +..
T Consensus       141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~~~~~  181 (723)
T 4gyw_A          141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLEK  181 (723)
T ss_dssp             -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHHHHT
T ss_pred             -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChhHHhh
Confidence                   6888999999999999999999999 999999999998 443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.79  E-value=2e-17  Score=167.99  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=198.3

Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848          362 QALQFSEAQKFCQMALDIHKDNG---SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (727)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (727)
                      ..|++++|..+++++.+..+...   .......+..+...|.+|...|++++|+.+|.+++.+....++....+.++..+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35678888888888887765321   122233344566678899999999999999999999998888888889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      |.+|..+|++++|+.+|++++.++....  +....+.++.++|.+|.. |++++|+.+|++++.+....   .+......
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~~~~~~~  156 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ERLRQAAE  156 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CChhHHHH
Confidence            9999999999999999999999987654  234567899999999999 99999999999999998763   23455678


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (727)
                      ++.++|.+|..+|++++|+.+|++++.+.+.. +........+..+|.++..+|++++|+.+|++++ +.+....   ..
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~---~~  231 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG---SE  231 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT---SH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC---CH
Confidence            99999999999999999999999999999876 3344556688899999999999999999999998 5333221   22


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHH
Q 004848          599 FGVALNQMGLACVQRYSINEAVE  621 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~  621 (727)
                      ....+..++..+ ..|+.+.+..
T Consensus       232 e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          232 DCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHH
Confidence            344566666655 5677655544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=7.5e-18  Score=188.66  Aligned_cols=174  Identities=21%  Similarity=0.294  Sum_probs=161.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .|..+.++.+||.+|..+|++++|+.+|++++++         .|....++.++|.+|..+|++++|+.+|++++++.++
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~   75 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT   75 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            6889999999999999999999999999999999         4556789999999999999999999999999999766


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      .       +.+++++|.+|..+|++++|+.+|++++++        .+....++.++|.+|..+|++++|+.+|++|+++
T Consensus        76 ~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           76 F-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5       688999999999999999999999999987        2335789999999999999999999999999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                              +|+...++.+||.+|..+|++++|.+.|++++++....
T Consensus       141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence                    89999999999999999999999999999999987543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.76  E-value=9.5e-17  Score=158.90  Aligned_cols=224  Identities=15%  Similarity=0.147  Sum_probs=180.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      .+..+..++.+|..++..|++++|+..|++++..     .++++....+++.+|.+|...|++++|+..|++++..... 
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-   84 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-   84 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence            4555678899999999999999999999999987     2233444899999999999999999999999999999432 


Q ss_pred             CCCCChHhHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          508 VPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (727)
                           .+....+++.+|.++..        .|++++|+..|++++...+....       +.              .+..
T Consensus        85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~--------------~a~~  138 (261)
T 3qky_A           85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-------VD--------------DATQ  138 (261)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-------HH--------------HHHH
T ss_pred             -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-------HH--------------HHHH
Confidence                 44567889999999999        99999999999999998765521       11              1111


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----
Q 004848          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI----  655 (727)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----  655 (727)
                      .+.....           .....+..+|.+|...|++++|+..|+++++.     .|+++....+++.+|.+|..+    
T Consensus       139 ~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~  202 (261)
T 3qky_A          139 KIRELRA-----------KLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS  202 (261)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence            1111111           12345788999999999999999999999998     222344788999999999987    


Q ss_pred             ------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848          656 ------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       656 ------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                            |++++|+..|+++++..     |+++....+...++.++...|+++++.
T Consensus       203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                  89999999999999874     677888889999999999888887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=1.9e-17  Score=160.30  Aligned_cols=188  Identities=16%  Similarity=0.153  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      ..++.+|.++...|++++|+.+|++++.+        .| ....+++.+|.++...|++++|+.+|++++..        
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------   71 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------   71 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence            67889999999999999999999999998        44 55678888999999999999999999999987        


Q ss_pred             ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (727)
                       .|....++..+|.+|..+|++++|+.+|++++.+.+........++.++..+|.++...|++++|+.+|++++++    
T Consensus        72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----  146 (228)
T 4i17_A           72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----  146 (228)
T ss_dssp             -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence             445678899999999999999999999999999876542222234567999999999999999999999999875    


Q ss_pred             CCCCchh--HHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCccHH
Q 004848          592 GERKSAF--FGVALNQMGLACVQRYSI---------------------------NEAVELFEEARSILEQECGPYHPDTL  642 (727)
Q Consensus       592 ~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~  642 (727)
                          .+.  ...++..+|.++...|+.                           ++|+.+|++++++        +|+..
T Consensus       147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~  214 (228)
T 4i17_A          147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT  214 (228)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence                344  578899999999998888                           8999999999998        78877


Q ss_pred             HHHHHHHHHHH
Q 004848          643 GVYSNLAGTYD  653 (727)
Q Consensus       643 ~~~~~la~~~~  653 (727)
                      .+...++.+..
T Consensus       215 ~~~~~l~~i~~  225 (228)
T 4i17_A          215 EIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            78777777653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=2e-16  Score=160.66  Aligned_cols=224  Identities=14%  Similarity=0.085  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-HHhcCCCCCCh
Q 004848          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-------TGKL-------RESKSYCENALR-IYEKPVPGVPP  513 (727)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~  513 (727)
                      ++|+..|++++..        .|....+|+.+|.++..       .|++       ++|+..|++++. +         .
T Consensus        33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------~   95 (308)
T 2ond_A           33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------L   95 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---------T
T ss_pred             HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---------C
Confidence            7899999999998        68889999999999874       5886       899999999998 5         3


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      |....+|..+|.++...|++++|+..|++++++.+..+      ..+|..+|.++...|++++|+..|+++++...    
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----  165 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----  165 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----
Confidence            44567899999999999999999999999998644321      12788999999999999999999999987421    


Q ss_pred             CCchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          594 RKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      .    ...++...+.+... .|++++|+.+|+++++.        +|....++..++.++...|++++|+.+|++++...
T Consensus       166 ~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  233 (308)
T 2ond_A          166 T----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             C----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             C----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence            1    13455555555433 79999999999999998        67788899999999999999999999999999731


Q ss_pred             HHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          673 EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       673 ~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                           ...| .....+..++.++...|+.+.|. ..++++++..|+
T Consensus       234 -----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~  273 (308)
T 2ond_A          234 -----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFRE  273 (308)
T ss_dssp             -----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTT
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHccc
Confidence                 1134 35778889999999999999999 999999999997

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.73  E-value=7.2e-17  Score=156.16  Aligned_cols=190  Identities=11%  Similarity=0.116  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      +..++.+|.++...|++++|+.+|++++.+...        ....++..+|.++...|++++|+.+|++++.+.+.    
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----   74 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----   74 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----
Confidence            478999999999999999999999999999420        22356777999999999999999999999976544    


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                         ...++..+|.+|..+|++++|+.+|++++.+.+..... ....+.++..+|.++...|++++|+.+|++++++    
T Consensus        75 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----  146 (228)
T 4i17_A           75 ---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI-EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----  146 (228)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             ---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence               36789999999999999999999999999873221000 0113467999999999999999999999999998    


Q ss_pred             cCCCCcc--HHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          634 CGPYHPD--TLGVYSNLAGTYDAIGRL---------------------------DDAIEILEFVVGIREEKLGTANPDVD  684 (727)
Q Consensus       634 ~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~g~~~p~~~  684 (727)
                          +|+  ...++..+|.+|...|+.                           ++|+.+|++++++        +|+..
T Consensus       147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~  214 (228)
T 4i17_A          147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT  214 (228)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence                899  889999999999999988                           8899999999987        57777


Q ss_pred             HHHHHHHHHHH
Q 004848          685 DEKRRLAELLK  695 (727)
Q Consensus       685 ~~~~~La~~~~  695 (727)
                      .++..|+.+..
T Consensus       215 ~~~~~l~~i~~  225 (228)
T 4i17_A          215 EIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            77777776643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.73  E-value=2.8e-16  Score=155.47  Aligned_cols=223  Identities=15%  Similarity=0.153  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  341 (727)
                      +..+..++.+|..++..|+|++|+..|++++...     +.++. ...+++.+|.+|..+|++++|+..|++++...+  
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p--   83 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIYQ--   83 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--
Confidence            3446779999999999999999999999999885     33321 245699999999999999999999999999842  


Q ss_pred             hCCCCchHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004848          342 LGETDPRVGETCRYLAEAHVQ--------ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (727)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~  413 (727)
                         +++....+++.+|.++..        .|++++|+..|++++...|.....        ...+..             
T Consensus        84 ---~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~~a~~~-------------  139 (261)
T 3qky_A           84 ---IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--------DDATQK-------------  139 (261)
T ss_dssp             ---TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--------HHHHHH-------------
T ss_pred             ---CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--------HHHHHH-------------
Confidence               245778999999999999        999999999999999988765321        111111             


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc------
Q 004848          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT------  487 (727)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------  487 (727)
                       +...         .......++.+|.+|...|++++|+..|++++...     ++++....++..+|.+|..+      
T Consensus       140 -~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~  204 (261)
T 3qky_A          140 -IREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVR  204 (261)
T ss_dssp             -HHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred             -HHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchh
Confidence             1111         11233457889999999999999999999999872     22344788999999999977      


Q ss_pred             ----CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004848          488 ----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (727)
Q Consensus       488 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (727)
                          |++++|+.+|+++++...      +++....+...++.++..+++++++.
T Consensus       205 ~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          205 ARQPERYRRAVELYERLLQIFP------DSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hcccchHHHHHHHHHHHHHHCC------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                999999999999999943      35566778888899888888876654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=9.5e-15  Score=156.25  Aligned_cols=241  Identities=17%  Similarity=0.171  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---------SLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (727)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  422 (727)
                      +....|..+...|+|++|++.|.++++..+...+..         ......++..+|.+|...|++++|++++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            345667888899999999999999999877654421         12234568899999999999999999999999888


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (727)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (727)
                      ...+.......+...++.++...|++++|+.++++++.......  +.+....++..+|.+|...|+|++|+.++++++.
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            77766666667788899999999999999999999999988765  3566788999999999999999999999999999


Q ss_pred             HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (727)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (727)
                      .....   .+.+..+.++..++.+|...|++++|..++++++.+.+.........+.++..+|.++...|+|.+|..+|.
T Consensus       164 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          164 EFKKL---DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             HHTTS---SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHHhc---ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            88763   346678899999999999999999999999999999988855555677888999999999999999999999


Q ss_pred             HHHHHHHHhCCCCch
Q 004848          583 NAISKLRAIGERKSA  597 (727)
Q Consensus       583 ~al~~~~~~~~~~~~  597 (727)
                      +++..+.........
T Consensus       241 ~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          241 ESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHTTTSSCH
T ss_pred             HHHHHhhhhhhhhhH
Confidence            999998877665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.70  E-value=3.7e-13  Score=148.88  Aligned_cols=446  Identities=8%  Similarity=-0.047  Sum_probs=296.0

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC---hhHHH
Q 004848          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ---YNEAI  285 (727)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~  285 (727)
                      .+......+|.....|..++......+. ++.|...|++++..+         |.....|...+......|+   ++.+.
T Consensus        54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~  123 (679)
T 4e6h_A           54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIE  123 (679)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred             HHHHHHHHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence            4455556789999999999999988886 999999999999987         3345567777777888888   99999


Q ss_pred             HHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCH----HHHH----HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004848          286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL----ENSL----MCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (727)
Q Consensus       286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (727)
                      .+|++++.....   +.+.    ..|..........++.    +++.    ..|++|+..    .|.-++....+|....
T Consensus       124 ~lfeRal~~~~~---~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi  192 (679)
T 4e6h_A          124 PVLARCLSKELG---NNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYL  192 (679)
T ss_dssp             HHHHHHTCSSSC---CCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHH
T ss_pred             HHHHHHHHhcCC---CCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHH
Confidence            999999987410   1222    2344444444444443    3444    556665554    3431233334454444


Q ss_pred             HHHH---------HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHH
Q 004848          358 EAHV---------QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL----------ICETKGDHEAALEHLVLA  418 (727)
Q Consensus       358 ~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~----------~~~~~g~~~~A~~~~~~a  418 (727)
                      ....         .+++++.+..+|++++.+ |..   ........|...-.          +-....+|..|...+...
T Consensus       193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~---~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~  268 (679)
T 4e6h_A          193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMD---CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW  268 (679)
T ss_dssp             HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCS---SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccH---HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence            3322         345678888999988853 111   00000001111110          011112344444444332


Q ss_pred             HHHHHhCCC--------------------ChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          419 SMTMIANDQ--------------------DAEVASVDCSIGDTYLSLS-------RYDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       419 l~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      .........                    .......|......-...+       ........|++++..        .|
T Consensus       269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p  340 (679)
T 4e6h_A          269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--------VC  340 (679)
T ss_dssp             HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TT
T ss_pred             HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--------cC
Confidence            221111110                    1122344444433322221       134456789999887        68


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-
Q 004848          472 AVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND-  549 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-  549 (727)
                      ....+|+..+..+...|+.++|. ..|++|+..+         |.....+..++.+....|++++|..+|++++...+. 
T Consensus       341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~  411 (679)
T 4e6h_A          341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD  411 (679)
T ss_dssp             TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999997 9999999873         223566888999999999999999999999987531 


Q ss_pred             -------CCCC-------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC-
Q 004848          550 -------APGQ-------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-  614 (727)
Q Consensus       550 -------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-  614 (727)
                             .+..       ......+|...+.+....|+.+.|..+|.+|++..   ...    ...+|...|.+....+ 
T Consensus       412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~----~~~lyi~~A~lE~~~~~  484 (679)
T 4e6h_A          412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLV----TPDIYLENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGS----CTHHHHHHHHHHHTTTS
T ss_pred             hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC----ChHHHHHHHHHHHHhCC
Confidence                   1110       01244578888888888999999999999998741   111    1245556666666655 


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      +++.|..+|+.+++.        .|+....+...+......|+.+.|..+|++++...     +........+......-
T Consensus       485 d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~~fE  551 (679)
T 4e6h_A          485 DTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVIFFE  551 (679)
T ss_dssp             CCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHH
Confidence            499999999999998        45556677788888889999999999999999642     11125667888888888


Q ss_pred             HHhCChhHHHHHHHHHHHHHhhh
Q 004848          695 KEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       695 ~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ...|+.+.+. ..++++++..|+
T Consensus       552 ~~~G~~~~~~-~v~~R~~~~~P~  573 (679)
T 4e6h_A          552 SKVGSLNSVR-TLEKRFFEKFPE  573 (679)
T ss_dssp             HHTCCSHHHH-HHHHHHHHHSTT
T ss_pred             HHcCCHHHHH-HHHHHHHHhCCC
Confidence            9999999999 999999999986

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.69  E-value=9.5e-16  Score=142.40  Aligned_cols=172  Identities=17%  Similarity=0.238  Sum_probs=153.9

Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      ......+..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.++++++...     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----   72 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLADA-----   72 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Confidence            3456788999999999999999999999987654332       5788899999999999999999999999862     


Q ss_pred             CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                         +....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++..  
T Consensus        73 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  139 (186)
T 3as5_A           73 ---PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--  139 (186)
T ss_dssp             ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--
Confidence               223578899999999999999999999999998        7778889999999999999999999999999986  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                            .|....++..+|.++...|++++|. ..++++++.+|+
T Consensus       140 ------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~  176 (186)
T 3as5_A          140 ------RPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEG  176 (186)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHC
T ss_pred             ------CccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence                  4666889999999999999999999 999999999998

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=3e-15  Score=152.00  Aligned_cols=227  Identities=9%  Similarity=0.045  Sum_probs=186.0

Q ss_pred             hHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HHHHHhCCCC
Q 004848          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM-------LGQL-------ENSLMCYTTGLE-VQKQVLGETD  346 (727)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~  346 (727)
                      ++|+..|++++...     +.++.    +|+.+|..+..       .|++       ++|+..|++++. +        +
T Consensus        33 ~~a~~~~~~al~~~-----p~~~~----~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~   95 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-----GHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------L   95 (308)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------T
T ss_pred             HHHHHHHHHHHHHc-----CCCHH----HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------C
Confidence            78999999999875     44443    48888888764       5885       899999999998 6        6


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      |....+|..+|.++...|++++|...|++++.+.|...       ..+|..+|.++...|++++|+..|++++..     
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----  163 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARED-----  163 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc-------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence            88889999999999999999999999999998765432       126899999999999999999999999753     


Q ss_pred             CChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          427 QDAEVASVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                       .|....++...+.+.. ..|++++|+..|+++++.        .|....+|..++.++...|++++|+.+|++++....
T Consensus       164 -~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~  234 (308)
T 2ond_A          164 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             -TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence             2223445555555543 379999999999999998        577789999999999999999999999999998521


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      -     ++.....++..++..+...|++++|..+++++++..++..
T Consensus       235 l-----~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          235 L-----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             S-----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             C-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence            0     1123466788899999999999999999999999988653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.69  E-value=9.8e-18  Score=171.63  Aligned_cols=340  Identities=14%  Similarity=0.098  Sum_probs=160.7

Q ss_pred             HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004848          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (727)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (727)
                      .+....|++++|.+++++.-          ++    .+|..||.++...|++++|+..|.++             .....
T Consensus        11 ~ll~~~~~ld~A~~fae~~~----------~~----~vWs~La~A~l~~g~~~eAIdsfika-------------~D~~~   63 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERCN----------EP----AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSS   63 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhCC----------Ch----HHHHHHHHHHHHcCCHHHHHHHHHcC-------------CCHHH
Confidence            34457788999999999861          11    25999999999999999999999763             12347


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004848          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA  432 (727)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  432 (727)
                      +..++..+...|+|++|+.+++.+++..+.         +.+...++.+|.+.|++.++.+++.           .|.. 
T Consensus        64 y~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~-  122 (449)
T 1b89_A           64 YMEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFIN-----------GPNN-  122 (449)
T ss_dssp             ------------------------------------------------------CHHHHTTTTT-----------CC---
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHc-----------CCcH-
Confidence            788888999999999999999988875322         1346778999999999999988774           2222 


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      .++..+|..+...|+|++|..+|.++                ..|..+|.++.++|+|++|++.++++.           
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----------  175 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN-----------  175 (449)
T ss_dssp             --------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----------
Confidence            48999999999999999999999865                357889999999999999999999982           


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                         ...+|..++.++...|+++.|..+....+ ..          +.-+..+..+|.+.|++++|+.++++++.+-    
T Consensus       176 ---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~----------ad~l~~lv~~Yek~G~~eEai~lLe~aL~le----  237 (449)
T 1b89_A          176 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VH----------ADELEELINYYQDRGYFEELITMLEAALGLE----  237 (449)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----
T ss_pred             ---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC----------HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc----
Confidence               14678889999999999999966655311 11          2223468889999999999999999998751    


Q ss_pred             CCCchhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                          .....++..+|.+|.+  .++..++++.|...+.+-+-+..   -.....|..+..+|...++++.|+...-+...
T Consensus       238 ----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~  310 (449)
T 1b89_A          238 ----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPT  310 (449)
T ss_dssp             ----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             ----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence                1234677777877764  45677788877776666210000   03344788999999999999999876554321


Q ss_pred             ------HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH--HHhhh
Q 004848          671 ------IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL--DANSR  717 (727)
Q Consensus       671 ------~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al--~~~p~  717 (727)
                            .+..+..  .+.+.+.++.....|.  +....++ ..|..++  .+|+.
T Consensus       311 ~a~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l-~~ll~~l~~~ld~~  360 (449)
T 1b89_A          311 DAWKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLL-NDLLMVLSPRLDHT  360 (449)
T ss_dssp             TTCCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGH-HHHHHHHGGGCCHH
T ss_pred             hhhhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHH-HHHHHHHHhccCcH
Confidence                  0111100  2445677888777777  5556667 7777777  55554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.68  E-value=3.4e-17  Score=167.61  Aligned_cols=331  Identities=14%  Similarity=0.105  Sum_probs=154.8

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHH
Q 004848          233 SSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM  312 (727)
Q Consensus       233 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  312 (727)
                      ..|+ .++|++++++.           ++|   .+|..+|.++...|++++|+..|.++-              ....+.
T Consensus        15 ~~~~-ld~A~~fae~~-----------~~~---~vWs~La~A~l~~g~~~eAIdsfika~--------------D~~~y~   65 (449)
T 1b89_A           15 HIGN-LDRAYEFAERC-----------NEP---AVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYM   65 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccC-HHHHHHHHHhC-----------CCh---HHHHHHHHHHHHcCCHHHHHHHHHcCC--------------CHHHHH
Confidence            4454 77777777665           122   368899999999999999999997742              122488


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 004848          313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA  392 (727)
Q Consensus       313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a  392 (727)
                      .++.++...|++++|+.+++.+++..        +. +.+...++.+|.+.|++.++..+++.     |      .   .
T Consensus        66 ~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p------n---~  122 (449)
T 1b89_A           66 EVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-----P------N---N  122 (449)
T ss_dssp             ----------------------------------------------------CHHHHTTTTTC-----C-----------
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C------c---H
Confidence            88999999999999999999888751        22 56677899999999999999988752     1      0   1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                      .++..+|..+...|.|++|..+|.++              ..|..+|.++..+|+|++|++.++++.             
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------------  175 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN-------------  175 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-------------
Confidence            36999999999999999999999866              367889999999999999999999882             


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      ...+|..+..++...|+++.|..+..... .         ++..   +..+..+|...|++++|+.+++.++.+.+..  
T Consensus       176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---------~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah--  240 (449)
T 1b89_A          176 STRTWKEVCFACVDGKEFRLAQMCGLHIV-V---------HADE---LEELINYYQDRGYFEELITMLEAALGLERAH--  240 (449)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---------CHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--
T ss_pred             CchhHHHHHHHHHHcCcHHHHHHHHHHHH-h---------CHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--
Confidence            24778888999999999999966655411 1         3332   4468889999999999999999998765333  


Q ss_pred             CCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Q 004848          553 QQSTVAGIEAQMGVMYYML--GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS--  628 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  628 (727)
                           ..++..+|.+|.+-  ++..+.++.|...+.+-+-+..   -..+..|..+..+|...++++.|+...-+...  
T Consensus       241 -----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a  312 (449)
T 1b89_A          241 -----MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA  312 (449)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred             -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhh
Confidence                 56777888877654  4666777776655544221100   01235788899999999999999875544321  


Q ss_pred             ----HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004848          629 ----ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV  669 (727)
Q Consensus       629 ----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  669 (727)
                          .++.+..  .+...++++.....|.  +....++..+..++
T Consensus       313 ~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l  353 (449)
T 1b89_A          313 WKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL  353 (449)
T ss_dssp             CCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred             hhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence                1111111  2444567777777666  44455566555555

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.67  E-value=2.1e-15  Score=160.57  Aligned_cols=151  Identities=10%  Similarity=-0.052  Sum_probs=143.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 004848          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (727)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (727)
                      .+..+..+|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++++.++.+|++||+.+.
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            34556789999999999999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      .+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+......|+.++..+|++++|. ..|.++.+..
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~~~~~  465 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 8888886643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.67  E-value=9.4e-15  Score=138.14  Aligned_cols=194  Identities=12%  Similarity=0.148  Sum_probs=156.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004848          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (727)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (727)
                      +..|++++|...++....        +......++..+|.++...|++++|+.++++++.+++..   ...+....++..
T Consensus         3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~   71 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GDHTAEHRALHQ   71 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHH
Confidence            467899999885544322        244678999999999999999999999999999998874   346778899999


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHH
Q 004848          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (727)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (727)
                      +|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+.  ....+.+
T Consensus        72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~  149 (203)
T 3gw4_A           72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACA  149 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHH
Confidence            99999999999999999999999998763344467788999999999999999999999999998776554  3445778


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  651 (727)
                      +..+|.++...|++++|+.++++++.+.+....  ......++..++.+
T Consensus       150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence            899999999999999999999999999887543  23333444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.66  E-value=1.2e-15  Score=172.10  Aligned_cols=207  Identities=10%  Similarity=-0.060  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      .+++..+   ...|++++|+..|++++...-......+|....++..+|.+|...|++++|+..|++++++         
T Consensus       395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------  462 (681)
T 2pzi_A          395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---------  462 (681)
T ss_dssp             THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------
T ss_pred             chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------
Confidence            3444444   7899999999999999821111111126888899999999999999999999999999999         


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      .|....+++.+|.++..+|++++|+..|++++++.+..       ..++.++|.+|..+|++++ +.+|++++++     
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-----  529 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWST-----  529 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----
Confidence            44457889999999999999999999999999998766       3688999999999999999 9999999987     


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGI  671 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  671 (727)
                         .+....+++++|.++..+|++++|+..|++++++        +|....+++++|.++...++.++| ...+++|+..
T Consensus       530 ---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~  598 (681)
T 2pzi_A          530 ---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARR  598 (681)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHH
T ss_pred             ---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence               2334679999999999999999999999999998        899999999999999888876666 6677777766


Q ss_pred             HHHh
Q 004848          672 REEK  675 (727)
Q Consensus       672 ~~~~  675 (727)
                      ....
T Consensus       599 l~~~  602 (681)
T 2pzi_A          599 VEAL  602 (681)
T ss_dssp             HHTS
T ss_pred             HhhC
Confidence            6544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.65  E-value=2.6e-14  Score=143.88  Aligned_cols=198  Identities=13%  Similarity=-0.009  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      +.....+...+..+...|++++|+..+.+++......   .........+..+|.++...|++++|+.++++++.+....
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  148 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence            4555677788899999999999999999999874321   1122345567789999999999999999999999876554


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                       ......+.++..+|.+|...|++++|+.+|++++.+....... ......+++++|.+|..+|++++|+.+|++++.+.
T Consensus       149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             3334457789999999999999999999999999987765533 22234799999999999999999999999999997


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIREEK  675 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  675 (727)
                      ....  .......+++++|.+|..+|++++| ..+|++++.+.+..
T Consensus       227 ~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          227 CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            5432  2455678999999999999999999 88899999987654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.65  E-value=2.4e-14  Score=135.36  Aligned_cols=194  Identities=15%  Similarity=0.134  Sum_probs=158.3

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (727)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (727)
                      ++..|++++|...++....        +.+....++..+|.++...|++++|+.++++++.+......  ....+.++..
T Consensus         2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~   71 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--HTAEHRALHQ   71 (203)
T ss_dssp             -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence            3567899999985544321        13467899999999999999999999999999999887653  4566788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004848          398 MGLICETKGDHEAALEHLVLASMTMIANDQDA-EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (727)
Q Consensus       398 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (727)
                      +|.++...|++++|+.++.+++.+....++.+ ..+.++..+|.++...|++++|+.++++++.+.+...  +......+
T Consensus        72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~  149 (203)
T 3gw4_A           72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACA  149 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHH
Confidence            99999999999999999999999988877554 7888999999999999999999999999999877654  23445677


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHH
Q 004848          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (727)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (727)
                      +..+|.++...|++++|+.++++++.+.+..   .+......++..++.+
T Consensus       150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAEL---EDSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHhcccch
Confidence            8999999999999999999999999998874   2344555555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=5.2e-16  Score=138.86  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=127.3

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (727)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (727)
                      .||.++...|++++|+..+++++...+..       ...++.+|.+|...|++++|+.+|++++++        .+....
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~   66 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK   66 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            47889999999999999999998877655       456789999999999999999999999997        233468


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhcCCCC
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI-LEFVVGIREEKLGTAN  680 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~g~~~  680 (727)
                      ++..+|.++...|++++|+.+|++++++        +|....+++.+|.+|...|++++|... +++++++        +
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~  130 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F  130 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence            9999999999999999999999999999        899999999999999999999887765 5999988        6


Q ss_pred             hhHHHHHHHHHHHHHHhCC
Q 004848          681 PDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       681 p~~~~~~~~La~~~~~~g~  699 (727)
                      |..+.++..++.++...|+
T Consensus       131 P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHTCCC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            8888889999999988886

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.65  E-value=1.7e-14  Score=145.29  Aligned_cols=197  Identities=13%  Similarity=-0.001  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004848          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      .....+...+..+...|++++|+.++++++......   .........+..+|.++...|++++|+.+|++++.+.... 
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-  148 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-
Confidence            334455566788899999999999999998753210   0111224456679999999999999999999999965443 


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (727)
                      ......+.++.++|.+|..+|++++|+.+|+++++.+..... .......+++++|.+|..+|++++|+.++++++++..
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333455678999999999999999999999999998877633 4556778999999999999999999999999999987


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHh
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGR-LDDAIEILEFVVGIREEK  675 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~  675 (727)
                      ....  .+....+++++|.+|..+|+ +++|+.+|++|+.+.+..
T Consensus       228 ~~~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          228 RINS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HTTB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            7543  46678899999999999995 699999999999998754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=3.6e-15  Score=141.70  Aligned_cols=168  Identities=14%  Similarity=0.103  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 004848          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----------------MGVMYYMLGNYSDSYDS  580 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~  580 (727)
                      +..+...|..+...|++++|+.+|++++.+.+..       ..+++.                +|.+|...|++++|+.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4567788999999999999999999999987765       356666                99999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC--h
Q 004848          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--L  658 (727)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~  658 (727)
                      |++++++        .+....++..+|.++...|++++|+.+|++++++        +|+...+++.+|.+|...|+  .
T Consensus        77 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           77 YKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence            9999987        2334689999999999999999999999999999        89999999999999987764  3


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          659 DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       659 ~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+...+++++.        ..| ...+++.+|.++...|++++|+ .+|+++++++|+
T Consensus       141 ~~~~~~~~~~~~--------~~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~  189 (208)
T 3urz_A          141 KKLETDYKKLSS--------PTK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHC---C--------CCH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCC
T ss_pred             HHHHHHHHHHhC--------CCc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence            455666665542        123 3457788999999999999999 999999999997

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=6e-15  Score=140.18  Aligned_cols=164  Identities=12%  Similarity=0.134  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHcCChHHHHHH
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR----------------LADMYNRTGKLRESKSY  496 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~  496 (727)
                      ..+...|..+...|++++|+.+|++++.+        +|....+++.                +|.+|...|++++|+..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            45677899999999999999999999998        8888889998                99999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCH--
Q 004848          497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY--  574 (727)
Q Consensus       497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--  574 (727)
                      |++++++         .|....++..+|.++...|++++|+.+|++++++.|..       ..+++.+|.+|+..|+.  
T Consensus        77 ~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           77 YKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHHH
Confidence            9999999         45557889999999999999999999999999997765       57899999999877653  


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      ..+...+.+++.       .  .....+++.+|.++...|++++|+.+|++++++
T Consensus       141 ~~~~~~~~~~~~-------~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          141 KKLETDYKKLSS-------P--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHC---C-------C--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC-------C--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344555555432       1  223456788899999999999999999999998

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.64  E-value=1.2e-14  Score=146.44  Aligned_cols=196  Identities=12%  Similarity=0.022  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                      ..+...+..+...|++++|+..+.+++...............++.+|.++...|++++|+.++++++.+.....  +...
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~  153 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHH
Confidence            34667788899999999999999988764332222234456677899999999999999999999997643322  2334


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (727)
                      ...++..+|.+|...|++++|+.+|++++.+.+..  .........+++++|.+|..+|++++|+.++++++.+.... +
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~  230 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-N  230 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-C
Confidence            57799999999999999999999999999887664  22233334799999999999999999999999999998664 5


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGE  593 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~  593 (727)
                      .....+.+++++|.+|..+|++++| ..+|++++.+.+..+.
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            5566788999999999999999999 8889999998776543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.64  E-value=1.5e-14  Score=145.73  Aligned_cols=194  Identities=12%  Similarity=0.048  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (727)
                      ..+...+..+...|++++|+..+++++...   ...+.   ....+..+|.++...|++++|+.+|++++.+....  .+
T Consensus        76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~  150 (293)
T 3u3w_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID  150 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhccc---cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence            334556778889999999999999887522   22222   24455669999999999999999999999853221  12


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      ......++..+|.+|...|++++|+.+|++++..++..  ....+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus       151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33456789999999999999999999999999988774  2357778889999999999999999999999999999987


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCC
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLRAIGER  594 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~  594 (727)
                      . +.....+.++..+|.+|..+| ++++|+.+|++|+.+++..+..
T Consensus       229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~  273 (293)
T 3u3w_A          229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH  273 (293)
T ss_dssp             T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            6 566677899999999999999 5799999999999998877654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.64  E-value=6.9e-16  Score=174.01  Aligned_cols=210  Identities=11%  Similarity=0.020  Sum_probs=167.1

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      |....+++..+   ...|++++|+..|++++...-.. .....+....++..+|.++..+|++++|+..|++++++.+..
T Consensus       391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~-~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  466 (681)
T 2pzi_A          391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDA-DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR  466 (681)
T ss_dssp             TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccc-cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence            44444555555   77899999999999998211000 011144556789999999999999999999999999998765


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                             ..+++.+|.+|..+|++++|+..|++++++.        +....++.++|.++..+|++++ +.+|++++++ 
T Consensus       467 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-  529 (681)
T 2pzi_A          467 -------WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST-  529 (681)
T ss_dssp             -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-
T ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-
Confidence                   5789999999999999999999999999972        2235789999999999999999 9999999999 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHH-HHHHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR-KAQSLE  709 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A-~~~~l~  709 (727)
                             +|....+++++|.+|..+|++++|+..|++++++        +|....++.++|.++...|+.+++ . ..++
T Consensus       530 -------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~-~~~~  593 (681)
T 2pzi_A          530 -------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTE-EQIR  593 (681)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCH-HHHH
T ss_pred             -------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCH-HHHH
Confidence                   8999999999999999999999999999999975        799999999999999887774444 3 4555


Q ss_pred             HHHHHhhh
Q 004848          710 TLLDANSR  717 (727)
Q Consensus       710 ~al~~~p~  717 (727)
                      +|++..+.
T Consensus       594 ~A~~~l~~  601 (681)
T 2pzi_A          594 DAARRVEA  601 (681)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            55544433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=9.6e-15  Score=135.53  Aligned_cols=171  Identities=13%  Similarity=0.158  Sum_probs=150.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      .......+..+|.++...|++++|+.++++++...         +....++..+|.++...|++++|+.++++++...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   74 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD   74 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            34567888999999999999999999999987662         233678999999999999999999999999988544


Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      .       ..++..+|.++...|++++|+.++++++...        +....++..+|.++...|++++|+.+|++++..
T Consensus        75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            3       4678899999999999999999999999862        123578899999999999999999999999998


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                              .|....++..+|.++...|++++|+.++++++.+.
T Consensus       140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                    67778899999999999999999999999999874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.63  E-value=1.6e-14  Score=139.08  Aligned_cols=181  Identities=11%  Similarity=0.040  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (727)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (727)
                      ...++.+|..+...|++++|+..|++++...+..    .....+++.+|.+|...|++++|+..|+++++..+.     .
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-----~   74 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----H   74 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----C
Confidence            4568899999999999999999999999876543    233568899999999999999999999999986332     2


Q ss_pred             hhHHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH--------------
Q 004848          597 AFFGVALNQMGLACVQ------------------RYSINEAVELFEEARSILEQECGPYHPDTLGV--------------  644 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------  644 (727)
                      .....+++.+|.++..                  .|++++|+..|+++++.     .|+++....+              
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence            3345678888888876                  57899999999999887     2223322222              


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ...+|.+|...|++++|+..|+++++..     |++|....+++.+|.+|.++|++++|+ ..++.++...|+
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~  216 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCC
Confidence            2678999999999999999999999874     556667789999999999999999999 999999998887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.1e-13  Score=147.88  Aligned_cols=235  Identities=10%  Similarity=0.053  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004848          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (727)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (727)
                      ....|..+...|+|++|++.|.++++..+......         ......++..+|.+|...|++++|..++.+++.+.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999998743211000         023445789999999999999999999999999987


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (727)
Q Consensus       382 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (727)
                      ....  ......+...++.++...|+++.|+.++.+++............+.++..+|.+|...|+|.+|+.++++++..
T Consensus        87 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           87 QFAK--SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             TSCH--HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             Hccc--hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            7642  23334567788999999999999999999999999988888889999999999999999999999999999887


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 004848          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (727)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (727)
                      .....  +.+....++..++.+|...|++++|..++++++.+....  ..++......+..+|.++...|++++|..+|.
T Consensus       165 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          165 FKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--YCPTQTVAELDLMSGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             HTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            66543  467888999999999999999999999999999987764  33445567888999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 004848          542 KALKIYNDAP  551 (727)
Q Consensus       542 ~al~~~~~~~  551 (727)
                      +++.......
T Consensus       241 ~a~~~~~~~~  250 (434)
T 4b4t_Q          241 ESFESYHNLT  250 (434)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHhhhhh
Confidence            9999887663

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.61  E-value=2.1e-13  Score=131.22  Aligned_cols=190  Identities=10%  Similarity=0.015  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      ..++.+|..+...|++++|+..|++++..     .++.+....+++.+|.+|...|++++|+..|+++++....      
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~------   73 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT------   73 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------
Confidence            45677788888888888888888888776     1223444577888888888888888888888888877322      


Q ss_pred             hHhHHHHHHHHHHHHHh------------------cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCH
Q 004848          513 PEEIASGLTDVSSIYES------------------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY  574 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  574 (727)
                      .+....+++.+|.++..                  .|++++|+..|+++++..|+...    ...++..++.+..     
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l~~~~~-----  144 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRLVFLKD-----  144 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHHH-----
Confidence            33345567777777765                  56788888888888776655421    1111111111110     


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (727)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (727)
                                             ........+|.+|...|++++|+..|+++++.     .|+++....++..+|.+|..
T Consensus       145 -----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          145 -----------------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHHH
Confidence                                   01234457899999999999999999999998     22244455789999999999


Q ss_pred             cCChHHHHHHHHHHHH
Q 004848          655 IGRLDDAIEILEFVVG  670 (727)
Q Consensus       655 ~g~~~~A~~~~~~al~  670 (727)
                      +|++++|+..++++..
T Consensus       197 ~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          197 MQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHh
Confidence            9999999999997765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.60  E-value=2.1e-15  Score=134.92  Aligned_cols=147  Identities=12%  Similarity=0.162  Sum_probs=126.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHH
Q 004848          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (727)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (727)
                      .||.++...|++++|+..+++++..         .|.....++.+|.+|...|++++|+.+|++++++.+..       .
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence            4788899999999999999998766         66777889999999999999999999999999997765       5


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHhcCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL-FEEARSILEQECGPY  637 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~  637 (727)
                      .++..+|.+|...|++++|+.+|++++++        .+....++..+|.++...|++++|... +++|+++        
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------  129 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------  129 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence            78999999999999999999999999987        233467899999999999999887765 5999999        


Q ss_pred             CccHHHHHHHHHHHHHHcCC
Q 004848          638 HPDTLGVYSNLAGTYDAIGR  657 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~  657 (727)
                      +|....++..++.++...|+
T Consensus       130 ~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          130 FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             STTCHHHHHHHHHHHHTCCC
T ss_pred             CcCCHHHHHHHHHHHHHhCc
Confidence            88888899999999988885

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.58  E-value=1.7e-13  Score=136.25  Aligned_cols=228  Identities=10%  Similarity=0.045  Sum_probs=195.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004848          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG--KLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (727)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (727)
                      .....++|+..+.+++.+        +|....+|+..+.++..+|  ++++++.++.+++..         .|....+|+
T Consensus        45 ~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------nPk~y~aW~  107 (306)
T 3dra_A           45 AEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---------NEKNYQIWN  107 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------CTTCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---------CcccHHHHH
Confidence            344457999999999999        8999999999999999999  999999999999998         444567788


Q ss_pred             HHHHHH----Hhc---ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhC
Q 004848          522 DVSSIY----ESM---NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--DSYDSFKNAISKLRAIG  592 (727)
Q Consensus       522 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~  592 (727)
                      ..+.++    ...   +++++++.++.+++...++.       ..+|...+.++...|.++  +++.++.++++.     
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----  175 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----  175 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----
Confidence            888888    666   78999999999999988776       578999999999999998  999999999986     


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH-HHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEIL  665 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~  665 (727)
                         ++....+|...+.+....+.      ++++++++.+++..        +|....+|+.++.++...|+..+ ...++
T Consensus       176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~  244 (306)
T 3dra_A          176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS  244 (306)
T ss_dssp             ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence               23345788999999988887      99999999999999        99999999999999999998655 44566


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH-Hhhh
Q 004848          666 EFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD-ANSR  717 (727)
Q Consensus       666 ~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~-~~p~  717 (727)
                      .+++.+.     ..++....++..|+.+|.+.|+.++|+ +.|+.+.+ .||-
T Consensus       245 ~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpi  291 (306)
T 3dra_A          245 LQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPI  291 (306)
T ss_dssp             HTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGG
T ss_pred             HHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChH
Confidence            6665431     124667789999999999999999999 99999997 7885

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.57  E-value=8.5e-14  Score=148.15  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=142.5

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004848          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (727)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (727)
                      ....+..+..+|+|++|+.++++++++.....|..+ .++.++.+||.+|..+|+|++|+.++++++++.....+..++.
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            334555677899999999999999999998888765 7889999999999999999999999999999999998888999


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      .+..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+..++..|+.++..++.+++|...|.++.+..
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.57  E-value=2.1e-13  Score=123.31  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=131.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      +....+.++..+|.++...|++++|+.++++++.+.....  +......++..+|.++...|++++|+.++++++.+...
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4456677888899999999999999999999998877654  24555678889999999999999999999999998776


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                      .   .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.+++++++
T Consensus        82 ~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           82 L---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             h---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3   3455667888999999999999999999999999988776 45556677888999999999999999999999998


Q ss_pred             HHHH
Q 004848          587 KLRA  590 (727)
Q Consensus       587 ~~~~  590 (727)
                      +.+.
T Consensus       158 ~~~~  161 (164)
T 3ro3_A          158 ISRE  161 (164)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            7654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.55  E-value=4.8e-13  Score=120.89  Aligned_cols=157  Identities=15%  Similarity=0.171  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (727)
Q Consensus       389 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (727)
                      ...+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|++++|+.++++++.+.....  
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--   83 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--
Confidence            345678999999999999999999999999999888878888889999999999999999999999999999987764  


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                      +.+....++..+|.++...|++++|+.++++++.+....   .+.+....++..+|.++...|++++|+.++++++++..
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999998763   34667788999999999999999999999999999876


Q ss_pred             hC
Q 004848          549 DA  550 (727)
Q Consensus       549 ~~  550 (727)
                      ..
T Consensus       161 ~~  162 (164)
T 3ro3_A          161 EV  162 (164)
T ss_dssp             TC
T ss_pred             Hh
Confidence            54

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.54  E-value=1.2e-13  Score=119.14  Aligned_cols=117  Identities=13%  Similarity=0.226  Sum_probs=106.7

Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                      ++..+..+..+|..|+..|+|++|+.+|++++++        .+....++.++|.++..+|++++|+..|++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            3556788999999999999999999999999987        2334689999999999999999999999999999    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                          +|....+++.+|.+|..+|++++|+..|++++++        +|++..++..|+.++
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence                8999999999999999999999999999999998        688888998888764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.54  E-value=8.1e-14  Score=128.44  Aligned_cols=170  Identities=16%  Similarity=0.026  Sum_probs=137.7

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004848          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (727)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (727)
                      ||.....++.+|..+...|+ +++|+..|++++...         |....++..+|.++...|++++|+..|++++... 
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-   70 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-   70 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred             CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence            34445578899999999997 999999999999875         5568889999999999999999999999999875 


Q ss_pred             hccCccchHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004848          297 IEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM  375 (727)
Q Consensus       297 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (727)
                          + ++..    +..++.+. ...+...+|+..|+++++.        +|....+++.+|.++...|++++|+..|++
T Consensus        71 ----p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           71 ----Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             ----C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                3 3221    22233332 2333445689999999998        788999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (727)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~  420 (727)
                      ++...|.....      .++..+|.++...|++++|+..|++++.
T Consensus       134 ~l~~~p~~~~~------~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          134 ILKVNLGAQDG------EVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHTTCTTTTTT------HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCcccChH------HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99987765322      4688999999999999999999998864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.52  E-value=2e-13  Score=117.66  Aligned_cols=105  Identities=14%  Similarity=0.157  Sum_probs=100.1

Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      .|..+..+..+|..++..|++++|+.+|++++++        +|....++.++|.+|..+|++++|+..|++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            3557889999999999999999999999999999        8999999999999999999999999999999987    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                          +|....+++.+|.+|..+|++++|+ ..|+++++++|+
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~l~P~  113 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQ-RAYEDALQVDPS  113 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCcC
Confidence                6888999999999999999999999 999999999997

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.51  E-value=2.3e-13  Score=136.31  Aligned_cols=167  Identities=13%  Similarity=0.098  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (727)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (727)
                      ....+..+|..+...|++++|+..|++++...+..       ..++..+|.++...|++++|+..|++++...       
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------  181 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------  181 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-------
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-------
Confidence            45678899999999999999999999999998766       5789999999999999999999999987641       


Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      + .........+..+...++.++|+..|++++..        +|+...+++.+|.+|...|++++|+..|++++..    
T Consensus       182 p-~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----  248 (287)
T 3qou_A          182 Q-DTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX----  248 (287)
T ss_dssp             C-SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             c-chHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence            1 23455666777788889999999999999999        8999999999999999999999999999999987    


Q ss_pred             cCCCChhH--HHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          676 LGTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       676 ~g~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                          +|..  ..++..|+.++...|+.++|. ..|++++..
T Consensus       249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al~~  284 (287)
T 3qou_A          249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQLYA  284 (287)
T ss_dssp             ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHHHH
Confidence                5666  889999999999999999999 999998864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.51  E-value=7.8e-14  Score=128.57  Aligned_cols=164  Identities=14%  Similarity=0.171  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (727)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (727)
                      ..+..+|..+...|++++|+..|++++...|..       ..++..+|.++...|++++|+.+|++++...    + . +
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~-~   73 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQFELAQELLATIPLEY----Q-D-N   73 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-C-H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-C-h
Confidence            357789999999999999999999999998877       5789999999999999999999999987641    1 1 1


Q ss_pred             hHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          598 FFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       598 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                         ..+..++.+. ...+...+|+..|++++..        +|+...+++.+|.++...|++++|+..|++++.+     
T Consensus        74 ---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----  137 (176)
T 2r5s_A           74 ---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-----  137 (176)
T ss_dssp             ---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred             ---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence               2333334332 2333445689999999998        8998999999999999999999999999999965     


Q ss_pred             CCCChhH--HHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          677 GTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       677 g~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                         +|..  ..++..++.++...|+.++|+ ..|++++..
T Consensus       138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~~al~~  173 (176)
T 2r5s_A          138 ---NLGAQDGEVKKTFMDILSALGQGNAIA-SKYRRQLYS  173 (176)
T ss_dssp             ---CTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHHHHHHH
T ss_pred             ---CcccChHHHHHHHHHHHHHhCCCCcHH-HHHHHHHHH
Confidence               4543  568999999999999999999 999998863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.51  E-value=2e-12  Score=128.51  Aligned_cols=238  Identities=8%  Similarity=-0.069  Sum_probs=197.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD  482 (727)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  482 (727)
                      ....++|+..+.+++.+      .|....+|+..+.++..+|  ++++++.++..++..        +|....+|+..+.
T Consensus        46 ~e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~  111 (306)
T 3dra_A           46 EEYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQL  111 (306)
T ss_dssp             TCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHH
Confidence            34447899999999864      6777889999999999999  999999999999998        8999999999999


Q ss_pred             HH----HHc---CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHhCCCC
Q 004848          483 MY----NRT---GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE--QAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       483 ~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~  553 (727)
                      ++    ...   +++++++.++.+++..         +|....+|...+.++...|.++  ++++++.++++..+..   
T Consensus       112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~---------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N---  179 (306)
T 3dra_A          112 IIGQIMELNNNDFDPYREFDILEAMLSS---------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN---  179 (306)
T ss_dssp             HHHHHHHHTTTCCCTHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC---
Confidence            99    777   8999999999999998         4555789999999999999998  9999999999887665   


Q ss_pred             CccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH-HHHHHHHH
Q 004848          554 QSTVAGIEAQMGVMYYMLGN------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE-AVELFEEA  626 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  626 (727)
                          ..+|...+.++...+.      +++++.++.+++.+        .+....+|+.++.++...|+..+ ...++.++
T Consensus       180 ----~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~  247 (306)
T 3dra_A          180 ----NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF  247 (306)
T ss_dssp             ----HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred             ----HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence                4788899999988887      89999999999986        23345789999999999988544 44566665


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004848          627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE  692 (727)
Q Consensus       627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~  692 (727)
                      +.+-     ...+....++..+|.+|...|+.++|+++|+.+.+.       .+|.....+...+.
T Consensus       248 ~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~yW~~~~~  301 (306)
T 3dra_A          248 VDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNFWDYQIS  301 (306)
T ss_dssp             EEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHHHHHHHH
T ss_pred             Hhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHh
Confidence            5531     113667779999999999999999999999998752       27877777766554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=4.6e-13  Score=134.02  Aligned_cols=170  Identities=15%  Similarity=0.014  Sum_probs=150.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchh
Q 004848          218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI  297 (727)
Q Consensus       218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  297 (727)
                      |.....++.+|..+...|+ +++|+..|++++...         |....++..+|.++...|++++|+..|++++...  
T Consensus       114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--  181 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLS---------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--  181 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--
T ss_pred             CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--
Confidence            7888999999999999998 999999999999874         4457789999999999999999999999998875  


Q ss_pred             ccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004848          298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (727)
Q Consensus       298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (727)
                         ++..    ..+...+..+...++.++|+..|++++..        +|....+++.+|.++...|++++|+..|.+++
T Consensus       182 ---p~~~----~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l  246 (287)
T 3qou_A          182 ---QDTR----YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHL  246 (287)
T ss_dssp             ---CSHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---cchH----HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               3222    23666777788899999999999999999        79999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (727)
Q Consensus       378 ~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~  420 (727)
                      ...|...+      ..++..++.++...|+.++|+..|++++.
T Consensus       247 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          247 RXDLTAAD------GQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHCTTGGG------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hccccccc------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99876532      25689999999999999999999998875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.50  E-value=6e-11  Score=131.23  Aligned_cols=412  Identities=10%  Similarity=-0.061  Sum_probs=261.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHH
Q 004848          239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY  318 (727)
Q Consensus       239 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  318 (727)
                      .+-+..|++++...         |.....|..++......+.++.+...|++++...     +..    ...|...+..-
T Consensus        49 ~d~i~~lE~~l~~n---------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~----~~lW~~Yi~~E  110 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQ---------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLM----ANIWCMRLSLE  110 (679)
T ss_dssp             SCHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCC----HHHHHHHHHHH
Confidence            34455566666541         4457778888888889999999999999999886     222    23477777777


Q ss_pred             HHhCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH----HH----HHHHHHHHHHHHHh-cCCC
Q 004848          319 AMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF----SE----AQKFCQMALDIHKD-NGSP  386 (727)
Q Consensus       319 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~~~~-~~~~  386 (727)
                      ...|+   ++.+..+|++++.....      +....+|..........++.    ++    ....|++|+..... ..  
T Consensus       111 ~~~~~~~~~~~v~~lfeRal~~~~~------~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~--  182 (679)
T 4e6h_A          111 FDKMEELDAAVIEPVLARCLSKELG------NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP--  182 (679)
T ss_dssp             HTC--CCCHHHHHHHHHHHTCSSSC------CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--
T ss_pred             HhhCCcchHHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--
Confidence            88888   99999999999987210      13334666655555455543    33    44677777765433 22  


Q ss_pred             CCHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-------------HHH
Q 004848          387 ASLEEAADRRLMGLIC---------ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT-------------YLS  444 (727)
Q Consensus       387 ~~~~~a~~~~~l~~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-------------~~~  444 (727)
                      ...   .+|.......         ...++.+.+..+|.+++.+    +.. ....+|......             -..
T Consensus       183 ~s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~  254 (679)
T 4e6h_A          183 KSI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGEL  254 (679)
T ss_dssp             SCH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHH
T ss_pred             cch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence            122   2233332222         2344567788888887631    111 111222111111             011


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcC--CC----------------ChhHHHHHHHHHHHHHHcC-------ChHHHHHHHHH
Q 004848          445 LSRYDEAGFAYQKALTAFKTNKG--EN----------------HPAVASVFVRLADMYNRTG-------KLRESKSYCEN  499 (727)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~--~~----------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~  499 (727)
                      ..+|+.|...+.+.-.+...+..  +.                .......|......-...+       ........|++
T Consensus       255 ~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~  334 (679)
T 4e6h_A          255 SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQ  334 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHH
Confidence            12344444444332222111110  00                0122344444443322221       12345678999


Q ss_pred             HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 004848          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY  578 (727)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  578 (727)
                      ++..+         +....+|...+..+...|+.++|. ..|++|+...|..       ..++..++.+....|++++|.
T Consensus       335 aL~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR  398 (679)
T 4e6h_A          335 AAQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIE  398 (679)
T ss_dssp             HHHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHH
Confidence            99883         335778999999999999999997 9999999876544       356778899999999999999


Q ss_pred             HHHHHHHHHHHHh-------CCCC-------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004848          579 DSFKNAISKLRAI-------GERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (727)
Q Consensus       579 ~~~~~al~~~~~~-------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  644 (727)
                      .+|++++......       .+..       ......+|...+.+..+.|+.+.|..+|.+|++..    .   +....+
T Consensus       399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~---~~~~~l  471 (679)
T 4e6h_A          399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----K---LVTPDI  471 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----G---GSCTHH
T ss_pred             HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C---CCChHH
Confidence            9999999865311       0100       01245578888888889999999999999998751    0   112345


Q ss_pred             HHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004848          645 YSNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  716 (727)
Q Consensus       645 ~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p  716 (727)
                      |...|.+....+ +++.|..+|+.+++.+        |.....+...+.+....|+.+.|. ..|++++...|
T Consensus       472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~  535 (679)
T 4e6h_A          472 YLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence            666677766665 4999999999999875        444556667788888999999999 99999998776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.49  E-value=5.2e-13  Score=139.73  Aligned_cols=122  Identities=12%  Similarity=0.140  Sum_probs=116.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (727)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (727)
                      ..|+|++|+.++++++++..+..+..++..+.++.+||.+|..+|+|++|+.++++++.+.++.+|++||+.+..+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999999999988888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004848          650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA  691 (727)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La  691 (727)
                      .+|..+|++++|+.+|++|+++.+..+|++||.+.++..+|.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999999999999999998887764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.49  E-value=3.4e-13  Score=130.71  Aligned_cols=210  Identities=10%  Similarity=-0.033  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH-------HHHHHhcccHHHHHHHHHHHHHHH
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV-------SSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      ..++..|.-+ ..+++..|...|.+++.+         .|..+.+|..+       +.++...++..+++..+++++.+.
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~   77 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS   77 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3445555555 589999999999999999         66778999999       899999999999999999999977


Q ss_pred             HhCCCCCcc--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh
Q 004848          548 NDAPGQQST--------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR  613 (727)
Q Consensus       548 ~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  613 (727)
                      +...+....              ...+...++.++...|+|++|...|..++..       .+ ... +.+.+|.++.+.
T Consensus        78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~p-~~~-~~~~~a~l~~~~  148 (282)
T 4f3v_A           78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------GS-EHL-VAWMKAVVYGAA  148 (282)
T ss_dssp             GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------TC-HHH-HHHHHHHHHHHT
T ss_pred             hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CC-chH-HHHHHHHHHHHc
Confidence            765443322              2456677899999999999999999877642       22 234 889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHH
Q 004848          614 YSINEAVELFEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLA  691 (727)
Q Consensus       614 g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La  691 (727)
                      +++++|+.+|+++...       .+|.. ..+++.+|.++..+|++++|+.+|++++.      ++..|. ..++++.+|
T Consensus       149 ~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~g  215 (282)
T 4f3v_A          149 ERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLA  215 (282)
T ss_dssp             TCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHH
Confidence            9999999999876543       02322 45899999999999999999999999974      232265 788999999


Q ss_pred             HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++.++|+.++|. ..|++++..+|.
T Consensus       216 laL~~lGr~deA~-~~l~~a~a~~P~  240 (282)
T 4f3v_A          216 MARRSQGNESAAV-ALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHTCHHHHH-HHHHHHHHHSCC
T ss_pred             HHHHHcCCHHHHH-HHHHHHHhcCCc
Confidence            9999999999999 999999999986

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.49  E-value=5.2e-14  Score=125.07  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=99.4

Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      .+....+++.+|.++...|++++|+.+|++++.+        +|....+|+++|.+|..+|++++|+.+|++++.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            3456789999999999999999999999999999        8999999999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                          +|+.+.+++++|.+|..+|++++|+ ..|++++++.|+
T Consensus       100 ----~P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~  136 (151)
T 3gyz_A          100 ----GKNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSND  136 (151)
T ss_dssp             ----SSSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence                6888889999999999999999999 999999999987

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.48  E-value=4e-13  Score=148.89  Aligned_cols=156  Identities=10%  Similarity=0.067  Sum_probs=126.6

Q ss_pred             cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 004848          530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (727)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  609 (727)
                      .|++++|+.+|+++++..+..       ..++..+|.++...|++++|+.+|++++++        .+....++..+|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            478999999999999887655       578999999999999999999999999985        22346789999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (727)
Q Consensus       610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (727)
                      +..+|++++|+.+|++++++        +|....++..+|.+|..+|++++|+.+|++++++        +|....++..
T Consensus        67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  130 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ  130 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            99999999999999999999        8888899999999999999999999999999987        5777889999


Q ss_pred             HHHHHHHh---CChhHHHHHHHHHHHHHhhh
Q 004848          690 LAELLKEA---GRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       690 La~~~~~~---g~~~~A~~~~l~~al~~~p~  717 (727)
                      ++.++...   |++++|. ..|+++++.+|.
T Consensus       131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~  160 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCC
T ss_pred             HHHHHHHhhccccHHHHH-HHHHHHHhcCCc
Confidence            99999999   9999999 999999999987

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.47  E-value=7e-13  Score=139.24  Aligned_cols=131  Identities=13%  Similarity=-0.025  Sum_probs=124.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004848          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (727)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (727)
                      -+..+|+|++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++.+.++.+|++||+.+..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            35578999999999999999888877778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                      +||.+|..+|++++|+.+|++|+++.+..+|++||.+..++.+|+.+...+
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.47  E-value=1.8e-12  Score=123.25  Aligned_cols=177  Identities=18%  Similarity=0.137  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 004848          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE  528 (727)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  528 (727)
                      .+|+.+|+++.+.          ..+.+++.||.+|...+++++|+.+|+++++.      +     ...+++.||.+|.
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g-----~~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------G-----DGDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T-----CHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C-----CHHHHHHHHHHHH
Confidence            3577788887763          34688999999999999999999999999875      1     2568899999999


Q ss_pred             hcc----cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 004848          529 SMN----ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (727)
Q Consensus       529 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (727)
                      . +    ++++|+.+|+++.+.     +    ...+++.+|.+|..    .+++++|+.+|+++++.      ......+
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~~-----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~  125 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVEA-----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAV  125 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchH
Confidence            8 7    999999999999653     1    14688899999998    89999999999999864      1111246


Q ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHH
Q 004848          601 VALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G-----RLDDAIEILEFVVG  670 (727)
Q Consensus       601 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~  670 (727)
                      .+++.||.+|..    .+++++|+.+|+++++.         +....++++||.+|... |     ++++|+.+|+++++
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            899999999999    88999999999999875         33445899999999874 3     89999999999997


Q ss_pred             H
Q 004848          671 I  671 (727)
Q Consensus       671 ~  671 (727)
                      .
T Consensus       197 ~  197 (212)
T 3rjv_A          197 E  197 (212)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.47  E-value=8.7e-13  Score=125.50  Aligned_cols=178  Identities=11%  Similarity=0.027  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (727)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (727)
                      .+|+.+|+++.+.           ..+.+++.+|.+|...+++++|+.+|+++.+.     +.    ..+++.+|.+|..
T Consensus         3 ~eA~~~~~~aa~~-----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~----~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA-----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GD----GDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHc
Confidence            3577888888765           12568999999999999999999999999764     21    4688899999998


Q ss_pred             cC----CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCc--c
Q 004848          571 LG----NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHP--D  640 (727)
Q Consensus       571 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~--~  640 (727)
                       +    ++++|+.+|+++.+.          ....+++.||.+|..    .+++++|+.+|+++++.        .+  .
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcc
Confidence             7    999999999999652          135789999999998    88999999999999986        44  4


Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh-C-----ChhHHHHHHHHH
Q 004848          641 TLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA-G-----RVRSRKAQSLET  710 (727)
Q Consensus       641 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~-g-----~~~~A~~~~l~~  710 (727)
                      ...++++||.+|..    .+++++|+.+|+++++.         +....+++.||.+|... |     ++++|+ .+|++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~-~~~~~  193 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL-HWLNV  193 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHH
Confidence            57899999999999    89999999999999874         23345889999999875 3     899999 99999


Q ss_pred             HHHHhhh
Q 004848          711 LLDANSR  717 (727)
Q Consensus       711 al~~~p~  717 (727)
                      +++....
T Consensus       194 A~~~g~~  200 (212)
T 3rjv_A          194 SCLEGFD  200 (212)
T ss_dssp             HHHHTCH
T ss_pred             HHHcCCH
Confidence            9987543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.46  E-value=4.3e-12  Score=122.93  Aligned_cols=222  Identities=12%  Similarity=-0.003  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------HHHHHHcCChhHHHHHHHHhcc
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-------AAIYCSLGQYNEAIPVLEQSIE  293 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~  293 (727)
                      ...++..|.-+ ..++ +..|+++|.+++.+.         |....+|..+       +.++...+++.+++..+++++.
T Consensus         7 ~~~~~~~~~~~-~~~d-~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~   75 (282)
T 4f3v_A            7 LASLFESAVSM-LPMS-EARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ   75 (282)
T ss_dssp             HHHHHHHHHHH-TTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred             HHHHHHHHhcc-cCCC-HHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            44567777776 5776 999999999999973         6678889999       8999999999999999999999


Q ss_pred             cchhccCccch------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004848          294 IPVIEEGQEHA------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (727)
Q Consensus       294 ~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (727)
                      +.+........            ...-.+...++.++...|+|++|...|..++..        .|... +++.+|.+++
T Consensus        76 l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~  146 (282)
T 4f3v_A           76 ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYG  146 (282)
T ss_dssp             CCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHH
T ss_pred             CChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHH
Confidence            76543332222            011335677899999999999999999988765        57777 9999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHH
Q 004848          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGD  440 (727)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~  440 (727)
                      ..++|++|+.+|+.+....      +......+++.+|.++..+|++++|+.+|++++.    ....|. ...+++.+|.
T Consensus       147 ~~~r~~dA~~~l~~a~~~~------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          147 AAERWTDVIDQVKSAGKWP------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HTTCHHHHHHHHTTGGGCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHhhccC------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHH
Confidence            9999999999998664331      1112245799999999999999999999998862    222144 7778999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004848          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA  481 (727)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  481 (727)
                      ++..+|+.++|...|++++..        +|. ..+...|.
T Consensus       217 aL~~lGr~deA~~~l~~a~a~--------~P~-~~~~~aL~  248 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTT--------HPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence            999999999999999999998        676 66555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.44  E-value=2.9e-13  Score=138.76  Aligned_cols=166  Identities=14%  Similarity=0.166  Sum_probs=141.0

Q ss_pred             hcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------chhHHH
Q 004848          529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-------SAFFGV  601 (727)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~  601 (727)
                      .++++++|+..+++++...+..       +.++..+|.+|+..|++++|+.+|++++.+........       .+....
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence            4677788888888888776554       67899999999999999999999999999854321100       112357


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      ++.++|.++..+|++++|+.+|++++++        +|....+++.+|.+|..+|++++|+.+|++++++        +|
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P  261 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP  261 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence            9999999999999999999999999999        8889999999999999999999999999999987        68


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ....++..|+.++..+|++++|....|++++...+.
T Consensus       262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            888899999999999999999954678887765443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.43  E-value=3.2e-13  Score=119.96  Aligned_cols=102  Identities=10%  Similarity=0.011  Sum_probs=94.0

Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                      .+....+++.+|.++...|++++|+.+|++++.+        .+....+|..+|.++..+|++++|+.+|++++.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            3445788999999999999999999999999987        2335689999999999999999999999999999    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                          +|+...+++++|.+|..+|++++|+.+|++++++
T Consensus       100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                8888899999999999999999999999999987

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.43  E-value=2e-11  Score=121.89  Aligned_cols=226  Identities=11%  Similarity=0.034  Sum_probs=186.8

Q ss_pred             HHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHhcCCCCC
Q 004848          443 LSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       443 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      ...|.+. +|+.++.+++.+        +|....+|+..+.++...+.          +++++.+++.++..        
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------  103 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------  103 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence            3556665 799999999998        89999999999999988776          68899999999888        


Q ss_pred             ChHhHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 004848          512 PPEEIASGLTDVSSIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSDSYDSFKNAISKL  588 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  588 (727)
                       +|....+|...+.++...++  +++++.++.+++++.+..       ..+|...+.++...|. +++++.++.+++.. 
T Consensus       104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-  174 (331)
T 3dss_A          104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-  174 (331)
T ss_dssp             -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred             -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence             45557889999999999994  899999999999987766       5789999999999998 69999999999986 


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  654 (727)
                             .+....+|+..+.++...              +.++++++++.+++.+        +|+...+|+.+..++..
T Consensus       175 -------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          175 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             -------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred             -------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence                   233457888888888877              5689999999999999        89999999877777666


Q ss_pred             c-----------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH---HhCChhHHHHHHHHHHHHHhhh
Q 004848          655 I-----------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK---EAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       655 ~-----------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~---~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .           +.++++++++.+++++        .|+...++..++.+..   ..|..++.. ..|.+++++||-
T Consensus       240 ~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~  307 (331)
T 3dss_A          240 GSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPM  307 (331)
T ss_dssp             SSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGG
T ss_pred             ccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcc
Confidence            5           4578888888888877        5666666655554433   357788888 999999999996

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.43  E-value=4.8e-12  Score=110.09  Aligned_cols=134  Identities=20%  Similarity=0.342  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      .+++.+|.++...|++++|+.++++++...        +....++..+|.++...|++++|+.+|++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            357789999999999999999999998752        123567888999999999999999999999988        6


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      |....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|. ..+++++..+|.
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~  135 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence            777788999999999999999999999999986        4666788999999999999999999 999999998874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.43  E-value=1.5e-12  Score=144.26  Aligned_cols=165  Identities=13%  Similarity=0.058  Sum_probs=128.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 004848          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS  524 (727)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  524 (727)
                      .|++++|+..|+++++.        .|....++..+|.++...|++++|+.+|++++++         .+....++..+|
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPGHPEAVARLG   64 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------STTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHH
Confidence            47899999999999987        7888899999999999999999999999999988         344477899999


Q ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 004848          525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN  604 (727)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  604 (727)
                      .+|..+|++++|+.+|++++++.+..       ..++..+|.+|...|++++|+.+|++++++.        +....++.
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~  129 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA  129 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence            99999999999999999999986554       5788999999999999999999999999872        22357889


Q ss_pred             HHHHHHHHh---CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848          605 QMGLACVQR---YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (727)
Q Consensus       605 ~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (727)
                      .+|.++...   |++++|+..|+++++.        +|.....+..++
T Consensus       130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~  169 (568)
T 2vsy_A          130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--------GVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHHHHH--------TCCCSCHHHHTT
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhc--------CCcccChHHHhC
Confidence            999999999   9999999999999998        666555666665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.41  E-value=4.7e-12  Score=109.26  Aligned_cols=109  Identities=15%  Similarity=0.211  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .+.++.++|.+++..|+|++|+.+|++|+++        +|....++.++|.+|..+|++++|+..|++++++..... .
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-~   77 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-A   77 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-h
Confidence            5678899999999999999999999999999        899999999999999999999999999999999865432 3


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++....++.++|.++..+|++++|+ ++|++++..+|+
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~  115 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSEFRD  115 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence            34556789999999999999999999 999999998775

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.39  E-value=2e-12  Score=132.49  Aligned_cols=163  Identities=13%  Similarity=0.076  Sum_probs=139.4

Q ss_pred             HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC--------ccH
Q 004848          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ--------STV  557 (727)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~  557 (727)
                      .++++++|+..|++++..         .+..+.++..+|.++...|++++|+.+|++++.+.+......        ...
T Consensus       125 ~L~~~~~A~~~~~~a~~~---------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~  195 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE---------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR  195 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence            456778888888887776         566788999999999999999999999999999987652211        122


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      ..++.++|.+|..+|++++|+.+|++++.+.        +....+++.+|.+|..+|++++|+.+|++++++        
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------  259 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------  259 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence            5789999999999999999999999999972        234679999999999999999999999999999        


Q ss_pred             CccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHH
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIRE  673 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~  673 (727)
                      +|....++..++.++..+|++++| ...|++++....
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888899999999999999999999 567787776543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.38  E-value=6.8e-12  Score=108.23  Aligned_cols=108  Identities=10%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      ++.+.++.++|..++..|+|++|+.+|++++++         .|....++.++|.+|..+|++++|+..|++++++.+..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            566788999999999999999999999999999         44557889999999999999999999999999999988


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      ......++.++..+|.++..+|++++|+.+|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666677889999999999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.38  E-value=2e-12  Score=114.98  Aligned_cols=104  Identities=14%  Similarity=0.087  Sum_probs=97.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      +....+++.+|.++...|++++|+.+|++++.+        +|....+++.+|.+|..+|++++|+.+|++++.+     
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   84 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----   84 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            446778999999999999999999999999999        8888999999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                         +|+...+++.+|.+|...|++++|+ ..|+++++++|.
T Consensus        85 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  121 (148)
T 2vgx_A           85 ---DIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQELIAN  121 (148)
T ss_dssp             ---STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTT
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence               5777889999999999999999999 999999999986

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.37  E-value=4e-12  Score=113.04  Aligned_cols=123  Identities=13%  Similarity=0.083  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004848          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (727)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  618 (727)
                      .|++++.+.+.       ....++.+|.++...|++++|+.+|++++.+        .+....+|..+|.++...|++++
T Consensus         9 ~~~~al~~~p~-------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~   73 (148)
T 2vgx_A            9 TIAMLNEISSD-------TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDL   73 (148)
T ss_dssp             SHHHHTTCCHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHcCCHh-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHH
Confidence            45555544433       3678899999999999999999999999986        23346789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR  689 (727)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~  689 (727)
                      |+.+|++++.+        +|+...+++++|.+|..+|++++|+.+|++++++.     +.+|........
T Consensus        74 A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~  131 (148)
T 2vgx_A           74 AIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHH
T ss_pred             HHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHH
Confidence            99999999999        78888899999999999999999999999999885     456665444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.37  E-value=6.5e-12  Score=109.82  Aligned_cols=117  Identities=12%  Similarity=-0.037  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP----YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (727)
                      .+..+..+|..++..|+|++|+..|++|+++.......    ..|....+|.++|.++..+|++++|+..|.++++++..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            35678889999999999999999999999993220000    00113449999999999999999999999999998654


Q ss_pred             hcCCCChhHHHHH----HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          675 KLGTANPDVDDEK----RRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       675 ~~g~~~p~~~~~~----~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .. +-+|+...+|    +++|.++..+|++++|+ ..|+++++++|+
T Consensus        90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl-~~y~kAlel~p~  134 (159)
T 2hr2_A           90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAM-PEFKKVVEMIEE  134 (159)
T ss_dssp             HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence            43 5578999999    99999999999999999 999999999998

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.36  E-value=3.1e-11  Score=109.49  Aligned_cols=136  Identities=15%  Similarity=0.114  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                      .+..+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++.+       
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------   76 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            35678899999999999999999999999862        223678999999999999999999999999998       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK--RRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~--~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                       +|....+++.+|.++..+|++++|+.+|++++.+        +|....++  ..++..+...|++++|+ ..++++..+
T Consensus        77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~  146 (166)
T 1a17_A           77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSV  146 (166)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HcccchHHH
Confidence             7888889999999999999999999999999987        34445555  45555588999999999 999999887


Q ss_pred             hhh
Q 004848          715 NSR  717 (727)
Q Consensus       715 ~p~  717 (727)
                      .+.
T Consensus       147 ~~~  149 (166)
T 1a17_A          147 VDS  149 (166)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            766

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.36  E-value=4.3e-12  Score=120.78  Aligned_cols=139  Identities=12%  Similarity=0.007  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      ..++.+|.++...|++++|+.+|++++.       .    ...++..+|.++...|++++|+.+|++++.+        +
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            4567899999999999999999998841       1    2468999999999999999999999999999        7


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL--------GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                      |....+++.+|.+|..+|++++|+.+|++++.+.....        ....|....+++.+|.+|...|++++|. ..|++
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~  146 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL  146 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence            88889999999999999999999999999998631100        0024567799999999999999999999 99999


Q ss_pred             HHHHhhh
Q 004848          711 LLDANSR  717 (727)
Q Consensus       711 al~~~p~  717 (727)
                      +++++|.
T Consensus       147 al~~~p~  153 (213)
T 1hh8_A          147 ATSMKSE  153 (213)
T ss_dssp             HHTTCCS
T ss_pred             HHHcCcc
Confidence            9999985

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.35  E-value=3.6e-10  Score=112.84  Aligned_cols=238  Identities=9%  Similarity=-0.002  Sum_probs=188.8

Q ss_pred             HHcCCHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          403 ETKGDHE-AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR----------YDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       403 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      ...|++. +|+.++.+++.      ..|....+|+..+.++...+.          +++++.++..++..        +|
T Consensus        40 ~~~~e~s~eaL~~t~~~L~------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~P  105 (331)
T 3dss_A           40 RQAGELDESVLELTSQILG------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NP  105 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CC
Confidence            3456655 78999988874      577788899999999888776          68889999999887        89


Q ss_pred             hHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHH
Q 004848          472 AVASVFVRLADMYNRTGK--LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYN  548 (727)
Q Consensus       472 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  548 (727)
                      ....+|...+.++...++  +++++.++.++++.         ++....+|...+.+....|. ++++++++.+++...+
T Consensus       106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A          106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence            999999999999999994  89999999999998         45557889999999999998 6999999999998866


Q ss_pred             hCCCCCccHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh-
Q 004848          549 DAPGQQSTVAGIEAQMGVMYYML--------------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-  613 (727)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-  613 (727)
                      ..       ..+|..++.++...              +.+++++.++.+++.+.        +....+|+.+..++... 
T Consensus       177 ~N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~~~~  241 (331)
T 3dss_A          177 SN-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGAGS  241 (331)
T ss_dssp             CC-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHSSS
T ss_pred             CC-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcc
Confidence            55       46888888888877              45888999999998862        22345666555554444 


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          614 ----------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---IGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       614 ----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                                +.++++++++.+++++        .|+...++..++.+...   .|..++...++.+.+++        +
T Consensus       242 ~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------D  305 (331)
T 3dss_A          242 GRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------D  305 (331)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------C
T ss_pred             CccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------C
Confidence                      4578999999999998        78877666666655433   57788999999999987        7


Q ss_pred             hhHHHHHHHHHHHH
Q 004848          681 PDVDDEKRRLAELL  694 (727)
Q Consensus       681 p~~~~~~~~La~~~  694 (727)
                      |....-|..|+.-+
T Consensus       306 p~r~~~y~d~~~~~  319 (331)
T 3dss_A          306 PMRAAYLDDLRSKF  319 (331)
T ss_dssp             GGGHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHH
Confidence            87776666665433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.34  E-value=1.6e-11  Score=122.32  Aligned_cols=194  Identities=15%  Similarity=0.075  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      +..+..+|..+...|++++|+.+|++++..        .|....++.++|.+|...|++++|+..+++++.+        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            467889999999999999999999999998        7888899999999999999999999999999987        


Q ss_pred             ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (727)
                       .+....+++.+|.+|..+|++++|+.+|++++.+.+..............    ..      .++.....    .....
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----~~------~~~~~~~~----~~~~~  132 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----RI------AKKKRWNS----IEERR  132 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----HH------HHHHHHHH----HHHTC
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----HH------HHHHHHHH----HHHHH
Confidence             34457789999999999999999999999999999876332222211111    11      11111111    11111


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 004848          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-GRLDDAIEILEFVVG  670 (727)
Q Consensus       592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  670 (727)
                      ... ..   .+...++.++  .|++++|++.|+++++.        +|........++.++... +.+++|..+|.++.+
T Consensus       133 ~~~-~~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          133 IHQ-ES---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             CCC-CC---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             Hhh-hH---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            111 12   2334445443  68999999999999987        788777778888777766 778889999988765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=3.4e-11  Score=103.71  Aligned_cols=122  Identities=14%  Similarity=0.125  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                      .+..+..+|..++..|++++|+.+|++++.+.        +....++..+|.++...|++++|+..|++++.+       
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            35678899999999999999999999999872        224689999999999999999999999999999       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE  696 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~  696 (727)
                       +|....+++.+|.++..+|++++|+..|++++.+.....  ..|....++..++.+..+
T Consensus        68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence             888899999999999999999999999999999853321  237777888888777654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=4.1e-11  Score=104.04  Aligned_cols=131  Identities=27%  Similarity=0.448  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      .+++.+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...        
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence            35788999999999999999999999887        56677889999999999999999999999999882        


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                       +....++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|..++++++..
T Consensus        66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence             2235678899999999999999999999999875433       467888999999999999999999998875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.34  E-value=3.9e-11  Score=120.25  Aligned_cols=247  Identities=11%  Similarity=0.023  Sum_probs=190.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKP  507 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  507 (727)
                      +....++..+..+....+..++|+.++.+++.+        +|....+|+..+.++...| .+++++.++++++..    
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence            445555666666666777778999999999998        8999999999999999999 599999999999987    


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhc-c-cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH--------HH
Q 004848          508 VPGVPPEEIASGLTDVSSIYESM-N-ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--------DS  577 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A  577 (727)
                           .|....+|+..+.++... + ++++++.++.+++...++.       ..+|...+.++...|.++        ++
T Consensus       119 -----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eE  186 (349)
T 3q7a_A          119 -----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSE  186 (349)
T ss_dssp             -----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence                 444577899999999887 7 8899999999988776555       478888888888888777        88


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004848          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (727)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  650 (727)
                      +.++.++++.        .+....+|+..+.++...++       ++++++++.+++.+        +|....+++.+..
T Consensus       187 Le~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~  250 (349)
T 3q7a_A          187 LDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRG  250 (349)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            9999988886        23345789999999998887       79999999999999        9999999999999


Q ss_pred             HHHHcCChHH------------HHH-HHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          651 TYDAIGRLDD------------AIE-ILEFVVGIREEKLGT-----ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       651 ~~~~~g~~~~------------A~~-~~~~al~~~~~~~g~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                      ++...|+...            .+. .+...........+.     ..+....++..|+.+|...|+.++|. +.++.+.
T Consensus       251 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~  329 (349)
T 3q7a_A          251 FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLS  329 (349)
T ss_dssp             HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Confidence            9998887511            000 011112222222221     12456778999999999999999999 9999886


Q ss_pred             -HHhh
Q 004848          713 -DANS  716 (727)
Q Consensus       713 -~~~p  716 (727)
                       +.||
T Consensus       330 ~~~dp  334 (349)
T 3q7a_A          330 SEYDQ  334 (349)
T ss_dssp             HTTCG
T ss_pred             hhhCh
Confidence             5565

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.32  E-value=3.4e-12  Score=120.04  Aligned_cols=170  Identities=12%  Similarity=0.069  Sum_probs=114.9

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC------
Q 004848          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK------  595 (727)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------  595 (727)
                      ..+......|++++|.+.+..........       +..+..+|.+++..|++++|+.+|.+++.+........      
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   81 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQS-------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD   81 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            34445555666666666665444333222       45677778888888888888888888877533211100      


Q ss_pred             --chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          596 --SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       596 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                        ......++.++|.++...|++++|+.+|++++.+        +|....+++.+|.+|..+|++++|+.+|++++.+  
T Consensus        82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--  151 (198)
T 2fbn_A           82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--
Confidence              0012478999999999999999999999999999        8888899999999999999999999999999987  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                            +|....++..++.++...|+..++....+..++..
T Consensus       152 ------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          152 ------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             ------STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             ------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  67788899999999999999888874455555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.32  E-value=4e-11  Score=125.46  Aligned_cols=122  Identities=8%  Similarity=0.035  Sum_probs=113.9

Q ss_pred             HhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004848          528 ESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (727)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (727)
                      ...|+|++|+.++++++++.....|..+ .++.++.++|.+|..+|+|++|+.++++++.+..+..+..++..+..+++|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3568999999999999999998878765 788899999999999999999999999999999999888899999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (727)
Q Consensus       607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (727)
                      |.+|..+|++++|+.+|++|+++....+|++||.+..+..+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999999999999999988777664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=6.3e-11  Score=107.41  Aligned_cols=141  Identities=13%  Similarity=0.113  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (727)
                      ..+..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+.     
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----   77 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            34677889999999999999999999999998        67788999999999999999999999999999983     


Q ss_pred             CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (727)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (727)
                          +....++..+|.++...|++++|+.+|++++.+.+..     .....+..++..+...|++++|+.++.++..+..
T Consensus        78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence                3346789999999999999999999999999886543     1223335566668899999999999999988776


Q ss_pred             HhC
Q 004848          590 AIG  592 (727)
Q Consensus       590 ~~~  592 (727)
                      ...
T Consensus       149 ~~~  151 (166)
T 1a17_A          149 SLD  151 (166)
T ss_dssp             HCC
T ss_pred             ccc
Confidence            543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.32  E-value=1.7e-11  Score=110.94  Aligned_cols=132  Identities=16%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---C-------chhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER---K-------SAFFGVALNQMGLACVQRYSINEAVELFEE  625 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  625 (727)
                      ..+..+..+|..++..|+|++|+.+|.+++.++......   .       .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            456778899999999999999999999999986654211   0       234567999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHhCChhHH
Q 004848          626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD-DEKRRLAELLKEAGRVRSR  703 (727)
Q Consensus       626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~-~~~~~La~~~~~~g~~~~A  703 (727)
                      ++.+        +|....+++.+|.+|..+|++++|+..|++++.+        +|.+. .+...|+.+....++..+.
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999        8999999999999999999999999999999988        67776 6677777777666554443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.32  E-value=6.2e-12  Score=118.23  Aligned_cols=166  Identities=14%  Similarity=0.080  Sum_probs=121.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCcc-
Q 004848          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-  556 (727)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  556 (727)
                      ...+......|++++|...+......         .+..+..+..+|.++...|++++|+.+|++++.+.+..+..... 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   78 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI   78 (198)
T ss_dssp             --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence            34455666677788777777655444         44567789999999999999999999999999987665322111 


Q ss_pred             --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          557 --------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (727)
Q Consensus       557 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (727)
                              ...++.++|.+|...|++++|+.++++++.+.        +....+++.+|.++...|++++|+.+|++++.
T Consensus        79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                    13688999999999999999999999999872        22467899999999999999999999999999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 004848          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI-EILEFV  668 (727)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  668 (727)
                      +        +|....++..++.++..+++..++. ..|.+.
T Consensus       151 ~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          151 L--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             H--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9        8888889999999999998887776 344433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.31  E-value=2.8e-12  Score=127.81  Aligned_cols=195  Identities=12%  Similarity=0.031  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      +..+..+|..++..|+|++|+..|++++...     +.++    .++..+|.+|..+|++++|+..|++++++       
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~-------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            5678899999999999999999999999885     3333    35899999999999999999999999988       


Q ss_pred             CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004848          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  424 (727)
                       +|....+++.+|.+|...|++++|+.+|++++.+.|........   .++..+  .      ..++..+.....   ..
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~---~~~~~~--~------~~~~~~~~~~~~---~~  132 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD---DIPSAL--R------IAKKKRWNSIEE---RR  132 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS---HHHHHH--H------HHHHHHHHHHHH---TC
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH---HHHHHH--H------HHHHHHHHHHHH---HH
Confidence             78889999999999999999999999999999999976433111   011111  1      111111111111   11


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004848          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRI  503 (727)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  503 (727)
                      ....+.   +...++.++  .|++++|+..++++++.        .|........++.++... +.+++|..+|.++.+.
T Consensus       133 ~~~~~~---i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          133 IHQESE---LHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             CCCCCH---HHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HhhhHH---HHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            222333   233344443  68999999999999887        677677777777777766 6788888888887653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=3.1e-11  Score=103.99  Aligned_cols=102  Identities=16%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .+..+..+|..+...|++++|+.+|++++.+        +|....++.++|.+|..+|++++|+..|++++.+       
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            4578899999999999999999999999999        8888899999999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                       +|....+++.+|.++...|++++|+ ..|+++++++|+
T Consensus        68 -~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~  104 (126)
T 3upv_A           68 -DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKDAE  104 (126)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHhCcc
Confidence             6888899999999999999999999 999999999954

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.31  E-value=3.2e-11  Score=126.57  Aligned_cols=131  Identities=12%  Similarity=0.019  Sum_probs=120.9

Q ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHH
Q 004848          525 SIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (727)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (727)
                      .-+..+|++++|+..+++++++.....+..+ .++.++.++|.+|..+|+|++|+.++++++.+.....+..++..+..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455789999999999999999887777654 778899999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (727)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (727)
                      ++||.+|..+|++++|+.+|++|++++....|++||.+..++.+|+.+...+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.30  E-value=2.8e-12  Score=137.22  Aligned_cols=161  Identities=16%  Similarity=0.190  Sum_probs=131.3

Q ss_pred             hcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-------CchhHHH
Q 004848          529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-------KSAFFGV  601 (727)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  601 (727)
                      .++++++|+..|+.++...+..       +..+..+|.+++..|+|++|+.+|++++.+.......       .......
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  318 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA  318 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence            4567777877777777765544       6788999999999999999999999999975432110       0112367


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      +|.++|.+|..+|++++|+.+|++++.+        +|....+++++|.+|..+|++++|+.+|++++++        +|
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P  382 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP  382 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence            8999999999999999999999999999        8889999999999999999999999999999976        68


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                      .+..++..|+.++...|++++|....+.+++
T Consensus       383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          383 QNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999988744555444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.30  E-value=8.9e-11  Score=102.64  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG----ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      .+..+..+|..++..|+|++|+..|++++++......    ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4567788999999999999999999999998432100    001224559999999999999999999999999999554


Q ss_pred             CCCCCChHhHHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHH
Q 004848          507 PVPGVPPEEIASGL----TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (727)
Q Consensus       507 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (727)
                      .  +.-.|....+|    +++|.++..+|++++|+..|++++++.+...+....+..+
T Consensus        90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3  23345567778    9999999999999999999999999999887666555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.29  E-value=3.8e-11  Score=105.90  Aligned_cols=104  Identities=11%  Similarity=0.080  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      +.....++.+|.++...|++++|+.+|++++..        +|....+++.+|.+|...|++++|+.+|++++.+     
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----   81 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----   81 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            445678899999999999999999999999998        8988999999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                         +|....+++.+|.+|...|++++|+ ..|+++++++|.
T Consensus        82 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  118 (142)
T 2xcb_A           82 ---DINEPRFPFHAAECHLQLGDLDGAE-SGFYSARALAAA  118 (142)
T ss_dssp             ---CTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHT
T ss_pred             ---CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence               5777889999999999999999999 999999999996

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.29  E-value=4.5e-11  Score=108.40  Aligned_cols=104  Identities=24%  Similarity=0.275  Sum_probs=98.6

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      ...+..+..+|.++...|++++|+.+|++++.+        +|....+++++|.+|..+|++++|+.+|++++.+     
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----   74 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----   74 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            346788999999999999999999999999999        8888999999999999999999999999999988     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                         +|....+++.+|.+|..+|++++|+ .+|+++++++|+
T Consensus        75 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  111 (164)
T 3sz7_A           75 ---DPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGN  111 (164)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSS
T ss_pred             ---CCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence               6888999999999999999999999 999999999997

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.28  E-value=3.7e-11  Score=114.21  Aligned_cols=142  Identities=19%  Similarity=0.186  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (727)
Q Consensus       391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (727)
                      .+..++.+|.++...|++++|+.+|.+++      .  + ...+++.+|.+|...|++++|+.+|++++.+        .
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ------D--P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS------S--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc------C--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            34568899999999999999999999874      1  1 3568999999999999999999999999998        6


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC-------CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-------PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (727)
                      |....++..+|.+|...|++++|+.+|++++.+.....       .....+....++..+|.++...|++++|+.+|+++
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            88889999999999999999999999999999754310       00023455688999999999999999999999999


Q ss_pred             HHHHHh
Q 004848          544 LKIYND  549 (727)
Q Consensus       544 l~~~~~  549 (727)
                      +.+.+.
T Consensus       148 l~~~p~  153 (213)
T 1hh8_A          148 TSMKSE  153 (213)
T ss_dssp             HTTCCS
T ss_pred             HHcCcc
Confidence            987553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.28  E-value=6.3e-11  Score=102.80  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=109.6

Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  633 (727)
                      .+.....+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++..    
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----   79 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL----   79 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence            34567889999999999999999999999998751        223678999999999999999999999999998    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (727)
                          .|....++..+|.++...|++++|+.+|++++.+        +|....++..++.++..+|+
T Consensus        80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                7888889999999999999999999999999987        68888899999999998875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.27  E-value=2.4e-11  Score=103.66  Aligned_cols=99  Identities=18%  Similarity=0.121  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      .++.+|.++...|++++|+..|++++..        +|....+++.+|.++...|++++|+..|++++++        +|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4678899999999999999999999999        8999999999999999999999999999999988        68


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +...++..||.+|...|++++|+ ..|+++++++|.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~  117 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQ  117 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcC
Confidence            88899999999999999999999 999999999986

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.27  E-value=1.6e-10  Score=115.79  Aligned_cols=241  Identities=11%  Similarity=-0.035  Sum_probs=185.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhCC
Q 004848          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGE  344 (727)
Q Consensus       266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~  344 (727)
                      .++..+..+....+..++|+.++.+++.+.     +++.    .+|+..+.++..+| .+++++.++.+++..       
T Consensus        55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-----P~~y----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~-------  118 (349)
T 3q7a_A           55 DAMDYFRAIAAKEEKSERALELTEIIVRMN-----PAHY----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-------  118 (349)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-----chhH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-------
Confidence            334444444555566789999999999986     4443    35899999999999 599999999999988       


Q ss_pred             CCchHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHH--------HHHHH
Q 004848          345 TDPRVGETCRYLAEAHVQA-L-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHE--------AALEH  414 (727)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~--------~A~~~  414 (727)
                       +|....+|...+.++... + ++++++.++.+++...+++.        .+|...+.+....|.++        +++++
T Consensus       119 -nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy--------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~  189 (349)
T 3q7a_A          119 -NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY--------HTWAYLHWLYSHFSTLGRISEAQWGSELDW  189 (349)
T ss_dssp             -TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH--------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence             799999999999999988 7 89999999999998877663        67888888888888877        89999


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004848          415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT  487 (727)
Q Consensus       415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  487 (727)
                      +.+++.      .++....+|+..+.++...++       ++++++++.+++.+        +|....+|+.+..++...
T Consensus       190 ~~k~I~------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~~  255 (349)
T 3q7a_A          190 CNEMLR------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKHF  255 (349)
T ss_dssp             HHHHHH------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHH------hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence            998876      366677899999999999987       79999999999998        899999999999999888


Q ss_pred             CChHH------------HHH-HHHHHHHHHhcCCCCC----ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          488 GKLRE------------SKS-YCENALRIYEKPVPGV----PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       488 g~~~~------------A~~-~~~~al~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                      |+...            .+. .+......+.......    .......++..|+.+|...|+.++|.++|+...+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            76510            000 0112222222222111    1134566888999999999999999999988643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.26  E-value=1.5e-10  Score=99.94  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=108.8

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      .....+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.++++++..      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   75 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI------   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence            345778899999999999999999999999862        223578999999999999999999999999998      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChh
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR  701 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~  701 (727)
                        .|....++..+|.++...|++++|+.+|++++.+        .|....++..++.++...|+++
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred             --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence              7887889999999999999999999999999987        5777789999999999999863

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.25  E-value=7.2e-11  Score=107.06  Aligned_cols=104  Identities=17%  Similarity=0.078  Sum_probs=94.8

Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                      .....+..+..+|.++...|++++|+.+|++++.+.        +....++..+|.+|...|++++|+.+|++++.+   
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---   74 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---   74 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence            344567889999999999999999999999999872        224679999999999999999999999999999   


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                           +|....+++.+|.+|..+|++++|+.+|++++.+.
T Consensus        75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                 88889999999999999999999999999999984

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=2e-11  Score=112.39  Aligned_cols=125  Identities=10%  Similarity=0.108  Sum_probs=109.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004848          568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (727)
Q Consensus       568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  647 (727)
                      +...|++++|+..|++++...        +....++..+|.++...|++++|+.+|++++.+        .|....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence            456789999999999998862        223578999999999999999999999999998        6777889999


Q ss_pred             HHHH-HHHcCCh--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          648 LAGT-YDAIGRL--DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       648 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +|.+ +...|++  ++|+.+|++++.+        +|....+++.+|.+|...|++++|+ ..|+++++++|.
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  147 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCC
Confidence            9999 8899999  9999999999987        5777889999999999999999999 999999999997

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.25  E-value=1.6e-10  Score=101.79  Aligned_cols=108  Identities=10%  Similarity=0.024  Sum_probs=98.1

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      ...|.....++.+|.++...|++++|+.+|++++..        .|....+|..+|.+|...|++++|+.+|++++.+  
T Consensus        12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   81 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--   81 (142)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            356788889999999999999999999999999998        7888999999999999999999999999999999  


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                             .|....+++.+|.+|..+|++++|+.+|++++.+.+..
T Consensus        82 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           82 -------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             -------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                   33445678999999999999999999999999998865

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.22  E-value=2.7e-10  Score=98.22  Aligned_cols=124  Identities=23%  Similarity=0.227  Sum_probs=109.9

Q ss_pred             ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004848          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (727)
                      ..+.....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++...   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---   76 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICID---   76 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---
Confidence            356678899999999999999999999999999885543       5688999999999999999999999999862   


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 004848          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL  658 (727)
Q Consensus       592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  658 (727)
                           +....++..+|.++...|++++|+.+|++++.+        .|....++..++.++...|++
T Consensus        77 -----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           77 -----PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             -----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence                 223578999999999999999999999999998        788888999999999999876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.22  E-value=2.1e-10  Score=99.40  Aligned_cols=122  Identities=13%  Similarity=0.097  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (727)
Q Consensus       261 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  340 (727)
                      .+....++..+|.++...|++++|+.+|++++...     +.+    ..++..+|.++...|++++|+.+|+++++.   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---   79 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKD----AKLYSNRAACYTKLLEFQLALKDCEECIQL---   79 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence            36678889999999999999999999999999875     333    335899999999999999999999999998   


Q ss_pred             HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC
Q 004848          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD  407 (727)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~  407 (727)
                           .|....++..+|.++...|++++|+.+|++++...+...        .++..++.++...|+
T Consensus        80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--------~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK--------EAADGYQRCMMAQYN  133 (133)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT--------HHHHHHHHHHHHHTC
T ss_pred             -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHhcC
Confidence                 678889999999999999999999999999999887653        457888888877664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.22  E-value=1.8e-10  Score=104.18  Aligned_cols=126  Identities=17%  Similarity=0.084  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004848          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAEVASVDCSIGDTYLSLSRYDEAGFAYQK  457 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  457 (727)
                      ..+..+..+|..++..|+|++|+.+|.+++.+......            .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            44677999999999999999999999999987543211            466778999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH-HHHHHHHHHHHhccc
Q 004848          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA-SGLTDVSSIYESMNE  532 (727)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~  532 (727)
                      ++.+        +|....+++.+|.+|..+|++++|+..|++++.+         .|... .+...++.+....++
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------HPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHH
Confidence            9999        7889999999999999999999999999999999         23333 445555555544433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.22  E-value=1.2e-10  Score=101.78  Aligned_cols=102  Identities=14%  Similarity=0.061  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .+..+..+|.++...|++++|+.+|++++..        +|....++..+|.++..+|++++|+.+|++++.+       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3678999999999999999999999999999        8888899999999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                       +|....+++.+|.++...|++++|+ ..|+++++++|.
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~  109 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE  109 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHChh
Confidence             5778889999999999999999999 999999999997

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.19  E-value=6.3e-10  Score=94.96  Aligned_cols=118  Identities=23%  Similarity=0.406  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                      ...++..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++..       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence            35678899999999999999999999998762        123568899999999999999999999999998       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                       .|....++..+|.++...|++++|+.+|++++.+        +|....++..++.++...|
T Consensus        73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence             6777889999999999999999999999999987        5777888999999988765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.18  E-value=7.6e-11  Score=126.10  Aligned_cols=160  Identities=13%  Similarity=0.140  Sum_probs=125.9

Q ss_pred             ccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHHH
Q 004848          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIAA  273 (727)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~~~~la~  273 (727)
                      ..++..+++.+.......|..+..+..+|..++..|+ |++|+.+|.+|+.+.+......      ..+....++.++|.
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3345556656666666778899999999999999997 9999999999999864321000      01233688999999


Q ss_pred             HHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004848          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (727)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (727)
                      +|..+|+|++|+.+|++++.+.     +.+    ..+++++|.+|..+|++++|+..|++++++        +|....++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~-----p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~  388 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLD-----SAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAAR  388 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-----Ccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            9999999999999999999985     333    345999999999999999999999999998        78888999


Q ss_pred             HHHHHHHHHhcCHHHHHHH-HHHHH
Q 004848          354 RYLAEAHVQALQFSEAQKF-CQMAL  377 (727)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~-~~~al  377 (727)
                      ..++.++...+++++|... |.+++
T Consensus       389 ~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          389 LQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888743 44443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.18  E-value=8.5e-11  Score=108.09  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=104.5

Q ss_pred             HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004848          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (727)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (727)
                      +...|++++|+..+++++...+..       ..++..+|.+|...|++++|+.+|++++.+..        ....++..+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l   84 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--------ENAELYAAL   84 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--------SCHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHH
Confidence            346789999999999999886544       47889999999999999999999999998742        125688899


Q ss_pred             HHH-HHHhCCH--HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          607 GLA-CVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       607 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      |.+ +...|++  ++|+.+|++++..        +|....+++.+|.+|...|++++|+.+|++++.+
T Consensus        85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            999 8899999  9999999999998        7888889999999999999999999999999976

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.16  E-value=3.4e-10  Score=98.88  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004848          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                      .+..+..+|.++...|++++|+.+|++++.+.        +....++..+|.++...|++++|+.+|++++.+       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            35788999999999999999999999999872        224578999999999999999999999999999       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                       +|....+++.+|.+|...|++++|+.+|++++.+..
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence             888889999999999999999999999999999864

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.16  E-value=1.9e-09  Score=105.83  Aligned_cols=259  Identities=11%  Similarity=0.034  Sum_probs=169.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004848          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (727)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (727)
                      .-.+..|+|..++.-..+.      ....+.  .....+.++|..+|++....               .+.|. ..+...
T Consensus        21 kn~fy~G~yq~~i~e~~~~------~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~   76 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKF------SKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL   76 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTS------SCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHhc------CccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence            3456689999888743211      122233  34555677888888876421               12332 233444


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004848          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (727)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (727)
                      ++..+.  ++   |+..+++.+..      +...   ...+..+|.++...|++++|+.++.+.+...+     ......
T Consensus        77 la~~~~--~~---a~~~l~~l~~~------~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le  137 (310)
T 3mv2_B           77 YVQFLD--TK---NIEELENLLKD------KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE  137 (310)
T ss_dssp             HHHHHT--TT---CCHHHHHTTTT------SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred             HHHHhc--cc---HHHHHHHHHhc------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence            444432  22   66666665433      1111   23456899999999999999999999865321     123457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHHHHHhC--CHHHHHHHHHHHHHHHHHhcC
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM--GLACVQRY--SINEAVELFEEARSILEQECG  635 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~  635 (727)
                      ++..++.++..+|+.+.|.+.++++.+..+.    .......++..+  |++.+..|  ++.+|..+|+++.+.      
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d----~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~------  207 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNAIED----TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT------  207 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc----ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh------
Confidence            7888999999999999999999988765110    000011233444  44466667  999999999998765      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT--ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                        .|+.......+. ++..+|++++|...++.+++..-.+-..  .+|+++.++.+++.+....|+  +|. ++++++.+
T Consensus       208 --~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l~~qL~~  281 (310)
T 3mv2_B          208 --FPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DLTNQLVK  281 (310)
T ss_dssp             --SCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HHHHHHHH
T ss_pred             --CCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HHHHHHHH
Confidence              565222222223 8999999999999999777653110000  036788999999999999998  888 99999999


Q ss_pred             Hhhh
Q 004848          714 ANSR  717 (727)
Q Consensus       714 ~~p~  717 (727)
                      .+|+
T Consensus       282 ~~P~  285 (310)
T 3mv2_B          282 LDHE  285 (310)
T ss_dssp             TTCC
T ss_pred             hCCC
Confidence            9997

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.15  E-value=2e-10  Score=118.88  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG--------ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                      ..+..+|..++..|++++|+.+|++++.+.....        ....+....++.++|.+|..+|++++|+.+|++++++ 
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence            3466789999999999999999999999765421        0013446789999999999999999999999999998 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                             +|....+++.+|.+|..+|++++|+.+|++++++        .|....++..|+.++...++++++.
T Consensus       303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                   8888999999999999999999999999999987        5777889999999999999999887

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.15  E-value=1.3e-11  Score=132.62  Aligned_cols=177  Identities=16%  Similarity=0.128  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004848          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (727)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (727)
                      ..+..+..+|.++...|++++|+.+|++++++.+..       ..++.++|.+|..+|++++|+.+|++++++       
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------   69 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL-------   69 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            345567788899999999999999999999986554       678999999999999999999999999986       


Q ss_pred             CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHcCChHHHHHHHH------
Q 004848          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT--YDAIGRLDDAIEILE------  666 (727)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~------  666 (727)
                       .+....++.++|.+|..+|++++|+.+|++++++        +|....++..++.+  +..+|++++|+..++      
T Consensus        70 -~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~  140 (477)
T 1wao_1           70 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  140 (477)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence             2334678999999999999999999999999998        67777788888888  889999999999999      


Q ss_pred             -----HHHHHHHHhcCCCChh---HHHHHHHHHHHHHHhCChhHHHH-HHHHHHHHH
Q 004848          667 -----FVVGIREEKLGTANPD---VDDEKRRLAELLKEAGRVRSRKA-QSLETLLDA  714 (727)
Q Consensus       667 -----~al~~~~~~~g~~~p~---~~~~~~~La~~~~~~g~~~~A~~-~~l~~al~~  714 (727)
                           +++.+.....++.++.   .......+...+...+...+... ..+.++.++
T Consensus       141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~ei  197 (477)
T 1wao_1          141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEV  197 (477)
T ss_dssp             TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence                 6666554444555554   23334445555555555544330 344554444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.13  E-value=2.4e-09  Score=105.15  Aligned_cols=263  Identities=11%  Similarity=-0.016  Sum_probs=169.4

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004848          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (727)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (727)
                      -.+..|+|..++.-..   .+.+.    . ..  .....+.++|..+|++....             ...+.. .+...+
T Consensus        22 n~fy~G~yq~~i~e~~---~~~~~----~-~~--~~~~~~~Rs~iAlg~~~~~~-------------~~~~~~-~a~~~l   77 (310)
T 3mv2_B           22 QNYYTGNFVQCLQEIE---KFSKV----T-DN--TLLFYKAKTLLALGQYQSQD-------------PTSKLG-KVLDLY   77 (310)
T ss_dssp             HHHTTTCHHHHTHHHH---TSSCC----C-CH--HHHHHHHHHHHHTTCCCCCC-------------SSSTTH-HHHHHH
T ss_pred             HHHHhhHHHHHHHHHH---hcCcc----c-hH--HHHHHHHHHHHHcCCCccCC-------------CCCHHH-HHHHHH
Confidence            4567899988887332   12111    1 11  34667778888888876421             223322 233333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      +..+ . ++   |+..+++.+..        .+....++..+|.++...|++++|+.++.+.+..      +. ......
T Consensus        78 a~~~-~-~~---a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~-~~~~le  137 (310)
T 3mv2_B           78 VQFL-D-TK---NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDN------DE-AEGTTE  137 (310)
T ss_dssp             HHHH-T-TT---CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SC-STTHHH
T ss_pred             HHHh-c-cc---HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CC-CcCcHH
Confidence            4333 2 22   66666665542        1222445579999999999999999999998654      11 134577


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhCCC
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLG--NYSDSYDSFKNAISKLRAIGER  594 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~  594 (727)
                      ++..++.++..+|+.+.|.+.++++.+..++..   ..--.++..+  +++....|  ++.+|..+|+++.+..      
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~---~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------  208 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV---SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------  208 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc---ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------
Confidence            888999999999999999999999877654100   0000233344  44466667  9999999999975531      


Q ss_pred             CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY--HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      ........+.+   ++..+|++++|...++.+++..-.....+  +|+.+.++.+++.+...+|+  +|.+++.++.+..
T Consensus       209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            01111223333   89999999999999997776532210100  26778899999999999998  8889999988763


Q ss_pred             HHhcCCCChhHH
Q 004848          673 EEKLGTANPDVD  684 (727)
Q Consensus       673 ~~~~g~~~p~~~  684 (727)
                           |+||...
T Consensus       284 -----P~hp~i~  290 (310)
T 3mv2_B          284 -----HEHAFIK  290 (310)
T ss_dssp             -----CCCHHHH
T ss_pred             -----CCChHHH
Confidence                 5555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.13  E-value=9.5e-10  Score=92.78  Aligned_cols=113  Identities=18%  Similarity=0.135  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      +..+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.++++++..        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            4678899999999999999999999999862        223578999999999999999999999999998        


Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      .|....++..+|.++...|++++|+.+|++++.+        +|....++..++.+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence            7888889999999999999999999999999965        577777888877764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.12  E-value=1.6e-09  Score=92.36  Aligned_cols=118  Identities=22%  Similarity=0.351  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004848          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (727)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (727)
                      ...++..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++...       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------   73 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------   73 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------
Confidence            46788999999999999999999999999875433       4678899999999999999999999998762       


Q ss_pred             chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004848          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (727)
Q Consensus       596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  656 (727)
                       +....++..+|.++...|++++|+.+|++++..        +|....++..++.++...|
T Consensus        74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence             123468889999999999999999999999998        7888889999999987765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.12  E-value=1.6e-09  Score=93.37  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (727)
                      .++.+|.++...|++++|+..|++++...+     .......++..+|.++...|++++|+.+|++++..        .|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p   70 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--------YP   70 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------CC
Confidence            467889999999999999999999988632     23334578999999999999999999999999998        55


Q ss_pred             cH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          640 DT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       640 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      +.   ..+++.+|.+|..+|++++|+.+|++++..
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55   889999999999999999999999999987

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=4.8e-10  Score=95.53  Aligned_cols=100  Identities=13%  Similarity=0.038  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      .++.+|..+...|++++|+..|++++..        .|....+++.+|.++...|++++|+..|++++++         .
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C
Confidence            4678899999999999999999999998        8999999999999999999999999999999999         4


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      |....++..+|.++...|++++|+..|++++++.+..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            4456789999999999999999999999999887643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.11  E-value=1e-10  Score=119.66  Aligned_cols=142  Identities=11%  Similarity=0.082  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CC-------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE--RK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      ..+..+|..++..|+|++|+.+|++++.+......  ..       ......++.++|.+|..+|++++|+.+|++++.+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45677899999999999999999999987322100  00       0001138999999999999999999999999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHhCChhHHHHHHH
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVRSRKAQSL  708 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~-~~~g~~~~A~~~~l  708 (727)
                              +|....+++++|.+|..+|++++|+.+|++++++        +|....++..|+.+. ...+..+.+. ..|
T Consensus       260 --------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~-~~~  322 (338)
T 2if4_A          260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK-EMY  322 (338)
T ss_dssp             --------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                    8888999999999999999999999999999976        578888999999884 4556777788 999


Q ss_pred             HHHHHHhhh
Q 004848          709 ETLLDANSR  717 (727)
Q Consensus       709 ~~al~~~p~  717 (727)
                      .+++...|.
T Consensus       323 ~~~l~~~p~  331 (338)
T 2if4_A          323 KGIFKGKDE  331 (338)
T ss_dssp             ---------
T ss_pred             HHhhCCCCC
Confidence            999999987

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=6.2e-10  Score=96.02  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      +++.+|.++...|++++|+..|++++..     .|+++....+++.+|.++...|++++|+.+|++++...     +.++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence            5678899999999999999999999987     23344444799999999999999999999999999863     4444


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ....+++.+|.++...|++++|+ ..|++++..+|+
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~  108 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQYPG  108 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCC
Confidence            44889999999999999999999 999999999987

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=1.2e-09  Score=92.05  Aligned_cols=101  Identities=24%  Similarity=0.275  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      +..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            467889999999999999999999999998        7878889999999999999999999999999987        


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .|....++..+|.++...|++++|. ..|+++++.+|.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~  104 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEAN  104 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCC
Confidence            5777889999999999999999999 999999999886

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.09  E-value=1.1e-09  Score=113.15  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAN----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (727)
                      ..+..+|..+...|++++|+..|++++.+....          ...+....++.++|.+|..+|++++|+.++++++++ 
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence            457889999999999999999999999865442          146777899999999999999999999999999997 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHH
Q 004848          463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (727)
Q Consensus       463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (727)
                             .|....+++.+|.+|..+|++++|+.+|++++++         .|....++..++.++..+++++++...
T Consensus       303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---------~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   7888999999999999999999999999999999         333466788899999999988877643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.09  E-value=1.8e-11  Score=131.45  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      ..+..+|.++...|++++|+.+|++++++        .+....++.++|.++..+|++++|+.+|++++++        +
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~   70 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   70 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence            44566788899999999999999999987        2234689999999999999999999999999998        8


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHhCChhHHHHHHHH-------
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL--LKEAGRVRSRKAQSLE-------  709 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~--~~~~g~~~~A~~~~l~-------  709 (727)
                      |....+++++|.+|..+|++++|+.+|++++++        +|....++..++.+  +..+|++++|+ ..++       
T Consensus        71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~~~~~~~~  141 (477)
T 1wao_1           71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSVVD  141 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC-------CCSTTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHh-ccccccchhHh
Confidence            888999999999999999999999999999987        56666778888888  88999999999 9998       


Q ss_pred             ----HHHHHhhh
Q 004848          710 ----TLLDANSR  717 (727)
Q Consensus       710 ----~al~~~p~  717 (727)
                          +++.++|.
T Consensus       142 ~~~~~al~~~~~  153 (477)
T 1wao_1          142 SLDIESMTIEDE  153 (477)
T ss_dssp             CCTTSSCCCCTT
T ss_pred             hhhhhhcccccc
Confidence                66666665

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.08  E-value=1.5e-09  Score=93.45  Aligned_cols=123  Identities=14%  Similarity=0.109  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      +..+..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++....... ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~   74 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-hh
Confidence            5678899999999999999999999999862        22357889999999999999999999999999854321 11


Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                      .+....+++.+|.+|...|++++|+.+|++++.+        .| .......++.++...+
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHH
Confidence            2222779999999999999999999999999986        33 2556667777666544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.07  E-value=1e-07  Score=102.36  Aligned_cols=372  Identities=9%  Similarity=-0.006  Sum_probs=224.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHH
Q 004848          235 GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL  314 (727)
Q Consensus       235 g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  314 (727)
                      |.+...|...|++++..++         .               |+++.+..+|++++...     + .    ...|...
T Consensus         8 ~~~i~~aR~vyer~l~~~P---------~---------------~~~e~~~~iferal~~~-----p-s----~~LW~~Y   53 (493)
T 2uy1_A            8 GVELSSPSAIMEHARRLYM---------S---------------KDYRSLESLFGRCLKKS-----Y-N----LDLWMLY   53 (493)
T ss_dssp             ----CCHHHHHHHHHHHHH---------T---------------TCHHHHHHHHHHHSTTC-----C-C----HHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHCC---------C---------------CCHHHHHHHHHHHhccC-----C-C----HHHHHHH
Confidence            4236778888888888763         1               78999999999999864     2 1    2235544


Q ss_pred             HHHHHHhCC-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848          315 GDTYAMLGQ-LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----QALQFSEAQKFCQMALDIHKDNGSPASL  389 (727)
Q Consensus       315 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (727)
                      .......+. .+.....|+.++...    |. ++....+|...+..+.    ..++.+.+...|++++.. |..    ..
T Consensus        54 ~~f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~~  123 (493)
T 2uy1_A           54 IEYVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----SL  123 (493)
T ss_dssp             HHHHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----TH
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----hH
Confidence            444444443 345566777777652    22 3445566766666543    356788999999999873 211    11


Q ss_pred             HHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC---------
Q 004848          390 EEAADRRLMGLI-------------CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR---------  447 (727)
Q Consensus       390 ~~a~~~~~l~~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---------  447 (727)
                      .  ..|......             -.....+..|...|..+.......  .   ...|......  ..++         
T Consensus       124 ~--~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~--s---~~~W~~y~~~--E~~~~~~~~~~~~  194 (493)
T 2uy1_A          124 S--ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW--S---VKNAARLIDL--EMENGMKLGGRPH  194 (493)
T ss_dssp             H--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--S---HHHHHHHHHH--HHTCTTCCCHHHH
T ss_pred             H--HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc--c---HHHHHHHHHH--HhcCCccCcchhh
Confidence            1  111111111             112233445555555554433221  1   1233333222  2222         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004848          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (727)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (727)
                      .......|++++..        .|.....|...+..+...|+.++|...|++|+.. ...     .    ..+...+.. 
T Consensus       195 ~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~~y~~~-  255 (493)
T 2uy1_A          195 ESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSLYYGLV-  255 (493)
T ss_dssp             HHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHHHHHhh-
Confidence            34567788888886        5677889999999999999999999999999998 331     1    122222222 


Q ss_pred             HhcccHHHHHHHHHHHHHHH---HhCCC---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004848          528 ESMNELEQAIKLLQKALKIY---NDAPG---QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (727)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (727)
                      ...++   .   ++......   ....+   .......+|...+..+...++.+.|...|.+| ..    ...    ...
T Consensus       256 ~e~~~---~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~~----~~~  320 (493)
T 2uy1_A          256 MDEEA---V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EGV----GPH  320 (493)
T ss_dssp             TTCTH---H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SCC----CHH
T ss_pred             cchhH---H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CCC----ChH
Confidence            11111   1   22222111   10000   11123356777788887888999999999998 21    111    134


Q ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004848          602 ALNQMGLACVQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN  680 (727)
Q Consensus       602 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~  680 (727)
                      +|...|.+....+ +++.|..+|+.+++.        .|+....+...+......|+.+.|..+|+++.           
T Consensus       321 v~i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----------  381 (493)
T 2uy1_A          321 VFIYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----------  381 (493)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----------
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence            5555666666555 699999999999987        34444455667788889999999999999872           


Q ss_pred             hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                       .....+......-...|+.+.+. ..+++++..
T Consensus       382 -k~~~lw~~~~~fE~~~G~~~~~r-~v~~~~~~~  413 (493)
T 2uy1_A          382 -KTSRMWDSMIEYEFMVGSMELFR-ELVDQKMDA  413 (493)
T ss_dssp             -CBHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH
Confidence             12455666666777789999998 888888864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.7e-09  Score=95.62  Aligned_cols=119  Identities=13%  Similarity=0.133  Sum_probs=102.1

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      ..+..+..+|..+...|++++|+.+|++++...     ........++..+|.++...|++++|+.+|++++.+      
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   94 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------   94 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence            346788999999999999999999999998752     122224788999999999999999999999999998      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (727)
                        +|....+++.+|.++..+|++++|+.+|++++.+        +|....++..++.+..
T Consensus        95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG  144 (148)
T ss_dssp             --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred             --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence              7888889999999999999999999999999987        5666677777776654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.05  E-value=2e-09  Score=92.71  Aligned_cols=109  Identities=12%  Similarity=0.229  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .+..+..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+.... +.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            3567899999999999999999999999998        77788899999999999999999999999999885321 12


Q ss_pred             CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+....+++.+|.++...|++++|. .+|+++++.+|+
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~  111 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRT  111 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence            22333889999999999999999999 999999998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.04  E-value=2.3e-09  Score=117.04  Aligned_cols=177  Identities=9%  Similarity=0.051  Sum_probs=156.2

Q ss_pred             HcCC-hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHhCCCCC
Q 004848          486 RTGK-LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE----------LEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       486 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      ..|+ .++|+..+.+++.+         .|....+|+..+.++...|+          +++|+.++++++...++.    
T Consensus        40 ~~~~~~eeal~~~~~~l~~---------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----  106 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA---------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----  106 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred             HcCCCCHHHHHHHHHHHHH---------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence            3444 46789999999999         56668899999999999998          999999999999988776    


Q ss_pred             ccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Q 004848          555 STVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-SINEAVELFEEARSILE  631 (727)
Q Consensus       555 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  631 (727)
                         ..+|+..+.++...+  ++++|+.++.+++++        ++....+|...+.+....| .++++++++.++++.  
T Consensus       107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--  173 (567)
T 1dce_A          107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (567)
T ss_dssp             ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence               589999999999999  779999999999997        2334678999999999999 999999999999998  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAI--------------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                            +|....+|..++.++...              +.+++|++++.+|+.+        +|++..+|+.++.++...
T Consensus       174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred             ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence                  899999999999999885              5679999999999987        688889999999999999


Q ss_pred             CChhH
Q 004848          698 GRVRS  702 (727)
Q Consensus       698 g~~~~  702 (727)
                      +++++
T Consensus       240 ~~~~~  244 (567)
T 1dce_A          240 EPHDV  244 (567)
T ss_dssp             CCCSC
T ss_pred             CCccc
Confidence            88766

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.1e-09  Score=95.05  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      ....+..+|..+...|++++|+.+|++++..        .|+.   ..++..+|.+|...|++++|+.++++++.+    
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            4678899999999999999999999999987        6665   789999999999999999999999999987    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                          +|....+++.+|.++...|++++|. ..|+++++++|+
T Consensus        95 ----~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~  131 (148)
T 2dba_A           95 ----DGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPK  131 (148)
T ss_dssp             ----TSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSS
T ss_pred             ----CccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence                5667889999999999999999999 999999999986

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.02  E-value=6.2e-10  Score=92.98  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      ..++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++++        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            356788999999999999999999999998        7888889999999999999999999999999976        


Q ss_pred             Chh--HHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHhhh
Q 004848          680 NPD--VDDEKRRLAELLKEA-GRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       680 ~p~--~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~~p~  717 (727)
                      .|.  ...++..+|.++... |++++|+ +++++++...|.
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~  109 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHH  109 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCC
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccC
Confidence            466  788999999999999 9999999 999999998886

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.02  E-value=2.9e-09  Score=116.23  Aligned_cols=177  Identities=9%  Similarity=0.017  Sum_probs=155.1

Q ss_pred             HcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHhcCCCCCC
Q 004848          444 SLSR-YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       444 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      ..|+ .++|+..+.+++.+        +|....+|+..+.++...|+          +++++.++++++..         
T Consensus        40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------  102 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------  102 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence            3444 46789999999999        89999999999999999998          99999999999998         


Q ss_pred             hHhHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004848          513 PEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLR  589 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  589 (727)
                      +|....+|...+.++...+  ++++|++++.+++++.++.       ..+|...+.++...| .++++++++.++++.  
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--  173 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence            4556789999999999999  7799999999999997766       578999999999999 899999999998874  


Q ss_pred             HhCCCCchhHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848          590 AIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (727)
Q Consensus       590 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (727)
                            .+....+|+..+.++...              +.+++|++++.+|+.+        +|+...+|+.++.++...
T Consensus       174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred             ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence                  233457889999888875              5689999999999999        898889999999999998


Q ss_pred             CChHH
Q 004848          656 GRLDD  660 (727)
Q Consensus       656 g~~~~  660 (727)
                      +++++
T Consensus       240 ~~~~~  244 (567)
T 1dce_A          240 EPHDV  244 (567)
T ss_dssp             CCCSC
T ss_pred             CCccc
Confidence            88665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.97  E-value=1e-09  Score=92.96  Aligned_cols=92  Identities=22%  Similarity=0.203  Sum_probs=79.7

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004848          612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA  691 (727)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La  691 (727)
                      .+|++++|+.+|++++++     +..+|....++..+|.+|..+|++++|+.+|++++++        +|+...+++.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            368899999999999986     1224888899999999999999999999999999987        688889999999


Q ss_pred             HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      .++...|++++|+ ..|++++..+|.
T Consensus        69 ~~~~~~g~~~~A~-~~~~~al~~~p~   93 (117)
T 3k9i_A           69 MVLYNLGRYEQGV-ELLLKIIAETSD   93 (117)
T ss_dssp             HHHHHHTCHHHHH-HHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            9999999999999 999999999886

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.97  E-value=1.6e-09  Score=91.61  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=76.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (727)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (727)
                      .+|++++|+.+|++++++.     ...+....++..+|.++...|++++|+.+|++++++        +|+...+++.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            4689999999999999741     113456789999999999999999999999999999        888899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHH
Q 004848          650 GTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                      .++..+|++++|+.+|++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.97  E-value=8.4e-10  Score=96.22  Aligned_cols=89  Identities=12%  Similarity=0.142  Sum_probs=82.6

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHhcCCCCh
Q 004848          612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL----------DDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      +.+.+++|+..|++++++        +|....+|.++|.++...+++          ++|+..|++++++        +|
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            456789999999999999        999999999999999999875          5999999999998        79


Q ss_pred             hHHHHHHHHHHHHHHhC-----------ChhHHHHHHHHHHHHHhhh
Q 004848          682 DVDDEKRRLAELLKEAG-----------RVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g-----------~~~~A~~~~l~~al~~~p~  717 (727)
                      +...++++||.+|..+|           ++++|+ .+|++|++++|+
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~-~~~~kAl~l~P~  123 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT-QFFQQAVDEQPD  123 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH-HHHHHHHHhCCC
Confidence            99999999999999885           899999 999999999997

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.97  E-value=1.1e-09  Score=111.98  Aligned_cols=132  Identities=14%  Similarity=0.147  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHHHHHcCChHHHHH
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA-----------------SVFVRLADMYNRTGKLRESKS  495 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~  495 (727)
                      ..+..+|..++..|+|++|+.+|++++.+        .|...                 .++.++|.+|..+|++++|+.
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34445555555555555555555555554        22222                 488999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HHHcCCH
Q 004848          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNY  574 (727)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~  574 (727)
                      +|++++.+         .+....+++.+|.+|..+|++++|+.+|++++.+.+..       ..++..++.+ ....+..
T Consensus       252 ~~~~al~~---------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-------~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          252 HCNIVLTE---------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-------KAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHHHHH---------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             HHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHH
Confidence            99999998         34457889999999999999999999999999987765       3456667777 3455677


Q ss_pred             HHHHHHHHHHHHHH
Q 004848          575 SDSYDSFKNAISKL  588 (727)
Q Consensus       575 ~~A~~~~~~al~~~  588 (727)
                      +++...|.+++...
T Consensus       316 ~~a~~~~~~~l~~~  329 (338)
T 2if4_A          316 QKQKEMYKGIFKGK  329 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHhhCCC
Confidence            88888888887754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.87  E-value=1.9e-09  Score=89.95  Aligned_cols=102  Identities=11%  Similarity=0.038  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (727)
                      ..++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+...     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----   72 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----   72 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----
Confidence            456778899999999999999999999987        6777788999999999999999999999999987211     


Q ss_pred             ChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Q 004848          512 PPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYN  548 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~  548 (727)
                        .....++..+|.++... |++++|+.++++++...+
T Consensus        73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           73 --EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             --TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             --cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence              01466788999999999 999999999998876644

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.84  E-value=6.6e-09  Score=90.55  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=77.0

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHhcCCCC
Q 004848          569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI----------NEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      .+.+.|++|+..+++++++        .+..+.+|+++|.++...+++          ++|+..|++|+++        +
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence            3456789999999999987        234578999999999998875          5999999999999        9


Q ss_pred             ccHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHH
Q 004848          639 PDTLGVYSNLAGTYDAIG-----------RLDDAIEILEFVVGI  671 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~  671 (727)
                      |+...+|+++|.+|..+|           ++++|+.+|++|+++
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            999999999999999885           899999999999998

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.84  E-value=3e-08  Score=79.08  Aligned_cols=85  Identities=24%  Similarity=0.403  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004848          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG  677 (727)
Q Consensus       598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g  677 (727)
                      ....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+      
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------   72 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------   72 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            45678999999999999999999999999998        7888889999999999999999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHhC
Q 004848          678 TANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       678 ~~~p~~~~~~~~La~~~~~~g  698 (727)
                        +|....++..+|.++...|
T Consensus        73 --~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 --DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --CTTCHHHHHHHHHHHHHHC
T ss_pred             --CCCCHHHHHHHHHHHHhcC
Confidence              5777889999999998765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.84  E-value=1.1e-06  Score=94.34  Aligned_cols=343  Identities=10%  Similarity=-0.023  Sum_probs=198.7

Q ss_pred             HcC-ChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004848          277 SLG-QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (727)
Q Consensus       277 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (727)
                      ..| +++.|...|++++...+.                        |+++.+..+|++++..        .| ...+|..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~--------~p-s~~LW~~   52 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKK--------SY-NLDLWML   52 (493)
T ss_dssp             ------CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTT--------CC-CHHHHHH
T ss_pred             HcCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhcc--------CC-CHHHHHH
Confidence            456 488899999998876411                        7899999999999986        45 4456666


Q ss_pred             HHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848          356 LAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAE  430 (727)
Q Consensus       356 la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (727)
                      ........++ .+.....|+.++.......  ...   ..|......+.    ..++.+.+...|++|+..    + ...
T Consensus        53 Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P-~~~  122 (493)
T 2uy1_A           53 YIEYVRKVSQKKFKLYEVYEFTLGQFENYW--DSY---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----P-MGS  122 (493)
T ss_dssp             HHHHHHHHC----CTHHHHHHHHHHSTTCT--TCH---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----C-CTT
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHcCCCc--ccH---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----h-hhh
Confidence            6666655553 3556677888877532211  111   33444444432    346788899999999752    1 111


Q ss_pred             HHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--CC-----h
Q 004848          431 VASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT--GK-----L  490 (727)
Q Consensus       431 ~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~-----~  490 (727)
                      ....|......-             .....+..|...|+.+......       .....|......-...  +-     .
T Consensus       123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~-------~s~~~W~~y~~~E~~~~~~~~~~~~~  195 (493)
T 2uy1_A          123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG-------WSVKNAARLIDLEMENGMKLGGRPHE  195 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhcCCccCcchhhH
Confidence            122222111111             1123344455555555444221       0112343333332211  11     3


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (727)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (727)
                      +.....|++++...         |....+|...+..+...|+.++|...|++|+.. |...       .++...+..   
T Consensus       196 ~Rv~~~ye~al~~~---------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-------~l~~~y~~~---  255 (493)
T 2uy1_A          196 SRMHFIHNYILDSF---------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-------FLSLYYGLV---  255 (493)
T ss_dssp             HHHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-------HHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-------HHHHHHHhh---
Confidence            45677899998873         223677888999999999999999999999998 5431       122222221   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004848          571 LGNYSDSYDSFKNAISKLRAIG-----ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (727)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (727)
                       .+.++.   ++..........     ...+.....+|...+....+.++.+.|...|++| ..        .+....++
T Consensus       256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--------~~~~~~v~  322 (493)
T 2uy1_A          256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--------EGVGPHVF  322 (493)
T ss_dssp             -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------SCCCHHHH
T ss_pred             -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------CCCChHHH
Confidence             111111   222222110000     0011223467777888888888999999999998 32        11234466


Q ss_pred             HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004848          646 SNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL  711 (727)
Q Consensus       646 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a  711 (727)
                      ...|.+....+ +.+.|...|+.+++.+     ++.|   ..+...+......|+.+.|. ..|+++
T Consensus       323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~---~~~~~yid~e~~~~~~~~aR-~l~er~  380 (493)
T 2uy1_A          323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST---LLKEEFFLFLLRIGDEENAR-ALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCHHHHH-HHHHHS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence            66677666666 6999999999999853     2334   34555677888899999998 777765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.81  E-value=3.3e-09  Score=88.49  Aligned_cols=93  Identities=17%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      +.++..+|.++...|++++|+.+|++++.+        +|....++.++|.++..+|++++|+..|++++.+        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            567889999999999999999999999999        8888899999999999999999999999999975        


Q ss_pred             ChhH------HHHHHHHHHHHHHhCChhHHHHHHHH
Q 004848          680 NPDV------DDEKRRLAELLKEAGRVRSRKAQSLE  709 (727)
Q Consensus       680 ~p~~------~~~~~~La~~~~~~g~~~~A~~~~l~  709 (727)
                      +|..      ..+++.+|.++...|+++.|+ ..++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~  102 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV-VEVD  102 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS-SSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH-hHHH
Confidence            4555      788999999999999998887 5443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.74  E-value=4.4e-08  Score=82.36  Aligned_cols=83  Identities=20%  Similarity=0.231  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                      +|+..|++++..        +|....+++.+|.+|...|++++|+.+|++++.+        +|....+++.+|.+|...
T Consensus         3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence            578889999887        7888899999999999999999999999999987        677888999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhhh
Q 004848          698 GRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       698 g~~~~A~~~~l~~al~~~p~  717 (727)
                      |++++|+ ..|+++++++|.
T Consensus        67 g~~~~A~-~~~~~al~~~~~   85 (115)
T 2kat_A           67 GDRAGAR-QAWESGLAAAQS   85 (115)
T ss_dssp             TCHHHHH-HHHHHHHHHHHH
T ss_pred             CCHHHHH-HHHHHHHHhccc
Confidence            9999999 999999999986

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.73  E-value=9.5e-08  Score=80.24  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=77.5

Q ss_pred             hHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004848          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (727)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (727)
                      ++|+..|++++...     +.++    .+++.+|.+|...|++++|+.+|++++.+        +|....+++.+|.+|.
T Consensus         2 ~~a~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQG-----TDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTTT-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence            46889999999875     4443    35899999999999999999999999998        7888999999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          362 QALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                      ..|++++|+.+|++++.+.+....
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999987653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=1.4e-08  Score=84.57  Aligned_cols=94  Identities=11%  Similarity=0.148  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      +..+..+|.++...|++++|+.+|++++.+.        +....++.++|.++...|++++|+.+|++++.+        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            4678899999999999999999999999872        223578999999999999999999999999998        


Q ss_pred             CccH------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          638 HPDT------LGVYSNLAGTYDAIGRLDDAIEILEF  667 (727)
Q Consensus       638 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~  667 (727)
                      +|..      ..+++.+|.++..+|+++.|+..+++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            6766      78899999999999998888766543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.66  E-value=2.1e-07  Score=74.00  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=71.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      .+....+++.+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+    
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   72 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----   72 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3456678888999999999999999999999987        6777888999999999999999999999999988    


Q ss_pred             CCCCChHhHHHHHHHHHHHHHhcc
Q 004848          508 VPGVPPEEIASGLTDVSSIYESMN  531 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g  531 (727)
                           .|....++..+|.++...|
T Consensus        73 -----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 -----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHC
T ss_pred             -----CCCCHHHHHHHHHHHHhcC
Confidence                 2334667888888887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.60  E-value=1.3e-07  Score=77.08  Aligned_cols=71  Identities=15%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +|+...+++.+|.+|...|++++|+.+|++++++        +|....+++.+|.+|...|++++|+ ..|++++++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhhc
Confidence            5777889999999999999999999999999987        6778889999999999999999999 999999999886

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.59  E-value=1e-07  Score=77.43  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (727)
Q Consensus       604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (727)
                      ..+|.++...|++++|+.+|+++++.        +|.... +++.+|.+|..+|++++|+.+|++++.+        +|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            45788999999999999999999998        888888 9999999999999999999999999987        466


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ...++..        +.+.++. ..|++++..+|.
T Consensus        68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~   93 (99)
T 2kc7_A           68 SPALQAR--------KMVMDIL-NFYNKDMYNQLE   93 (99)
T ss_dssp             STHHHHH--------HHHHHHH-HHHCCTTHHHHC
T ss_pred             cHHHHHH--------HHHHHHH-HHHHHHhccCcc
Confidence            5555532        5677888 889988888887

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.57  E-value=4.3e-07  Score=78.97  Aligned_cols=110  Identities=14%  Similarity=0.105  Sum_probs=93.4

Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 004848          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (727)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  610 (727)
                      +++++|+.+|+++.+..     ...    +.  +|.+|...+.+++|+.+|+++.+.          ....++++||.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence            57899999999998753     221    22  899999999999999999999874          1357899999999


Q ss_pred             HH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004848          611 VQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGI  671 (727)
Q Consensus       611 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  671 (727)
                      ..    .+++++|+.+|+++.+.          ....++++||.+|..    .+++++|+.+|+++.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            98    89999999999999875          335689999999999    99999999999999974

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.56  E-value=4.1e-07  Score=74.07  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004848          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (727)
Q Consensus       309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (727)
                      .+++.+|.+|...|++++|+.+|++++++        +|....+++.+|.+|...|++++|+..|++++.+.+...+
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            35899999999999999999999999999        7888899999999999999999999999999999887654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.49  E-value=8.2e-07  Score=77.19  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHH
Q 004848          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (727)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  316 (727)
                      ++++|+.+|++|.+.      +.+     .+.  +|.+|...+.+++|+.+|+++.+..       +    ..+++.||.
T Consensus        10 d~~~A~~~~~~aa~~------g~~-----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~----~~a~~~Lg~   65 (138)
T 1klx_A           10 DLKKAIQYYVKACEL------NEM-----FGC--LSLVSNSQINKQKLFQYLSKACELN-------S----GNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHT------TCT-----THH--HHHHTCTTSCHHHHHHHHHHHHHTT-------C----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC------CCH-----hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------C----HHHHHHHHH
Confidence            388999999999864      222     123  8999999999999999999998762       2    345899999


Q ss_pred             HHHH----hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 004848          317 TYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDI  379 (727)
Q Consensus       317 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  379 (727)
                      +|..    .+++++|+.+|+++.+.          ....+++.||.+|..    .+++++|+.+|+++.+.
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9999    89999999999999876          356889999999999    89999999999999876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.39  E-value=1.1e-06  Score=71.10  Aligned_cols=90  Identities=9%  Similarity=0.146  Sum_probs=74.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (727)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (727)
                      +.+|.++...|++++|+..|++++..        .|.... ++..+|.+|...|++++|+.+|++++.+..         
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------   66 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP---------   66 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Confidence            56788999999999999999999998        777788 999999999999999999999999999932         


Q ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      ....++..        +.+.+++..|++++...+..
T Consensus        67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            22223321        67788888888888877755

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.35  E-value=0.00055  Score=69.59  Aligned_cols=212  Identities=13%  Similarity=0.096  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      +...+|.+|...|++++-..++......+....   ....+.....+-..+.. -+..+.-+..+..+++.....     
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----   92 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE-----   92 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-----
Confidence            456777888888888777777766554433221   22333333344444433 244556667777777766541     


Q ss_pred             hHhHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004848          513 PEEIAS--GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (727)
Q Consensus       513 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (727)
                      ...+..  .-..+|.+|+..|+|.+|.+.+.+.++..... ++...+..++.....+|...+++.++..++.++......
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            122222  44589999999999999999999999988765 445677788888999999999999999999999988766


Q ss_pred             hCCCCchhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 004848          591 IGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL  658 (727)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  658 (727)
                      +. .++...+.....-|.++. ..++|..|..+|-++..-+...   ..|....++..++.|-...++.
T Consensus       172 i~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          172 IY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             SC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred             CC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence            53 445566777788889999 8999999999999997665432   2344455556666666666664

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.27  E-value=0.00027  Score=71.88  Aligned_cols=212  Identities=15%  Similarity=0.102  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      .+...||.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+.++++.++..    ..
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r   94 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KR   94 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HH
Confidence            3578899999999999999998876643332221 12233333344444433 355666777788888776542    22


Q ss_pred             hHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          472 AVAS--VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       472 ~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                      ....  .-..||.+|+..|+|.+|...+.+.+..+.+.   ++......++.....+|...+++.++..+|.+|......
T Consensus        95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A           95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            3323  44589999999999999999999999988773   345678889999999999999999999999999998876


Q ss_pred             CCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004848          550 APGQQSTVAGIEAQMGVMYY-MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (727)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  615 (727)
                      .+.++...+.+...-|.++. ..++|..|..+|-++..-+...+   .+....++..++.+....++
T Consensus       172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence            65555566777778899999 89999999999999876654332   22233445556666666555

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.27  E-value=7.7e-06  Score=78.06  Aligned_cols=85  Identities=20%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccH--HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhcCCCChhH-HHHH
Q 004848          616 INEAVELFEEARSILEQECGPYHPDT--LGVYSNLAGTYDAI-----GRLDDAIEILEFVVGIREEKLGTANPDV-DDEK  687 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~g~~~p~~-~~~~  687 (727)
                      ...|...+++|+++        +|..  ..+|..||.+|...     |+.++|..+|++|+++        +|.. ..++
T Consensus       179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~  242 (301)
T 3u64_A          179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHH  242 (301)
T ss_dssp             HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHH
T ss_pred             HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHH
Confidence            57899999999999        8884  55999999999995     9999999999999998        6764 8899


Q ss_pred             HHHHHHHHHh-CChhHHHHHHHHHHHHHhhh
Q 004848          688 RRLAELLKEA-GRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       688 ~~La~~~~~~-g~~~~A~~~~l~~al~~~p~  717 (727)
                      +..|..+... |++++|. .+|++++..+|.
T Consensus       243 v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~  272 (301)
T 3u64_A          243 ITYADALCIPLNNRAGFD-EALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHTTTTTTCHHHHH-HHHHHHHHCCGG
T ss_pred             HHHHHHHHHhcCCHHHHH-HHHHHHHcCCCC
Confidence            9999999884 9999999 999999999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.23  E-value=2e-05  Score=78.67  Aligned_cols=137  Identities=12%  Similarity=0.080  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHh
Q 004848          561 EAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY----SINEAVELFEEARSILEQE  633 (727)
Q Consensus       561 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~  633 (727)
                      ++..|..+...++   +.+|+.+|++|+++        .|.++.++..++.+|....    .......-+..++......
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            3444555555544   57899999999997        3445666666666665321    1122223334444422221


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                        ...|....++..++..+...|++++|+..+++|+.+        +|. ..++..+|.++...|++++|+ +.|++|+.
T Consensus       271 --~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~-e~~~~Alr  338 (372)
T 3ly7_A          271 --PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFN  338 (372)
T ss_dssp             --GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             --ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHh
Confidence              124667778888999898899999999999999998        344 567889999999999999999 99999999


Q ss_pred             Hhhh
Q 004848          714 ANSR  717 (727)
Q Consensus       714 ~~p~  717 (727)
                      ++|.
T Consensus       339 L~P~  342 (372)
T 3ly7_A          339 LRPG  342 (372)
T ss_dssp             HSCS
T ss_pred             cCCC
Confidence            9996

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.19  E-value=8.4e-05  Score=70.99  Aligned_cols=106  Identities=15%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             ChhHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CC
Q 004848          428 DAEVASVDCSIGDTYLS-----LS------RYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRT-----GK  489 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~  489 (727)
                      .+..+..+++.|.++..     .|      ....|...+++++++        +|.  ...+|..+|.+|...     |+
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            45556666666655533     13      357888889999998        777  567999999999995     99


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCChHh-HHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhC
Q 004848          490 LRESKSYCENALRIYEKPVPGVPPEE-IASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  550 (727)
                      .++|..+|++|+++.         |. ...+++..|..+.. +|++++|..++++++...+..
T Consensus       220 ~ekA~~~ferAL~Ln---------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          220 MEKAHTAFEHLTRYC---------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHC---------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHHhC---------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999999993         32 25678888999888 599999999999999987664

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.17  E-value=2.3e-05  Score=64.03  Aligned_cols=83  Identities=16%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      +.-.+.+|..++..|+|..|+.+|++|++....... ..+....++..||.+|.++|+++.|+.++++++.+        
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence            345678999999999999999999999988654321 12456789999999999999999999999999987        


Q ss_pred             ChhHHHHHHHHH
Q 004848          680 NPDVDDEKRRLA  691 (727)
Q Consensus       680 ~p~~~~~~~~La  691 (727)
                      .|+...+..+++
T Consensus        76 ~P~~~~~~~n~~   87 (104)
T 2v5f_A           76 DPEHQRANGNLK   87 (104)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CCCCHHHHhhHH
Confidence            566666666665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.13  E-value=7.3e-05  Score=74.67  Aligned_cols=122  Identities=14%  Similarity=0.083  Sum_probs=91.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004848          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK---G-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (727)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~---g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (727)
                      .+.+|+.+|++++++.|...        .++..++.+|...   + ........+..++.........+..+.++..++.
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a--------~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal  285 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFT--------YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV  285 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHH
Confidence            46899999999999988763        3455555555321   1 1122333344444433444455667788888898


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      .+...|++++|+..+++++.+        ++. ..++..+|.++...|++++|++.|.+|+.+
T Consensus       286 ~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          286 SALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            899899999999999999999        454 578889999999999999999999999999

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.13  E-value=3.2e-05  Score=63.07  Aligned_cols=81  Identities=16%  Similarity=0.035  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (727)
                      ..++.+|..++..|+|..|+.+|++|+........ ......++..+|.+++.+|+++.|+.++++++.+        .|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P   77 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence            45789999999999999999999999987654432 3567789999999999999999999999999998        67


Q ss_pred             hHHHHHHHHH
Q 004848          472 AVASVFVRLA  481 (727)
Q Consensus       472 ~~~~~~~~la  481 (727)
                      ....++.+++
T Consensus        78 ~~~~~~~n~~   87 (104)
T 2v5f_A           78 EHQRANGNLK   87 (104)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHhhHH
Confidence            7777777665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.07  E-value=0.00017  Score=77.29  Aligned_cols=168  Identities=10%  Similarity=0.019  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHH
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---------LRESKSYCENALRIY  504 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~  504 (727)
                      .+..+-..+.+.|++++|+.+|+++...       .-.....+|..|-.++...+.         +++|..+|++.... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            3455567888999999999999988764       122234566767666665544         57788888876654 


Q ss_pred             hcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (727)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (727)
                           +.. | ...+|+.+...|.+.|++++|..+|++....     |..+. ..+|..+-..|.+.|+.++|..+|++.
T Consensus       100 -----G~~-P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A          100 -----KVV-P-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             -----TCC-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHH
Confidence                 211 2 2457889999999999999999999987653     33333 357888899999999999999999987


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      ...    +-. +  ...+|..|-.+|.+.|+.++|.++|++..+.
T Consensus       167 ~~~----G~~-P--d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          167 VES----EVV-P--EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHT----TCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhc----CCC-C--CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            652    221 2  2468899999999999999999999997664

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.06  E-value=0.00011  Score=78.70  Aligned_cols=168  Identities=10%  Similarity=-0.060  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHHH
Q 004848          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---------QFSEAQKFCQMALDIHK  381 (727)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~  381 (727)
                      +..+-..|.+.|++++|+.+|+++.+..      -.|+ ..+|..+-.++...+         .+++|..+|.+..... 
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-  100 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNG------VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-  100 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-
Confidence            5556688899999999999999987652      1233 355666655665443         3788888888876532 


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (727)
Q Consensus       382 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (727)
                         -.++   ..+|..+...|...|++++|+.+|.+...    .+..|. ..+|..+-..|...|++++|..+|++..+.
T Consensus       101 ---~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          101 ---VVPN---EATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             ---CCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence               1112   35789999999999999999999987643    344444 357788889999999999999999987654


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (727)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (727)
                             .......+|..|...|.+.|+.++|..++++..+..
T Consensus       170 -------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          170 -------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             -------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             -------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence                   123345788999999999999999999999988774

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.04  E-value=1.4e-05  Score=63.47  Aligned_cols=71  Identities=18%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             CccHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004848          638 HPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                      +|+...++..+|.++...++   .++|..++++++.+        +|..+.+++.||.+++..|++++|+ .+|+++++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~   72 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS   72 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence            46667789999999987766   79999999999998        7999999999999999999999999 999999999


Q ss_pred             hhh
Q 004848          715 NSR  717 (727)
Q Consensus       715 ~p~  717 (727)
                      +|.
T Consensus        73 ~p~   75 (93)
T 3bee_A           73 NDP   75 (93)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            887

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.00  E-value=3.8e-05  Score=65.99  Aligned_cols=86  Identities=12%  Similarity=0.016  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 004848          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLA  691 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La  691 (727)
                      ...+.+.|.+.+..        .+....+.+++|+++.+..   +.++++.+++..++.       +.| ...++++.||
T Consensus        14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence            34555666666553        4566779999999999988   677999999998875       136 6789999999


Q ss_pred             HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+.+.|+|++|. ++++.+|+++|.
T Consensus        79 v~~~kl~~Y~~A~-~y~~~lL~ieP~  103 (152)
T 1pc2_A           79 VGNYRLKEYEKAL-KYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHTSCHHHHH-HHHHHHHHHCTT
T ss_pred             HHHHHccCHHHHH-HHHHHHHhcCCC
Confidence            9999999999999 999999999996

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.99  E-value=5.3e-05  Score=65.39  Aligned_cols=130  Identities=11%  Similarity=0.022  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004848          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (727)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (727)
                      ..+++.....++..|. |+.|+-.+..++.+.+...+..+....+.++..+|.+++..++|..|...|++++...+....
T Consensus        20 ~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             -CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3467889999999997 999999999999887554322233456788999999999999999999999999887653221


Q ss_pred             cc----------------chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 004848          301 QE----------------HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH  360 (727)
Q Consensus       301 ~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  360 (727)
                      ..                +.....++.+.++.||..++++.+|+..++..-..         .....+...||.+|
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---------~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---------QRTPKINMLLANLY  165 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---------GCCHHHHHHHHHHC
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---------hcCHHHHHHHHHHh
Confidence            11                01123456889999999999999999987653222         23455566666654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.98  E-value=0.00018  Score=62.18  Aligned_cols=127  Identities=17%  Similarity=0.002  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP--  636 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--  636 (727)
                      ++..-...++..|.|+.|+-....++.+.....+. .+.....++..+|.+++..++|..|...|++|++..+.+...  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45566777888999999999999999886554332 355667889999999999999999999999999987743211  


Q ss_pred             ---------------CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          637 ---------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (727)
Q Consensus       637 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (727)
                                     +.+...++.+.+|.||..+|++++|+..++..-         ....++.....||.+|.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip---------~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP---------SRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC---------GGGCCHHHHHHHHHHCC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC---------chhcCHHHHHHHHHHhc
Confidence                           123345788999999999999999999887542         22345666777777763

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.81  E-value=8.5e-05  Score=58.85  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          600 GVALNQMGLACVQRYS---INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      +.++..+|.+++..++   .++|..++++++.+        +|+...+++.+|..++..|+|++|+.+|+++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5678888988876665   79999999999999        9999999999999999999999999999999864

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.74  E-value=0.00029  Score=60.51  Aligned_cols=75  Identities=13%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCC-c-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          599 FGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYH-P-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                      ...+.+++|+++.+.+   ++++++.+|+..++.        + | ...+++++||..|.+.|+|++|+.++++++++  
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--  100 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--  100 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence            3578899999999988   677999999999987        5 6 56789999999999999999999999999998  


Q ss_pred             HhcCCCChhHHHHHHH
Q 004848          674 EKLGTANPDVDDEKRR  689 (727)
Q Consensus       674 ~~~g~~~p~~~~~~~~  689 (727)
                            .|++..+...
T Consensus       101 ------eP~n~QA~~L  110 (152)
T 1pc2_A          101 ------EPQNNQAKEL  110 (152)
T ss_dssp             ------CTTCHHHHHH
T ss_pred             ------CCCCHHHHHH
Confidence                  5665555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.0079  Score=63.04  Aligned_cols=218  Identities=12%  Similarity=0.046  Sum_probs=140.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (727)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (727)
                      |+++.|++.+....+..+...+......+...+..++...++|+...+++.-...    ..+. .+...........-|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHHHH
Confidence            5678888777555555555666676777888888999999999887766543221    1111 1222222222222222


Q ss_pred             -HcCChHHHHHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004848          486 -RTGKLRESKSYCENALRIYEKPVPGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (727)
Q Consensus       486 -~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (727)
                       .....+.  ......+........+.-  ....+.....|+.+|...|++.+|...+.....-.... .+......++.
T Consensus       105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l  181 (445)
T 4b4t_P          105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL  181 (445)
T ss_dssp             HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred             hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence             2232222  122233333222211111  22356777889999999999999999998876443222 22335567788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                      ....+|...+++.+|...+.++........ ..+......+...|.++...++|.+|..+|.++......
T Consensus       182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          182 EQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            889999999999999999999865444332 233456678888999999999999999999999886544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.028  Score=58.81  Aligned_cols=220  Identities=12%  Similarity=-0.016  Sum_probs=141.1

Q ss_pred             hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004848          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (727)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (727)
                      .|+++.|++.+....+..+...+.  .....++..+..++...|+++...+++....   ...+..............-|
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~--~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr~qlk~ai~~~V~~~~~~  103 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDL--ASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKHGQLKLSIQYMIQKVMEY  103 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCST--TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTTTTSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHH
Confidence            367888887765444444333322  2224567788889999999998877664322   22222222222222222222


Q ss_pred             H-HcCCHHHHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004848          443 L-SLSRYDEAGFAYQKALTAFKTNKGE---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (727)
Q Consensus       443 ~-~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (727)
                      . .....+.  ......+.........   -....+.....|+.+|...|++.+|...+.....-...   ..+......
T Consensus       104 l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve  178 (445)
T 4b4t_P          104 LKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQ  178 (445)
T ss_dssp             HHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHH
T ss_pred             HhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHH
Confidence            2 1222121  1111222211111100   01235677789999999999999999999987655433   345666788


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      .+.....+|...+++.+|..++.++..........+......+...|.++...++|.+|..+|.++.......+
T Consensus       179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~  252 (445)
T 4b4t_P          179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS  252 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence            89999999999999999999999987655555455556667788899999999999999999999988765443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.18  E-value=0.0029  Score=52.19  Aligned_cols=86  Identities=14%  Similarity=0.037  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 004848          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD---AIEILEFVVGIREEKLGTANP-DVDDEKRRLA  691 (727)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La  691 (727)
                      ...+...|.+.+..        .+....+.+++|+++.+..+..+   ++.+++..+       ....| ...+.++.||
T Consensus        17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LA   81 (126)
T 1nzn_A           17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLA   81 (126)
T ss_dssp             HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHH
Confidence            34555666666554        34566789999999999887665   555555544       34446 6788999999


Q ss_pred             HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          692 ELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       692 ~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+.+.|+|++|. .+++.+|+..|.
T Consensus        82 vg~yklg~Y~~A~-~~~~~lL~~eP~  106 (126)
T 1nzn_A           82 VGNYRLKEYEKAL-KYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             HHHHHhhhHHHHH-HHHHHHHHhCCC
Confidence            9999999999999 999999999995

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.94  E-value=0.0063  Score=51.29  Aligned_cols=104  Identities=13%  Similarity=-0.017  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004848          559 GIEAQMGVMYYMLGNY------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  632 (727)
                      ..|........+.|+.      ++-++.|++|+...+.........++..|...|.. ...++.++|.+.|+.++.+   
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---   89 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---   89 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence            4566666666777887      78888999988876544334445567777777855 5668999999999999997   


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                           |...+.+|...|..-.++|+...|...+.+++.+
T Consensus        90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence                 5556889999999999999999999999999985

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.82  E-value=0.012  Score=49.52  Aligned_cols=108  Identities=18%  Similarity=0.101  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          432 ASVDCSIGDTYLSLSRY------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      ...|..........|+.      ++-++.|++|+....-.........+..|...|.. ...++.++|...|+.++.+.+
T Consensus        13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH
Confidence            34555555566666777      77778888888764222222345567778888866 566999999999999999822


Q ss_pred             cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004848          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (727)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (727)
                               ..+.+|...|....++|+...|.+.+.+|+.+.+.
T Consensus        92 ---------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           92 ---------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             ---------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             ---------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence                     23889999999999999999999999999986543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.53  E-value=0.025  Score=46.66  Aligned_cols=74  Identities=12%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          600 GVALNQMGLACVQRYSINE---AVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      ..+.+++|+++....+...   ++.+++..+..       ..| ..-++++.||..+.+.|+|++|+.+++.++++    
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~----  103 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----  103 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----
Confidence            5788889999998877655   66666665543       235 56779999999999999999999999999988    


Q ss_pred             cCCCChhHHHHHH
Q 004848          676 LGTANPDVDDEKR  688 (727)
Q Consensus       676 ~g~~~p~~~~~~~  688 (727)
                          .|++..+..
T Consensus       104 ----eP~n~QA~~  112 (126)
T 1nzn_A          104 ----EPQNNQAKE  112 (126)
T ss_dssp             ----CTTCHHHHH
T ss_pred             ----CCCCHHHHH
Confidence                565555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.90  E-value=0.17  Score=57.88  Aligned_cols=99  Identities=17%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             HHHHHcCChhHHHH-HHHHhcc-cchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004848          273 AIYCSLGQYNEAIP-VLEQSIE-IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (727)
Q Consensus       273 ~~~~~~g~~~~A~~-~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (727)
                      ......+++++|.. ++.. +. ..              .+..++..+...|.+++|+...+.             +.. 
T Consensus       607 ~~~~~~~~~~~a~~~~l~~-i~~~~--------------~~~~~~~~l~~~~~~~~a~~~~~~-------------~~~-  657 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN-VEGKD--------------SLTKIARFLEGQEYYEEALNISPD-------------QDQ-  657 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG-CCCHH--------------HHHHHHHHHHHTTCHHHHHHHCCC-------------HHH-
T ss_pred             hHHHHhCCHHHHHHHHHhc-CCchH--------------HHHHHHHHHHhCCChHHheecCCC-------------cch-
Confidence            33456789998876 4421 11 10              135566777888888888765432             111 


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA  418 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a  418 (727)
                        .   .......|++++|.++.+..       ..      ...|..+|..+...|+++.|+.+|.++
T Consensus       658 --~---f~~~l~~~~~~~A~~~~~~~-------~~------~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          658 --K---FELALKVGQLTLARDLLTDE-------SA------EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             --H---HHHHHHHTCHHHHHHHHTTC-------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --h---eehhhhcCCHHHHHHHHHhh-------Cc------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence              1   22346678999888875332       11      146899999999999999999999876

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.053  Score=56.54  Aligned_cols=109  Identities=14%  Similarity=0.028  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (727)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (727)
                      ....++..+|..|...|++++|.++|.++.........     ....+..+..++...+++..+..++.++.......++
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d  203 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD  203 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence            45567889999999999999999999998887654432     2466888889999999999999999999888777777


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (727)
                      ...........|.++...++|..|..+|..++..
T Consensus       204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            6666677777888899999999999999887654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.57  E-value=4.2  Score=45.94  Aligned_cols=188  Identities=12%  Similarity=0.140  Sum_probs=98.8

Q ss_pred             HHHHHhcCCC---CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC---CccHHHHHHHHHHHHHHcCC
Q 004848          500 ALRIYEKPVP---GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGN  573 (727)
Q Consensus       500 al~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~  573 (727)
                      ++.+..+.++   ........-+++.+|.++...++  +++.++...+.-.....+.   ......+...||.+|.-.++
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~  470 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN  470 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence            3444444443   23344566778888888777664  5777777766543211121   11222345577877776666


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004848          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (727)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  653 (727)
                       +++...+...+.      +........+-..||.++...|+-+-...++..+.+.        ..+...-...+|..+.
T Consensus       471 -eev~e~L~~~L~------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll  535 (963)
T 4ady_A          471 -IEVYEALKEVLY------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALI  535 (963)
T ss_dssp             -HHHHHHHHHHHH------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHh------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhh
Confidence             345555544443      1111112245667888888888876666555555431        2233323344444455


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                      ..|+.+.+....+....       ..+|.... +...+|..|...|+...-. ..+..+.
T Consensus       536 ~~g~~e~~~~li~~L~~-------~~dp~vRygaa~alglAyaGTGn~~aIq-~LL~~~~  587 (963)
T 4ady_A          536 NYGRQELADDLITKMLA-------SDESLLRYGGAFTIALAYAGTGNNSAVK-RLLHVAV  587 (963)
T ss_dssp             TTTCGGGGHHHHHHHHH-------CSCHHHHHHHHHHHHHHTTTSCCHHHHH-HHHHHHH
T ss_pred             hCCChHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHhc
Confidence            66777766665554433       22343322 2345666777777754332 3444443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.094  Score=54.64  Aligned_cols=144  Identities=13%  Similarity=0.015  Sum_probs=65.9

Q ss_pred             HHHHhcCHHHHHHHHHHHH--HHHHh-cCCCCCHHHHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHHHhC
Q 004848          359 AHVQALQFSEAQKFCQMAL--DIHKD-NGSPASLEEAADRRLMGLICETKGDHEAA----------LEHLVLASMTMIAN  425 (727)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al--~~~~~-~~~~~~~~~a~~~~~l~~~~~~~g~~~~A----------~~~~~~al~~~~~~  425 (727)
                      .++..+++++|..+....+  ..... +...-+...+.+|+..+.++...|+....          ...+..+++.....
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456778888888877655  12111 11112233467788888888888876653          22333333433344


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      .+....+.+++.+-+.|...+.|++|..+..++.-.  .. ...+...+..++.+|.++...++|.+|..++..|+..+.
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            556677889999999999999999999998877311  00 011345577888999999999999999999999987643

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.044  Score=57.13  Aligned_cols=110  Identities=9%  Similarity=0.135  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                      .....++..+|..|...|++++|.+.|.++......      .......+..+..++...+++..+..++.++..+....
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            345567889999999999999999999999887643      23457788889999999999999999999998877655


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                       +++..........|.++...++|..|..+|-.+...
T Consensus       202 -~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          202 -GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             -CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence             455555566667788889999999999999887654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.51  E-value=0.21  Score=41.31  Aligned_cols=75  Identities=5%  Similarity=-0.046  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004848          599 FGVALNQMGLACVQRYSI---NEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE  674 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  674 (727)
                      ...+.+++|+++.+..+.   .+++.+++..+..        +| ..-+.++.||..+.++|+|++|..+.+.++++   
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---  107 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---  107 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence            357888899999887754   5688888877765        56 46779999999999999999999999999976   


Q ss_pred             hcCCCChhHHHHHHH
Q 004848          675 KLGTANPDVDDEKRR  689 (727)
Q Consensus       675 ~~g~~~p~~~~~~~~  689 (727)
                           .|++..+...
T Consensus       108 -----eP~N~QA~~L  117 (134)
T 3o48_A          108 -----ERNNKQVGAL  117 (134)
T ss_dssp             -----CTTCHHHHHH
T ss_pred             -----CCCCHHHHHH
Confidence                 5666555433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.26  Score=54.46  Aligned_cols=124  Identities=13%  Similarity=0.074  Sum_probs=84.8

Q ss_pred             hccc-HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHh----CCCCc----
Q 004848          529 SMNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISKLRAI----GERKS----  596 (727)
Q Consensus       529 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~----~~~~~----  596 (727)
                      ..++ ++.|+.++++.....+..        .+++..+.+...   ..+--+|+..+.++++.....    .....    
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            3455 577888888876654432        222222222221   123456777777777543211    11110    


Q ss_pred             --hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          597 --AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       597 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                        +.....+..-+..+...|+++-|+++.++|+..        .|....+|+.|+.+|..+|+|+.|+-.+.-+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence              112345666788888999999999999999999        8999999999999999999999999888766

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.39  E-value=0.11  Score=42.98  Aligned_cols=67  Identities=13%  Similarity=0.006  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          642 LGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       642 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..+.+++|+++.+..+.   .+++.+++..+..        +| ...+.++.||..+.+.|+|++|. ++.+.+|+..|.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP~  110 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN  110 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence            46889999999998765   4577777766653        35 57899999999999999999999 999999999996

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.39  E-value=4.3  Score=44.91  Aligned_cols=82  Identities=12%  Similarity=0.027  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHH
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------RLDDAIEILEFVV  669 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al  669 (727)
                      .+.=|..||.+..+.+++++|++.|+.++..         .....++..|-.+|...+         +.+..+...-+.+
T Consensus       612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~---------RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~  682 (754)
T 4gns_B          612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA---------RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI  682 (754)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS---------SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence            4567889999999999999999999999964         344567888888898877         6677777766666


Q ss_pred             HHHHHhcCCCChhHHHHHHH
Q 004848          670 GIREEKLGTANPDVDDEKRR  689 (727)
Q Consensus       670 ~~~~~~~g~~~p~~~~~~~~  689 (727)
                      ...-+-+..-.|....++..
T Consensus       683 ~w~~RwY~efs~~l~~~l~k  702 (754)
T 4gns_B          683 SYDCRYYNYCQIFNLQLLEK  702 (754)
T ss_dssp             HHHHHTTBCCCHHHHHHHHH
T ss_pred             HHhhhcccccCHHHHHHHHH
Confidence            55555555555655554443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.24  E-value=0.35  Score=49.45  Aligned_cols=119  Identities=16%  Similarity=0.122  Sum_probs=86.2

Q ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCCCCchhHHHH
Q 004848          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGERKSAFFGVA  602 (727)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~  602 (727)
                      |......|+.+.|...+.+|+.++...+-..  ..            ...|-.+ ...+++.              ...+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~------------~~~w~~~~r~~l~~~--------------~~~a  173 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR------------DFQFVEPFATALVED--------------KVLA  173 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT------------TSTTHHHHHHHHHHH--------------HHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC------------chhHHHHHHHHHHHH--------------HHHH
Confidence            3344456889999999999998875331100  00            0111111 1111111              2345


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      +..++..+...|++.+|+..+..++..        +|..-.++..|..+|...|+..+|+..|+++......-+|-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~  241 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI  241 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            666788899999999999999999988        89888899999999999999999999999999988777773

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.23  E-value=0.19  Score=57.40  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE  336 (727)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  336 (727)
                      ......|++++|.+..+..-          ++    ..|..+|..+...|+++.|+.+|.++-.
T Consensus       660 ~~~l~~~~~~~A~~~~~~~~----------~~----~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDES----------AE----MKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTCC----------CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             ehhhhcCCHHHHHHHHHhhC----------cH----hHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            34567789998888765421          11    2489999999999999999999998643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.17  E-value=0.22  Score=41.74  Aligned_cols=69  Identities=14%  Similarity=0.029  Sum_probs=57.1

Q ss_pred             cHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          640 DTLGVYSNLAGTYDAIGRLD---DAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      -...+.+++|+++.+..+..   +++.+++..+..        +| ...+.++.||..+.+.|+|.+|. ++.+.+|+..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~e  107 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHE  107 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcC
Confidence            44568899999999987654   577777766652        33 57889999999999999999999 9999999999


Q ss_pred             hh
Q 004848          716 SR  717 (727)
Q Consensus       716 p~  717 (727)
                      |.
T Consensus       108 P~  109 (144)
T 1y8m_A          108 RN  109 (144)
T ss_dssp             CC
T ss_pred             CC
Confidence            96

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.87  E-value=0.22  Score=41.73  Aligned_cols=65  Identities=6%  Similarity=-0.031  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          599 FGVALNQMGLACVQRYSI---NEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      ...+.+++|+++....+.   .+++.+++..+..        +| ..-+.++.||..+.++|+|.+|..+.+.++++
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            357888899999887754   5678888877764        45 56779999999999999999999999999986

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.33  Score=50.56  Aligned_cols=171  Identities=11%  Similarity=0.025  Sum_probs=74.8

Q ss_pred             HHHHcCCHHHHHHHHHHHH--HHHH---hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-cC
Q 004848          401 ICETKGDHEAALEHLVLAS--MTMI---ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY-------QKALTAFKTN-KG  467 (727)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~  467 (727)
                      .+...+++++|..+-...+  ..+.   ....+...+.+|+.++.++...|+........       ...+..++.. ..
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456678888887765443  1221   11224556777888888888888776543221       1222222222 22


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      .+....+..+..+-+.|...+.|+.|..+..++.  +...  .......+..++.+|.++..+++|.+|.+++..|+...
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            2345667888899999999999999999998874  2111  12355678889999999999999999999999998766


Q ss_pred             HhCCCCCccHHHHHHHHHHHHHHcCCHH
Q 004848          548 NDAPGQQSTVAGIEAQMGVMYYMLGNYS  575 (727)
Q Consensus       548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~  575 (727)
                      +...........++..+..+-.-+|+..
T Consensus       301 p~~~~a~gfr~~a~K~lI~V~LLlG~iP  328 (523)
T 4b4t_S          301 PHNSKSLGFLQQSNKLHCCIQLLMGDIP  328 (523)
T ss_dssp             SCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence            5432222222333333333333356543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.71  E-value=3.4  Score=40.20  Aligned_cols=104  Identities=8%  Similarity=-0.122  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHhcCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR-ESKSYCENALRIYEKPVPGV  511 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~  511 (727)
                      .+++.-+..+...|++..|.++..-.++.+.+...   +........+..++.....-+ .=..+.++++....+.  +.
T Consensus        54 dlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~--g~  128 (312)
T 2wpv_A           54 ELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF--SE  128 (312)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT--SS
T ss_pred             HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc--CC
Confidence            33344455666777777777777667776666542   223334445555554433222 2345666777666543  11


Q ss_pred             ChHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 004848          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (727)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (727)
                      ........+..+|..|...|++.+|..+|-
T Consensus       129 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          129 YKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            122335567778888888888877777664

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.62  E-value=3.6  Score=40.05  Aligned_cols=175  Identities=8%  Similarity=-0.015  Sum_probs=101.2

Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      .+....+..++.-|.+++++++|++++...                     +..+.+.|++..|.++..-.++.+.+...
T Consensus        30 YEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~   88 (312)
T 2wpv_A           30 YEAHQTLRTIANRYVRSKSYEHAIELISQG---------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV   88 (312)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence            334455666666677777777777665544                     33444555566665555555555555433


Q ss_pred             CCchhHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH-----
Q 004848          594 RKSAFFGVALNQMGLACVQRYSIN-EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF-----  667 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----  667 (727)
                      ...   ......+..++.....-+ .=..+..+++....+..+. .-.....+..+|..|...|++.+|..+|-.     
T Consensus        89 ~~~---~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s  164 (312)
T 2wpv_A           89 KVD---DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY-KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDS  164 (312)
T ss_dssp             CCS---HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHH
T ss_pred             CCC---HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCcc
Confidence            322   223334444443322111 2256777888877665432 223445889999999999999999997742     


Q ss_pred             ---HHHHHHHhcCC---CChhHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHH
Q 004848          668 ---VVGIREEKLGT---ANPDVDDEKRRLA-ELLKEAGRVRSRKAQSLETLLDA  714 (727)
Q Consensus       668 ---al~~~~~~~g~---~~p~~~~~~~~La-~~~~~~g~~~~A~~~~l~~al~~  714 (727)
                         ...+.-+-...   ..|...+.+...+ ..|...|+...|. ..+....+.
T Consensus       165 ~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~-~~~~~f~~~  217 (312)
T 2wpv_A          165 MIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAH-ESKDIFLER  217 (312)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHH
Confidence               11111111111   4566666554444 3567889999999 888776654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.51  E-value=0.42  Score=54.06  Aligned_cols=105  Identities=10%  Similarity=-0.054  Sum_probs=82.4

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      .....|+.+-..|++.|+.++|..+|.+.......-...    ...+|+.|...|.+.|++++|.++|++..+.     |
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P----dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G  195 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL----TLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC----CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Confidence            344578889999999999999999998866543221111    2478999999999999999999999998764     2


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004848          636 PYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI  671 (727)
Q Consensus       636 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  671 (727)
                      - .|+.. +|..|-.++.+.|+. ++|..+|++....
T Consensus       196 ~-~PDvv-TYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          196 L-TPDLL-SYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             C-CCCHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             C-CCcHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            1 46654 788888899999985 7888999988764

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.44  E-value=4.1  Score=39.94  Aligned_cols=228  Identities=18%  Similarity=0.139  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (727)
Q Consensus       395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (727)
                      +..++.=|...++|++|++++                    +.-+..+...|++.-|.++..-.++.+.+..-+   ...
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL--------------------~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~---~~~   94 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDIL--------------------ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR---VDG   94 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH--------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---CCH
T ss_pred             HHHHHHHHHhhcCHHHHHHHH--------------------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---CCH
Confidence            444444455556666665544                    444566667777777777777777776665422   222


Q ss_pred             HHHHHHHHHHHHcCChH-HHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHH-----------
Q 004848          475 SVFVRLADMYNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK-----------  542 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----------  542 (727)
                      .....+..++.....-+ .=..+..+++....+.  +.........+..+|..|...+++.+|..+|-.           
T Consensus        95 ~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~  172 (336)
T 3lpz_A           95 ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLAR  172 (336)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHH
Confidence            44555555555544321 2245666777665542  222223356778899999999999999877621           


Q ss_pred             -HHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----------------CchhHHHHHH
Q 004848          543 -ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-----------------KSAFFGVALN  604 (727)
Q Consensus       543 -al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~  604 (727)
                       ..+..... + +.............|+..++...|...+....+.+......                 ..+..  -+.
T Consensus       173 mL~ew~~~~-~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--NFl  248 (336)
T 3lpz_A          173 MEYEWYKQD-E-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--NFI  248 (336)
T ss_dssp             HHHHHHHTS-C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--HHH
T ss_pred             HHHHHHHhc-C-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH--HHH
Confidence             11111221 1 22333333444556788999999999888777665332111                 01111  122


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcC
Q 004848          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIG  656 (727)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g  656 (727)
                      .+-.+-++.+..    ..|....+.+...... +| .....+..+|..|+...
T Consensus       249 ~lLllt~q~~~~----~lF~~L~~~Y~~~l~r-d~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          249 SMLLLSVQKGSP----DLFRQLKSKYEANLNE-LNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             HHHHHHHHSCCH----HHHHHHHHHTHHHHHT-TTTTTHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhcCCH----HHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHcCCC
Confidence            223344455543    4555555555544443 34 67778889999998664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.40  E-value=1.3  Score=45.19  Aligned_cols=103  Identities=12%  Similarity=-0.029  Sum_probs=80.3

Q ss_pred             HHHHHHcCChhHHHHHHHHhcccchhccCccc---h----------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH---A----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ  338 (727)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  338 (727)
                      |......|+.+.|...+.+|+.+.....-++.   +          .....+...++..+...|++.+|+..+..++.. 
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-  200 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-  200 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            44445578999999999999998642211111   1          122344567788899999999999999999988 


Q ss_pred             HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004848          339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (727)
Q Consensus       339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (727)
                             +|..-.++..+..++...|+..+|+..|+++......
T Consensus       201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~  237 (388)
T 2ff4_A          201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD  237 (388)
T ss_dssp             -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                   7888889999999999999999999999998876543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.37  E-value=0.42  Score=54.09  Aligned_cols=104  Identities=12%  Similarity=0.064  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004848          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      ...+|+.+-..|.+.|+.++|..+|.+..+....-.   .|+.. +|..|...|.+.|++++|.++|++..+.      .
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pdvv-TYNtLI~Glck~G~~~eA~~Lf~eM~~~------G  195 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLTLD-MYNAVMLGWARQGAFKELVYVLFMVKDA------G  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHT------T
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCCHh-HHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Confidence            456899999999999999999999988765433221   45544 8999999999999999999999988753      2


Q ss_pred             CChhHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHH
Q 004848          679 ANPDVDDEKRRLAELLKEAGRV-RSRKAQSLETLLDA  714 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~~l~~al~~  714 (727)
                      -.|+ ..+|..|-..+.+.|+. ++|. +.|++..+.
T Consensus       196 ~~PD-vvTYntLI~glcK~G~~~e~A~-~Ll~EM~~k  230 (1134)
T 3spa_A          196 LTPD-LLSYAAALQCMGRQDQDAGTIE-RCLEQMSQE  230 (1134)
T ss_dssp             CCCC-HHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHc
Confidence            3454 56788888899999985 6787 888877654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.66  E-value=5.8  Score=38.87  Aligned_cols=234  Identities=10%  Similarity=0.026  Sum_probs=121.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHh
Q 004848          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE  515 (727)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (727)
                      ..++.-|...++|++|++++......+-+..  ....-......+..+|...+-.-. .....+.++++...-  ...+ 
T Consensus        39 RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~--Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~--~~~p-  112 (336)
T 3lpz_A           39 RLVAARYSKQGNWAAAVDILASVSQTLLRSG--QGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQ--PGEP-  112 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSC--TTCH-
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHCC--CcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC--CCCc-
Confidence            3445567788888888887766554443332  011122222333355544432111 134444445544321  1111 


Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHH
Q 004848          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK--------NAISK  587 (727)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~  587 (727)
                                         .=..+..+++................+..+|..|++.+++.+|..+|-        ...++
T Consensus       113 -------------------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~m  173 (336)
T 3lpz_A          113 -------------------VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARM  173 (336)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHH
Confidence                               113355666666555322333445677889999999999999988872        11122


Q ss_pred             HHHh-CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--------C------CccHHH-HHHHHHHH
Q 004848          588 LRAI-GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP--------Y------HPDTLG-VYSNLAGT  651 (727)
Q Consensus       588 ~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~------~~~~~~-~~~~la~~  651 (727)
                      +-+. ....+.............|+..++...|..++....+.......+        .      .|.... -+..+..+
T Consensus       174 L~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLll  253 (336)
T 3lpz_A          174 EYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLL  253 (336)
T ss_dssp             HHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHH
Confidence            2111 111122223333333456778999999999888877765332110        0      111111 11222223


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                      -+..+.    ...|....+.+...+..+.|.....+..+|.+|+...
T Consensus       254 t~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          254 SVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             HHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred             HHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence            344554    3455555555555554443377888899999998653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.62  E-value=3.1  Score=35.67  Aligned_cols=176  Identities=13%  Similarity=-0.002  Sum_probs=104.8

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--H--------HH
Q 004848          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK--L--------RA  590 (727)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~--------~~  590 (727)
                      ..++.++.-.|.+..++-++..       .     ..+...+.-+.||.+..+|..|+..++..+.-  -        -+
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-------l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-------L-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-------C-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            4467777888888877665532       1     11345566788999999999999999998831  0        01


Q ss_pred             hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH----------HHHHcCChHH
Q 004848          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG----------TYDAIGRLDD  660 (727)
Q Consensus       591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~----------~~~~~g~~~~  660 (727)
                      ..-.++......+..+|.++.+.|+.++|+.+|......        .+-...+-..+-.          --...|+..-
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~--------~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i  176 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK--------SFLFSPVENLLLENKVPQKRDKENVRQTGRRGI  176 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHHHHHHHTTCCCCCC-----------CH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC--------ccccchHHHHHhhcCCCcccchHHHHhhhhccc
Confidence            111122234467888999999999999999999988776        3332221110000          0011122112


Q ss_pred             HHHHHHHHHHHHHHh-------cCCCChhHHH-HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          661 AIEILEFVVGIREEK-------LGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       661 A~~~~~~al~~~~~~-------~g~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      -.+++.....+.+.+       ....-|.... .....+..|+..|..++.. .+|..+...||.
T Consensus       177 ~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~  240 (242)
T 3kae_A          177 EEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred             hhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCC
Confidence            223333333332211       0122233322 2234577889999999999 999999999986

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.42  E-value=1.1  Score=39.26  Aligned_cols=102  Identities=11%  Similarity=-0.003  Sum_probs=66.8

Q ss_pred             HHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004848          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (727)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (727)
                      .....|+++.|.+..+..-.              -..|..||......|+++-|..+|.++-..                
T Consensus        14 LAL~lg~l~~A~e~a~~l~~--------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------   63 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKLND--------------SITWERLIQEALAQGNASLAEMIYQTQHSF----------------   63 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------
T ss_pred             HHHhcCCHHHHHHHHHHhCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------
Confidence            34677999999998775411              124899999999999999999999886443                


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA  418 (727)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a  418 (727)
                      ..+..+|...|+.+.-....+.    ....++         ++....+++..|+++++++.|.+.
T Consensus        64 ~~L~~Ly~~tg~~e~L~kla~i----A~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 DKLSFLYLVTGDVNKLSKMQNI----AQTRED---------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH----HHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHH----HHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            1233345556776544433333    222221         445556677888888888877543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.99  E-value=2  Score=37.78  Aligned_cols=101  Identities=13%  Similarity=0.008  Sum_probs=68.1

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (727)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (727)
                      ....|+++.|.+..+..             +....|..||......|+++-|+.+|+++-+                +..
T Consensus        15 AL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~~~   65 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------------FDK   65 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------HHH
T ss_pred             HHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------HHH
Confidence            45788999888875542             2346799999999999999999999988643                334


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (727)
Q Consensus       398 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (727)
                      +..+|...|+.+.-...-+.+.    ..++       +.....+++.+|+++++++.|.+.
T Consensus        66 L~~Ly~~tg~~e~L~kla~iA~----~~g~-------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           66 LSFLYLVTGDVNKLSKMQNIAQ----TRED-------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH----HTTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHH----HCcc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            5566777777765554443332    1111       122334667789999888887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.61  E-value=4  Score=48.30  Aligned_cols=182  Identities=9%  Similarity=0.026  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHH----------------HhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          519 GLTDVSSIYESMNELEQAIKLLQKALKIY----------------NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (727)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (727)
                      ..+.+|.++...|++++|..+|+++-.-.                .............|..+..++...+.++.++.+.+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34779999999999999999998763211                01111122334567788889999999999999999


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004848          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI  662 (727)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  662 (727)
                      .|++..   ....+......|..+=..+...|+|++|...+...-.         ......++..|...++..|..+.=.
T Consensus       924 lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          924 LADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             HHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhh
Confidence            998752   2222222344678888889999999999877754322         1222334555555455544433321


Q ss_pred             HH--------HHHHHHHHH-Hh-cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004848          663 EI--------LEFVVGIRE-EK-LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       663 ~~--------~~~al~~~~-~~-~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~  715 (727)
                      .+        .+..+.-.- .. .-...|..   |..|=-.+...|++..|..-.|+.+.++.
T Consensus       992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Y---y~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B          992 NYSMPTLRQDVDNLLERKAFQMINVESQPCW---YNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHhCCccccCCCH---HHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence            11        111111110 00 00222332   33344456677888888867788877664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.51  E-value=4.9  Score=47.56  Aligned_cols=102  Identities=11%  Similarity=-0.007  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          394 DRRLMGLICETKGDHEAALEHLVLASMTM-----------------IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (727)
Q Consensus       394 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (727)
                      ..+.+|.++...|++++|..+|.++..-+                 ............|..+..++...+.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35889999999999999999998872111                 1111122234567788889999999999999999


Q ss_pred             HHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004848          457 KALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCEN  499 (727)
Q Consensus       457 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (727)
                      .|++..    +.+.+. ....|..+-..+...|+|++|...+..
T Consensus       924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            998752    222333 334678888899999999999776643

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=90.93  E-value=0.73  Score=48.41  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG  670 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  670 (727)
                      ..++..||.+......+..|..+|.+|..+        .|.....+..||.+....|+.-+|+-+|-+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            357888999999999999999999999999        999999999999999999999999999998875

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.25  E-value=20  Score=36.34  Aligned_cols=131  Identities=11%  Similarity=0.053  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---C--------CCChhHHHHHHHH
Q 004848          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA---N--------DQDAEVASVDCSI  438 (727)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~--------~~~~~~~~~~~~l  438 (727)
                      +++|+..+.-......+  ..   ....+..+.....+.++|++++.........   .        ........+...+
T Consensus        59 ~~ly~~fi~~f~~kin~--L~---lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i  133 (393)
T 4b4t_O           59 LRLYDNFVSKFYDKINQ--LS---VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI  133 (393)
T ss_dssp             HHHHHHHHHHHHHHSCS--HH---HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCH--HH---HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence            45556555555544332  11   1112344556678899999998765322111   0        1123345667788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      +..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+...+-..+..+.
T Consensus       134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            9999999999999999999988887776555556677777788888899999988777777776654

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.23  E-value=12  Score=38.10  Aligned_cols=106  Identities=8%  Similarity=0.043  Sum_probs=78.5

Q ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHh----CC------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          524 SSIYESMNELEQAIKLLQKALKIYND----AP------GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~----~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      ..+.....+.++|++++++.......    ..      ........+...++..|...|+.++|..+++++-..+....+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            44556677899999998876433221    10      111234566778899999999999999999999999888877


Q ss_pred             CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      ..+...+..|...+..+...+++..+...+-..+..
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~  198 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST  198 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            777777778888888889999998877666665543

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=88.19  E-value=16  Score=33.82  Aligned_cols=184  Identities=14%  Similarity=0.124  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE  430 (727)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  430 (727)
                      -+..+|.+..+.++|++...+.+++....+...    .   .-.+.|..+|-. .|....+...+......-...+....
T Consensus         6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt----~---EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~   78 (248)
T 3uzd_A            6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLS----N---EERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKK   78 (248)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCC----H---HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHH
Confidence            355678888899999999999988876533221    1   123444444422 22223333332211111000111111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh---hHHHHHHHHHHHHHHcCC----------hHHHHH
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP---AVASVFVRLADMYNRTGK----------LRESKS  495 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~---~~~~~~~~la~~~~~~g~----------~~~A~~  495 (727)
                      ..     +..-|.. .=-.+=...+...+.+.....-+  ..+   .....+-..|..|...-.          .+.|..
T Consensus        79 ~~-----~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~  152 (248)
T 3uzd_A           79 IE-----MVRAYRE-KIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEK  152 (248)
T ss_dssp             HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHH-HHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence            11     1111100 00112233444455544433211  112   223334445666553321          357888


Q ss_pred             HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                      .|+.|..+....++..++-....+++.-...|.-+++.++|..+.++|+.-.-
T Consensus       153 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai  205 (248)
T 3uzd_A          153 AYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI  205 (248)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999998876565555544555555444455568999999998888776543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=86.97  E-value=1.7  Score=45.73  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      .++..+|++......+..|..+|.+|..+        .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            46778999999999999999999999999        8999999999999999999999999999988754

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=86.29  E-value=40  Score=36.39  Aligned_cols=128  Identities=12%  Similarity=0.017  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 004848          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (727)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (727)
                      ++.......+.+.|...+......    ..............++.-....+...++...+.++...        ..+...
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  287 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------SQSTSL  287 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------CCCHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhc----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--------CCChHH
Confidence            344444555888888887765432    11122223344444555555555355666666654332        222222


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                      . ..++......|++..|..++...-.        .........+.+|.++...|+.++|. ..|+++..
T Consensus       288 ~-e~~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~-~~~~~~a~  347 (618)
T 1qsa_A          288 I-ERRVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAK-EILHQLMQ  347 (618)
T ss_dssp             H-HHHHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred             H-HHHHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHH-HHHHHHhc
Confidence            2 2333334466999999998865432        22345777899999999999999999 88888764

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=85.68  E-value=12  Score=36.35  Aligned_cols=73  Identities=18%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004848          432 ASVDCSIGDTYLSL--SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       432 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (727)
                      ..++.+||.+-...  .....++.+|.+++...+..++..   ....|..+|..+++.+++.+|+..+-.|-...+..
T Consensus       255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~---HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y  329 (472)
T 3re2_A          255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH---HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY  329 (472)
T ss_dssp             HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC---CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence            34445555544332  112238899999999998888543   34667888999999999999999999998887764

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.25  E-value=7.9  Score=36.42  Aligned_cols=55  Identities=16%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      .++..|..++|+..+...++.        .|..+.....|..+++-.|+++.|...++.+.++
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            356789999999999888886        8999999999999999999999999988877766

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=84.04  E-value=28  Score=32.58  Aligned_cols=183  Identities=15%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCC
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQ  427 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~  427 (727)
                      .-+..+|.+..+.++|++...+.+++....  +...    .   .-.+.|..+|-. .|....+...+..........+.
T Consensus         9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt----~---EERnLLSvaYKNvig~rR~swRiissieqke~~k~~   81 (260)
T 1o9d_A            9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN   81 (260)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCC----H---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc
Confidence            445677888889999999999999988754  2211    1   123444444322 12223333333221111000011


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHHHcCC----------hHHHH
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTGK----------LRESK  494 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g~----------~~~A~  494 (727)
                       ..    ...+..-|.. .--.+=...+...+.+.....-+  ..+ ..+..+-..|..|...-.          .+.|.
T Consensus        82 -~~----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~  155 (260)
T 1o9d_A           82 -EE----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  155 (260)
T ss_dssp             -HH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             -HH----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence             11    1111111111 11122234455555555443211  112 222333344655543322          35788


Q ss_pred             HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004848          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (727)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (727)
                      ..|+.|..+....++..++-....+++.-...|.-+++.++|..+.++|+.-
T Consensus       156 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          156 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            8999999998765545444444444444444555689999998888777654

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=83.99  E-value=28  Score=32.56  Aligned_cols=183  Identities=14%  Similarity=0.099  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--hcCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCC
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIY--EKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAP  551 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~  551 (727)
                      .-+..+|.+..+.++|++...+++++....  ...        ...-.+.|..+|-. .|....+...+....+-.. ..
T Consensus         9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL--------t~EERnLLSvaYKNvig~rR~swRiissieqke~-~k   79 (260)
T 1o9d_A            9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQKEE-SR   79 (260)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC--------CHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-cc
Confidence            445678889999999999999999988863  111        11222333333322 2333334444333222111 11


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHHHHHh-----C-----CHHH
Q 004848          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKSAFFGVALNQMGLACVQR-----Y-----SINE  618 (727)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~  618 (727)
                      +....     ..+..-|.. .=-.+=.......+.++....   ...+......+-..|..|.-.     |     -.+.
T Consensus        80 ~~~~~-----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~  153 (260)
T 1o9d_A           80 GNEEH-----VNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES  153 (260)
T ss_dssp             TCHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CcHHH-----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence            21111     111111111 111222333444444443321   111111122223334444321     1     2367


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004848          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  672 (727)
                      |...|+.|.++......|.||-......+.+..|.. +++.++|..+.++++.-.
T Consensus       154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            899999999999888888999888888888887776 799999999888877543

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=83.89  E-value=8.7  Score=28.97  Aligned_cols=43  Identities=16%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE  263 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~  263 (727)
                      .+..+-.+|..+...|+ |++||++.++|...+.........+.
T Consensus        14 ~AH~~~RrAe~ll~~gk-ydeAIech~kAa~yL~eAmkltqs~q   56 (97)
T 2crb_A           14 LAHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTESEQ   56 (97)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             hhhHhhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            56677889999999998 99999999999998877765554433

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=83.80  E-value=25  Score=31.96  Aligned_cols=177  Identities=10%  Similarity=0.026  Sum_probs=100.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH----HHhcCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCCCC
Q 004848          479 RLADMYNRTGKLRESKSYCENALR----IYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      .+|.+..+.++|++...+.+++..    .... +       ...-.+.|..+|-. .|....+...+....   ....+.
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~e-L-------t~EERnLLSvAYKNvig~rR~swRiissiE---qkek~~   79 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSE-F-------DDEERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNN   79 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC-C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCC-C-------CHHHHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcCC
Confidence            678889999999999999999888    4211 1       11222333333322 222233333332211   111121


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHH
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-----QRYSINEAVELFEEARS  628 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  628 (727)
                      ..     ...+..-|... =-.+=.......+.+.....-+........+-..|..|.     ..|+.+.|...|+.|.+
T Consensus        80 ~~-----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~  153 (227)
T 2o8p_A           80 DE-----LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT  153 (227)
T ss_dssp             HH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHH
Confidence            11     11111112111 112223344555555554432221112222333344443     35678999999999999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 004848          629 ILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  672 (727)
                      +......|.||-......+.+.+|. -+++.++|..+.++|+.+.
T Consensus       154 iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          154 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            9998788889988887777777655 5789999999999998754

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=83.66  E-value=5.8  Score=30.03  Aligned_cols=49  Identities=20%  Similarity=0.045  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  269 (727)
                      .+..+...|...-..|+ |++|+.+|..|+..+-......+++..-..+.
T Consensus        15 ~A~~lv~~Ave~D~~g~-y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr   63 (86)
T 4a5x_A           15 AAATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTKRCNLR   63 (86)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            34567788888888886 99999999999999887766666655444333

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.63  E-value=8.4  Score=36.24  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=75.8

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---------------
Q 004848          609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE---------------  673 (727)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------  673 (727)
                      ..++.|.+++|+......++.        +|........|..+++-.|+++.|...++.+.++..               
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence            356788999999999999988        899999999999999999999999988877655421               


Q ss_pred             -----Hhc-C------CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          674 -----EKL-G------TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       674 -----~~~-g------~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                           +++ |      ...|........-+......|+.++|. ..-.+|++.-|.
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~ap~  132 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcCcc
Confidence                 111 1      112333334444566667789999999 999999988775

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.59  E-value=12  Score=33.52  Aligned_cols=87  Identities=6%  Similarity=-0.032  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCH
Q 004848          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY  574 (727)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  574 (727)
                      .++++++..+...-.-.+++....+|...+..+ ..+...++..+|.-....     +.....+..|...|..+...|++
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~  131 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF  131 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence            578888887766433355677788888887765 234356777777765543     33344577888999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 004848          575 SDSYDSFKNAISK  587 (727)
Q Consensus       575 ~~A~~~~~~al~~  587 (727)
                      .+|...|+.+++.
T Consensus       132 ~~A~~Vy~~GI~~  144 (202)
T 3esl_A          132 LEAKVLLELGAEN  144 (202)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999874

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=82.85  E-value=17  Score=36.04  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      ++.+|.+++...+..+...   ...-|..+|..+++.+++.+|+..+-.+-...+...
T Consensus       298 ~~~L~~~AI~sa~~~Y~n~---HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YN  352 (550)
T 3u84_A          298 PLTLYHKGIASAKTYYRDE---HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYN  352 (550)
T ss_dssp             HHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhccC---CccceeecchhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence            7889999999988887543   346778889999999999999999999988877653

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=82.21  E-value=30  Score=31.55  Aligned_cols=182  Identities=13%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004848          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAEVAS  433 (727)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (727)
                      .+|.+..+.++|++...+.+++...+......-..   .-.+.+..+|-. .|....+...+....   ........   
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~---EERnLLSvAYKNvig~rR~swRiissiE---qkek~~~~---   81 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNNDE---   81 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSCHH---
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCH---HHHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcCCHH---
Confidence            67888889999999999999988731111111111   223444444422 122222222222111   11101111   


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHhcCC
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-----RTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                       ...+..-|... =-.+=...+...+.+.....-+........+-..|..|.     ..|+.+.|...|+.|..+....+
T Consensus        82 -~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L  159 (227)
T 2o8p_A           82 -LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP  159 (227)
T ss_dssp             -HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred             -HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC
Confidence             11111112111 112234456667777666554332222333444455554     35668899999999999988655


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      +..++-....+++.-...|.-+++.++|..+.++|+.+.
T Consensus       160 ~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          160 DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            444444455555555556667899999999999998764

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=81.99  E-value=33  Score=31.96  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004848          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY  504 (727)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  504 (727)
                      +.|...|++|.++......+.+|.......+.+..|+. +++.++|..+.++|+.-.
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A  229 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA  229 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            67889999999999888888889888877888777776 799999988877776543

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=80.55  E-value=35  Score=31.36  Aligned_cols=184  Identities=14%  Similarity=0.092  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChh
Q 004848          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE  430 (727)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  430 (727)
                      -+..+|.+..+.++|++...+.+++....+...    .   .-.+.+..+|-. .|....+...+......-...+... 
T Consensus         7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt----~---EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~-   78 (234)
T 2br9_A            7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED-   78 (234)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH-
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCC----H---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchH-
Confidence            345678888889999999999999887533221    1   123444444422 1222222222221111000001100 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHHHcC----------ChHHHHHHH
Q 004848          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTG----------KLRESKSYC  497 (727)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g----------~~~~A~~~~  497 (727)
                          ...+..-|. ..=-.+=...+...+.+.....-+  ..+ .....+-..|..|...-          -.+.|...|
T Consensus        79 ----~~~~i~~yr-~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY  153 (234)
T 2br9_A           79 ----KLKMIREYR-QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAY  153 (234)
T ss_dssp             ----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHH
Confidence                011111111 111122233445555554443211  112 12223334455554322          235788899


Q ss_pred             HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                      +.|+.+....+++.++-....+++.-...|.-+++.++|..+.++|+.-.-
T Consensus       154 ~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai  204 (234)
T 2br9_A          154 KAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI  204 (234)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999876554554444444444444455568999999998888776543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.30  E-value=12  Score=33.33  Aligned_cols=87  Identities=7%  Similarity=-0.025  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC
Q 004848          243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG  322 (727)
Q Consensus       243 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  322 (727)
                      .++++++..+.....-..++.....|...+..+ ..+...++..+|......   ..|.....    .|...|..+...|
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~IG~~~Al----fYe~wA~~lE~~g  129 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---GIGTKLSL----FYEEFSKLLENAQ  129 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---TSSTTBHH----HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---CCcHHHHH----HHHHHHHHHHHcC
Confidence            678888888876655566788888887777765 234466888888876654   23444443    3888999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 004848          323 QLENSLMCYTTGLEV  337 (727)
Q Consensus       323 ~~~~A~~~~~~al~~  337 (727)
                      ++.+|...|+.+++.
T Consensus       130 ~~~~A~~Vy~~GI~~  144 (202)
T 3esl_A          130 FFLEAKVLLELGAEN  144 (202)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999999987

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=80.23  E-value=25  Score=34.95  Aligned_cols=58  Identities=17%  Similarity=0.176  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004848          450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (727)
Q Consensus       450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (727)
                      .++.+|++|+...+..+...+   ...|..+|-.+++.++|.+|+..+-.+-.........
T Consensus       282 ~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~  339 (489)
T 4gq4_A          282 DPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYC  339 (489)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccc
Confidence            467899999999998885443   5778889999999999999999999998887765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	727
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-23
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-21
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-21
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-18
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-10
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-10
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 4e-23
 Identities = 57/475 (12%), Positives = 138/475 (29%), Gaps = 89/475 (18%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
            ++ A     +GD  + A    ++  +            +    L ++++I+    + + 
Sbjct: 2   PMELAHREYQAGDF-EAAERHCMQLWRQEP---------DNTGVLLLLSSIHFQCRRLDR 51

Query: 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343
           +      +I+                 +  L + Y+ LG +          +E  +  L 
Sbjct: 52  SAHFSTLAIKQ----------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95

Query: 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE 403
                +       A            Q +                           +  +
Sbjct: 96  LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL---------------YCVRSD 140

Query: 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
                +A        +  + A +     A    ++G  + +      A   ++KA+    
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV---- 196

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523
                  P     ++ L ++         + +    AL +             A    ++
Sbjct: 197 ----TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---------AVVHGNL 243

Query: 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583
           + +Y     ++ AI   ++A+++                 +       G+ +++ D +  
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPH-------FPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
           A+        R       +LN +     ++ +I EAV L+ +A  +         P+   
Sbjct: 297 AL--------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA 340

Query: 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698
            +SNLA      G+L +A+   +  + I        +P   D    +   LKE  
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 7/68 (10%)

Query: 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578
           G  +++       + E A +   +  +   D  G       +   +  +++       S 
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTG-------VLLLLSSIHFQCRRLDRSA 53

Query: 579 DSFKNAIS 586
                AI 
Sbjct: 54  HFSTLAIK 61

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 95.0 bits (234), Expect = 1e-21
 Identities = 43/366 (11%), Positives = 109/366 (29%), Gaps = 17/366 (4%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
             + A +  + G  +EA  + + ++E           +A       LG+     G+L  S
Sbjct: 15  NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA----TSVLGEVLHCKGELTRS 70

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           L       ++ +Q   +       +    +E          A +  + A  +  +     
Sbjct: 71  LALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 128

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
                   R+   +       + A      + + ++++ Q  +       +    L+   
Sbjct: 129 LPMHEFLVRIRAQLLWAWARLDEAEASA-RSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 187

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507
            D A     +           +   +++        +  TG    + ++  +  +     
Sbjct: 188 LDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246

Query: 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567
              +  +               + E E A  +L++  +    +    S +      +  +
Sbjct: 247 NHFLQGQWRNIAR-----AQILLGEFEPAEIVLEELNENAR-SLRLMSDLNRNLLLLNQL 300

Query: 568 YYMLGNYSDSYDSFKNAISKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEA 626
           Y+  G  SD+     +A+      G        G A+ Q     +Q  ++ E  +    A
Sbjct: 301 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ--HRA 358

Query: 627 RSILEQ 632
           + IL +
Sbjct: 359 QRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 93.4 bits (230), Expect = 4e-21
 Identities = 43/368 (11%), Positives = 100/368 (27%), Gaps = 14/368 (3%)

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           D    E     A+  +      EA++  ++AL+                  ++G +   K
Sbjct: 8   DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCK 64

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           G+   +L  +         +D             +   +      A    +KA       
Sbjct: 65  GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
             E  P    +    A +     +L       E + R   + +    P++    L  +  
Sbjct: 125 HLEQLPMHEFLVRIRAQLLWAWARLD----EAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
              +  +L+ A   L +   +  +       ++       + + M G+ + + +  ++  
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
                     + F       +  A +       A  + EE              D     
Sbjct: 241 ----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN--ARSLRLMSDLNRNL 294

Query: 646 SNLAGTYDAIGRLDDAIEILEFVVGI-REEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704
             L   Y   GR  DA  +L   + +       +      +   +    L +   +   +
Sbjct: 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354

Query: 705 AQSLETLL 712
               + +L
Sbjct: 355 QHRAQRIL 362

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 84.6 bits (207), Expect = 4e-18
 Identities = 39/333 (11%), Positives = 101/333 (30%), Gaps = 17/333 (5%)

Query: 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275
           +          +A+  I+ G+ P +A  LA  A +              ++   V+  + 
Sbjct: 7   EDTMHAEFNALRAQVAINDGN-PDEAERLAKLALEELP----PGWFYSRIVATSVLGEVL 61

Query: 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL 335
              G+   ++ +++Q+ ++    +   +AL      +Q  +     G L+ +        
Sbjct: 62  HCKGELTRSLALMQQTEQMARQHDVWHYAL---WSLIQQSEILFAQGFLQTAWETQEKAF 118

Query: 336 EVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
           ++  +   E  P      R  A+      +  EA+   +  +++         L+     
Sbjct: 119 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ--CLA 176

Query: 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
            L+           A  +   L ++          +++ +      +        A    
Sbjct: 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
           +            N+  +   +  +A      G+   ++   E                +
Sbjct: 237 RHTAKPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSD 289

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548
           +   L  ++ +Y        A ++L  ALK+ N
Sbjct: 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 22/236 (9%), Positives = 51/236 (21%), Gaps = 10/236 (4%)

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
            +        + + A +  +  + +EA       IE+    + Q+               
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
             +                            +    +            + A  + +   
Sbjct: 186 GDLDNARSQLNRLEN-----LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
                N            R +       G+ E A   L   +    +    +++      
Sbjct: 241 KPEFANNHF----LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296

Query: 438 IGDTYLSLSRYDEAGFAYQKALT-AFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
           +   Y    R  +A      AL  A +T    +         +      +   L E
Sbjct: 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 36/243 (14%), Positives = 72/243 (29%), Gaps = 18/243 (7%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           E A +       Y      + AG ++ KA    K  K  N     + +V     +   G 
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQK--KAGNEDEAGNTYVEAYKCFKSGGN 92

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
              +    ENA++I+               L ++  +   +++  +AI   + A + Y  
Sbjct: 93  SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI--LENDLHDYAKAIDCYELAGEWYA- 149

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609
                +       +   +  + G Y ++ D +   I         + +       + GL 
Sbjct: 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD-YFLKKGLC 208

Query: 610 CVQRYSINEAVELFEEARSI------------LEQECGPYHPDTLGVYSNLAGTYDAIGR 657
            +       A    +E +S             L+      +       S     +D   R
Sbjct: 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268

Query: 658 LDD 660
           LD 
Sbjct: 269 LDK 271

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 29/236 (12%), Positives = 65/236 (27%), Gaps = 10/236 (4%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           Q    Y +  +L  +   +    + QK+     +   G T     +          A   
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432
            + A+ I    G            L  ++     D+  A++   LA      +   A   
Sbjct: 100 LENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
                  D      +Y EA   Y K + +   N+  +  ++   F++             
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVA 217

Query: 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKI 546
           +    +          P       ++ L  +       +  +L +  K     +++
Sbjct: 218 AARTLQEGQSED----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 4/153 (2%)

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
           EE A      ++IY    EL  A     KA        G +        +    +   GN
Sbjct: 34  EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGN 92

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
             ++ DS +NAI      G +             +     +   +A++ +E A     Q+
Sbjct: 93  SVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                  +   +   A      G+  +A +I  
Sbjct: 152 Q--SVALSNKCFIKCADLKALDGQYIEASDIYS 182

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 6e-10
 Identities = 28/271 (10%), Positives = 70/271 (25%), Gaps = 52/271 (19%)

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
            ++   L Q+  +       +   +     +   + +     L+          ++ +++
Sbjct: 3   LQSAQYLRQAEVLK-----ADMTDS----KLGPAEVWTSRQALQ----------DLYQKM 43

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           L  TD           E  +    F       Q      K+  +P   E  A   L   +
Sbjct: 44  L-VTDLEYALD--KKVEQDLWNHAFKNQITTLQ---GQAKNRANPNRSEVQA--NLSLFL 95

Query: 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461
               G +   L+ L          + D         +G      +           + + 
Sbjct: 96  EAASGFYTQLLQEL------CTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS- 148

Query: 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
                           V L D+     +  +++SY  +A ++                  
Sbjct: 149 ---------YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP---------SNGQPYN 190

Query: 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
            ++ +  S  +    I    +++ +    P 
Sbjct: 191 QLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 31/241 (12%), Positives = 60/241 (24%), Gaps = 46/241 (19%)

Query: 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483
           A    A++        + + S     +    YQK L                     A  
Sbjct: 12  AEVLKADMTDSKLGPAEVWTSRQALQDL---YQKML--------VTDL-------EYALD 53

Query: 484 YNRTGKLRESKSY-CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
                 L           L+   K        E+ + L+    +  +     Q ++ L  
Sbjct: 54  KKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLF--LEAASGFYTQLLQELCT 111

Query: 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602
              +      + S       Q+G++     + S       ++ S +              
Sbjct: 112 VFNVDLPCRVKSS-------QLGIISNKQTHTSAIVKPQSSSCSYICQ----------HC 154

Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662
           L  +G     R   ++A   +  A  +         P     Y+ LA    + G     I
Sbjct: 155 LVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTI 206

Query: 663 E 663
            
Sbjct: 207 F 207

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 15/154 (9%), Positives = 40/154 (25%), Gaps = 35/154 (22%)

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--------------- 579
           Q+ + L++A  +       ++ +   +     ++       D Y                
Sbjct: 4   QSAQYLRQAEVL-------KADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKV 56

Query: 580 -------SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
                  +FKN I+ L+   + ++       N+  +       +  A   + +    L  
Sbjct: 57  EQDLWNHAFKNQITTLQGQAKNRAN-----PNRSEVQANLSLFLEAASGFYTQLLQELCT 111

Query: 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666
                        S L    +        ++   
Sbjct: 112 VFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQS 144

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 43/309 (13%), Positives = 83/309 (26%), Gaps = 44/309 (14%)

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
           GL    +GD   A+     A        QD +       +G T     +   A  A ++ 
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAV------QQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79

Query: 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518
           L     N+        S                       + LR        V P E  +
Sbjct: 80  LELKPDNQTALMALAVSFTNESLQRQACE--------ILRDWLRYTPAYAHLVTPAEEGA 131

Query: 519 GLTDVSSIY------ESMNELEQAIKLLQKALKIYND------------APGQQSTVAGI 560
           G   +           S +   +  +L   A+++                          
Sbjct: 132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF---------FGVALNQMGLACV 611
                    +  N    ++     ++      E  +A+         +  +   +G++C+
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251

Query: 612 QRYSINEAVELFEEARSILEQECGPYHPD---TLGVYSNLAGTYDAIGRLDDAIEILEFV 668
              +  EAVE F EA ++  +  GP       +  ++S L      +G+ D         
Sbjct: 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311

Query: 669 VGIREEKLG 677
           +       G
Sbjct: 312 LSTLLTMFG 320

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 9e-08
 Identities = 36/322 (11%), Positives = 86/322 (26%), Gaps = 35/322 (10%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                  G    A+ + E +++        +H  A       LG T A   Q   ++   
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEA----WQYLGTTQAENEQELLAISAL 76

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              LE++          +  +    +          +  ++      +       A    
Sbjct: 77  RRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 135

Query: 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451
               + +     +        E  + A    +  D  +    V C +G  +     YD+A
Sbjct: 136 LGPSKRILGSLLSDSLFLEVKELFLAA----VRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
              +  AL+    +    +                  +  E+ +    AL +        
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLG--------ATLANGNQSEEAVAAYRRALELQPG----- 238

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----MGVM 567
                     ++     ++    +A++   +AL +   + G +     +       + + 
Sbjct: 239 ----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 294

Query: 568 YYMLGNYSDSYDSFKNAISKLR 589
             MLG       +    +S L 
Sbjct: 295 LSMLGQSDAYGAADARDLSTLL 316

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 28/204 (13%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
                I     S   + E   +   ++ +       +           LG  + + G+ +
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV-------QCGLGVLFNLSGEYD 189

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
            ++ C+T  L V+                 L        Q  EA    + AL++      
Sbjct: 190 KAVDCFTAALSVRPND--------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-- 239

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLA-----SMTMIANDQDAEVASVDCSIGD 440
                    R  +G+ C   G H  A+EH + A            +  A   ++  ++  
Sbjct: 240 ------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293

Query: 441 TYLSLSRYDEAGFAYQKALTAFKT 464
               L + D  G A  + L+   T
Sbjct: 294 ALSMLGQSDAYGAADARDLSTLLT 317

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM--QLGDTYAMLG 322
           +   + +     +LG + EA+    +++ +     G        + ++   L    +MLG
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 323 QLENSLMCYTTGLEVQKQVLG 343
           Q +         L     + G
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 26/157 (16%)

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           +     + + A+         +          + I   +G MY +L N +++  +F  +I
Sbjct: 14  LAADKKDWKGALDAFSAVQDPH----------SRICFNIGCMYTILKNMTEAEKAFTRSI 63

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE--------QECGPY 637
           ++ + +             Q G+   Q    + A++  +EA   L              +
Sbjct: 64  NRDKHLAVAY--------FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 115

Query: 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674
                 V  N+A  Y        A E L     ++ E
Sbjct: 116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 26/171 (15%)

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
           SL EA      G++   K D + AL+            D  + +     +IG  Y  L  
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAF------SAVQDPHSRIC---FNIGCMYTILKN 51

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI---- 503
             EA  A+ +++             +A  + +   +Y +T K   +    + AL      
Sbjct: 52  MTEAEKAFTRSI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

Query: 504 ----YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
               Y+              L +++ +Y    E ++A + L  A  + ++ 
Sbjct: 104 QLIDYKILGLQFKLFACEV-LYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 28/166 (16%)

Query: 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320
           SL   + L     +      +  A+       +         H+         +G  Y +
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRI----CFNIGCMYTI 48

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
           L  +  +   +T  +   K         +          + Q  ++  A K  + AL   
Sbjct: 49  LKNMTEAEKAFTRSINRDKH--------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 100

Query: 381 KDNGSPASLEEAADRRL--------MGLICETKGDHEAALEHLVLA 418
           + N            +L        +  +   K + + A E L LA
Sbjct: 101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 39/305 (12%), Positives = 73/305 (23%), Gaps = 52/305 (17%)

Query: 397 LMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
           ++ +  +     E  L  +  +LAS        D E A +    G  Y SL     A   
Sbjct: 4   VLAVPLQPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSLGLRALARND 59

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           + +A            P +  VF  L     + G    +    ++ L +           
Sbjct: 60  FSQA--------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
            IA                + A   L    +   + P +          + +    L   
Sbjct: 112 GIA---------LYYGGRDKLAQDDLLAFYQDDPNDPFRS-------LWLYLAEQKLDEK 155

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
                  ++           K  +    +        ++  +        +         
Sbjct: 156 QAKEVLKQHFEKS------DKEQWGWNIVEFYLGNISEQTLMERLKADATDNT------- 202

Query: 635 GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694
                        L   Y ++G LD A  + +  V          N     E R     L
Sbjct: 203 -SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFVEHRYALLEL 253

Query: 695 KEAGR 699
              G+
Sbjct: 254 SLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 8/236 (3%)

Query: 230 ELISSGDNPQKALELAL-RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288
           E+++    P    E+ L R  +     A      E    L+    +Y SLG    A    
Sbjct: 3   EVLAVPLQPTLQQEVILARMEQILASRALTDD--ERAQLLYERGVLYDSLGLRALARNDF 60

Query: 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348
            Q++ I        + L  +       D           L        + + +      R
Sbjct: 61  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120

Query: 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH 408
                  L   +           +  +A     +  +   L++  ++           + 
Sbjct: 121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 180

Query: 409 EAALEHLVLASMTMIANDQDA-----EVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
                        + A+  D       ++  +  +G  YLSL   D A   ++ A+
Sbjct: 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G+       +D A   Y KA         E  P   +     A +Y   G   + +  C
Sbjct: 10  LGNDAYKKKDFDTALKHYDKA--------KELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
           E A+ +  +          A     + + Y    + + AI    K+L  +   
Sbjct: 62  EKAIEVGRENREDYRQIAKAY--ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 24/149 (16%)

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           ++A   + +G     K D + AL+H         A + D    +   +    Y     Y+
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHY------DKAKELDPTNMTYITNQAAVYFEKGDYN 55

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           +     +KA+   + N  E++  +A  + R+ + Y +  K +++  +   +L  +  P  
Sbjct: 56  KCRELCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-- 112

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIK 538
                           + +   + E+ +K
Sbjct: 113 ---------------DVLKKCQQAEKILK 126

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 29/180 (16%)

Query: 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
           S  +L+QA++LL +A+K            A + +    +  + G++         A  +L
Sbjct: 8   SEGQLQQALELLIEAIKASPKD-------ASLRSSFIELLCIDGDFER-------ADEQL 53

Query: 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648
               +    +   A     L         +A +  ++              + L      
Sbjct: 54  MQSIKLFPEYLPGASQLRHLV--------KAAQARKDFAQGAATAKVLGENEELTKSLVS 105

Query: 649 AGTYDAIGRLDDAIEILEFVVGIREEKLGTANP-------DVDDEKRRLAELLKEAGRVR 701
                     +   E+   +  +R+EK   AN        D+DD      EL   AG   
Sbjct: 106 FNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFSTAGNYF 165

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 28/326 (8%), Positives = 72/326 (22%), Gaps = 54/326 (16%)

Query: 224 LLKQARELISSGDNPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ 280
             +   +   +G+  +  LEL    L A   F    N +   E++  L    +   S   
Sbjct: 31  ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR--EVLQHLETEKSPEESAAL 88

Query: 281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340
               +  LE  + +             +          + L +       +   LE+  +
Sbjct: 89  VKAELGFLESCLRVNPKS---------YGTWHHRCWLLSRLPE-----PNWARELELCAR 134

Query: 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400
            L   +            A   A+  +E   F    +  +  N S               
Sbjct: 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS--------WHYRSC 186

Query: 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
           +         +     L    ++              +          D++ + Y +   
Sbjct: 187 LLPQLHPQPDSGPQGRLPENVLLKE----------LELVQNAFFTDPNDQSAWFYHR--- 233

Query: 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520
                                +         ES    +      +              +
Sbjct: 234 -----WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW---------CLLTI 279

Query: 521 TDVSSIYESMNELEQAIKLLQKALKI 546
             +    + +   ++ ++       +
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAV 305

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 23/242 (9%), Positives = 45/242 (18%), Gaps = 35/242 (14%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
                S +         +  L     +                               C 
Sbjct: 80  KSPEESAALVKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCA 133

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
             L   E+                            QA     + L   +    +  +  
Sbjct: 134 RFLEADERNFH---------------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178

Query: 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE-----RKSAFFGVALNQMGLACVQR 613
                   +   L    DS    +   + L    E       +     +        + R
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238

Query: 614 YSINEAVELFEEARSILEQ---------ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664
                  EL  E  ++L+          E  P +   L     L    D +    + ++ 
Sbjct: 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 298

Query: 665 LE 666
             
Sbjct: 299 FS 300

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G+  LS+   D+A   Y +A+     N        A+   +           +      +
Sbjct: 10  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
                  K                  +  E +N  E+A +  ++ LK   + P  +  + 
Sbjct: 70  WGKGYSRKA-----------------AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112

Query: 559 GIEAQ 563
            +EA+
Sbjct: 113 NMEAR 117

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
           ++ +  +S+    +    +Q               A  SV       Y            
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEK------------AAGSVSKSTQFEYAWCLVRTRYNDD 51

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556
               + + E+ +P    EE    +  ++     + E E+A+K ++  L+        +  
Sbjct: 52  IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111

Query: 557 VAGIEAQMG 565
              I+  M 
Sbjct: 112 ERLIDKAMK 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	727
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.93
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.81
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.74
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.73
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.72
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.4
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.38
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.32
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.31
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.28
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.27
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.26
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.25
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.24
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.2
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.17
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.1
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.04
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.96
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.91
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.47
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.2
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.46
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.19
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.03
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.33
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	95.12
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.11
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	92.85
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	92.11
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.87
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	91.34
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	90.2
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	88.55
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.55
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	85.31
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.93

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=296.05  Aligned_cols=387  Identities=19%  Similarity=0.209  Sum_probs=336.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc
Q 004848          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (727)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (727)
                      ++.+|..+++.|+ |++|+..|+++++..         |....++..+|.+|...|++++|+.+|++++++.     +.+
T Consensus         2 ll~la~~~~~~G~-~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~   66 (388)
T d1w3ba_           2 PMELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL   66 (388)
T ss_dssp             CCTHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             hHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Confidence            3568999999997 999999999999863         4457789999999999999999999999999885     444


Q ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (727)
Q Consensus       304 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (727)
                      +    .++..+|.+|..+|++++|+..+..++..        .+.........+......+.+..+..............
T Consensus        67 ~----~a~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (388)
T d1w3ba_          67 A----EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL  134 (388)
T ss_dssp             H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred             H----HHHHHHHHHhhhhcccccccccccccccc--------cccccccccccccccccccccccccccccccccccccc
Confidence            3    35899999999999999999999999988        67777778888888888888888777776665544333


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (727)
Q Consensus       384 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (727)
                      .        ......+......+....+...+.+.+.      ..|....++..+|.++...|++++|...+++++.+  
T Consensus       135 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--  198 (388)
T d1w3ba_         135 Y--------CVRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--  198 (388)
T ss_dssp             T--------HHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--
T ss_pred             c--------cccccccccccccchhhhhHHHHHHhhc------cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--
Confidence            2        3466778888888999999998887764      24566778899999999999999999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 004848          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (727)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (727)
                            +|....++..+|.++...|++++|+..++++....         +.....+..+|.++...|++++|+.+|+++
T Consensus       199 ------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         199 ------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---------PNHAVVHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             ------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                  78889999999999999999999999999999882         334677889999999999999999999999


Q ss_pred             HHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004848          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (727)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  623 (727)
                      +++.+..       ..++..+|.++...|++++|+..|+.++...        +....++..+|.++...|++++|+.+|
T Consensus       264 l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~  328 (388)
T d1w3ba_         264 IELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--------CccchhhhHHHHHHHHCCCHHHHHHHH
Confidence            9876544       5788999999999999999999999988752        234578899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004848          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR  699 (727)
Q Consensus       624 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~  699 (727)
                      ++++++        +|+...+++.+|.+|..+|++++|+.+|++++++        +|+...++.+||.+|.++||
T Consensus       329 ~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         329 RKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence            999988        8888999999999999999999999999999976        78889999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-31  Score=279.37  Aligned_cols=369  Identities=18%  Similarity=0.257  Sum_probs=320.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (727)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (727)
                      ..+|..+++.|+|++|+..|+++++..     |.++    .++..+|.+|...|++++|+.+|+++++.        +|.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~   65 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPL   65 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            357899999999999999999999875     4443    35889999999999999999999999999        788


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (727)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (727)
                      ...++..+|.+|...|++++|+..+..++...+...        ......+......+.+..+..........      .
T Consensus        66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  131 (388)
T d1w3ba_          66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI--------DGYINLAAALVAAGDMEGAVQAYVSALQY------N  131 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHSCSSHHHHHHHHHHHH------C
T ss_pred             CHHHHHHHHHHhhhhccccccccccccccccccccc--------ccccccccccccccccccccccccccccc------c
Confidence            999999999999999999999999999988765442        34566667777777777776666544321      2


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (727)
                      ..........+......+....+...+.+.+..        .|....++..+|.++...|++++|...+++++.+     
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  198 (388)
T d1w3ba_         132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----  198 (388)
T ss_dssp             TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----
T ss_pred             cccccccccccccccccchhhhhHHHHHHhhcc--------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh-----
Confidence            222345566777888899999999999998887        7888999999999999999999999999999998     


Q ss_pred             CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                          .|....++..+|.++...|++++|+..++++..+.+..       ...+..+|.++...|++++|+.+|++++++ 
T Consensus       199 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-  266 (388)
T d1w3ba_         199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-  266 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred             ----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence                44557789999999999999999999999998875443       567889999999999999999999999885 


Q ss_pred             HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV  668 (727)
Q Consensus       589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  668 (727)
                             .+....++..+|.++...|++++|+..|+.++..        .|....++..+|.++...|++++|+.+|+++
T Consensus       267 -------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  331 (388)
T d1w3ba_         267 -------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             -------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence                   1224578999999999999999999999999988        7888889999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          669 VGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +++        +|+...++..+|.+|...|++++|+ ..|+++++++|+
T Consensus       332 l~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~P~  371 (388)
T d1w3ba_         332 LEV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPT  371 (388)
T ss_dssp             TTS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTT
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            965        6888999999999999999999999 999999999997

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2e-22  Score=207.16  Aligned_cols=353  Identities=12%  Similarity=0.050  Sum_probs=293.7

Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004848          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      +..+++....|.++...|++++|+.++++++...+..   .....+.++..+|.++...|++++|+.+|++++.+....+
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~---~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC---CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            3456777788999999999999999999999987654   3344567889999999999999999999999999988888


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      ..+.....+..++.++...|++..|...+.+++.+.........+....++..+|.++...|+++.|..++.+++.....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence            88888999999999999999999999999999999988877777788889999999999999999999999999998765


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                      .    .......++..++.++...+++.++...+.++..+.............++..++.++...|++++|..++++++.
T Consensus       166 ~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  241 (366)
T d1hz4a_         166 Y----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK  241 (366)
T ss_dssp             S----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             h----hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3    244556788899999999999999999999999998877555556677788899999999999999999998776


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE  666 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  666 (727)
                      ..    ...+......+..+|.++...|++++|+.++++++........  .|....++..+|.+|..+|++++|+.+|+
T Consensus       242 ~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         242 PE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             CC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hc----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            42    2233445677888999999999999999999999998877544  67888899999999999999999999999


Q ss_pred             HHHHHHHHhcCC-CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          667 FVVGIREEKLGT-ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       667 ~al~~~~~~~g~-~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                      +++.+.....-. ........+..+...+...++.+++.....++++
T Consensus       316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll  362 (366)
T d1hz4a_         316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL  362 (366)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            999987653110 0011223455566667788888888723344443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3e-21  Score=198.21  Aligned_cols=346  Identities=11%  Similarity=0.007  Sum_probs=282.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 004848          263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL  342 (727)
Q Consensus       263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  342 (727)
                      ..+.+....|.+++..|++++|+.+|++++...+    ...+...+.++..+|.+|...|++++|+..|++++.+.... 
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~----~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-   84 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc----CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence            3456677789999999999999999999998752    22333455678999999999999999999999999987653 


Q ss_pred             CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (727)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  422 (727)
                       .+.+....++..++.++...|++..|...+.+++.+.+..........+.++..+|.++...|+++.+..++.++....
T Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_          85 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  163 (366)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence             2235667788999999999999999999999999999988777777777888999999999999999999999998766


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004848          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (727)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (727)
                      ..... .....++..++..+...+++.++...+.++........ ...+....++..++.++...|++++|..++++++.
T Consensus       164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  241 (366)
T d1hz4a_         164 SSYQP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK  241 (366)
T ss_dssp             TTSCG-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             hhhhh-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            55443 44567788899999999999999999999998876654 23455677888899999999999999999998876


Q ss_pred             HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004848          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (727)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (727)
                      ...     ...+.....+..+|.++...|++++|+.++++++...... +..+....++..+|.+|..+|++++|+.+++
T Consensus       242 ~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         242 PEF-----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             CCC-----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcc-----ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            532     2344556778899999999999999999999999998876 6666778889999999999999999999999


Q ss_pred             HHHHHHHHhCCCCch-hHHHHHHHHHHHHHHhCCHHHHHHH
Q 004848          583 NAISKLRAIGERKSA-FFGVALNQMGLACVQRYSINEAVEL  622 (727)
Q Consensus       583 ~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~  622 (727)
                      +++.+....+..... .....+..+...+...++.+++...
T Consensus       316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999998776543211 0123344455556666777776654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-22  Score=204.74  Aligned_cols=283  Identities=16%  Similarity=0.113  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (727)
Q Consensus       268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (727)
                      .+..|..++..|++++|+..|+++++..     |.++    .+|..+|.++...|++++|+.+|.+++++        +|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHM----EAWQYLGTTQAENEQELLAISALRRCLEL--------KP   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCChHHHHHHHHhhhcc--------cc
Confidence            4578999999999999999999999885     4443    35999999999999999999999999999        78


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH-HHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL-EEAA------DRRLMGLICETKGDHEAALEHLVLASM  420 (727)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~a~------~~~~l~~~~~~~g~~~~A~~~~~~al~  420 (727)
                      ....++..+|.+|...|++++|+..+++++.+.+........ ....      ........+...+.+.+|+..|.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999877653221100 0000      111122334556778889999988875


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004848          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (727)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (727)
                      +..    ....+.++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|+++
T Consensus       165 ~~p----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         165 LDP----TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HST----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hhh----cccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHHH
Confidence            421    1223567889999999999999999999999998        7888999999999999999999999999999


Q ss_pred             HHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHHcCCHHH
Q 004848          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS----TVAGIEAQMGVMYYMLGNYSD  576 (727)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~  576 (727)
                      +++         .|....++..+|.+|..+|++++|+.+|++++++.+...+...    ....++..++.++...++.+.
T Consensus       233 l~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         233 LEL---------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHH---------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            998         3445778999999999999999999999999999987644321    233456778888888888877


Q ss_pred             HHHHHHHHHHHH
Q 004848          577 SYDSFKNAISKL  588 (727)
Q Consensus       577 A~~~~~~al~~~  588 (727)
                      +.....+.+..+
T Consensus       304 ~~~~~~~~l~~l  315 (323)
T d1fcha_         304 YGAADARDLSTL  315 (323)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHHhCHHHH
Confidence            766666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.2e-22  Score=199.52  Aligned_cols=283  Identities=18%  Similarity=0.148  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (727)
Q Consensus       395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (727)
                      .+..|..+...|++++|+..|++++.      ..|..+.+|..+|.++...|++++|+.+|.+++++        .|...
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~------~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~   87 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQ------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQ   87 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccccc
Confidence            56789999999999999999999985      46777889999999999999999999999999998        78889


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA------SGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (727)
                      ..+..+|.+|...|++++|+..+++++.+..............      .........+...+.+.+|+..|.+++.+.+
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p  167 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  167 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999988743311000000000      1111223344566788999999999998765


Q ss_pred             hCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004848          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (727)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  628 (727)
                      ...     .+.++..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|+++++
T Consensus       168 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         168 TSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             TSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccc-----ccccchhhHHHHHHHHHHhhhhcccccccccc--------cccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            432     24678899999999999999999999998862        23467899999999999999999999999999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHHhCChhHHHH
Q 004848          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG---TANPDVDDEKRRLAELLKEAGRVRSRKA  705 (727)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g---~~~p~~~~~~~~La~~~~~~g~~~~A~~  705 (727)
                      +        +|....+++.+|.+|..+|++++|+.+|++++++.....+   ........++..++.++...|+.+.+. 
T Consensus       235 ~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~-  305 (323)
T d1fcha_         235 L--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-  305 (323)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-
T ss_pred             H--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH-
Confidence            8        8888999999999999999999999999999998643222   111122345677888999999988776 


Q ss_pred             HHHHHHHH
Q 004848          706 QSLETLLD  713 (727)
Q Consensus       706 ~~l~~al~  713 (727)
                      ....+.|.
T Consensus       306 ~~~~~~l~  313 (323)
T d1fcha_         306 AADARDLS  313 (323)
T ss_dssp             HHHTTCHH
T ss_pred             HHHHhCHH
Confidence            55444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.9e-18  Score=173.05  Aligned_cols=242  Identities=11%  Similarity=0.077  Sum_probs=205.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHhc
Q 004848          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYEK  506 (727)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  506 (727)
                      .|....++..+|.++...+.+++|+..+++++++        +|....+|..+|.++...|+ +++|+.++++++++   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            5778889999999999999999999999999999        89999999999999999875 89999999999999   


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (727)
                            .|....+|..+|.++..+|++++|+.++.+++++.+..       ..+|.++|.++...|++++|+.+|+++++
T Consensus       108 ------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-------~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         108 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             ------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                  55568899999999999999999999999999987766       57899999999999999999999999998


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004848          587 KLRAIGERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD  660 (727)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  660 (727)
                      +        .+....+|+++|.++...+.      +++|+.++.+++.+        +|....++..++.++...| ..+
T Consensus       175 ~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~~~  237 (315)
T d2h6fa1         175 E--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-LSK  237 (315)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-GGG
T ss_pred             H--------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-hHH
Confidence            7        23346789999999887776      68999999999999        8998899999999876544 688


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHhhh
Q 004848          661 AIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA--GRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       661 A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~--g~~~~A~~~~l~~al~~~p~  717 (727)
                      +...+++++++.      ..+....++..++.+|...  ++.+.+. ..+++++++.+.
T Consensus       238 ~~~~~~~~~~l~------~~~~~~~~~~~l~~~y~~~~~~~~~~~~-~~~~ka~~l~~~  289 (315)
T d2h6fa1         238 YPNLLNQLLDLQ------PSHSSPYLIAFLVDIYEDMLENQCDNKE-DILNKALELCEI  289 (315)
T ss_dssp             CHHHHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHTTCSSHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC------CCcCCHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHH
Confidence            889999888763      1233455666777777553  7777888 888888887655

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-17  Score=167.21  Aligned_cols=263  Identities=11%  Similarity=0.010  Sum_probs=217.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Q 004848          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNK  466 (727)
Q Consensus       388 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~  466 (727)
                      .+..+.++..+|.++...+.+++|+..+.+++.+      .|....+|+.+|.++...| ++++|+.++++++++     
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-----  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----
Confidence            3556788999999999999999999999999874      6778899999999999987 599999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004848          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (727)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (727)
                         +|....+|..+|.++..+|++++|+.++.+++++         .|....+|.++|.++...|++++|+.++++++++
T Consensus       108 ---~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~---------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         108 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ---HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh---------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence               8999999999999999999999999999999999         4556789999999999999999999999999999


Q ss_pred             HHhCCCCCccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHH
Q 004848          547 YNDAPGQQSTVAGIEAQMGVMYYMLGN------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV  620 (727)
Q Consensus       547 ~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  620 (727)
                      .+..       ..+|+++|.++...+.      +++|+.++.+++.+.        +....+|..++.++...| ..++.
T Consensus       176 ~p~n-------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--------P~~~~~~~~l~~ll~~~~-~~~~~  239 (315)
T d2h6fa1         176 DVRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRG-LSKYP  239 (315)
T ss_dssp             CTTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTC-GGGCH
T ss_pred             CCcc-------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--------CCchHHHHHHHHHHHhcC-hHHHH
Confidence            7665       5788999999988776      578999999988872        234578888888866544 68889


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004848          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK  695 (727)
Q Consensus       621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~  695 (727)
                      ..+++++++     .+ .+....++..++.+|..  .++.+.+...+.+++.+........+|.....|..++..+.
T Consensus       240 ~~~~~~~~l-----~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~  310 (315)
T d2h6fa1         240 NLLNQLLDL-----QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  310 (315)
T ss_dssp             HHHHHHHHH-----TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-----CC-CcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            999998887     11 22344566777887755  47778889999999888766544556666666666665544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.4e-16  Score=157.72  Aligned_cols=227  Identities=10%  Similarity=0.023  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004848          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (727)
Q Consensus       395 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (727)
                      |...|.+|...++|++|+..|.+++.+....++.+..+.++.++|.+|..+|++++|+.+|++++.++....  ......
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~  117 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--cchhHH
Confidence            444577888999999999999999999999888899999999999999999999999999999999988764  345667


Q ss_pred             HHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848          475 SVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       475 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      .++..+|.+|.. .|++++|+.+|++++.+....   ...+....++..+|.++..+|++++|+.+|++++...+.....
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~---~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc---CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            889999999865 699999999999999998763   3466678899999999999999999999999999987776555


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSI  629 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~  629 (727)
                      .......+..++.++...|++..|...+++++++.+......   ....+..+..++..  .+.+++|+..|.++.++
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr---e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            556667788899999999999999999999887644332211   12345556666554  34688888888766554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.5e-19  Score=182.21  Aligned_cols=266  Identities=8%  Similarity=-0.111  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004848          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG----------LICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (727)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (727)
                      .++|+.++++++.+.|...        .+|+..+          ..+...|++++|+.++++++..      +|....++
T Consensus        45 ~~~al~~~~~~l~~~P~~~--------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------~pk~~~~~  110 (334)
T d1dcea1          45 DESVLELTSQILGANPDFA--------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NPKSYGTW  110 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh------CCCcHHHH
Confidence            4666666666666655442        2233333          3344556688899999988753      56667788


Q ss_pred             HHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          436 CSIGDTYLSLSR--YDEAGFAYQKALTAFKTNKGENHPAVASV-FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       436 ~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      ..+|.++...++  +++|+..+++++..        +|....+ +..+|.++...+.+++|+.++++++.+         
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~---------  173 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---------  173 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---------
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhh--------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc---------
Confidence            899988888764  89999999999998        5665555 457788999999999999999999888         


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      +|....++..+|.++..+|++++|+..+.+++.+.+..           ......+...+..++|...+.+++....   
T Consensus       174 ~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~a~~~~~~~l~~~~---  239 (334)
T d1dcea1         174 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----------LELVQNAFFTDPNDQSAWFYHRWLLGRA---  239 (334)
T ss_dssp             TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----------HHHHHHHHHHCSSCSHHHHHHHHHHSCC---
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----------HHHHHHHHHhcchhHHHHHHHHHHHhCc---
Confidence            45557889999999999999999999999888887654           2334456677888899999988876411   


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                           .....+..+|.++...+++.+|+..+.+++..        +|....++..+|.+|...|++++|+.+|++++++ 
T Consensus       240 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l-  305 (334)
T d1dcea1         240 -----EPLFRCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV-  305 (334)
T ss_dssp             -----CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH-
T ss_pred             -----chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence                 12235567788888999999999999999988        9999999999999999999999999999999998 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          673 EEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       673 ~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                             +|.....|..|+..+...
T Consensus       306 -------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         306 -------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             -------CGGGHHHHHHHHHHHHHH
T ss_pred             -------CcccHHHHHHHHHHHhHh
Confidence                   798888888888877753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.4e-17  Score=157.10  Aligned_cols=225  Identities=13%  Similarity=0.040  Sum_probs=163.1

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004848          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR  486 (727)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  486 (727)
                      +.+.|+..+.+++.  .....++..+.+++.+|.+|...|++++|+..|++++.+        +|..+.++..+|.+|..
T Consensus        14 ~~e~al~~~~e~l~--~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          14 QQEVILARMEQILA--SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHH
Confidence            44556666655532  111235677889999999999999999999999999998        78889999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 004848          487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (727)
Q Consensus       487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (727)
                      +|++++|+..|++++.+         .|....++..+|.+|..+|++++|+..|++++++.+..       ......++.
T Consensus        84 ~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~  147 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLEL---------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------PFRSLWLYL  147 (259)
T ss_dssp             TTCHHHHHHHHHHHHHH---------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHH---------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-------HHHHHHHHH
Confidence            99999999999999999         34456789999999999999999999999999886543       234455666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004848          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (727)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  646 (727)
                      ++...+....+..+......    . .............++. ....+.++.+...+..+...        .|....+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  213 (259)
T d1xnfa_         148 AEQKLDEKQAKEVLKQHFEK----S-DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNF  213 (259)
T ss_dssp             HHHHHCHHHHHHHHHHHHHH----S-CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhhc----c-chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHHH
Confidence            66666665544444333222    1 2222211112111111 11223355555556665555        567778999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          647 NLAGTYDAIGRLDDAIEILEFVVGI  671 (727)
Q Consensus       647 ~la~~~~~~g~~~~A~~~~~~al~~  671 (727)
                      .||.+|..+|++++|+.+|++++..
T Consensus       214 ~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         214 YLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999964

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=8.9e-18  Score=170.51  Aligned_cols=277  Identities=9%  Similarity=-0.067  Sum_probs=220.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHHhc
Q 004848          314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA----------LQFSEAQKFCQMALDIHKDN  383 (727)
Q Consensus       314 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~  383 (727)
                      +.......+..++|+.++++++++        +|+...+|...+.++...          |++.+|+.++++++...|+.
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~  106 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS  106 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhcccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            333333344458999999999998        788888887776665544          45889999999999987766


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          384 GSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (727)
Q Consensus       384 ~~~~~~~~a~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (727)
                      .        .++..+|.++...+  ++++|+..+.+++..     +.......+..+|.++...+.+++|+.++++++.+
T Consensus       107 ~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         107 Y--------GTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             H--------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             H--------HHHHHhhHHHHHhccccHHHHHHHHHHHHhh-----CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc
Confidence            3        56888888887776  489999999999864     22233334567889999999999999999999988


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 004848          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (727)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (727)
                              +|....+|..+|.++..+|++++|+..+.+++.+...         ..    .+...+...+..++|...+.
T Consensus       174 --------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~----~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK---------EL----ELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH---------HH----HHHHHHHHHCSSCSHHHHHH
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH---------HH----HHHHHHHHhcchhHHHHHHH
Confidence                    8899999999999999999999999999888888422         22    23344556677888999999


Q ss_pred             HHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 004848          542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE  621 (727)
Q Consensus       542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  621 (727)
                      +++...+....       .+..++.++...|++.+|+..+.+++..        .+....++..+|.++...|++++|+.
T Consensus       233 ~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~  297 (334)
T d1dcea1         233 RWLLGRAEPLF-------RCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQ  297 (334)
T ss_dssp             HHHHSCCCCSS-------SCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred             HHHHhCcchhh-------HHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHH
Confidence            98876554422       3345678888889999999999888764        45577899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (727)
                      +|++++++        +|.....|..|+..+...
T Consensus       298 ~~~~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         298 YFSTLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------CcccHHHHHHHHHHHhHh
Confidence            99999999        999998999998887753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=4.4e-16  Score=154.04  Aligned_cols=226  Identities=14%  Similarity=0.105  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (727)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (727)
                      |...|.+|...++|++|+.+|.+++++..+..  +.+..+.++.++|.+|..+|++++|+.+|++++.++...   ....
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~---~~~~  114 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR---GQFR  114 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc---ccch
Confidence            34457889999999999999999999988765  356778999999999999999999999999999998874   3456


Q ss_pred             hHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004848          515 EIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (727)
Q Consensus       515 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (727)
                      ....++..+|.+|.. .|++++|+.+|++++.+.+.. +.......++..+|.+|..+|+|++|+.+|++++........
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            667889999999865 699999999999999998876 556667788999999999999999999999999886544322


Q ss_pred             CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004848          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVG  670 (727)
Q Consensus       594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  670 (727)
                      . .......+..++.++...|++..|...+++++++.....   +......+..|..++..  .+.+++|+..|.++.+
T Consensus       194 ~-~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         194 S-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             T-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             h-hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            2 233456778899999999999999999999988722211   11122345566666554  3468888888876553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.1e-16  Score=153.80  Aligned_cols=224  Identities=13%  Similarity=0.023  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHH
Q 004848          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (727)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  317 (727)
                      .+.|+..+.+++...     ...++..+.+++.+|.+|...|++++|+..|++++.+.     ++++.    +|+.+|.+
T Consensus        15 ~e~al~~~~e~l~~~-----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-----p~~~~----a~~~lg~~   80 (259)
T d1xnfa_          15 QEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMPE----VFNYLGIY   80 (259)
T ss_dssp             HHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHH----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CCCHH----HHhhhchH
Confidence            445555555554321     12346778899999999999999999999999999986     55543    59999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004848          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (727)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (727)
                      |..+|++++|+..|++++++        +|....++..+|.++...|++++|+..|++++++.|...        .....
T Consensus        81 ~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~  144 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--------FRSLW  144 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------HHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH--------HHHHH
Confidence            99999999999999999999        788889999999999999999999999999999876432        33555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004848          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (727)
Q Consensus       398 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (727)
                      ++.++...+..+.+.........   .....+........++. ....+.+..+...+......        .+....++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  212 (259)
T d1xnfa_         145 LYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETN  212 (259)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHH
Confidence            66666666665555444333221   12222222111111111 11122344444444444444        56777899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004848          478 VRLADMYNRTGKLRESKSYCENALRI  503 (727)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~  503 (727)
                      +.+|.+|...|++++|+.+|++++..
T Consensus       213 ~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         213 FYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999876

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=151.72  Aligned_cols=231  Identities=13%  Similarity=0.074  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004848          410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK  489 (727)
Q Consensus       410 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  489 (727)
                      +|+++|++|+.+      .|..+.++.++|.++..+|++.+|   |++++..        +|..+..+...+.++.  ..
T Consensus         4 eA~q~~~qA~~l------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~--~~   64 (497)
T d1ya0a1           4 QSAQYLRQAEVL------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWN--HA   64 (497)
T ss_dssp             HHHHHHHHHHHH------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHH--HH
T ss_pred             HHHHHHHHHHHc------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHH--HH
Confidence            688999999875      455566778899999999999876   8888877        6776666544443332  22


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 004848          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (727)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (727)
                      |..++..+++..+....    ....  ......++.++...+.|+.|+..+.+++.+.+..       ...+.++|..+.
T Consensus        65 y~~~ie~~r~~~k~~~~----~~~~--~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~-------~~~~~~lg~~~~  131 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRAN----PNRS--EVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC-------RVKSSQLGIISN  131 (497)
T ss_dssp             THHHHHHHHHHHSCSSC----TTTT--HHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred             HHHHHHHHHHhcccccC----ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh-------HHHHHHhHHHHH
Confidence            55566666655533111    1111  1122234555556666777777666666554333       467788999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004848          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (727)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  649 (727)
                      ..|++++|...+.+++...          ...++..+|.++..+|++++|+.+|++|+.+        +|+...++++||
T Consensus       132 ~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg  193 (497)
T d1ya0a1         132 KQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLA  193 (497)
T ss_dssp             -----------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHH
Confidence            9999999999999988753          2368889999999999999999999999999        899999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                      .++...|++.+|+.+|.+++.+        .|....++.+|+.++.+..
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999965        4556677777777776544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-14  Score=152.67  Aligned_cols=282  Identities=11%  Similarity=-0.001  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004848          325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET  404 (727)
Q Consensus       325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~  404 (727)
                      -+|+++|++|+++        .|+.+.++..+|.++...+++.+|   |++++...+...        ..+...+.++  
T Consensus         3 ~eA~q~~~qA~~l--------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a--------~~~~~e~~Lw--   61 (497)
T d1ya0a1           3 LQSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYA--------LDKKVEQDLW--   61 (497)
T ss_dssp             HHHHHHHHHHHHH--------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHH--------HHHTHHHHHH--
T ss_pred             HHHHHHHHHHHHc--------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhH--------HHHhHHHHHH--
Confidence            3789999999999        588899999999999999999876   888887765432        2222222221  


Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (727)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (727)
                      ...|..+++.+++....   .............++.++...+.|+.|+..+.+++.+        .|.....+..+|.++
T Consensus        62 ~~~y~~~ie~~r~~~k~---~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~  130 (497)
T d1ya0a1          62 NHAFKNQITTLQGQAKN---RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIIS  130 (497)
T ss_dssp             HHHTHHHHHHHHHHHSC---SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred             HHHHHHHHHHHHHhccc---ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHHH
Confidence            12245566666554321   1111111111223455556667777777777776665        677888999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004848          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (727)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (727)
                      ...|++++|+..+.+++...         +  ..++..+|.++...|++++|+.+|++|+.+.|+.       ..+++++
T Consensus       131 ~~~~~~~~A~~~~~~al~~~---------~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-------~~~~~~L  192 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSYI---------C--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-------GQPYNQL  192 (497)
T ss_dssp             ------------CCHHHHHH---------H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-------SHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCC---------H--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------hHHHHHH
Confidence            99999999999999998772         2  3578899999999999999999999999998877       4789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004848          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (727)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  644 (727)
                      |.++...|++.+|+.+|.+++.+       .++ ...++.+|+.++....+..++..            .....+.....
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~-------~~~-~~~a~~nL~~~~~~~~~~~~~~~------------~~~~~~~~~~~  252 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAV-------KFP-FPAASTNLQKALSKALESRDEVK------------TKWGVSDFIKA  252 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSS-------SBC-CHHHHHHHHHHHHHHTTSCCCCC------------SSCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhC-------CCC-CHHHHHHHHHHHHHhhhhhhhhc------------cccccchHHHH
Confidence            99999999999999999999875       122 46788888887765432211100            00012233334


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004848          645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      +..+..++.....++....+.++.+......+
T Consensus       253 f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  284 (497)
T d1ya0a1         253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELL  284 (497)
T ss_dssp             HHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            45555566666677766666666665555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8e-13  Score=120.79  Aligned_cols=137  Identities=14%  Similarity=0.063  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004848          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (727)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  640 (727)
                      +++.|..+...|+|++|+..|.++       .+.    .+.+++++|.+|..+|++++|+.+|++|+++        +|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i-------~~~----~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV-------QDP----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS-------SSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc-------CCC----CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            456799999999999999988753       222    2468899999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-------hcC-CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          641 TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE-------KLG-TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       641 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~g-~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                      ...+++++|.+|..+|++++|+..|++++.....       .++ ........+++++|.++...|++++|. +.|+.++
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~-~~l~~A~  147 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLALAT  147 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH-HHHHHHH
Confidence            9999999999999999999999999999975321       011 112344678999999999999999999 9999999


Q ss_pred             HHhhh
Q 004848          713 DANSR  717 (727)
Q Consensus       713 ~~~p~  717 (727)
                      .+.|+
T Consensus       148 ~~~~~  152 (192)
T d1hh8a_         148 SMKSE  152 (192)
T ss_dssp             TTCCS
T ss_pred             hcCCC
Confidence            88776

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.4e-12  Score=111.10  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (727)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (727)
                      ..+...|..|+..|+|++|+.+|++++.+        .+....+|.++|.++...|++++|+..|++++++        +
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------~   74 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   74 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------c
Confidence            44567899999999999999999999997        2335789999999999999999999999999999        8


Q ss_pred             ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--HHhCChhHHH
Q 004848          639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL--KEAGRVRSRK  704 (727)
Q Consensus       639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~--~~~g~~~~A~  704 (727)
                      |....++..+|.++..+|++++|+..|++++.+        +|....++..++.+.  ...+.+++|+
T Consensus        75 p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_          75 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987        566666777776664  3445566666

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.9e-12  Score=112.42  Aligned_cols=140  Identities=16%  Similarity=0.195  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-------AFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                      +..+...|..++..|+|++|+.+|++++.+.........       .....++.++|.+|..+|++++|+.++++++.+ 
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence            456678899999999999999999999998654433222       223467888999999999999999999999999 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                             +|....+++.+|.+|..+|++++|+..|++++++        +|++..+...++.+....+...+...+.|.+
T Consensus        92 -------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~  156 (170)
T d1p5qa1          92 -------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKKLYAN  156 (170)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   8999999999999999999999999999999987        6777888888999988777766654234444


Q ss_pred             HHH
Q 004848          711 LLD  713 (727)
Q Consensus       711 al~  713 (727)
                      .++
T Consensus       157 ~f~  159 (170)
T d1p5qa1         157 MFE  159 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-12  Score=116.86  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (727)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (727)
                      ..++..|..+...|+|+.|+..|.++      .   +..+.+++++|.+|..+|++++|+.+|++++++        +|.
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i------~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV------Q---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS------S---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc------C---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            44567799999999999999999753      1   123468899999999999999999999999998        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC-------CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004848          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP-------GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (727)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (727)
                      .+.+|.++|.+|..+|++++|+..|++++...+....       .........+++++|.++..+|++++|+..+.+++.
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999986433110       011223467889999999999999999999999987


Q ss_pred             HHH
Q 004848          546 IYN  548 (727)
Q Consensus       546 ~~~  548 (727)
                      +.+
T Consensus       149 ~~~  151 (192)
T d1hh8a_         149 MKS  151 (192)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6e-12  Score=104.46  Aligned_cols=111  Identities=18%  Similarity=0.150  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  639 (727)
                      -+...|..++..|++++|+.+|.+++.+        .+....+|..+|.++..+|++++|+..|.+++++        +|
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p   68 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP   68 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------cc
Confidence            3567899999999999999999999986        2335689999999999999999999999999999        89


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004848          640 DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL  694 (727)
Q Consensus       640 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~  694 (727)
                      ....+|+++|.++..+|++++|+..|++++++        .|....++..++.+.
T Consensus        69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999976        577777777777664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.6e-12  Score=105.84  Aligned_cols=98  Identities=24%  Similarity=0.302  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004848          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD  682 (727)
Q Consensus       603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~  682 (727)
                      +...|..++..|++++|+.+|.++++.        +|....++.++|.+|..+|++++|+..|.+++.+        +|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence            456799999999999999999999999        8999999999999999999999999999999988        688


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ...+++++|.++..+|++++|+ ..|+++++++|+
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~-~~~~~a~~~~p~  103 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEAN  103 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence            8999999999999999999999 999999999997

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.32  E-value=2.7e-11  Score=107.90  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  630 (727)
                      +..+...|..++..|+|.+|+.+|.+++.++.......       ......++.++|.||..+|++++|+.++++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            35567789999999999999999999998764432221       1224567889999999999999999999999999 


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004848          631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET  710 (727)
Q Consensus       631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  710 (727)
                             +|....+++.+|.+|..+|++++|+..|++++.+        +|++..++..++.+....+...+...+.|.+
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   8999999999999999999999999999999986        6778888888998888777666544366666


Q ss_pred             HHHHh
Q 004848          711 LLDAN  715 (727)
Q Consensus       711 al~~~  715 (727)
                      +++--
T Consensus       159 ~f~~~  163 (168)
T d1kt1a1         159 MFKKF  163 (168)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            65543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.4e-11  Score=104.94  Aligned_cols=133  Identities=15%  Similarity=0.040  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004848          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (727)
Q Consensus       391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (727)
                      .+..+...|..++..|+|++|+.+|.+++.+      .|....+|.++|.+|..+|++++|+..|++++++        +
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------~   74 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   74 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------c
Confidence            4556788999999999999999999999875      5677889999999999999999999999999999        8


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHH
Q 004848          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI--YESMNELEQAIKLLQKALKI  546 (727)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~  546 (727)
                      |....++..+|.++..+|++++|+..|++++.+.         |....++..++.+  ....+.+++|+........+
T Consensus        75 p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~  143 (159)
T d1a17a_          75 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK---------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  143 (159)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHh
Confidence            9999999999999999999999999999999992         2223444455544  34445566776654444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=5.5e-12  Score=116.60  Aligned_cols=101  Identities=14%  Similarity=0.071  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      +..+...|..++..|+|++|+.+|++|+.+        +|....+|.++|.+|...|++++|+.+|++|+.+        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            356778899999999999999999999999        8999999999999999999999999999999976        


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      +|....+++++|.+|..+|++++|+ ..|+++++++|+
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~-~~~~~al~l~p~  104 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE  104 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCcc
Confidence            7899999999999999999999999 999999999997

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.28  E-value=2.4e-11  Score=106.21  Aligned_cols=125  Identities=13%  Similarity=0.081  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch--------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA--------FFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  629 (727)
                      +..+...|..++..|+|.+|+..|.+++.++.........        ....++.++|.+|..+|++++|+.++++++++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            3455678999999999999999999999876544333222        12457889999999999999999999999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG  698 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g  698 (727)
                              +|....+|+.+|.+|..+|++++|+..|++++++        +|.+..+...+..+..+.+
T Consensus        97 --------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          97 --------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             --------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHH
T ss_pred             --------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence                    8999999999999999999999999999999998        6777788888887766553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.27  E-value=5.3e-10  Score=107.95  Aligned_cols=222  Identities=18%  Similarity=0.205  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Q 004848          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQ  340 (727)
Q Consensus       265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  340 (727)
                      +.+++.||..++..+++++|+.+|+++.+..       +    ..+++.||.+|..    ..++..|..+++.+...   
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-------~----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK-------E----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc---
Confidence            4568899999999999999999999997652       1    2358889999998    67899999999997765   


Q ss_pred             HhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHH
Q 004848          341 VLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAAL  412 (727)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~~~~A~  412 (727)
                             ....+...+|.++..    ..+.+.|..+++++.....          ..+...++..+..    ......+.
T Consensus        68 -------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~----------~~a~~~l~~~~~~~~~~~~~~~~a~  130 (265)
T d1ouva_          68 -------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY----------AEGCASLGGIYHDGKVVTRDFKKAV  130 (265)
T ss_dssp             -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             -------cccchhhccccccccccccchhhHHHHHHHhhhhhhhh----------hhHHHhhcccccCCCcccchhHHHH
Confidence                   345667778877765    4688999999998876432          1345667766664    44677777


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--
Q 004848          413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR--  486 (727)
Q Consensus       413 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--  486 (727)
                      ..+.+...        ......+..+|.+|..    ..+...+..+++.+.+.          ....+++.+|.+|..  
T Consensus       131 ~~~~~~~~--------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g~  192 (265)
T d1ouva_         131 EYFTKACD--------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGE  192 (265)
T ss_dssp             HHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTC
T ss_pred             HHhhhhhc--------ccccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccCc
Confidence            77766542        2334567888999886    45677777777777653          346788999999987  


Q ss_pred             --cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHH
Q 004848          487 --TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKI  546 (727)
Q Consensus       487 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  546 (727)
                        ..++++|+.+|+++.+.      +     ...+++.||.+|..    ..++++|+.+|++|...
T Consensus       193 ~~~~d~~~A~~~~~~aa~~------g-----~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         193 GATKNFKEALARYSKACEL------E-----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHT------T-----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             ccccchhhhhhhHhhhhcc------c-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence              67899999999999776      2     25578899999986    44899999999999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.26  E-value=2.3e-10  Score=100.31  Aligned_cols=139  Identities=15%  Similarity=0.146  Sum_probs=109.4

Q ss_pred             HHHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004848          516 IASGLTDV--SSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (727)
Q Consensus       516 ~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (727)
                      ++.++..+  |..++..|+|++|+..|++++++.+..+....     ..+.++.++|.+|..+|++++|+..+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            34455555  78888999999999999999999988754332     346789999999999999999999999999998


Q ss_pred             HHhCCCCc---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004848          589 RAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (727)
Q Consensus       589 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  655 (727)
                      ++......   +....+++++|.+|..+|++++|+..|++|+++..+..+. .+........++..+..+
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHHc
Confidence            87655432   3345688999999999999999999999999998876653 344444555555544443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.26  E-value=1.3e-09  Score=105.02  Aligned_cols=225  Identities=13%  Similarity=0.161  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhcC
Q 004848          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKP  507 (727)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  507 (727)
                      +.+++.+|..++..+++.+|+.+|+++.+.          ....+++.||.+|..    ..++..|..+++.+....   
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---
Confidence            357889999999999999999999999764          245788999999987    678999999999877651   


Q ss_pred             CCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCHHHHHH
Q 004848          508 VPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYD  579 (727)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~  579 (727)
                              ...+...+|.++..    ..+.+.|..+++.+...     +.    ......++..+..    ......|..
T Consensus        69 --------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-----g~----~~a~~~l~~~~~~~~~~~~~~~~a~~  131 (265)
T d1ouva_          69 --------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KY----AEGCASLGGIYHDGKVVTRDFKKAVE  131 (265)
T ss_dssp             --------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             --------ccchhhccccccccccccchhhHHHHHHHhhhhhh-----hh----hhHHHhhcccccCCCcccchhHHHHH
Confidence                    23456677777765    46788999999988753     11    2345566766665    345666766


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-
Q 004848          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-  654 (727)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-  654 (727)
                      .+.+....          .....+..+|.++..    ..+...+..+++.+.+.          ....++++||.+|.. 
T Consensus       132 ~~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g  191 (265)
T d1ouva_         132 YFTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHG  191 (265)
T ss_dssp             HHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHT
T ss_pred             Hhhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccC
Confidence            66665442          124677889998886    45677888888887753          345688999999987 


Q ss_pred             ---cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHhhh
Q 004848          655 ---IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       655 ---~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~  717 (727)
                         ..++++|+.+|+++.+.          ..+.+++.||.+|..    ..++++|. ++|++|......
T Consensus       192 ~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~LG~~y~~G~g~~~n~~~A~-~~~~kAa~~g~~  250 (265)
T d1ouva_         192 EGATKNFKEALARYSKACEL----------ENGGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAK  250 (265)
T ss_dssp             CSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCH
T ss_pred             cccccchhhhhhhHhhhhcc----------cCHHHHHHHHHHHHcCCCCccCHHHHH-HHHHHHHHCcCH
Confidence               67999999999999863          235688999999985    44899999 999999988654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-10  Score=103.12  Aligned_cols=129  Identities=11%  Similarity=0.044  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ---------DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (727)
Q Consensus       391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (727)
                      .+..+...|..++..|+|++|+..|.+++........         ......++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            3566788999999999999999999999987654332         1234567888999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHH
Q 004848          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (727)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (727)
                              +|....+++.+|.+|..+|++++|+..|++++.+         .|....+...++.+....+...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    8989999999999999999999999999999999         233355677777777666655544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.3e-10  Score=115.05  Aligned_cols=225  Identities=13%  Similarity=0.031  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHhcCCCCCChH
Q 004848          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT--------------GKLRESKSYCENALRIYEKPVPGVPPE  514 (727)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (727)
                      +.+...|++|+..        .|....+|...+..+...              +..++|...|++++..+        .+
T Consensus        33 ~Rv~~vyerAl~~--------~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~--------~p   96 (308)
T d2onda1          33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK   96 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred             HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc--------CC
Confidence            4566678888877        355556666666554322              23466677777776542        22


Q ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004848          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (727)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (727)
                      .....+..++.++...|+++.|...|++++...+..      ...++..++.+....|+++.|..+|++++...    + 
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~------~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~----~-  165 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----R-  165 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST----T-
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----C-
Confidence            335678888999999999999999999998753322      23467788899999999999999999987642    1 


Q ss_pred             CchhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004848          595 KSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE  673 (727)
Q Consensus       595 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  673 (727)
                         .....+...|.... ..|+.+.|..+|++++..        .|+....+..++..+...|+++.|..+|++++... 
T Consensus       166 ---~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-  233 (308)
T d2onda1         166 ---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-  233 (308)
T ss_dssp             ---CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-
T ss_pred             ---CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-
Confidence               12345666666544 468999999999999998        67778899999999999999999999999998742 


Q ss_pred             HhcCCCChh-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          674 EKLGTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       674 ~~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                          +.+|. ....+..........|+.+.+. ..++++.+..|.
T Consensus       234 ----~~~~~~~~~iw~~~~~fE~~~G~~~~~~-~~~~r~~~~~~~  273 (308)
T d2onda1         234 ----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFRE  273 (308)
T ss_dssp             ----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTT
T ss_pred             ----CCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcc
Confidence                23443 3456777778888889999999 999999999987

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.25  E-value=2.2e-11  Score=100.01  Aligned_cols=94  Identities=19%  Similarity=0.129  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      ..+.+|.++...|++++|+.+|++++..        +|+...++..+|.++...|++++|+.+|++++++        +|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   81 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   81 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------cc
Confidence            4567899999999999999999999999        8999999999999999999999999999999998        78


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLL  712 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al  712 (727)
                      ....++..||.+|..+|++++|+ +.|+++|
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~-~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAAL-ASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHH-HHHHHHh
Confidence            99999999999999999999999 9999876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.2e-11  Score=109.85  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004848          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (727)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (727)
                      ..+...|..++..|+|++|+.+|++++.+        .|..+.+|.++|.+|...|++++|+.+|++++.+         
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l---------   67 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---------   67 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh---------
Confidence            45678899999999999999999999999        7899999999999999999999999999999988         


Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      .|....+|..+|.+|..+|++++|+..|++++.+.+......
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence            455678899999999999999999999999999998764433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.24  E-value=1.4e-10  Score=101.67  Aligned_cols=139  Identities=13%  Similarity=0.094  Sum_probs=107.6

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004848          432 ASVDCSI--GDTYLSLSRYDEAGFAYQKALTAFKTNKGEN----HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (727)
Q Consensus       432 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (727)
                      +.++..+  |..++..|+|++|+..|++++++........    .+..+.+|.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3444444  7888899999999999999999876653211    233567899999999999999999999999999976


Q ss_pred             cCCC--CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004848          506 KPVP--GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (727)
Q Consensus       506 ~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (727)
                      +...  ....+....+++++|.+|..+|++++|+..|++++++.+...+...........++..+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHH
Confidence            5421  2224456678999999999999999999999999999998877665555555555544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.23  E-value=7.8e-11  Score=105.06  Aligned_cols=129  Identities=12%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004848          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE--------RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (727)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  631 (727)
                      .+...|..++..|+|.+|+..|.+++.+......        ...+....++.++|.++..+|++++|+..|.+++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            3456788999999999999999999987543211        112345678899999999999999999999999998  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004848          632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK  704 (727)
Q Consensus       632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~  704 (727)
                            +|....+|+.+|.+|..+|++++|+..|++++++        +|.+..++..|+.++.......++.
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                  8999999999999999999999999999999998        5777788888888887766555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.22  E-value=1.4e-10  Score=103.12  Aligned_cols=144  Identities=13%  Similarity=0.172  Sum_probs=113.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKP------SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (727)
                      ..+..+...|..++..|+ |.+|+.+|.+|+.+++.......      .+....++.++|.||..+|+|++|+.++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~-~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGK-YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            356788999999999997 99999999999998754322111      13355678889999999999999999999999


Q ss_pred             ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHH-HHH
Q 004848          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSE-AQK  371 (727)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~  371 (727)
                      .+.     +.+.    .+++.+|.+|..+|++++|+..|.+++.+        +|....+...++.+....+.+.+ ..+
T Consensus        92 ~l~-----p~~~----~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          92 GLD-----SANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             HHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc-----cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            885     3333    45999999999999999999999999998        78888888888888777665543 445


Q ss_pred             HHHHHHHHH
Q 004848          372 FCQMALDIH  380 (727)
Q Consensus       372 ~~~~al~~~  380 (727)
                      .|.+.++..
T Consensus       155 ~~~~~f~~~  163 (168)
T d1kt1a1         155 TYANMFKKF  163 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.2e-11  Score=98.90  Aligned_cols=108  Identities=12%  Similarity=0.235  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      +..+..+|..++..|+|++|+.+|.+++++        +|....++.++|.+|..+|++++|+..+++++.+..... ..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence            456778999999999999999999999999        888899999999999999999999999999999865543 23


Q ss_pred             ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ++....++..+|.++...+++++|+ .+|++++..++.
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~  111 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHhcCCC
Confidence            4556788999999999999999999 999999988765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.8e-10  Score=111.65  Aligned_cols=227  Identities=9%  Similarity=0.033  Sum_probs=168.9

Q ss_pred             hHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHH-------HhC-------CHHHHHHHHHHHHHHHHHHhCCCCc
Q 004848          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA-------MLG-------QLENSLMCYTTGLEVQKQVLGETDP  347 (727)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~g-------~~~~A~~~~~~al~~~~~~~~~~~~  347 (727)
                      +.+...|++|+...     +.++.    +|+..+..+.       ..|       ..++|...|+++++.       ..|
T Consensus        33 ~Rv~~vyerAl~~~-----~~~~~----lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-------~~p   96 (308)
T d2onda1          33 KRVMFAYEQCLLVL-----GHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLK   96 (308)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTT
T ss_pred             HHHHHHHHHHHHHC-----CCCHH----HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-------cCC
Confidence            44666788887764     33332    2444443322       223       345666666666643       146


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004848          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (727)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (727)
                      .....+..++.++...|+++.|...|++++...+...       ..++..++......|+++.|...|.+++.      .
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-------~~~w~~~~~~~~~~~~~~~ar~i~~~al~------~  163 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARE------D  163 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHT------S
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH------h
Confidence            6677889999999999999999999999997654332       24578888999999999999999999864      2


Q ss_pred             ChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004848          428 DAEVASVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       428 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (727)
                      .+.....+...|... ...|+.+.|...|++++..        .|.....+...+..+...|+++.|..+|++++.....
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            333345566667654 4468999999999999987        5777889999999999999999999999999987421


Q ss_pred             CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004848          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (727)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (727)
                           ++.....++..........|+.+.+..+++++.++++..
T Consensus       236 -----~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         236 -----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             -----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             -----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence                 233345567777777788899999999999999988765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-10  Score=98.36  Aligned_cols=105  Identities=13%  Similarity=0.216  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004848          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      +..+..+|..++..|+|++|+.+|++++.+         .|....++.++|.+|..+|++++|+..+++++.+.+.....
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH
Confidence            456678999999999999999999999999         34457789999999999999999999999999999998777


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (727)
                      ...++.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7788889999999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=1.7e-10  Score=102.81  Aligned_cols=132  Identities=12%  Similarity=0.118  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANG-------KPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  292 (727)
                      .+..+...|..++..|+ |.+|+..|.+|+.+.+.....       .-.|..+.++.++|.+|..+|+|++|+..|++++
T Consensus        26 ~a~~~~~~~~~~~~~~~-y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            34566788999999997 999999999999876543211       1136678889999999999999999999999999


Q ss_pred             ccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHH
Q 004848          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (727)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (727)
                      ++.     +.++    .+|+.+|.+|..+|++++|+..|++++++        +|....+...++.+........++
T Consensus       105 ~~~-----p~~~----~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         105 EID-----PSNT----KALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh-----hhhh----hHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            986     4444    35999999999999999999999999999        788888888888887666555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.17  E-value=2.6e-10  Score=99.48  Aligned_cols=123  Identities=15%  Similarity=0.022  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC----------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004848          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (727)
Q Consensus       391 ~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (727)
                      .+..+...|..++..|+|.+|+..|.+++.........          +....++.++|.+|..+|++++|+.++++++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            34567788999999999999999999998765543322          12345788999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc
Q 004848          461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (727)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (727)
                      +        +|....+|+.+|.+|..+|++++|+.+|++++++         .|....+...+..+..++
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l---------~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------NPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHH
Confidence            8        8999999999999999999999999999999999         333455566666665544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.16  E-value=1.4e-10  Score=95.08  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      ..+.+|.++...|++++|+..|++++..        .|....+|..+|.++...|++++|+.+|++++++         .
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------~   80 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D   80 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc---------c
Confidence            3577899999999999999999999998        8889999999999999999999999999999999         5


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (727)
                      |....++..+|.+|..+|++++|++.+++.+
T Consensus        81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5567899999999999999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=96.21  Aligned_cols=98  Identities=11%  Similarity=-0.010  Sum_probs=84.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHhcCCCCh
Q 004848          605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEKLGTANP  681 (727)
Q Consensus       605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~p  681 (727)
                      .++..+...+++++|.+.|++++.+        +|....+++++|.++...+   ++++|+.+|++++..      ...|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            4667788889999999999999999        8999999999999998755   455688888888753      1234


Q ss_pred             hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ....+++.||.+|...|++++|+ .+|+++++++|+
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~-~~~~~aL~~~P~  104 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKAL-KYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHhCcC
Confidence            55679999999999999999999 999999999997

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.5e-10  Score=94.63  Aligned_cols=111  Identities=11%  Similarity=0.041  Sum_probs=91.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCC-
Q 004848          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYH-  638 (727)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-  638 (727)
                      .++..+...+++++|.+.|++++.+        .+....+++++|.++...+   ++++|+.+|++++..        + 
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--------~~   67 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--------GS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--------SC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc--------cC
Confidence            5677888999999999999999997        2335689999999998744   556799999998875        4 


Q ss_pred             -ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004848          639 -PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       639 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~  697 (727)
                       |....++++||.+|..+|++++|+.+|++++++        +|++..+...++.+..+.
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHH
Confidence             344568999999999999999999999999998        688888888777776554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.6e-09  Score=83.32  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004848          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA  679 (727)
Q Consensus       600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~  679 (727)
                      +.-++.+|.++.+.|+|.+|+.+|++|+++....... .+....++.+||.+|..+|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            3456789999999999999999999999987654333 5667889999999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHh
Q 004848          680 NPDVDDEKRRLAELLKEA  697 (727)
Q Consensus       680 ~p~~~~~~~~La~~~~~~  697 (727)
                      +|+...++.+++.+...+
T Consensus        76 ~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHh
Confidence            688888999988776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=1.3e-09  Score=93.75  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=91.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHhcCC
Q 004848          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAVELFEEARSILEQECGP  636 (727)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  636 (727)
                      .|.+++.|++|+..|++++++        .|..+.++.++|.++...          +.+++|+..|++|+++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            356677899999999999997        344578999999998854          4568899999999999       


Q ss_pred             CCccHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHH
Q 004848          637 YHPDTLGVYSNLAGTYDAIGR-----------LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR  703 (727)
Q Consensus       637 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A  703 (727)
                       +|+...+++++|.+|..+|+           +++|+.+|++++++        +|.+..++..|+.+....+.+.++
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999988764           68888888888887        688888888888876555444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.1e-09  Score=81.54  Aligned_cols=89  Identities=16%  Similarity=0.106  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004848          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (727)
                      +.-++.+|.+++..|+|.+|+.+|++|+++.+...... ...+.++.++|.++...|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~-~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST-IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC-ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            34567999999999999999999999999887654433 346789999999999999999999999999999        


Q ss_pred             CccHHHHHHHHHHHHHHc
Q 004848          638 HPDTLGVYSNLAGTYDAI  655 (727)
Q Consensus       638 ~~~~~~~~~~la~~~~~~  655 (727)
                      +|+...++.+++.+...+
T Consensus        76 ~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHh
Confidence            899889999998766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=3e-09  Score=91.38  Aligned_cols=92  Identities=12%  Similarity=0.098  Sum_probs=81.4

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHHhcCC
Q 004848          609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI----------GRLDDAIEILEFVVGIREEKLGT  678 (727)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~g~  678 (727)
                      .+.+.+.|++|+..|++++++        +|..+.+++++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            355667899999999999999        999999999999999754          4568899999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCC-----------hhHHHHHHHHHHHHHhhh
Q 004848          679 ANPDVDDEKRRLAELLKEAGR-----------VRSRKAQSLETLLDANSR  717 (727)
Q Consensus       679 ~~p~~~~~~~~La~~~~~~g~-----------~~~A~~~~l~~al~~~p~  717 (727)
                       +|+...+++++|.+|..+|+           +++|. ++|+++++++|+
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~-~~~~kal~l~P~  118 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT-QFFQQAVDEQPD  118 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh-hhhhcccccCCC
Confidence             79999999999999988764           68899 999999999997

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=5e-07  Score=79.97  Aligned_cols=132  Identities=15%  Similarity=0.035  Sum_probs=101.8

Q ss_pred             hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004848          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (727)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (727)
                      +......+...|......|++++|+..|.+|+.+++..+-....              .+.+  +.   .....+     
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~--------------~~~w--~~---~~r~~l-----   62 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR--------------DFQF--VE---PFATAL-----   62 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT--------------TSTT--HH---HHHHHH-----
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc--------------chHH--HH---HHHHHH-----
Confidence            34456778889999999999999999999999887543211100              0111  00   111111     


Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004848          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  672 (727)
                         ......++..++.++...|++++|+.++++++.+        +|....+|..++.+|...|++.+|+..|+++....
T Consensus        63 ---~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          63 ---VEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence               0124568888999999999999999999999999        99999999999999999999999999999999988


Q ss_pred             HHhcCCC
Q 004848          673 EEKLGTA  679 (727)
Q Consensus       673 ~~~~g~~  679 (727)
                      .+-+|-.
T Consensus       132 ~~eLG~~  138 (179)
T d2ff4a2         132 ADDLGID  138 (179)
T ss_dssp             HHHHSCC
T ss_pred             HHHhCCC
Confidence            7777743

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=1.1e-06  Score=77.74  Aligned_cols=114  Identities=11%  Similarity=-0.018  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccc-------------hHHHHHHHHHHHHHHHHhCCHHHHH
Q 004848          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-------------ALAKFAGHMQLGDTYAMLGQLENSL  328 (727)
Q Consensus       262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~  328 (727)
                      ......+...|......|++++|+..|.+|+.+.+...-.+.             ....+.++..++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            456777888999999999999999999999998643221111             0223467889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 004848          329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (727)
Q Consensus       329 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (727)
                      .++++++.+        +|....+|..++.++...|++.+|+..|+++.......
T Consensus        88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999        89999999999999999999999999999998876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.47  E-value=1.3e-07  Score=89.48  Aligned_cols=128  Identities=10%  Similarity=-0.070  Sum_probs=106.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004848          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY  645 (727)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  645 (727)
                      .-.+..|++++|+..|+++++.        .+....++..+|.++...|++++|+..|++++++        +|+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~   67 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA   67 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence            3456789999999999999986        3445789999999999999999999999999999        89999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004848          646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  717 (727)
Q Consensus       646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~  717 (727)
                      ..++.++...+..+++...+.+..       -..+|.....+...+.++...|++++|. ..++++.++.|.
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~-~~~~~a~e~~p~  131 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCCC
Confidence            999998877666655544333222       1345777788888999999999999999 999999999987

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.20  E-value=2.1e-06  Score=80.94  Aligned_cols=127  Identities=11%  Similarity=0.070  Sum_probs=99.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHH
Q 004848          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (727)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (727)
                      .-.+..|++++|+..|+++++.        +|....++..++.+|+..|++++|+..|++++++         .|.....
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---------~P~~~~~   66 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---------FPEYLPG   66 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CGGGHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCcHHH
Confidence            3456789999999999999998        8999999999999999999999999999999999         5556777


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004848          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (727)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (727)
                      +..++.++...+..+++...+...     ...+ .+.....+...+.++...|++++|...+.++.+...
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~-----~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATA-----KVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCE-----ECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhh-----hccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            888888877666665543322211     1112 223345566788999999999999999999988643

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.81  E-value=4.7e-05  Score=63.30  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=84.2

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHH
Q 004848          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (727)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  316 (727)
                      |+++|+.+|++|.+.      +.     ..++..|+.  ....++++|+.+|+++.+..       +    ..+++.||.
T Consensus         8 d~~~A~~~~~kaa~~------g~-----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-------~----~~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL------NE-----MFGCLSLVS--NSQINKQKLFQYLSKACELN-------S----GNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT------TC-----TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-------C----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC------CC-----hhhhhhhcc--ccccCHHHHHHHHhhhhccc-------c----hhhhhhHHH
Confidence            488999999998763      21     233455553  34578999999999998652       2    234788999


Q ss_pred             HHHH----hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHH
Q 004848          317 TYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIH  380 (727)
Q Consensus       317 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  380 (727)
                      +|..    ..++.+|+.+|+++.+.          ..+.+++.||.+|..    ..++.+|+.+|+++.+..
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            9886    56799999999999876          346788999999987    468999999999987753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00011  Score=61.04  Aligned_cols=110  Identities=10%  Similarity=0.054  Sum_probs=85.0

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004848          573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (727)
Q Consensus       573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  652 (727)
                      |+++|+.+|+++.+.    +.      ..+...|+.  ....++++|+.+|+++.+.          ....+++.||.+|
T Consensus         8 d~~~A~~~~~kaa~~----g~------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~y   65 (133)
T d1klxa_           8 DLKKAIQYYVKACEL----NE------MFGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHT----TC------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC----CC------hhhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHhh
Confidence            688999999998763    11      134445553  3456899999999998764          3345889999999


Q ss_pred             HH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHh
Q 004848          653 DA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDAN  715 (727)
Q Consensus       653 ~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~  715 (727)
                      ..    ..++++|+.+|+++.+.          ..+.+.+.||.+|..    ..+.++|. .+|+++.+..
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~-~~~~~Aa~~G  125 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAV-KTFEKACRLG  125 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHHTT
T ss_pred             hhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHH-HHHHHHHHCC
Confidence            86    56789999999999863          345688999999987    56899999 9999998764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=0.00039  Score=55.10  Aligned_cols=78  Identities=5%  Similarity=-0.061  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004848          600 GVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK  675 (727)
Q Consensus       600 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  675 (727)
                      ..+.++.|+++.+..   +.++|+.+|++++..        +|.. .++++.||..|.++|+|++|..++++++++    
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----
Confidence            467788888888654   457899999888876        6654 579999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHH
Q 004848          676 LGTANPDVDDEKRRLAEL  693 (727)
Q Consensus       676 ~g~~~p~~~~~~~~La~~  693 (727)
                          .|++..+....-.+
T Consensus       103 ----eP~n~qA~~L~~~I  116 (124)
T d2pqrb1         103 ----ERNNKQVGALKSMV  116 (124)
T ss_dssp             ----CTTCHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHH
Confidence                57766665444333

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0032  Score=49.71  Aligned_cols=79  Identities=5%  Similarity=-0.111  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004848          558 AGIEAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (727)
Q Consensus       558 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (727)
                      ..+.++.|+++.+..+   .++|+.++++++..       .+.....+++.||..|.++|+|++|+.++++++++     
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i-----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----
Confidence            4677888888887654   45777777776653       23345689999999999999999999999999999     


Q ss_pred             CCCCccHHHHHHHHHHH
Q 004848          635 GPYHPDTLGVYSNLAGT  651 (727)
Q Consensus       635 ~~~~~~~~~~~~~la~~  651 (727)
                         .|+...+....-.+
T Consensus       103 ---eP~n~qA~~L~~~I  116 (124)
T d2pqrb1         103 ---ERNNKQVGALKSMV  116 (124)
T ss_dssp             ---CTTCHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHH
Confidence               88877665544443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.85  Score=45.23  Aligned_cols=199  Identities=12%  Similarity=-0.065  Sum_probs=115.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHH
Q 004848          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (727)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (727)
                      +.......+.+.|...+........     ............++..+...+..+.|..++......     ....  ...
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~~  288 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQQ-----LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-----SQST--SLI  288 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-----CCCH--HHH
T ss_pred             HHHHHhccChhHHHHHHHhhhhccc-----ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-----ccch--HHH
Confidence            3333444577777777776554421     123334444444555555556667776666544322     1111  112


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------HHH
Q 004848          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI--------LEQ  632 (727)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~  632 (727)
                      ...++ .....+++..+...+...-        ..+.......+.+|..+...|+.++|..+|..+...        ...
T Consensus       289 ~w~~~-~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~  359 (450)
T d1qsaa1         289 ERRVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQR  359 (450)
T ss_dssp             HHHHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred             HHHHH-HHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHH
Confidence            22233 3455678887776665431        122334567788899999999999999888887541        111


Q ss_pred             hcCC---------CCcc---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCCh
Q 004848          633 ECGP---------YHPD---TLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRV  700 (727)
Q Consensus       633 ~~~~---------~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~  700 (727)
                      +..+         ..+.   ....-...+..+...|+...|...+..++..       .+   ..-...++.+..+.|.+
T Consensus       360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-------~~---~~~~~~la~lA~~~g~~  429 (450)
T d1qsaa1         360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-------KS---KTEQAQLARYAFNNQWW  429 (450)
T ss_dssp             TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CC---HHHHHHHHHHHHHTTCH
T ss_pred             cCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-------CC---HHHHHHHHHHHHHCCCh
Confidence            1111         0000   1112345577788999999999988876631       12   33556779999999999


Q ss_pred             hHHHHHHHHHH
Q 004848          701 RSRKAQSLETL  711 (727)
Q Consensus       701 ~~A~~~~l~~a  711 (727)
                      +.|+ ....++
T Consensus       430 ~~aI-~a~~~~  439 (450)
T d1qsaa1         430 DLSV-QATIAG  439 (450)
T ss_dssp             HHHH-HHHHHT
T ss_pred             hHHH-HHHHHH
Confidence            9999 655544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=1.5  Score=43.23  Aligned_cols=128  Identities=12%  Similarity=0.028  Sum_probs=75.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 004848          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (727)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  643 (727)
                      .+.......+.+.|...+......    ..............++......+..+.|..++......        ..+...
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~  287 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------SQSTSL  287 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------CCCHHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhc----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--------ccchHH
Confidence            344444456777777777665432    11222223333344444444556677777777665443        222222


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004848          644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  713 (727)
Q Consensus       644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~  713 (727)
                      ....++ .....+++..+...+...-        ..........+.+|..+...|+.++|. ..|..+..
T Consensus       288 ~~w~~~-~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~-~~~~~~a~  347 (450)
T d1qsaa1         288 IERRVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAK-EILHQLMQ  347 (450)
T ss_dssp             HHHHHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred             HHHHHH-HHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHH-HHHHHHhc
Confidence            223333 3455688888877765432        233444677899999999999999998 88887653

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.12  E-value=0.9  Score=39.38  Aligned_cols=188  Identities=10%  Similarity=0.049  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      ....+|.+..+.|+|++...+.++++.+.....+.-+.    .-.+.+..+|- ..|....+...+....   ....+..
T Consensus         6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~----eERnLLsvayKn~i~~~R~s~R~i~~ie---~k~~~~~   78 (220)
T d2o8pa1           6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD----EERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNND   78 (220)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSCH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCH----HHHHHHHHHHHHHHhhhHHHHHHHHHHH---Hhhccch
Confidence            45567999999999999999999999885310000011    11222333332 1244444444443321   1211111


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHH
Q 004848          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-----QRYSINEAVELFEEARSI  629 (727)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~  629 (727)
                       ..    ..+..-|. ..=..+-...+...+.+........+......+-..|..|.     ..|..++|...|++|..+
T Consensus        79 -~~----~~~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i  152 (220)
T d2o8pa1          79 -EL----VKICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL  152 (220)
T ss_dssp             -HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             -hH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence             11    11111111 11122334455556666555544433222233333444443     467889999999999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhc
Q 004848          630 LEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREEKL  676 (727)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~  676 (727)
                      ......|.||-......+.+.+|. -+++.++|.++.+.|.+.+...+
T Consensus       153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai  200 (220)
T d2o8pa1         153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQI  200 (220)
T ss_dssp             HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            988888889988888888887765 47999999999999866555444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.11  E-value=1.4  Score=41.39  Aligned_cols=262  Identities=12%  Similarity=0.094  Sum_probs=135.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004848          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (727)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (727)
                      -..|..+...|.|+.|..+|...-.                +..+..++...++++.|.+++.++        ..   ..
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d----------------~~rl~~~~v~l~~~~~avd~~~k~--------~~---~~   70 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN----------------FGRLASTLVHLGEYQAAVDGARKA--------NS---TR   70 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC----------------HHHHHHHHHTTTCHHHHHHHHHHH--------TC---HH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC----------------HHHHHHHHHhhccHHHHHHHHHHc--------CC---HH
Confidence            3467777788888888888764211                455667778899999998887655        12   23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004848          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (727)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (727)
                      +|..+...+.......-|...     ..    ....++.   -...+...|...|.+++.+.+++.++..-      ..+
T Consensus        71 ~~k~~~~~l~~~~e~~la~i~-----~~----~~~~~~d---~l~~~v~~ye~~~~~e~Li~~Le~~~~~~------~~~  132 (336)
T d1b89a_          71 TWKEVCFACVDGKEFRLAQMC-----GL----HIVVHAD---ELEELINYYQDRGYFEELITMLEAALGLE------RAH  132 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHT-----TT----TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTST------TCC
T ss_pred             HHHHHHHHHHhCcHHHHHHHH-----HH----HhhcCHH---HHHHHHHHHHHcCChHHHHHHHHHHHcCC------ccc
Confidence            555666666666655443111     10    0001232   33456677888999999999999876541      112


Q ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHH---------HHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004848          514 EEIASGLTDVSSIYESMNELEQAIKLLQK---------ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (727)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (727)
                         ...+..++.+|.+.+. ++-++++..         ++..+...        ..|..+..+|.+.|+++.|+...-.-
T Consensus       133 ---~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~i~~  200 (336)
T d1b89a_         133 ---MGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITMMNH  200 (336)
T ss_dssp             ---HHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ---hHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHc--------CChHHHHHHHHhcCCHHHHHHHHHHc
Confidence               3456778887776543 333333332         23333222        12345677888888888887665431


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH----------HHHHHHHHHH
Q 004848          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV----------YSNLAGTYDA  654 (727)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----------~~~la~~~~~  654 (727)
                      ..      +      ++-....-.++.+..+.+...+...-.++.        +|....-          ...+.....+
T Consensus       201 ~~------~------~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--------~p~~i~~lL~~v~~~~d~~r~V~~~~k  260 (336)
T d1b89a_         201 PT------D------AWKEGQFKDIITKVANVELYYRAIQFYLEF--------KPLLLNDLLMVLSPRLDHTRAVNYFSK  260 (336)
T ss_dssp             TT------T------TCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--------CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             ch------h------hhhHHHHHHHHHccCChHHHHHHHHHHHHc--------CHHHHHHHHHHhccCCCHHHHHHHHHh
Confidence            10      0      000011112233333333222222222221        3332211          1223445566


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhH
Q 004848          655 IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRS  702 (727)
Q Consensus       655 ~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~  702 (727)
                      .++..-...+++....       .+   .......|+.+|...++++.
T Consensus       261 ~~~l~li~p~Le~v~~-------~n---~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         261 VKQLPLVKPYLRSVQN-------HN---NKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             TTCTTTTHHHHHHHHT-------TC---CHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCcHHHHHHHHHHHH-------cC---hHHHHHHHHHHHhCcchhHH
Confidence            7777777777766542       12   23578889999999999654

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=92.85  E-value=2.6  Score=36.34  Aligned_cols=186  Identities=13%  Similarity=0.059  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004848          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDA  429 (727)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  429 (727)
                      .....+|.+..+.|+|++...+.++++.+.......-..   .-.+.+..+|- ..|....+...+....   .......
T Consensus         5 ~~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~---eERnLLsvayKn~i~~~R~s~R~i~~ie---~k~~~~~   78 (220)
T d2o8pa1           5 LLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNND   78 (220)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSCH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCH---HHHHHHHHHHHHHHhhhHHHHHHHHHHH---Hhhccch
Confidence            345678899999999999999999999986532211111   11333443332 1233334443332211   1111122


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHH
Q 004848          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-----RTGKLRESKSYCENALRIY  504 (727)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~  504 (727)
                      ....    +..-|. ..--.+-...+...+.+......++....+..+-..|..|.     ..|.-++|...|++|..+.
T Consensus        79 ~~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia  153 (220)
T d2o8pa1          79 ELVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL  153 (220)
T ss_dssp             HHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             hHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            1111    111111 11123344556666666666554322223333334455553     4678899999999999998


Q ss_pred             hcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      ...++..++-....+++.-...|.-+++.++|.++.+.|.+.+
T Consensus       154 ~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~f  196 (220)
T d2o8pa1         154 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  196 (220)
T ss_dssp             HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            7655443444445555555556667899999999988885443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.11  E-value=3.5  Score=36.05  Aligned_cols=185  Identities=14%  Similarity=0.104  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhCCCC
Q 004848          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYNDAPGQ  553 (727)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~  553 (727)
                      .-+..+|.+..+.++|++.+.+.+++++.....  .- .   ..-.+.+..+|- ..|....+...+....+..... +.
T Consensus         5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~--~L-s---~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~-~~   77 (236)
T d1o9da_           5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSE--EL-T---VEERNLLSVAYKNVIGARRASWRIISSIEQKEESR-GN   77 (236)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSS--CC-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC--CC-C---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcc-CC
Confidence            446778899999999999999999998763110  00 1   111223333332 2244445555554433322221 21


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C-CCCchhHHHHHHHHHHHHHH-----hC-----CHHHHH
Q 004848          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI--G-ERKSAFFGVALNQMGLACVQ-----RY-----SINEAV  620 (727)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~~~la~~~~~-----~g-----~~~~A~  620 (727)
                      ....     .+..-|. ..=-++=..++...+.+....  . ...+......+...|..|.-     .|     -.+.|.
T Consensus        78 ~~~~-----~~i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~  151 (236)
T d1o9da_          78 EEHV-----NSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  151 (236)
T ss_dssp             HHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             hHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence            1111     0111111 011122233444444444322  0 11112222233334444432     12     256789


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004848          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR  672 (727)
Q Consensus       621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  672 (727)
                      ..|++|..+......+.||-......+.+..|.. .|+.++|..+.++++.-.
T Consensus       152 ~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         152 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999888888899988888888887765 599999999988887644

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.87  E-value=0.54  Score=32.73  Aligned_cols=50  Identities=16%  Similarity=0.178  Sum_probs=39.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004848          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (727)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  269 (727)
                      +.+..+-..|..+...|. |++||+++++|...+.......+++....++.
T Consensus         6 N~AH~~~RrAer~l~~~r-ydeAIech~kA~~yl~eA~klt~s~~~l~SLq   55 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTESEQAHLSLE   55 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            346677889999999998 99999999999999988877666655444433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.34  E-value=5.6  Score=36.94  Aligned_cols=172  Identities=13%  Similarity=0.094  Sum_probs=96.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCch
Q 004848          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (727)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (727)
                      ...|..+...|.|+.|..+|...-.                 +-.+..++...+++..|..++.++             .
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d-----------------~~rl~~~~v~l~~~~~avd~~~k~-------------~   67 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN-----------------FGRLASTLVHLGEYQAAVDGARKA-------------N   67 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC-----------------HHHHHHHHHTTTCHHHHHHHHHHH-------------T
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC-----------------HHHHHHHHHhhccHHHHHHHHHHc-------------C
Confidence            3468889999999999999986433                 445678888999999988877653             2


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004848          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (727)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (727)
                      ...+|..+...+.....+.-|..+ ...+.        ..   +.-+..+...|...|.+++.+.+++.++.      ..
T Consensus        68 ~~~~~k~~~~~l~~~~e~~la~i~-~~~~~--------~~---~d~l~~~v~~ye~~~~~e~Li~~Le~~~~------~~  129 (336)
T d1b89a_          68 STRTWKEVCFACVDGKEFRLAQMC-GLHIV--------VH---ADELEELINYYQDRGYFEELITMLEAALG------LE  129 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHT-TTTTT--------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------ST
T ss_pred             CHHHHHHHHHHHHhCcHHHHHHHH-HHHhh--------cC---HHHHHHHHHHHHHcCChHHHHHHHHHHHc------CC
Confidence            335667777777766665443211 00000        11   12234566777888999999999887642      12


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004848          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQK---------ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE  498 (727)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  498 (727)
                      ......+..++.+|.+.+ .++-+++++.         ++..+.+         ...|-.+..+|.+.|++++|+..+-
T Consensus       130 ~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~---------~~l~~elv~Ly~~~~~~~~A~~~~i  198 (336)
T d1b89a_         130 RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQ---------AHLWAELVFLYDKYEEYDNAIITMM  198 (336)
T ss_dssp             TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHT---------TTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHH---------cCChHHHHHHHHhcCCHHHHHHHHH
Confidence            223345667777776643 3444444332         1222111         1123456777888888888876553

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.20  E-value=5.3  Score=34.68  Aligned_cols=182  Identities=13%  Similarity=0.110  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhCCCCC
Q 004848          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYNDAPGQQ  554 (727)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  554 (727)
                      -+..+|.+..+.++|++.+.+.++++......     .   ..-.+.+..+|- ..|....+...+....+   ...+..
T Consensus         5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eL-----t---~eERnLlsvayKn~i~~rR~s~R~l~~ie~---k~~~~~   73 (230)
T d2o02a1           5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAEL-----S---NEERNLLSVAYKNVVGARRSSWRVVSSIEQ---KTEGAE   73 (230)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-----
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCC-----C---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHcCcc
Confidence            35678899999999999999999988763221     1   111222333332 23444445444443221   111111


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHHHHHh----------CCHHHHHH
Q 004848          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI---GERKSAFFGVALNQMGLACVQR----------YSINEAVE  621 (727)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~  621 (727)
                      .....     ..-|. ..=-.+=...+...+.+....   ....+......+...|..|.-.          .-.+.|..
T Consensus        74 ~~~~~-----i~~yk-~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~  147 (230)
T d2o02a1          74 KKQQM-----AREYR-EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQ  147 (230)
T ss_dssp             -CHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             hhhHH-----HHHHH-HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHH
Confidence            11111     11111 111122233444444444322   0111222223333445544321          12457999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHH
Q 004848          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIREE  674 (727)
Q Consensus       622 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~  674 (727)
                      .|++|++++.....|.||-......+.+..|. -+|+.++|....++++.-.-.
T Consensus       148 aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         148 AYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999988888889988888787777665 589999999999999876543

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.55  E-value=7  Score=33.85  Aligned_cols=179  Identities=13%  Similarity=0.025  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004848          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASL  389 (727)
Q Consensus       311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (727)
                      +..+|.+....++|++.+.+..++++...       .....-...+..+|- ..|....+.+.+.........  .....
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~-------eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~--~~~~~   76 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGA-------ELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEG--AEKKQ   76 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcC--cchhh
Confidence            56789999999999999999999887621       111222223333332 223344444444332211111  11111


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhCCCChhHHHHHHHHHHHHHHcC----------CHHHHHHH
Q 004848          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTM-----IANDQDAEVASVDCSIGDTYLSLS----------RYDEAGFA  454 (727)
Q Consensus       390 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~  454 (727)
                      ....       -|. ..=-.+-...+...+.++     .........+..+-..|..|...-          -.+.|...
T Consensus        77 ~~i~-------~yk-~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~a  148 (230)
T d2o02a1          77 QMAR-------EYR-EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQA  148 (230)
T ss_dssp             HHHH-------HHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHH-------HHH-HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            1000       000 000111122222222222     222223333344444565554321          23479999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhc
Q 004848          455 YQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEK  506 (727)
Q Consensus       455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  506 (727)
                      |++|+++......+.+|.......+.+..|+. .|+.++|..+.++++...-.
T Consensus       149 Y~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         149 YQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999887777788877777777776665 89999999999988876543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.55  E-value=0.99  Score=33.06  Aligned_cols=55  Identities=20%  Similarity=0.069  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004848          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (727)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~  275 (727)
                      .+..++..|..+-..|+ |++|+.+|.+|+.++-......+++..-..+.....-|
T Consensus        14 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eY   68 (93)
T d1wfda_          14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            45677899999999997 99999999999999988776666666555555444444

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=85.31  E-value=11  Score=32.71  Aligned_cols=185  Identities=15%  Similarity=0.120  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCC
Q 004848          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIAND  426 (727)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~  426 (727)
                      -.-+..+|.+..+.++|++...+.++++...  +...    .   .-.+.+..+|-. .|....+...+..........+
T Consensus         4 Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls----~---eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~   76 (236)
T d1o9da_           4 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRG   76 (236)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCC----H---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccC
Confidence            3456788888999999999999999998762  2211    1   113334443321 2333444444432221111111


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHHHc-----CC-----hHHH
Q 004848          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRT-----GK-----LRES  493 (727)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~-----g~-----~~~A  493 (727)
                       .......    ..-| ...=-++=...+..++.+.....-+  .++ ..+..+-..|..|.-.     |+     .+.|
T Consensus        77 -~~~~~~~----i~~y-k~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a  150 (236)
T d1o9da_          77 -NEEHVNS----IREY-RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST  150 (236)
T ss_dssp             -CHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             -ChHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHH
Confidence             1111111    1111 0111122233455555554332211  122 2233334445555432     22     4578


Q ss_pred             HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004848          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (727)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (727)
                      ...|+.|+.+....++..++-....+++.-...|...|+.++|..+.++++...
T Consensus       151 ~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         151 LTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            899999999887655444444444444444445556799999998888877643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.93  E-value=1.9  Score=29.88  Aligned_cols=39  Identities=10%  Similarity=0.028  Sum_probs=32.7

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004848          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (727)
Q Consensus       597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (727)
                      -..+..+...|.-+...|+|++|++++++|...+.....
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k   43 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            345667778899999999999999999999988776554