Citrus Sinensis ID: 004863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720------
Protein Sequence
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKKLTARKEEKKKISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDET
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHEEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHEEEEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHcHHHHHHHHccccccccccccccccccHHHHcccccccccccccccccccccccccHHHcccccccHHHHHHHHccccccccccccccccHccccccccccccccccHcccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccEEEEEEEEEccccccccccccccccccccccccHHccccHHHcccccccccccccccccEEccccccccccccccccccccccEEEEEcccccc
Coil and Loop (DISEMBL)
MGSSKREIELEEQLKDAgnlllnppspvdEVINLLDKVEHLLANveqapsrsmrDALLptmkglitndllrrsdMDVRLSVTSCISEitritapdspyddELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRkenqdvsptswklGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACIcgsddenpqhghligsenqlatkepdppclgevvhdvdgisksvtsngtaasrnedsVVKDKLSNVLERCSQVErsqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissgrkiakvpgrrksddkgvdcspslnqdskKEALNLTdkmladptsaslksglpdgshhrrgrtkkqgstvnqnadhnslSVSLSTRVeetasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtKKRRRSLVVAISAqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgKEEKKMISKARAkssdrdgshsketpksevkkhsvgkEKKKVISKAIAKssnknhleetptTEIKKKLTARKEEKKKISKAGAksldgncsaetpktgvkrkltagkemdseapalNEQLVGsrikvwwpmdet
Flexible Loop (DISEMBL)
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLAnveqapsrsmrdalLPTMKGlitndllrrsdMDVRLSVtsciseitritapdspYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASvrkenqdvsptswklgeKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKsvtsngtaasrnedsvvkDKLSNVLERCsqversqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissGRKIAKvpgrrksddkgvdcspslnqdskKEALNLTDKMLADPTSaslksglpdgshhrrgrtkkqgstvnqnadhnslsvslstRVEEtasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtkkrrrSLVVAisaqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgkeekkmiskarakssdrdgshsketpksevkkhsvgkekkKVISKAiakssnknhleetptteikkkltarkeekkkiskagaksldgncsaetpktgvkrkltagkemdseapalneqlvgsrikvwwpmdet
Low Complexity Region (SEG)
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEAsggkkkktskgavksPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPksevkkhsvgkekkkviskaiakssnknHLEETPTTEIkkkltarkeekkkISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDET
Disordered region (IsUnstruct)
***************************VDEVINLLDKVEHLLANV**********ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGS***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LVGSRIKVWW*****
Disordered Region (DISOPRED)
****************************DEVINLLDKVEHLLA**************LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK**********KLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDEN***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RIKVWWPMDET
Disordered Region (DISEMBL)
**********EEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSV*************VVKDKLSNVLERC*******************************************NSLMNPEEGYDHSWISSGR********************SLNQDSKKEALNLTDKMLADPTS****************************ADHNSLS*************************************************************DKEKPLQLSVTKKRRRSLVVAISAQNI******************PNIDENYSEDTPK*********************************************************AKSSNKNHLEETPTTEIKK*****************KSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDET
Disordered Region (DISPRO)
******EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHG****SENQ**TKEP*PPCLGEVVHDV*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************KKVISKAIAKS**************************************************************APALNEQLVGSRIKVWWPMD**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSKREIELEEQLKDAGNLLLNPPSPxxxxxxxxxxxxxxxxxxxxxPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKKLTARKEEKKKISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	726	2.2.26 [Sep-21-2011]
Q5F3V3	1330	Sister chromatid cohesion	yes	no	0.265	0.145	0.263	6e-13
Q9HFF5	1205	Sister chromatid cohesion	yes	no	0.205	0.123	0.286	7e-13
Q04264	1277	Sister chromatid cohesion	yes	no	0.236	0.134	0.269	8e-13
Q6A026	1332	Sister chromatid cohesion	yes	no	0.265	0.144	0.269	1e-12
Q29RF7	1337	Sister chromatid cohesion	yes	no	0.265	0.144	0.269	1e-12
A4L9P7	1333	Sister chromatid cohesion	yes	no	0.265	0.144	0.269	1e-12
A1L1F4	1320	Sister chromatid cohesion	yes	no	0.276	0.152	0.245	2e-12
Q5U241	1464	Sister chromatid cohesion	N/A	no	0.243	0.120	0.241	2e-12
Q4KLU7	1323	Sister chromatid cohesion	N/A	no	0.269	0.148	0.246	5e-12
Q4QXM3	1323	Sister chromatid cohesion	N/A	no	0.269	0.148	0.246	1e-11

>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 33  DEVVKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 91

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 92  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 151

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 152 EDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 211

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  ++ L  KV  K
Sbjct: 212 KNLNKQAFDLA-KVLLK 227

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.
Gallus gallus (taxid: 9031)

>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 54  RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA 113
           RD++LP  + L+ N+LL   D  +R     CI E+ R+ APD+P+    +++ FQ+ +  
Sbjct: 44  RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKI 103

Query: 114 FENLSHASGRYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFV 172
              L +    YY +   IL++++ V+S +L++DL   ++ +V +F+ F  + R      V
Sbjct: 104 LSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNV 163

Query: 173 FAAMETIMTLVIDESEDVSWDLLRILLASV 202
              M  I+  +I+E   +    L IL A +
Sbjct: 164 EFYMLDIINQLINEINTIPAAALNILFAQL 193

Required for the establishment and maintenance of sister chromatid cohesion during S phase. Prevents their formation until eso1 is present. May also have a role during meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q04264|PDS5_YEAST Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 6/178 (3%)

Query: 63  GLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASG 122
            L++  LL+  D+ +R     C+S+I R+ APD+PY D  + + F+L +S FE L     
Sbjct: 58  ALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQEN 117

Query: 123 RYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
            Y+++   ++  + + RS +L+ DL   + L++E+F  F    +S  P  +F  +  I+ 
Sbjct: 118 GYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYDPNKS-FPARLFNVIGGILG 176

Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239
            VI E + V  ++LR++       N +  P     G  V + C  ++   L +   +R
Sbjct: 177 EVISEFDSVPLEVLRLIFNKFLTYNPNEIPE----GLNVTSDCGYEVSLILCDTYSNR 230

Essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase. Also required for chromosomal condensation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=3 SV=3

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 38  DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 97  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 157 EDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  S+ L  KV  K
Sbjct: 217 KNLNKQSFDLA-KVLLK 232

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Mus musculus (taxid: 10090)

>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 39  DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 97

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 98  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 157

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 158 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 217

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  S+ L  KV  K
Sbjct: 218 KNLNKQSFDLA-KVLLK 233

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Homo sapiens (taxid: 9606)

>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 38  DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 97  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 157 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  S+ L  KV  K
Sbjct: 217 KNLNKQSFDLA-KVLLK 232

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Rattus norvegicus (taxid: 10116)

>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   L     L +   LR  + DVRL V  C+++I
Sbjct: 34  DEVVKRLKLVVKTYMDMDQD-SEEEKQQYLALALHLASEFFLRNPNKDVRLLVACCLADI 92

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +KE F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 93  FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 152

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 153 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDTILINLIPAH 212

Query: 207 QDVSPTSWKLGEKVFTKCAAKLKT 230
           ++++  ++ L   +  +    ++T
Sbjct: 213 KNLNKQAYDLARTLLKRTVQTIET 236

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Danio rerio (taxid: 7955)

>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 93/182 (51%), Gaps = 5/182 (2%)

Query: 64  LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
           L ++  L+  D DVRL V  C+++I RI AP++PY   + +K+ F       + L     
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
             + +   +L+ +A V+S  +  +LE C+++  ++++    VI + H   V   M  +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182

Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQS 238
            ++ E + VS +LL  +L ++   +++++  ++ L + +  + A  ++   TN    V  
Sbjct: 183 SIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLM 242

Query: 239 RG 240
            G
Sbjct: 243 LG 244

Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis.

Xenopus laevis (taxid: 8355)

>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-b PE=1 SV=1

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 101/199 (50%), Gaps = 3/199 (1%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   LP    L ++  LR  + DVRL V  C+++I
Sbjct: 31  DEVVKRLKMVVKTFMDMDQD-SEEEKQQYLPLALHLSSDFFLRNPNKDVRLLVACCLADI 89

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +KE F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 90  FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 149

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +  E + V+ + L  +L ++   +
Sbjct: 150 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAH 209

Query: 207 QDVSPTSWKLGEKVFTKCA 225
           ++++  ++ L + +  + A
Sbjct: 210 KNLNKQAFDLAKVLLKRTA 228

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Xenopus laevis (taxid: 8355)

>sp|Q4QXM3|PD5AA_XENLA Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-a PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 100/199 (50%), Gaps = 3/199 (1%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 31  DEVVKRLKMVVKTYMDMDQD-SEEEKQQYLPLALHLSSEFFLRNPNKDVRLLVACCLADI 89

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +KE F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 90  FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 149

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +  E + V+ + L  +L ++   +
Sbjct: 150 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAH 209

Query: 207 QDVSPTSWKLGEKVFTKCA 225
           ++++  ++ L + +  + A
Sbjct: 210 KNLNKQAFDLAKVLLKRTA 228

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	726
255572741	635	conserved hypothetical protein [Ricinus	0.790	0.903	0.486	1e-148
224072711	901	predicted protein [Populus trichocarpa]	0.776	0.625	0.476	1e-133
449436185	820	PREDICTED: uncharacterized protein LOC10	0.523	0.463	0.532	1e-108
224089356	1037	predicted protein [Populus trichocarpa]	0.535	0.375	0.473	4e-97
359476152	858	PREDICTED: uncharacterized protein LOC10	0.495	0.419	0.510	4e-96
296082067	899	unnamed protein product [Vitis vinifera]	0.495	0.400	0.474	3e-93
147766183	1327	hypothetical protein VITISV_002799 [Viti	0.758	0.415	0.395	1e-90
297743633	764	unnamed protein product [Vitis vinifera]	0.801	0.761	0.381	3e-90
357467897	835	Sister chromatid cohesion protein PDS5-l	0.506	0.440	0.473	6e-89
356515006	894	PREDICTED: uncharacterized protein LOC10	0.338	0.275	0.605	1e-86

>gi|255572741|ref|XP_002527303.1| conserved hypothetical protein [Ricinus communis] gi|223533303|gb|EEF35055.1| conserved hypothetical protein [Ricinus communis]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 301/619 (48%), Positives = 399/619 (64%), Gaps = 45/619 (7%)

Query: 7   EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT 66
           EIELE+QLK+AGN LLNPPS +DE++N+LDK+EHLL NVEQAPS+SM+DALLP+MK LI+
Sbjct: 5   EIELEQQLKEAGNRLLNPPSSIDELLNMLDKLEHLLINVEQAPSKSMQDALLPSMKALIS 64

Query: 67  NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM 126
           N LLR SD DV++SV SC+SE TRITAPD PY+D+ MKE F+L V+AFE LSH S R YM
Sbjct: 65  NALLRNSDPDVKVSVVSCLSEFTRITAPDPPYNDDHMKEIFELTVAAFEKLSHVSSRCYM 124

Query: 127 KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186
           KA+SILDTVA+VRSCL+MLDLE D+L++++FQHFLK+IRSNHPH VF AMETIMTL+I+E
Sbjct: 125 KAVSILDTVARVRSCLIMLDLELDELIIKIFQHFLKIIRSNHPHAVFLAMETIMTLIINE 184

Query: 187 SEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDY 246
           S+ +S  LL  LLASVRKENQ  SP +WKLGEKV    AAKLK  +KEA+   G A D+Y
Sbjct: 185 SDTISMGLLTALLASVRKENQSASPIAWKLGEKVIVNSAAKLKPYIKEALHCDGRAFDEY 244

Query: 247 AEIVACICGSDDENPQHGHLIGSENQLATKE---PDPPCLGEVVHDVDGISKSVTSNGTA 303
           A I+A IC  +     H H+ GS + L TKE   PD    GE++H VDGI +S TSNG A
Sbjct: 245 APIIASICQDESHTVVHDHVNGSRDHLVTKEGRPPDAASPGEILHFVDGIPESTTSNGNA 304

Query: 304 ASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRG 363
           ++R+ ++ + D  +  +E C  ++ S S +A+ +A  +       VK E E  + PRKRG
Sbjct: 305 SARDANNGINDNSTKSMEHCPLIQHSDSTEAQGNADIE-------VKLEMEQGTVPRKRG 357

Query: 364 RKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCS--PSLNQDSKKEALNLTDK 421
            KPNSLMNPEEGYDH WI + RK AKV   RK    G+D     ++ +    E + LT +
Sbjct: 358 WKPNSLMNPEEGYDHCWIPTCRKGAKVSRERKLPYMGIDLCLDSTVPKKHVTELVGLTPE 417

Query: 422 M--LADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSV--SLSTRVEETASGS 477
              +   ++ S    LPDG+H ++ R KK  S +NQ+AD +SL V   L+T   E A   
Sbjct: 418 TSGIIGASTPSPNQCLPDGTHRKKSRPKKNPSNMNQDADSSSLEVVKVLNTESREKAKAE 477

Query: 478 ADFSLRKKPEDRSDTEIKHRKRS-------KTNEEISQPPGYGVSEKEAVVPSADKEKPL 530
            + SLRK  E RS+ E+K  K+S       KT +  S P    +S+++  + +  +E+P+
Sbjct: 478 YEVSLRKPSERRSNIEVKLHKQSRKIGIAAKTAKWTSLPSANLLSDEKDDILNEPEERPV 537

Query: 531 QLSV---------------TKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDEN 575
             S                T  R+ SLV+ +S    +E S  KK K+S       + D N
Sbjct: 538 HQSTQIGVRNSQKGRSLVQTDARKISLVIGVSNVRAAEESRIKKSKSS-------DRDGN 590

Query: 576 YSEDTPKTEIKRKHTSGKE 594
           + E+ P  ++KRK T  KE
Sbjct: 591 HKEEIPNKKLKRKRTPRKE 609

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072711|ref|XP_002303844.1| predicted protein [Populus trichocarpa] gi|222841276|gb|EEE78823.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 313/657 (47%), Positives = 406/657 (61%), Gaps = 93/657 (14%)

Query: 7   EIELEEQLKDAGNLLLNPP---------------------SPVD---EVINLLDKVEHLL 42
           E ELEE+LK+AGN LLNPP                     +PV    E  + + K+E LL
Sbjct: 5   ETELEERLKEAGNSLLNPPSSVDDLLDSLDDGSAANELVVNPVPAGPETTDNIWKLERLL 64

Query: 43  ANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDEL 102
            NVEQAPSRSM+DALLP MK LI++ +LR  D DVR++V SC+SEITRITAPD+PY+D+L
Sbjct: 65  TNVEQAPSRSMQDALLPPMKALISSAILRHLDEDVRVAVASCMSEITRITAPDAPYNDDL 124

Query: 103 MKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLK 162
           MKE FQL V++FE LSH SG  Y KA+SIL+ VA+VRSCL+MLDLE D+L+++MFQ+FLK
Sbjct: 125 MKEIFQLTVASFEKLSHESGHCYTKAVSILENVARVRSCLMMLDLELDELILDMFQYFLK 184

Query: 163 VIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFT 222
            IRSNHP     AMETIMTLVIDESE++S +LL +LL SV+K+NQ  SP +WKLGE+V T
Sbjct: 185 FIRSNHPQIAILAMETIMTLVIDESEEISVELLTLLLVSVKKQNQSFSPIAWKLGERVIT 244

Query: 223 KCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSD------DENPQHGHLIGSENQLATK 276
            CAAK+K  LKEAVQS GI LD+YA IVA I   +      D N   G  +GS       
Sbjct: 245 NCAAKIKPYLKEAVQSTGIPLDEYAPIVASIFQDESHTLECDYNNHSGEPLGS------- 297

Query: 277 EPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKC 336
            P+  C  EV    D I KS+  NGTA+ RN  +V KD  S +LE CS  E S+S +A+ 
Sbjct: 298 SPNAACRKEVFEGKDVIPKSIARNGTASIRNAGTVKKDNASKMLEPCSHTEHSKSTNAQD 357

Query: 337 SAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKS 396
            A P+       V  E EP++ P KRG KPNSLMNPEEGYD  W S+GRK  K+  R K 
Sbjct: 358 KAEPE-------VMLEMEPKAVPSKRGWKPNSLMNPEEGYD-PWFSTGRKTTKL-LREKL 408

Query: 397 DDKGVDCSPSLNQDSKKEALNLTDKMLADPT-----------SASL--KSGLPDGSHHRR 443
            DKG D  PS   DSKK AL+L    +  PT           S+SL  +  +  GSH +R
Sbjct: 409 QDKGNDDLPSETPDSKKVALSLMHVKVTKPTRFTPKTVQISRSSSLTPQQDITAGSHFKR 468

Query: 444 GRTKKQGSTVNQNADHN----SLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKR 499
           GR KK+G++++++AD +    S   S+S +VEE A    D SLRK+ ++RSD+E K +KR
Sbjct: 469 GRPKKKGNSMSEDADPSPSLLSKRESMSAQVEEKAPEFDDASLRKQSKERSDSEAKKQKR 528

Query: 500 -------SKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSV---------------TKK 537
                  SKT ++IS   G  VS K++VV S  +EKP+   V               T  
Sbjct: 529 LRKNELGSKTPKKISLSSGRVVSSKKSVVLSEPEEKPVHQPVVIAVRRFNKHRTAVPTGT 588

Query: 538 RRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKE 594
           +++SL V  S +++ EA   KK       +KS ++D +Y E+TP+ ++KRK T  KE
Sbjct: 589 KKKSLDVN-SDEDVGEAFRDKK-------IKSLDMDGSYLEETPQPKLKRKRTPRKE 637

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436185|ref|XP_004135874.1| PREDICTED: uncharacterized protein LOC101213167 [Cucumis sativus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/398 (53%), Positives = 279/398 (70%), Gaps = 18/398 (4%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELEEQLK+ G+ LL PPS  D ++  LDK E LL NVEQ+P+RSMRD LLP MK LI++ 
Sbjct: 7   ELEEQLKEIGSELLKPPSSTDALLKGLDKAECLLTNVEQSPTRSMRDTLLPLMKALISDK 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LL+ S+ DV+++ T+CI+EITRITAPD+PYDD+ MK  FQL + AF  LS+ SGR YMKA
Sbjct: 67  LLKHSEEDVKVTATACITEITRITAPDAPYDDDKMKVIFQLTLEAFRKLSNVSGRCYMKA 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
           LSILD VAKVR CL+MLDLECD L++EMFQ FLK+IRSNHP  VF+AME IMT V+DESE
Sbjct: 127 LSILDAVAKVRLCLVMLDLECDNLILEMFQSFLKLIRSNHPTAVFSAMEAIMTNVLDESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           +VS DLLR +LASVRKENQ+ +  SWKL E+V + CA KL+  L +AVQS G +LDDYA 
Sbjct: 187 EVSSDLLRPILASVRKENQEATSISWKLAERVMSNCATKLQPYLMDAVQSLGASLDDYAP 246

Query: 249 IVACICGSDDENPQHG-HLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRN 307
           +V  IC ++ +N   G HL+    Q+ T  PD     E     D  S+S+ S  T A+ N
Sbjct: 247 VVMSICRNETDNIDDGKHLV---TQMHT--PDASI--EENPRTDAASESLISGSTVAAGN 299

Query: 308 EDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPN 367
            D+++K   S   ++CS  E+S+  + K        D++ + K+E   ++ P+KRGRKPN
Sbjct: 300 -DNILKGS-SKKSQKCS--EQSKIAETKI------PDNVESKKAEDTLDTVPKKRGRKPN 349

Query: 368 SLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSP 405
           SLMNP+EGY+H WI  GR+ +++  + KS+D+    SP
Sbjct: 350 SLMNPDEGYEHYWIGKGRERSRLSNQNKSNDQETKFSP 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089356|ref|XP_002308702.1| predicted protein [Populus trichocarpa] gi|222854678|gb|EEE92225.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 189/399 (47%), Positives = 267/399 (66%), Gaps = 10/399 (2%)

Query: 1   MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPT 60
           M S+  + ELE+QL +AGN LLNPP  VDE+++LLD+VE+ L+ VEQ+P +SM++AL P+
Sbjct: 1   MASNSSDKELEQQLLEAGNKLLNPPPSVDELLSLLDQVENCLSKVEQSPVKSMQNALSPS 60

Query: 61  MKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHA 120
              L+T+ L R S++DV+++V SCISEITRITAPD+PYDD+ MKE FQL VS+FENL   
Sbjct: 61  QNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDRMKEVFQLIVSSFENLDDK 120

Query: 121 SGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIM 180
           S + Y+K  SIL+TVAKVRSC++MLDLECD L++EMFQHF K IR +HP  VF++METIM
Sbjct: 121 SSQSYVKRASILETVAKVRSCVVMLDLECDALIIEMFQHFFKAIRDHHPEDVFSSMETIM 180

Query: 181 TLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRG 240
           +LV++ESED+S +LL +LLASV+K +++V P + +LGE+V   CAAK+K  L + V+S G
Sbjct: 181 SLVLEESEDISVELLSLLLASVKKGDEEVLPVARRLGEEVLESCAAKVKPYLIQTVKSLG 240

Query: 241 IALDDYAEIVACIC----GSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKS 296
           ++LDDY++IV  IC    GS ++N  H       N+  T E   P   E  +  D   KS
Sbjct: 241 VSLDDYSDIVGSICQEISGSVEQNDVHAGDENKVNEEETTEVATPEQAEPAN--DKCPKS 298

Query: 297 VTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLR-NVKSETEP 355
             SNG A    +DS+         E  ++ ++ +SID   +A PD S++ R  V +E+E 
Sbjct: 299 AVSNGVAQMEEDDSLADSDSMKKQEDDNKTDQLKSIDLPSTAEPDFSNAERVVVNTESEA 358

Query: 356 ESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRR 394
           E   +K  + P  L  P E    S + S +K  ++PG +
Sbjct: 359 EQTSKKSEKSPTKLAEPSES---SRVDSEKKAEELPGNK 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476152|ref|XP_002282819.2| PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera]

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/364 (51%), Positives = 255/364 (70%), Gaps = 4/364 (1%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELE+QL +AGN LL PP+ VDE++ LLD+VE+ L  VEQ+PS SM++AL  ++K L+T+ 
Sbjct: 7   ELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQ 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LLR SD+DV+++V +CISEITRITAPD+PYDD+ MKE FQL VS+FE LS  S R Y K 
Sbjct: 67  LLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
            SIL+TVAKVRSC++MLDLECD L++EMFQHFL  IR +HP  VF +METIMTLV++ESE
Sbjct: 127 TSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           D+  +LL  +LAS++K+NQ+V P + KLGEKVF  CA KLK  L +AV+S GI+LDDY++
Sbjct: 187 DIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCANKLKPCLMQAVKSLGISLDDYSK 246

Query: 249 IVACIC-GSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRN 307
           +V+ IC G+     Q+   +  +N  +    +  C GE    +D   KSV SNG   + N
Sbjct: 247 VVSSICQGTSSTADQNDDGVPEQNDDSEISIEAACPGEADPAMDRSPKSVMSNGIKQAAN 306

Query: 308 EDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPN 367
           +DS+V    S   +  +   +S  + ++     D+ D +  V+ E++PE   +KRGRKPN
Sbjct: 307 DDSLVDSNSSKKPDYGTNQSKSSKVPSEVEL--DSLD-VGKVEQESKPEQTTKKRGRKPN 363

Query: 368 SLMN 371
           + MN
Sbjct: 364 ASMN 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082067|emb|CBI21072.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/405 (47%), Positives = 257/405 (63%), Gaps = 45/405 (11%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELE+QL +AGN LL PP+ VDE++ LLD+VE+ L  VEQ+PS SM++AL  ++K L+T+ 
Sbjct: 7   ELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQ 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LLR SD+DV+++V +CISEITRITAPD+PYDD+ MKE FQL VS+FE LS  S R Y K 
Sbjct: 67  LLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
            SIL+TVAKVRSC++MLDLECD L++EMFQHFL  IR +HP  VF +METIMTLV++ESE
Sbjct: 127 TSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           D+  +LL  +LAS++K+NQ+V P + KLGEKVF  CA KLK  L +AV+S GI+LDDY++
Sbjct: 187 DIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCANKLKPCLMQAVKSLGISLDDYSK 246

Query: 249 IVACIC----------------GSDDENPQH--------------GHLIGSENQLATKEP 278
           +V+ IC                 +DD  PQ               G     E+QL     
Sbjct: 247 VVSSICQGTSSTADQNDDGVPEQNDDSGPQQNDDSAPEQKDDNIAGKNTVEESQLLRASS 306

Query: 279 D------------PPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQV 326
           D              C GE    +D   KSV SNG   + N+DS+V    S   +  +  
Sbjct: 307 DEAAQVDKEISIEAACPGEADPAMDRSPKSVMSNGIKQAANDDSLVDSNSSKKPDYGTNQ 366

Query: 327 ERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMN 371
            +S  + ++     D+ D +  V+ E++PE   +KRGRKPN+ MN
Sbjct: 367 SKSSKVPSEVEL--DSLD-VGKVEQESKPEQTTKKRGRKPNASMN 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766183|emb|CAN67967.1| hypothetical protein VITISV_002799 [Vitis vinifera]

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 257/650 (39%), Positives = 341/650 (52%), Gaps = 99/650 (15%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELE+QL +AGN LL PP+ VDE++ LLD+VE+ L  VEQ+PS SM++AL  ++K L+T+ 
Sbjct: 7   ELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQ 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LLR SD+DV+++V +CISEITRITAPD+PYDD+ MKE FQL VS+FE LS  S R Y K 
Sbjct: 67  LLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
            SIL+TVAKVRSC++MLDLECD L++EMFQHFL  IR +HP  VF +METIMTLV++ESE
Sbjct: 127 TSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           D+  +LL  +LAS++K+NQ+V P + KLGEKVF  CA KLK  L +AV+S GI+LDDY++
Sbjct: 187 DIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCAXKLKPCLMQAVKSLGISLDDYSK 246

Query: 249 IVACIC----------------GSDDENPQH--------------GHLIGSENQLATKEP 278
           +V+ IC                 +DD  PQ               G     E+QL     
Sbjct: 247 VVSSICQGTSSTADQNDDGVPEQNDDSGPQQNDDSAPEQKDDNIAGKNTVEESQLLRASS 306

Query: 279 D------------PPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQV 326
           D              C GE    +D   KSV SNG   + N+DS+V    S   +  +  
Sbjct: 307 DEAAQVDKEISIEAACPGEADPAMDRSPKSVMSNGIKQAANDDSLVDSNSSKKPDYGTNQ 366

Query: 327 ERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRK 386
            +S  + ++     D+ D +  V+ E++PE   +KRGRKPN+ MN  E  D    S    
Sbjct: 367 SKSSKVPSEVEL--DSLD-VGKVEQESKPEQTTKKRGRKPNASMNLIEPSDSRVSSEEES 423

Query: 387 IAKVPGRRKSDDKGVD--CS--PSLNQDSKKEALNLTDKMLADP----------TSASLK 432
                 ++     G D  C   PS+      E   +T   L+ P           S S  
Sbjct: 424 EKLSDHKKNQSKAGHDAPCEDPPSMEAAVPSENEKMTATQLSSPKALENESSYVASPSPS 483

Query: 433 SGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADF-----SLRKKP 486
             LPD SH R+ GR +K+   +NQ           S+ + E    SA       +  KK 
Sbjct: 484 RSLPDESHVRKVGRPRKK-DNLNQEVGKRRPGKRASSGITEEDKTSATMXDSVENPLKKS 542

Query: 487 EDRSDTEIKHRKRSKTNEEISQPPGYG--VSEKEAV-VPSADKEKPLQLSVTKKRRRSLV 543
             + DT       S   +E  +  G G  V EKE     S D EK + LS  K       
Sbjct: 543 GKKVDTSKNEDGSSLKPQEDRKKRGRGKAVLEKEMTKFLSKDDEKEM-LSSPK------- 594

Query: 544 VAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGK 593
                      S GK  K           DE++ E+TPK   K KHTSGK
Sbjct: 595 -----------SAGKSVK-----------DESHLEETPKMLSKGKHTSGK 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743633|emb|CBI36516.3| unnamed protein product [Vitis vinifera]

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 257/673 (38%), Positives = 354/673 (52%), Gaps = 91/673 (13%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELEEQL  AG  LL P   V+E+++LLDK+E  LA VEQ+PS+SM+ A+ P MK L+  +
Sbjct: 7   ELEEQLVAAGEELLKPLPCVEELLSLLDKLESFLAKVEQSPSKSMQTAVCPAMKALVVKE 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LL   D+DVR+ V SCISEITRITAPD+PYDD+ MKE F+L V+ FENLS  S R Y K 
Sbjct: 67  LLNHLDVDVRVVVASCISEITRITAPDAPYDDDQMKEIFELIVATFENLSDTSSRSYPKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
           +SIL+TVAKVRSC++MLDLECD L+++MF+HFL  IR  H   V+++METIMTLV++ESE
Sbjct: 127 VSILETVAKVRSCVVMLDLECDSLIIKMFKHFLGTIRETHSDDVYSSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           +VS +LL  LL S+R  NQDV   + KLG+KV   CA KL+  + +AV+  G  LD+Y E
Sbjct: 187 EVSPELLAPLLDSLRVGNQDVLLIARKLGKKVIQNCALKLRPYMMQAVEFMGFPLDNYYE 246

Query: 249 IVACICGSDDENPQHGHLIGSENQLATK--EPDPPCLGEVVHDVDGISKSVTSNGTAASR 306
           IVA IC    +  +H     S   +  K   PD  C G      +   K VTSNGT    
Sbjct: 247 IVASICQETSDAIKHNDANVSNECVDAKALAPDVSCSGGRDGTTNTSGKLVTSNGTVQIG 306

Query: 307 NEDSVVKDKLSN-VLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRK 365
             DS+V     N  L +  Q+ +S+  DA   A P+ SD +   KSET+ +   ++RGRK
Sbjct: 307 ISDSLVNPVSPNKGLVQSHQINQSKGNDATIKAEPE-SDPVDVEKSETKSKQPTKRRGRK 365

Query: 366 PNSLMNPEEGYDHSWISSGRKIAKVPGRRK-----SDDKGVDCSPSLNQ---DSKKEALN 417
             S     E    S I SG++  ++ G +           VD S ++       +KE   
Sbjct: 366 SCSSTAKTETSGQSQIDSGKEALELLGPKSCVGEIGSSTSVDPSSNIADVPFQHEKETTQ 425

Query: 418 LTDK-----MLADPTSASLKSGLPDGSHHRRG--RTKKQGSTVNQNADHNSLSVSLSTRV 470
           +  +      + +P   SL  G PDGS  +R   RTKK+GS  N  AD  S SV +   +
Sbjct: 426 IPSQEAGKNEMPNPL-PSLSEGQPDGSASKRSQRRTKKKGSK-NLEADLISTSVPMGNLL 483

Query: 471 EETASG----SADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADK 526
           ++   G    S     +K+ E  SD+E K +KR+                K+A+V + D 
Sbjct: 484 QDQVEGEVPPSTTVLTKKEFERASDSETKRQKRTG---------------KKALVENNDD 528

Query: 527 EKPLQL---SVTKK--------RRRSLVVAISAQNISEAS----GGKKKK---------- 561
           EK   L   ++ KK        ++    V +   N  E S     GKK +          
Sbjct: 529 EKTSTLGDDAIMKKKESREKQPKKSGKKVGLGVANEDEVSRDDQDGKKNRGRGKSNLKKD 588

Query: 562 ------------TSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDR 609
                       ++K   KS N +E +  +TP+T+ KRK T GKE               
Sbjct: 589 LNGELSIKEMFSSAKSNTKSQNKEEGHLLETPRTQSKRKRTPGKEAS------------- 635

Query: 610 DGSHSKETPKSEV 622
            GSH  ++P  E+
Sbjct: 636 -GSHDDKSPGEEL 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467897|ref|XP_003604233.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula] gi|355505288|gb|AES86430.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula]

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 184/389 (47%), Positives = 254/389 (65%), Gaps = 21/389 (5%)

Query: 44  NVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELM 103
           N++Q P   ++++L+  MK LI+++LL+ +D DV++SVT+C++EI RITAP+ PYDDE M
Sbjct: 45  NLDQNPPEPIQESLVLPMKTLISDELLKHTDEDVKISVTACLTEIARITAPNDPYDDENM 104

Query: 104 KEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKV 163
           KEFF+L V+AFENLSH SGR Y KAL+IL+ ++K++  L+MLDLECD LV+EMFQ FL++
Sbjct: 105 KEFFKLTVAAFENLSHVSGRRYEKALTILEKISKIKIFLIMLDLECDDLVIEMFQQFLRI 164

Query: 164 IRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTK 223
           IRSNHP  V  +ME +MT ++DESED+S DLLR LL SVRKENQ +SP SW LGEKV T 
Sbjct: 165 IRSNHPSSVIESMEIVMTGILDESEDISSDLLRPLLDSVRKENQTISPISWTLGEKVITN 224

Query: 224 CAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIG---SENQLATKE--P 278
           CA KLK  L +AV+S G AL++YAE +  IC +  E+P+  H +     EN L   +  P
Sbjct: 225 CAVKLKPYLMKAVESSGRALNEYAETITSICHNKSESPERNHSMAVQDVENNLDIPKDAP 284

Query: 279 DPPC--------LGEVVHDVDGISKSVTSN--GTAASRNEDSVVKDKLSNVLERCSQVER 328
           + PC            V DV  I+    S+   T A+  +D V K   S           
Sbjct: 285 EEPCDVTTGVEMDNTCVRDVQ-ITDETKSDIRSTNAATVDDEVTKSSDSKRKLHSCPTTN 343

Query: 329 SQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWI---SSGR 385
           S+  +AK S+     +S + + S+T+ ++ PRKR RKPNSLMNPEEGY+HS++   SS R
Sbjct: 344 SERRNAKTSSETGNLESDQELNSKTQLDTVPRKRARKPNSLMNPEEGYNHSFVHKQSSTR 403

Query: 386 KIAKVPGRRKSDDKGVDCSPSLNQDSKKE 414
           K ++    +K+ D     SPS N  S+K+
Sbjct: 404 KSSQ--SNKKAHDNSYALSPSDNPSSRKD 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515006|ref|XP_003526192.1| PREDICTED: uncharacterized protein LOC100790092 isoform 2 [Glycine max]

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 149/246 (60%), Positives = 198/246 (80%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELEEQL +AGN L++PPS V++++ LL++VE  L+ VEQ+P+ SM++AL P++K LI + 
Sbjct: 7   ELEEQLLEAGNKLVDPPSSVEDLLALLEQVESCLSRVEQSPTDSMQNALSPSLKALIADK 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LLR SD DV+++V SCISEITRITAP++PYDD+ MKE FQL VS+FENL     R Y K 
Sbjct: 67  LLRHSDDDVKIAVASCISEITRITAPEAPYDDDQMKEVFQLIVSSFENLHDKLSRSYSKM 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
           +SILDTVAKVRSC++MLDLECD L++EMFQHFLK IR +HP  VF++METIMTLV++ESE
Sbjct: 127 ISILDTVAKVRSCVVMLDLECDALILEMFQHFLKAIREHHPENVFSSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           D+S DLL  LL S++K+N++V P + KLGE+V   CA KLK  L +AV+S GI++DDY+ 
Sbjct: 187 DISLDLLSPLLGSIKKDNEEVFPIAQKLGERVLESCATKLKPYLVQAVKSLGISVDDYSA 246

Query: 249 IVACIC 254
           ++A IC
Sbjct: 247 VLASIC 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	726
TAIR|locus:2116787	873	AT4G31880 [Arabidopsis thalian	0.796	0.662	0.340	2.5e-83
TAIR|locus:2200557	990	AT1G15940 [Arabidopsis thalian	0.724	0.531	0.347	3.9e-78
TAIR|locus:2025712	774	AT1G80810 [Arabidopsis thalian	0.555	0.520	0.374	6.9e-63
TAIR|locus:2169058	1607	AT5G47690 [Arabidopsis thalian	0.308	0.139	0.441	4.8e-52
UNIPROTKB|E2R7R4	1337	PDS5A "Uncharacterized protein	0.265	0.144	0.269	2.4e-13
UNIPROTKB|Q29RF7	1337	PDS5A "Sister chromatid cohesi	0.265	0.144	0.269	3.9e-13
RGD|1307094	1333	Pds5a "PDS5, regulator of cohe	0.265	0.144	0.269	9.7e-13
UNIPROTKB|F1NIQ3	1330	PDS5A "Sister chromatid cohesi	0.265	0.145	0.263	1.3e-12
UNIPROTKB|Q5F3V3	1330	PDS5A "Sister chromatid cohesi	0.265	0.145	0.263	1.3e-12
SGD|S000004681	1277	PDS5 "Protein involved in sist	0.322	0.183	0.266	2.5e-12

TAIR|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
 Identities = 208/611 (34%), Positives = 319/611 (52%)

Query:     4 SKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKG 63
             S  + ELE Q+ +AG  L++PPS +DE+++ LDK+   LA VEQ+P  SM++AL P MKG
Sbjct:     2 SDSDKELENQIIEAGEKLIDPPSSLDELLSFLDKLFVSLAEVEQSPPDSMQNALTPLMKG 61

Query:    64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGR 123
             L+   L + SD+DV+++V +CISEITRITAPD+PYDD+ MKE F+L VS+FE+L   S R
Sbjct:    62 LVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSR 121

Query:   124 YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLV 183
              Y K +SIL+TVAKVRSC++MLDLECD L++EMFQHFLK IR +H   VF++ME IMTLV
Sbjct:   122 SYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIMTLV 181

Query:   184 IDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIAL 243
             ++ESED+  ++L  +L SV+K+++ +S  S +L E+V + CA+KLKT L EAV+S G+ L
Sbjct:   182 LEESEDIPSEMLSPILHSVKKDDE-ISQVSRRLAEQVLSNCASKLKTYLTEAVKSSGVPL 240

Query:   244 DDYAEIVACICGSDDENPQHGHLIGSENQLAT----KEPDPPCLGEVVH----DV--DGI 293
             D Y+ IVA IC       Q   ++ +E + +     +E +     E+      D   D  
Sbjct:   241 DKYSNIVASICEGTFSALQQDQVVANEKEDSQGHIKRETEVEKAAEISTPERTDAPKDES 300

Query:   294 SKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVK--- 350
              KS  SNG A  +N+ SV  D +    +  ++ E  Q  + + +   +T++   +V+   
Sbjct:   301 GKSGVSNGVA-QQNDSSVDTDSMKKQDDTGAKDEPQQLDNPRNTDLNNTTEEKPDVEHQI 359

Query:   351 SETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQD 410
              E E ES+  K+          EE      + S   +   P      D  V  + S   +
Sbjct:   360 EEKENESSSVKQADLSKDSDIKEETEPAELLDSKDVLTSPPV-----DSSVTAATSSENE 414

Query:   411 SKKEALNLTDKMLADPT----SASLKSGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVS 465
               K    L  K   D T    S S+   LP+ S  ++    KK+ S+  +     S++  
Sbjct:   415 KNKSVQILPSKTSGDETANVSSPSMAEELPEQSVPKKTANQKKKESSTEEVKPSASIATE 474

Query:   466 LSTRVEETASGSADFSLRKKPEDRSDTE--IKHRKRSKTNEEISQPPGYGVSEKEAVVPS 523
               +    T+         KK    S T+  +   K+S +  ++++      SEK+ V   
Sbjct:   475 EVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKVAKQ-----SEKKVVGSD 529

Query:   524 ADKEKPLQLSVTKKRRRSLVVAISAQNISEAXXXXXXXXXXXXXXXPNIDENYS-EDTPK 582
               +E        KK  R   +   + + S                    +   + E++P 
Sbjct:   530 NAQESTKPKEEKKKPGRGKAIDEESLHTSSGDNEKPAVSSGKLASKSKKEAKQTVEESPN 589

Query:   583 TEIKRKHTSGK 593
             +  KRK + G+
Sbjct:   590 SNTKRKRSLGQ 600

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2200557 AT1G15940 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 3.9e-78, Sum P(2) = 3.9e-78
 Identities = 192/553 (34%), Positives = 287/553 (51%)

Query:     7 EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT 66
             E   E+ L DA   LL P    D  ++LL+ +E LLA VEQ  S S++ AL P M+ L++
Sbjct:     9 EFSKEQALTDAAENLLKPHFSTDATLSLLEVMESLLATVEQDLSSSVQKALHPPMRALVS 68

Query:    67 NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM 126
              DLLR  D DVR+SV SC++EI RITAP++PY+DE MK+ FQ+ + AFE L+ AS R Y 
Sbjct:    69 ADLLRNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIEAFEKLADASSRSYR 128

Query:   127 KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186
             KA  IL+TVAKVRS L+MLDLECD LV+EMFQ FLK+IR +HP  V  +METIM  VIDE
Sbjct:   129 KAEVILETVAKVRSSLVMLDLECDDLVLEMFQRFLKIIRPDHPQLVLVSMETIMITVIDE 188

Query:   187 SEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDY 246
             SE+V  DLL ILL +V+K++QDVSP +  L EKV + C  KL+  + EA++S G +LD Y
Sbjct:   189 SEEVPMDLLEILLTTVKKDSQDVSPAALTLVEKVLSSCTCKLQPCIMEALKSSGTSLDMY 248

Query:   247 AEIVACICGSDDENPQ-HGHLIGSENQLATKEPDPPCLGEVVHD---VDGISKSVTSNGT 302
             + +V+ IC S+    Q H  +   +N+   K  +    G+VV      D ++  ++  GT
Sbjct:   249 SPVVSSICQSEFATTQAHNDVKPKDNEADEKISE----GQVVPSDSLEDKLNLGLSRKGT 304

Query:   303 AASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKR 362
              + R+     +    +     +    S+S DA+ ++G       +  KS   PE     +
Sbjct:   305 RSKRSARGGTRRANGDEKVITANEGLSESTDAETASGSTRKRGWKP-KSLMNPEEGYSFK 363

Query:   363 GRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLN----QDSKKEALNL 418
                   +   E G D S      K   +P +    ++ V  S S +      S+K +   
Sbjct:   364 TSSSKKVQEKELG-DSSLGKVAAKKVPLPSKVGQTNQSVVISLSSSGRARTGSRKRSRTK 422

Query:   419 TDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSA 478
              ++   D +S + +      +  +    K+  +  N     + +    S++ E+  +G A
Sbjct:   423 MEETDHDVSSVATQPAKKQ-TVKKTNPAKEDLTKSNVKKHEDGIKTGKSSKKEKADNGLA 481

Query:   479 DFSLRKKPEDR-----SDTEIKHRKRSKTNEE---ISQP-PGYGVSEKE---AVVPSADK 526
               S +K   +      S  ++ H    K N E   +  P P    S+K+   A  P+  K
Sbjct:   482 KTSAKKPLAETMMVKPSGKKLVHSDAKKKNSEGASMDTPIPQSSKSKKKDSRATTPATKK 541

Query:   527 EKPLQLSVTKKRR 539
              +    S  K +R
Sbjct:   542 SEQAPKSHPKMKR 554

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

TAIR|locus:2025712 AT1G80810 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
 Identities = 161/430 (37%), Positives = 241/430 (56%)

Query:    53 MRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVS 112
             M+ AL+P+   L++ DLL   D DVR+SV SC++EI RITAP++PY D+LMKE F+L + 
Sbjct:     1 MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60

Query:   113 AFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFV 172
             AFE L+ AS R Y KA  +LD VAKV+SCL+MLDLEC  L+++MF++F K IRS+HP  V
Sbjct:    61 AFEKLADASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLV 120

Query:   173 FAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232
             F++ME IM  +IDE+E VS DLL  LLA+V+KENQ+VSP SW L EKV ++CA KLK  +
Sbjct:   121 FSSMELIMIAIIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYI 180

Query:   233 KEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHD-VD 291
              EA++SRG +LD Y+ +V+ IC S    P+  H     + + TKE +     ++ H   +
Sbjct:   181 IEALKSRGTSLDMYSPVVSSICQSVFNTPKV-H-----SPVNTKEHEEKL--DLGHSRKE 232

Query:   292 GISKSVTS----NGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTS-DSL 346
              +SKS +     + T     ++ V     S++L++  +  RS+S DA+ +       +SL
Sbjct:   233 NLSKSSSKRPARHETRGINEKEKVRNGNKSSLLKQSLKQVRSESTDAEITGKRGRKPNSL 292

Query:   347 RNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRK---SDDKGVDC 403
              N + + +      KR     S     +      +SS   + KVP ++     ++     
Sbjct:   293 MNPE-DYDISWLSGKRDPLKTSSNKKIQKKGSGGVSS---LGKVPAKKTPLPKENSPATS 348

Query:   404 SPSLNQDSKKEALNLTDK-----MLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNAD 458
             S SL    K+  + + +       L+ P    L S   D   ++    +K G++  Q   
Sbjct:   349 SRSLTGSLKRSRVKMDESDYDSDSLSSPRLKKLASCFRDEEPNQED-DRKIGNSSKQTRS 407

Query:   459 HNSLSVSLST 468
              N L  S  T
Sbjct:   408 KNGLEKSQKT 417

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 4.8e-52, Sum P(4) = 4.8e-52
 Identities = 99/224 (44%), Positives = 148/224 (66%)

Query:    11 EEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLL 70
             EEQLK+ G+ L   P   D ++ LL +    L+ +EQ+P  ++  ++ P +  +I  ++L
Sbjct:     6 EEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVIKPEIL 65

Query:    71 RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALS 130
                D DV+L V SC+SEITRITAP++PY D +MK+ FQL VSAF  L+  SG  + + + 
Sbjct:    66 NHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSFGRRVL 125

Query:   131 ILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV 190
             IL+TVAK RSC++MLDLECD LV E+F  FL V R +HP  VF++M+ IM ++++ESEDV
Sbjct:   126 ILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLEESEDV 185

Query:   191 SWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKE 234
                LL ILL+ + +   DV   + +L  KV   CA K+++++K+
Sbjct:   186 QEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQ 229

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0007067 "mitosis" evidence=RCA

UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
 Identities = 53/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    39 DEMIKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 97

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    98 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 157

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   158 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 217

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  S+ L  KV  K
Sbjct:   218 KNLNKQSFDLA-KVLLK 233

GO:0008156 "negative regulation of DNA replication" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
 Identities = 53/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    39 DEMIKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 97

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    98 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 157

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   158 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 217

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  S+ L  KV  K
Sbjct:   218 KNLNKQSFDLA-KVLLK 233

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008156 "negative regulation of DNA replication" evidence=IMP

GO:0000785 "chromatin" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 9.7e-13, Sum P(3) = 9.7e-13
 Identities = 53/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    38 DEMIKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    97 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   157 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  S+ L  KV  K
Sbjct:   217 KNLNKQSFDLA-KVLLK 232

GO:0000785 "chromatin" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007067 "mitosis" evidence=IEA

GO:0008156 "negative regulation of DNA replication" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 52/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    33 DEVVKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 91

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    92 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 151

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   152 EDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 211

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  ++ L  KV  K
Sbjct:   212 KNLNKQAFDLA-KVLLK 227

GO:0000785 "chromatin" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008156 "negative regulation of DNA replication" evidence=IEA

UNIPROTKB|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 52/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    33 DEVVKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 91

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    92 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 151

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   152 EDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 211

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  ++ L  KV  K
Sbjct:   212 KNLNKQAFDLA-KVLLK 227

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008156 "negative regulation of DNA replication" evidence=ISS

SGD|S000004681 PDS5 "Protein involved in sister chromatid condensation and cohesion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 201 (75.8 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
 Identities = 67/251 (26%), Positives = 120/251 (47%)

Query:    20 LLLNPP--SPVDEVIN---LLDKVEHL---LANVEQAPSRSMRDALLPTMKGLITNDLLR 71
             L  N P  S  D++I+   LLD+++ L   LA+++Q    +    L      L++  LL+
Sbjct:     9 LKFNSPIISTSDQLISTNELLDRLKALHEELASLDQ--DNTDLTGLDKYRDALVSRKLLK 66

Query:    72 RSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSI 131
               D+ +R     C+S+I R+ APD+PY D  + + F+L +S FE L      Y+++   +
Sbjct:    67 HKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQENGYHIQQTYL 126

Query:   132 LDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV 190
             +  + + RS +L+ DL   + L++E+F  F    +S  P  +F  +  I+  VI E + V
Sbjct:   127 ITKLLEYRSIVLLADLPSSNNLLIELFHIFYDPNKS-FPARLFNVIGGILGEVISEFDSV 185

Query:   191 SWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR-GIALDDYAEI 249
               ++LR++       N +  P     G  V + C  ++   L +   +R    L  Y   
Sbjct:   186 PLEVLRLIFNKFLTYNPNEIPE----GLNVTSDCGYEVSLILCDTYSNRMSRHLTKYYSE 241

Query:   250 VACICGSDDEN 260
             +     +DD N
Sbjct:   242 IIHEATNDDNN 252

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006302 "double-strand break repair" evidence=IMP

GO:0007129 "synapsis" evidence=IMP

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007126 "meiosis" evidence=IMP

GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0000798 "nuclear cohesin complex" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	726
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.004
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 13/234 (5%)

Query: 483  RKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSL 542
            RK  E +   E K    +K  EE  +       E +     A K    +    + ++++ 
Sbjct: 1278 RKADELKKAEEKKKADEAKKAEEKKK-----ADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332

Query: 543  VVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKT-EIKRKHTSGKEEKKMISK 601
                 A+   +A+   K +    A ++   +E       K  E K+K  + K++ +   K
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392

Query: 602  AR--AKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKK 659
            A    K ++ D   + E  K+   K    + KKK   K  A  + K   E     E KKK
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452

Query: 660  LTARKEEKKKISKAGAKSLDGNCSAETPKTG-VKRKLTAGKEMDSEAPALNEQL 712
                 EE KK  +A  K+ +   + E  K     +K    K+   EA    ++ 
Sbjct: 1453 ----AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	726
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	100.0
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	99.74
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	92.11
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	84.08
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	81.5

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.8e-52  Score=488.48  Aligned_cols=246  Identities=35%  Similarity=0.558  Sum_probs=233.3

Q ss_pred             HHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhc
Q 004863           13 QLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRIT   92 (726)
Q Consensus        13 ~l~~~G~kLis~piStdELLKRLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIy   92 (726)
                      +.-.-||+++..+++++|||+||++|..||++++|++.+  .++|.|++.+|+++.||+|+|+|||+|||||++||||||
T Consensus         4 ~~~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~~~--~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~   81 (1266)
T KOG1525|consen    4 QFYPPGCLTSLNPISKDELLKRLKKLANCLASLDQDNLD--LASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIY   81 (1266)
T ss_pred             cccCCCCccccCcccHHHHHHHHHHHHHHHhhcccCchh--HHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHh
Confidence            445679999999999999999999999999999999966  899999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhH
Q 004863           93 APDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFV  172 (726)
Q Consensus        93 APDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V  172 (726)
                      ||||||++.||+|||+||++||.||.|+.+|||.|||||||+||.||.|++|.|.+|++|+.+||.+||+++|.+||.+|
T Consensus        82 aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v  161 (1266)
T KOG1525|consen   82 APEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKV  161 (1266)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999999999999999999999999999999999888887778999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHHHHHHHHHHhc-------CCCc-h
Q 004863          173 FAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR-------GIAL-D  244 (726)
Q Consensus       173 ~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLqp~I~q~~ns~-------G~~L-~  244 (726)
                      +. |.+||+.+|.|.+.||.++|++||.+|+++.+++.+.|+.||..+|..|++.+.+.|++||++.       +.++ .
T Consensus       162 ~~-~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~  240 (1266)
T KOG1525|consen  162 FN-MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI  240 (1266)
T ss_pred             HH-HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence            99 9999999999999999999999999999999999999999999999999999999999999754       2223 4


Q ss_pred             hHHHHHHHHhcCCCCCC
Q 004863          245 DYAEIVACICGSDDENP  261 (726)
Q Consensus       245 ~YseIv~sIcq~~s~~~  261 (726)
                      .||+||+.+-.+++.++
T Consensus       241 ~~he~i~~L~~~~p~ll  257 (1266)
T KOG1525|consen  241 KYHELILELWRIAPQLL  257 (1266)
T ss_pred             HHHHHHHHHHHhhHHHH
Confidence            89999999999887665

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=1.5e-17  Score=198.87  Aligned_cols=247  Identities=31%  Similarity=0.376  Sum_probs=231.7

Q ss_pred             HHHHhccccCCCCCC--HHHHHHHHHHH--------HHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhH
Q 004863           13 QLKDAGNLLLNPPSP--VDEVINLLDKV--------EHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVT   82 (726)
Q Consensus        13 ~l~~~G~kLis~piS--tdELLKRLkkL--------~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRayVA   82 (726)
                      ++..+|.+.+.++.+  .++||..+-+.        +-.|..+.|....++++++.+++..|+.=.+..|++-++.+-..
T Consensus       409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q  488 (1266)
T KOG1525|consen  409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ  488 (1266)
T ss_pred             HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence            677899999999999  99999999877        78888999988888999999999999999999999999999999


Q ss_pred             HHHHHHhh--hcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHH--HHHHHhhhhhhheeecc---CCchHHHHH
Q 004863           83 SCISEITR--ITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKAL--SILDTVAKVRSCLLMLD---LECDKLVVE  155 (726)
Q Consensus        83 cCLaDILR--IyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~--yLLEsLAeVKS~VLmlD---LE~ddLI~e  155 (726)
                      .||.+++|  |.+|..||+++.|+.||..|+..+..|.|+.+..|....  .+|+.++.+++|+.|++   +.|.++...
T Consensus       489 ~~ls~~vr~~I~~~k~~~~d~~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~  568 (1266)
T KOG1525|consen  489 SRLSEEVRDYITLSKTPNTDDSMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLIT  568 (1266)
T ss_pred             HHHHHHHHHHhccccCCCccHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            99999999  999999999999999999999999999999887555443  59999999999999999   569999999


Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHHHHHHHH
Q 004863          156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEA  235 (726)
Q Consensus       156 LFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLqp~I~q~  235 (726)
                      ||+.||..++..++.+++..|..+|++.|.+   |+.+++..|+..+...+......+..+++.|+..|+-++.+||.+.
T Consensus       569 v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~  645 (1266)
T KOG1525|consen  569 VKEILFELGRKKQSKNLFSSMEKELIERIAE---VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEA  645 (1266)
T ss_pred             HHHHHHHHhhhccccchHHHHHHHHHHHhcc---hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHH
Confidence            9999999999999999999999999999999   9999999999999988888899999999999999999999999999


Q ss_pred             HHhcCCCchhHHHHHHHHhcCCCCCCC
Q 004863          236 VQSRGIALDDYAEIVACICGSDDENPQ  262 (726)
Q Consensus       236 ~ns~G~~L~~YseIv~sIcq~~s~~~~  262 (726)
                      |...+..+..|++++.+||+...+..+
T Consensus       646 ls~~~~~~~~~s~~v~~i~~~~~~~~~  672 (1266)
T KOG1525|consen  646 LSSIHPDLFKYSESVLSILEKLFSEPD  672 (1266)
T ss_pred             hhhcCcchhhhhHHHHHHHHHhccchh
Confidence            999999999999999999999988773

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.11  E-value=2.2  Score=51.77  Aligned_cols=117  Identities=9%  Similarity=0.140  Sum_probs=73.9

Q ss_pred             CCCCCcchhhHHHHHHHhhhhhhheeeccCC---chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-CCHH
Q 004863          118 SHASGRYYMKALSILDTVAKVRSCLLMLDLE---CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-VSWD  193 (726)
Q Consensus       118 sD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE---~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~-VP~e  193 (726)
                      .+|++|-|  ++||+|+++-+=-  ..++-+   --.+...||=.|-.+.+.+. .+...+...||+.+++-+.. +|..
T Consensus       603 KNPs~P~f--nHYLFEsi~~li~--~t~~~~~~~vs~~e~aL~p~fq~Il~eDI-~EfiPYvfQlla~lve~~~~~ip~~  677 (960)
T KOG1992|consen  603 KNPSNPQF--NHYLFESIGLLIR--KTCKANPSAVSSLEEALFPVFQTILSEDI-QEFIPYVFQLLAVLVEHSSGTIPDS  677 (960)
T ss_pred             cCCCCchh--HHHHHHHHHHHHH--HHhccCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchh
Confidence            44566633  5789999976511  123333   13466777755555545443 34556677899999998876 7766


Q ss_pred             H---HHHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHH-----HHHHHHHHhc
Q 004863          194 L---LRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK-----TNLKEAVQSR  239 (726)
Q Consensus       194 V---LDvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLq-----p~I~q~~ns~  239 (726)
                      .   +-.||+.-+..-....|+.-+|-...|...+..+.     .+|-.+|+.|
T Consensus       678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkL  731 (960)
T KOG1992|consen  678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKL  731 (960)
T ss_pred             HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHH
Confidence            4   34444444555678889988888888877665544     4455666655

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.08  E-value=10  Score=41.88  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             hhccCCCcCchhhhHHHHHHHhhhc
Q 004863           68 DLLRRSDMDVRLSVTSCISEITRIT   92 (726)
Q Consensus        68 ~LLkHKDkdVRayVAcCLaDILRIy   92 (726)
                      .||.++|..||..+..||..|.+.+
T Consensus       274 ~lL~s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  274 KLLSSSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred             HHhhcccchhehhHHHHHHHhhccc
Confidence            5778999999999999999999885

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=81.50  E-value=0.83  Score=38.57  Aligned_cols=13  Identities=31%  Similarity=0.780  Sum_probs=9.6

Q ss_pred             ccCeeEEecCCCC
Q 004863          713 VGSRIKVWWPMDE  725 (726)
Q Consensus       713 VGsriKVWWP~D~  725 (726)
                      .|.+|.||||++.
T Consensus         8 ~Ge~V~~rWP~s~   20 (55)
T PF09465_consen    8 IGEVVMVRWPGSS   20 (55)
T ss_dssp             SS-EEEEE-TTTS
T ss_pred             CCCEEEEECCCCC
Confidence            5899999999985

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	726
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 2e-09
 Identities = 75/521 (14%), Positives = 140/521 (26%), Gaps = 163/521 (31%)

Query: 4   SKREIELEEQLKDAGNLLLNPPSPVDEV-INLLDKVEHLLANVEQAPSRSMRDALLPTMK 62
           S       EQ     + L N      +  ++ L     L   + +   R  ++ L+  + 
Sbjct: 106 SMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVL 159

Query: 63  G----LITNDLLRRSDMDVR-------LSVTSCISEITRITAPDSPYDDELMKEFFQLAV 111
           G     +  D+     +  +       L++ +C S  T +         E++++      
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---------EMLQKLLYQID 210

Query: 112 SAFENLSHASGRYYMK------ALSILDTVAKVRSCLLMLDLECDKLVVEMFQH------ 159
             + + S  S    ++       L  L       +CLL+L    +      F        
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 160 ---------FLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVS 210
                    FL    + H           MTL  DE + +    L      + +E    +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIV-ACICGSDDENPQHGHLIGS 269
           P    +        A  ++  L      + +  D    I+ + +                
Sbjct: 327 PRRLSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSL---------------- 363

Query: 270 ENQLATKE-----------PDPPCLGEVVHDVDGISKSVTS----NGTAASRNEDSVVKD 314
            N L   E           P              I   + S    +     +++  VV +
Sbjct: 364 -NVLEPAEYRKMFDRLSVFPP---------SAH-IPTILLSLIWFDVI---KSDVMVVVN 409

Query: 315 KLSN--VLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEP-------ESAPRKRGRK 365
           KL    ++E+    E + SI       P     L+ VK E E        +     +   
Sbjct: 410 KLHKYSLVEK-QPKESTISI-------PSIYLELK-VKLENEYALHRSIVDHYNIPKTFD 460

Query: 366 PNSLM-NPEEGY--------------------------DHSWISSGRKIAKVPGRRKSDD 398
            + L+    + Y                          D  ++   +KI      R    
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKI------RHDST 512

Query: 399 KGVDCSPSLN--QDSKKEALNLTDKMLADPTSASLKSGLPD 437
                   LN  Q  K     + D    DP    L + + D
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDN---DPKYERLVNAILD 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	726
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	91.75
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	89.71
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	89.03
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	88.79
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	88.71
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	88.09
1qgr_A	876	Protein (importin beta subunit); transport recepto	86.74
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	84.58
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	83.36
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	82.78
2x1g_F	971	Cadmus; transport protein, developmental protein,	81.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	80.05

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=91.75  E-value=1.9  Score=41.25  Aligned_cols=149  Identities=9%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             HHHHHhhhhhhhc-cCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhh
Q 004863           58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVA  136 (726)
Q Consensus        58 ~pl~k~LVs~~LL-kHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLA  136 (726)
                      ..++..|.  .+| +.++..||..++-||..|.+-..++  | ..++..|+..++..|.   |....--......|.++.
T Consensus        55 ~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~-~~~~~~ilp~ll~~l~---d~~~~vr~~a~~aL~~~~  126 (242)
T 2qk2_A           55 GALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKR--F-SNYASACVPSLLEKFK---EKKPNVVTALREAIDAIY  126 (242)
T ss_dssp             HHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGG--G-HHHHHHHHHHHHHGGG---CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence            34444443  245 4788889999999999999876652  2 3466666666666654   554444445566666665


Q ss_pred             hhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCCHHHHHHHHHHhhccCCCCCchHH
Q 004863          137 KVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVRKENQDVSPTSW  214 (726)
Q Consensus       137 eVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE--~VP~eVLDvIL~~ll~~~ks~~PaAy  214 (726)
                      ..        +.    +..++..++..+.... ..|......+|..++....  .+....+..|+..+..--.+..+.-+
T Consensus       127 ~~--------~~----~~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR  193 (242)
T 2qk2_A          127 AS--------TS----LEAQQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR  193 (242)
T ss_dssp             TT--------SC----HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             Hc--------CC----HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHH
Confidence            42        11    2344555566666554 4788888888888887753  34455555555544433234444444


Q ss_pred             HHHHHHHhhhHHH
Q 004863          215 KLGEKVFTKCAAK  227 (726)
Q Consensus       215 kLA~~VI~~CadK  227 (726)
                      .-|...+......
T Consensus       194 ~~A~~~l~~l~~~  206 (242)
T 2qk2_A          194 DSSAEALGTLIKL  206 (242)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5554444443333

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=89.71  E-value=3.2  Score=45.87  Aligned_cols=162  Identities=11%  Similarity=0.105  Sum_probs=79.8

Q ss_pred             hccCCC--cCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhccc--------CCCC-CcchhhHHHHHHHhhh
Q 004863           69 LLRRSD--MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL--------SHAS-GRYYMKALSILDTVAK  137 (726)
Q Consensus        69 LLkHKD--kdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~L--------sD~s-sp~Y~q~~yLLEsLAe  137 (726)
                      +|.+.|  ..||..++.+|..|.....++   ....+..++..++..|...        .+.+ .....-+..+++.|..
T Consensus       506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~  582 (861)
T 2bpt_A          506 AANRIDNEFNARASAFSALTTMVEYATDT---VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA  582 (861)
T ss_dssp             HHTCSCCGGGHHHHHHHHHHHHHHHCCGG---GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCcchHHHHHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence            456555  689999999999999875443   1234555555555555432        1111 1222223344444443


Q ss_pred             hhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc----CCCCHHHHHHHHHHhhccCCCCCchH
Q 004863          138 VRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES----EDVSWDLLRILLASVRKENQDVSPTS  213 (726)
Q Consensus       138 VKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeES----E~VP~eVLDvIL~~ll~~~ks~~PaA  213 (726)
                      +=..   +.-+....+..++..++..++...+..|.......+..++.-.    ...-..++..|+..+...+......|
T Consensus       583 l~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a  659 (861)
T 2bpt_A          583 VIRK---SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA  659 (861)
T ss_dssp             HHHH---CGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHH---hhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            3111   1112234556666666666665443134333333333333222    11123466666666633333233345


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHH
Q 004863          214 WKLGEKVFTKCAAKLKTNLKEAV  236 (726)
Q Consensus       214 ykLA~~VI~~CadKLqp~I~q~~  236 (726)
                      ..+...++..+...+.||+..++
T Consensus       660 ~~~l~~l~~~~~~~~~~~~~~l~  682 (861)
T 2bpt_A          660 VGFIADISNSLEEDFRRYSDAMM  682 (861)
T ss_dssp             HHHHHHHHHHTGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHhchhccchHHHHH
Confidence            55555666666666666655544

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=89.03  E-value=1.2  Score=50.30  Aligned_cols=159  Identities=9%  Similarity=0.167  Sum_probs=89.6

Q ss_pred             CCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCCchHH
Q 004863           73 SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKL  152 (726)
Q Consensus        73 KDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE~ddL  152 (726)
                      .+......+.-||.-|.....+. -...+.+..|+..++..+..|.|.+...    ..+++.++.+-..+ ..  ..-..
T Consensus       495 ~~~~~~~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~----~~~~~~l~~i~~~~-g~--~~~~~  566 (852)
T 4fdd_A          495 YQHKNLLILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPLLECLSSVATAL-QS--GFLPY  566 (852)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHHHHHSCTTCTTH----HHHHHHHHHHHHHH-GG--GGHHH
T ss_pred             hChHHHHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHH-hH--hHHHH
Confidence            33444455667777776554332 1224567788888888888887754333    25666666553222 11  22233


Q ss_pred             HHHHHHHHHHHhhcC---------------C-chhHHHHHHHHHHHHhcccCC-C-----CHHHHHHHHHHhhccCCCCC
Q 004863          153 VVEMFQHFLKVIRSN---------------H-PHFVFAAMETIMTLVIDESED-V-----SWDLLRILLASVRKENQDVS  210 (726)
Q Consensus       153 I~eLFktFFdiVr~d---------------h-p~~V~~~M~dIMs~VIeESE~-V-----P~eVLDvIL~~ll~~~ks~~  210 (726)
                      +..+|..++..++..               . ...+.....+.+..++...+. +     ...++..|+..+-.......
T Consensus       567 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr  646 (852)
T 4fdd_A          567 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR  646 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence            344444444433321               1 133555555555555544321 1     13578877777754444445


Q ss_pred             chHHHHHHHHHhhhHHHHHHHHHHHHHhc
Q 004863          211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSR  239 (726)
Q Consensus       211 PaAykLA~~VI~~CadKLqp~I~q~~ns~  239 (726)
                      -.|+.+-..++..|...+.+|+..++..+
T Consensus       647 ~~a~~~l~~l~~~~~~~~~~~l~~~lp~l  675 (852)
T 4fdd_A          647 QSSFALLGDLTKACFQHVKPCIADFMPIL  675 (852)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            56777778888888888999988877544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=88.79  E-value=4  Score=48.11  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=42.9

Q ss_pred             ccCCCcCchhhhHHHHHHHhhhcCCC---CCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhh
Q 004863           70 LRRSDMDVRLSVTSCISEITRITAPD---SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV  138 (726)
Q Consensus        70 LkHKDkdVRayVAcCLaDILRIyAPD---APYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeV  138 (726)
                      |.+.+..||..++-||..|.+.+.|+   ..+......+++.+++..|..     ++.+..+.+.|+.|.++
T Consensus        95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHH
Confidence            45677889999999999999998887   344445677777777776642     23345555566665554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=88.71  E-value=0.53  Score=54.11  Aligned_cols=145  Identities=13%  Similarity=0.114  Sum_probs=101.5

Q ss_pred             hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863           69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE  148 (726)
Q Consensus        69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE  148 (726)
                      -|...|.|||+.+|.||..|.         ..+++..|+..+-++|..|.| -+++=..-+-||..|-..... ...  +
T Consensus       307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~~-a~~--d  373 (800)
T 3oc3_A          307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPE-LSI--P  373 (800)
T ss_dssp             HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCTT-CCC--C
T ss_pred             hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCcc-ccc--C
Confidence            345678999999999999988         236799999999999999966 455556666677666555421 111  1


Q ss_pred             chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHh--hhHH
Q 004863          149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFT--KCAA  226 (726)
Q Consensus       149 ~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~--~Cad  226 (726)
                       ..|+-.||--|..     .-.+|+.+....|..++      -..++..|+++++=+..   .....++.+|..  ... 
T Consensus       374 -p~LVPRL~PFLRH-----tITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~n---eeIl~lS~~VWk~r~~L-  437 (800)
T 3oc3_A          374 -PERLKDIFPCFTS-----PVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEK---DEIREMAIKLLKKRRDL-  437 (800)
T ss_dssp             -SGGGGGTGGGGTC-----SSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSC---HHHHHHHHHHHHTCSCC-
T ss_pred             -hHHHHHHHhhhcC-----CcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHH-
Confidence             2566666544432     23568887777776666      67899999999875443   345667777775  222 


Q ss_pred             HHHHHHHHHHHhcCCCc
Q 004863          227 KLKTNLKEAVQSRGIAL  243 (726)
Q Consensus       227 KLqp~I~q~~ns~G~~L  243 (726)
                       +++.|+.+.+-.|+++
T Consensus       438 -l~~wi~L~MtPIGv~f  453 (800)
T 3oc3_A          438 -PKNLILHFMNVIGGSL  453 (800)
T ss_dssp             -CHHHHHHHHHHTTSCS
T ss_pred             -HHHHHHHhcCcCCCcc
Confidence             9999999999999983

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=88.09  E-value=20  Score=42.25  Aligned_cols=104  Identities=10%  Similarity=0.056  Sum_probs=62.5

Q ss_pred             hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863           69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE  148 (726)
Q Consensus        69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE  148 (726)
                      .|.+.+..||..++.||..|...+.+      .++..|+..++..|   .|++...   +......|+.+-..+   .-+
T Consensus        56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~v---R~~a~~~L~~i~~~l---~~~  120 (1230)
T 1u6g_C           56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQL---RDISSIGLKTVIGEL---PPA  120 (1230)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSHH---HHHHHHHHHHHHHHC---C--
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHh---cCCcHHH---HHHHHHHHHHHHHhC---CCc
Confidence            35689999999999999999975422      56777777777664   4544322   333444444332211   111


Q ss_pred             ------chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 004863          149 ------CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES  187 (726)
Q Consensus       149 ------~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeES  187 (726)
                            ......+++..++..+.+.....+......++..+++..
T Consensus       121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C          121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence                  123456666666666653234567777777788887643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=86.74  E-value=4.6  Score=44.70  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             hccCCCcCchhhhHHHHHHHhhhcCC
Q 004863           69 LLRRSDMDVRLSVTSCISEITRITAP   94 (726)
Q Consensus        69 LLkHKDkdVRayVAcCLaDILRIyAP   94 (726)
                      +|.+.+..||..++.||..+...+.+
T Consensus       416 ~l~d~~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          416 LMKDPSVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence            45677788999999999999888766

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=84.58  E-value=7.8  Score=44.84  Aligned_cols=53  Identities=25%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             hhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcC------CC------CCCChhHHHHHHHHH
Q 004863           56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA------PD------SPYDDELMKEFFQLA  110 (726)
Q Consensus        56 SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyA------PD------APYtDdqLKDIFqLf  110 (726)
                      -+.+++..|++  .|.+.+.-||.++|.||..++....      |+      .||-..-|..+|.++
T Consensus       493 ~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll  557 (960)
T 1wa5_C          493 QLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI  557 (960)
T ss_dssp             HHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH
Confidence            35566666665  3456678899999999999988643      22      366665555555554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=83.36  E-value=10  Score=37.42  Aligned_cols=156  Identities=8%  Similarity=0.128  Sum_probs=90.3

Q ss_pred             hc-cCCCcCchhhhHHHHHHHhhhcC-CCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeecc
Q 004863           69 LL-RRSDMDVRLSVTSCISEITRITA-PDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD  146 (726)
Q Consensus        69 LL-kHKDkdVRayVAcCLaDILRIyA-PDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlD  146 (726)
                      .| +.+|..|+..++-||..|.+-.+ |.  |.-.....|+-.++..|   .|....--....+.|.+|...=.=+ +.-
T Consensus        68 ~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~llp~ll~~l---~dkk~~V~~aa~~al~~i~~~~~~~-~~~  141 (249)
T 2qk1_A           68 IIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSLVFTPLLDRT---KEKKPSVIEAIRKALLTICKYYDPL-ASS  141 (249)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHHHHHSCTT-CTT
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHcccc-ccC
Confidence            45 67788889999999999998877 66  33234455555555555   4443333345566677776631000 000


Q ss_pred             CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCC--------CHHHHHHHHHHhhccCCCCCchHHHHHH
Q 004863          147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV--------SWDLLRILLASVRKENQDVSPTSWKLGE  218 (726)
Q Consensus       147 LE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~V--------P~eVLDvIL~~ll~~~ks~~PaAykLA~  218 (726)
                      -.-++|+..||    ..+.... ..|.......|..+++.+...        +..++..|...+-..+....-+|+....
T Consensus       142 ~~l~~ll~~l~----~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~  216 (249)
T 2qk1_A          142 GRNEDMLKDIL----EHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA  216 (249)
T ss_dssp             CTTHHHHHHHH----HHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHH----HHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            00345555555    4444443 367778888888999888754        3444554444443333334445555555


Q ss_pred             HHHhhhHHH-HHHHHHHH
Q 004863          219 KVFTKCAAK-LKTNLKEA  235 (726)
Q Consensus       219 ~VI~~CadK-Lqp~I~q~  235 (726)
                      .++...+.+ |.||+..+
T Consensus       217 ~i~~~vG~~~~~p~l~~L  234 (249)
T 2qk1_A          217 ILIKIFGMNTFVKTLEHL  234 (249)
T ss_dssp             HHHHHHCSGGGHHHHHHS
T ss_pred             HHHHHhCHHHHHHHHHHH
Confidence            555555554 77777664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=82.78  E-value=11  Score=41.72  Aligned_cols=155  Identities=6%  Similarity=0.014  Sum_probs=77.8

Q ss_pred             hccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheeeccCC
Q 004863           69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE  148 (726)
Q Consensus        69 LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLmlDLE  148 (726)
                      +|.+.+..+|-.++.||..|.+-+.|+  .-...+..|+..++.   .|.|++...-....+.|.+++..-.    -++.
T Consensus       377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~il~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~  447 (861)
T 2bpt_A          377 NITADNWRNREAAVMAFGSIMDGPDKV--QRTYYVHQALPSILN---LMNDQSLQVKETTAWCIGRIADSVA----ESID  447 (861)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCHH--HHHHHHHHHHHHHHH---GGGCSCHHHHHHHHHHHHHHHHHHG----GGSC
T ss_pred             HcCCCChhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHHHHhh----hhcC
Confidence            456788889999899999887543211  001334444444444   3455421112223445555554321    1222


Q ss_pred             chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CC---CHHHHHHHHHHhhccC--CCCCchHHHHHH
Q 004863          149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DV---SWDLLRILLASVRKEN--QDVSPTSWKLGE  218 (726)
Q Consensus       149 ~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE-----~V---P~eVLDvIL~~ll~~~--ks~~PaAykLA~  218 (726)
                      ....+..++..++..+.++  ..|.......+..+++...     .+   -..++..|+..+...+  ....-.|+....
T Consensus       448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            3345666666666666553  5677666666666665432     12   1345555555444222  112223444444


Q ss_pred             HHHhhhHHHHHHHHHH
Q 004863          219 KVFTKCAAKLKTNLKE  234 (726)
Q Consensus       219 ~VI~~CadKLqp~I~q  234 (726)
                      .++..+...+.+|+.+
T Consensus       526 ~l~~~~~~~~~~~~~~  541 (861)
T 2bpt_A          526 TMVEYATDTVAETSAS  541 (861)
T ss_dssp             HHHHHCCGGGHHHHHH
T ss_pred             HHHHHcchhhHHHHHH
Confidence            5555555444444433

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=81.00  E-value=66  Score=36.89  Aligned_cols=39  Identities=15%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             CcCchhhhHHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHhcc
Q 004863           74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN  116 (726)
Q Consensus        74 DkdVRayVAcCLaDILRIyAPD-APYtDdqLKDIFqLfV~qf~~  116 (726)
                      |.+|.-.++-|+..+++.|-.+ .||    |-.++.+++..|..
T Consensus       706 ~~~v~e~~~~~~~~~~~~~~~~~~p~----l~~~~~~l~~~~~~  745 (971)
T 2x1g_F          706 EIDVLEAACSAMKHAITNLRSSFQPM----LQDLCLFIVASFQT  745 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC--CTH----HHHHHHHHHHHCC-
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhcccc----HHHHHHHHHHHHhc
Confidence            5567777777888888887666 566    77888888877764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=80.05  E-value=33  Score=38.67  Aligned_cols=65  Identities=15%  Similarity=0.122  Sum_probs=41.4

Q ss_pred             hhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhh
Q 004863           68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK  137 (726)
Q Consensus        68 ~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAe  137 (726)
                      .+|.+.+..||..++-||..|...+.+..  ....+..++..++..+.   |.+...-......|.+|++
T Consensus       407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          407 QCLSDKKALVRSITCWTLSRYAHWVVSQP--PDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTHHHHHHSC--TTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHH
Confidence            35688899999999999999988765532  23346667777766553   3322223334555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	726
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.002

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 36/263 (13%), Positives = 76/263 (28%), Gaps = 39/263 (14%)

Query: 11  EEQLKDAGN----------LLLNPPSPVDEV-----INLLDKVEHLLANVEQAPSRSMRD 55
           +++L+              +L    S  +       + L + V+    N     +  ++ 
Sbjct: 32  QQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKS 91

Query: 56  ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE 115
             L         + +  S   +R +V   I+ I            +L+ +   L  S   
Sbjct: 92  ECL---------NNIGDSSPLIRATVGILITTIASKGELQ--NWPDLLPKLCSLLDSEDY 140

Query: 116 NLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAA 175
           N           A   L  + +  + +L  D+  D+ +  M   FL+  + + P     A
Sbjct: 141 NTCEG-------AFGALQKICEDSAEILDSDVL-DRPLNIMIPKFLQFFKHSSPKIRSHA 192

Query: 176 METIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA----KLKTN 231
           +   +   I          +     ++     D  P   K   +           +L  +
Sbjct: 193 VAC-VNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 251

Query: 232 LKEAVQSRGIALDDYAEIVACIC 254
           +   V+       D  E VA   
Sbjct: 252 MHNIVEYMLQRTQDQDENVALEA 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	726
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	94.7
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	91.33
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	90.31
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	89.72
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	85.62
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	84.24

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.16  Score=51.63  Aligned_cols=177  Identities=10%  Similarity=0.117  Sum_probs=91.2

Q ss_pred             HhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCC-Ccchhh------
Q 004863           55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GRYYMK------  127 (726)
Q Consensus        55 ~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~s-sp~Y~q------  127 (726)
                      ..+..+...|+......+.+..++..+..||..+.+....+.   ...+..++..+...|..+-... ......      
T Consensus       494 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  570 (861)
T d2bpta1         494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV---AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ  570 (861)
T ss_dssp             GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG---HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence            344555666665555566777888888899999988754331   1233333444433333221111 111111      


Q ss_pred             --HHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC----CCCHHHHHHHHHH
Q 004863          128 --ALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE----DVSWDLLRILLAS  201 (726)
Q Consensus       128 --~~yLLEsLAeVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE----~VP~eVLDvIL~~  201 (726)
                        ...++..++.   ++-.+.-....++..+|..|+..........+...+..++..++.-..    ..=..++..|+..
T Consensus       571 ~l~~~~~~~l~~---~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~  647 (861)
T d2bpta1         571 ELQSNILTVLAA---VIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA  647 (861)
T ss_dssp             HHHHHHHHHHHH---HHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence              1112222222   111122224556677777777777766666555544444444443222    1123455555555


Q ss_pred             hhccCCCCCchHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004863          202 VRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQ  237 (726)
Q Consensus       202 ll~~~ks~~PaAykLA~~VI~~CadKLqp~I~q~~n  237 (726)
                      +-.........|..+...++..+...+.||+.++++
T Consensus       648 l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~  683 (861)
T d2bpta1         648 LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN  683 (861)
T ss_dssp             HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHH
Confidence            544444444456666667777777777777666554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.59  Score=49.76  Aligned_cols=182  Identities=9%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             HHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhh
Q 004863           58 LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK  137 (726)
Q Consensus        58 ~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAe  137 (726)
                      ..++..|+.  .|...+.+++..+..||.-+..-..+.. .....+..+...++..+..+.+.+.    ..+.+|+.|+.
T Consensus       518 ~~il~~l~~--~l~~~~~~~~~~~~~al~~l~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~le~l~~  590 (888)
T d1qbkb_         518 AYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHL-NKPEYIQMLMPPLIQKWNMLKDEDK----DLFPLLECLSS  590 (888)
T ss_dssp             HHHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHGGGG-CSHHHHHHHHHHHHHHHTTSCTTCT----THHHHHHHHHH
T ss_pred             HHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHhhhccc-cchHHHHHHHHHHHHHHHhcccchH----HHHHHHHHHHH
Confidence            344444432  3455556677777777776665544432 1224455566667777777765433    45577888877


Q ss_pred             hhhheeeccCCchHHHHHHHHHHHHHhhc---------------CC-chhHHHHHHHHHHHHhcccCCCC------HHHH
Q 004863          138 VRSCLLMLDLECDKLVVEMFQHFLKVIRS---------------NH-PHFVFAAMETIMTLVIDESEDVS------WDLL  195 (726)
Q Consensus       138 VKS~VLmlDLE~ddLI~eLFktFFdiVr~---------------dh-p~~V~~~M~dIMs~VIeESE~VP------~eVL  195 (726)
                      +-...-   -........+|+.++.++..               .. ...+.....++|..+++-...--      ..++
T Consensus       591 i~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~  667 (888)
T d1qbkb_         591 VATALQ---SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL  667 (888)
T ss_dssp             HHHHST---TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHH
T ss_pred             HHHHhH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            643321   11222333333333332221               11 23345555667777765333211      1355


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCch-hHHHH
Q 004863          196 RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALD-DYAEI  249 (726)
Q Consensus       196 DvIL~~ll~~~ks~~PaAykLA~~VI~~CadKLqp~I~q~~ns~G~~L~-~YseI  249 (726)
                      .+++..+..........|+.+..+++..|...+.||+..++.-+...|+ .|.++
T Consensus       668 ~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v  722 (888)
T d1qbkb_         668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV  722 (888)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHH
Confidence            6666666544444455677777889999999999999998876655554 44443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=0.52  Score=47.78  Aligned_cols=156  Identities=12%  Similarity=0.125  Sum_probs=82.1

Q ss_pred             ccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchh-hHHHHHHHhhhhhhheeeccCC
Q 004863           70 LRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM-KALSILDTVAKVRSCLLMLDLE  148 (726)
Q Consensus        70 LkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~-q~~yLLEsLAeVKS~VLmlDLE  148 (726)
                      |.+.+..||-.+|.||+.|.|+.-|+..|.     ++|..++..+   ...++.... -.+++|..+.+.-.    ..++
T Consensus       104 l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~---~s~~~~~~~~~al~~l~~i~e~~~----~~~~  171 (861)
T d2bpta1         104 LVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNT---GAEQPENVKRASLLALGYMCESAD----PQSQ  171 (861)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHT---STTSCHHHHHHHHHHHHHHHHTSS----TTSS
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHHHhh----HHHH
Confidence            467899999999999999999988875453     4555555443   222222111 12344443322100    0011


Q ss_pred             -chHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhcccCC--CCHH----HHHHHHHHhhccCCCCCchHHHHHHHH
Q 004863          149 -CDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDESED--VSWD----LLRILLASVRKENQDVSPTSWKLGEKV  220 (726)
Q Consensus       149 -~ddLI~eLFktFFdiVr-~dhp~~V~~~M~dIMs~VIeESE~--VP~e----VLDvIL~~ll~~~ks~~PaAykLA~~V  220 (726)
                       --.-+..++..+|.... .+....|...+...+..++.-...  ....    ++.+|+..+..++....-.|+.....+
T Consensus       172 ~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence             11223334444444333 334456666666666665554322  2222    344444444333333344566666777


Q ss_pred             HhhhHHHHHHHHHHHHH
Q 004863          221 FTKCAAKLKTNLKEAVQ  237 (726)
Q Consensus       221 I~~CadKLqp~I~q~~n  237 (726)
                      +..+...+.+++.+++.
T Consensus       252 ~~~~~~~~~~~l~~~l~  268 (861)
T d2bpta1         252 MSKYYTFMKPYMEQALY  268 (861)
T ss_dssp             HHHHGGGCHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77787778888766553

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=9.3  Score=40.99  Aligned_cols=173  Identities=10%  Similarity=0.069  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHH
Q 004863           34 LLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA  113 (726)
Q Consensus        34 RLkkL~~eLs~lDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLaDILRIyAPDAPYtDdqLKDIFqLfV~q  113 (726)
                      |...+.+.+..+.++...-..+....+...|+.  +|..++.+||..++.||..|..-.      ...++..|...++..
T Consensus        20 R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~~------~~~~~~~l~~~L~~~   91 (1207)
T d1u6gc_          20 RFMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV------KEYQVETIVDTLCTN   91 (1207)
T ss_dssp             HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccChHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHhC------cHhhHHHHHHHHHHH
Confidence            344555555555443321112233456666655  778899999999999999886542      245666666666555


Q ss_pred             hcccCCCCCcchhhHHHHHHHh-hhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCH
Q 004863          114 FENLSHASGRYYMKALSILDTV-AKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSW  192 (726)
Q Consensus       114 f~~LsD~ssp~Y~q~~yLLEsL-AeVKS~VLmlDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~  192 (726)
                      +.   +.+...-.-+...|.++ +.+-.......+ ...++..+...+.+.+...-...|.....+|+..++.-....-.
T Consensus        92 l~---~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~  167 (1207)
T d1u6gc_          92 ML---SDKEQLRDISSIGLKTVIGELPPASSGSAL-AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV  167 (1207)
T ss_dssp             TT---CSSSHHHHHHHHHHHHHHHHCC-----CCT-HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred             hc---CCchhhhHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhH
Confidence            42   22222222223333332 111100000000 23455555566666555555556666677888888876655433


Q ss_pred             HHHHHHHHHhhccCCCCCchHHHHHH
Q 004863          193 DLLRILLASVRKENQDVSPTSWKLGE  218 (726)
Q Consensus       193 eVLDvIL~~ll~~~ks~~PaAykLA~  218 (726)
                      .....|+..|+..-....+.-++-|.
T Consensus       168 ~~~~~il~~l~~~l~~~~~~vR~~A~  193 (1207)
T d1u6gc_         168 NFHPSILTCLLPQLTSPRLAVRKRTI  193 (1207)
T ss_dssp             TTHHHHHHHHGGGGGCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            33444555554443344444444443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.62  E-value=1.8  Score=45.99  Aligned_cols=42  Identities=17%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             CCCcCchhhhHHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHh
Q 004863           72 RSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAF  114 (726)
Q Consensus        72 HKDkdVRayVAcCLaDILRIyAPD-APYtDdqLKDIFqLfV~qf  114 (726)
                      +.|.. ...+.-||+.|.+.+... .||....+..++.++...+
T Consensus       576 ~~~~~-~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l  618 (888)
T d1qbkb_         576 DEDKD-LFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL  618 (888)
T ss_dssp             TTCTT-HHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHH-HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34443 334567999999998877 6777766666666655543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=8.2  Score=41.45  Aligned_cols=162  Identities=7%  Similarity=0.116  Sum_probs=87.4

Q ss_pred             hhhhccCCCcCchhhhHHHHHHHhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhhhhhheee
Q 004863           66 TNDLLRRSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLM  144 (726)
Q Consensus        66 s~~LLkHKDkdVRayVAcCLaDILRIyAPD-APYtDdqLKDIFqLfV~qf~~LsD~ssp~Y~q~~yLLEsLAeVKS~VLm  144 (726)
                      ...+.+..+..||..+..+|.++++-+.+. .||    ...|+..++   ..|.++...--......|..|+..=+    
T Consensus       136 ~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~----~~~il~~l~---~~l~~~~~~vR~~A~~~l~~l~~~~~----  204 (1207)
T d1u6gc_         136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF----HPSILTCLL---PQLTSPRLAVRKRTIIALGHLVMSCG----  204 (1207)
T ss_dssp             HHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT----HHHHHHHHG---GGGGCSSHHHHHHHHHHHHHHTTTC-----
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH----HHHHHHHHH---HHhCCCCHHHHHHHHHHHHHHHHHCC----
Confidence            445567788889998888999999987765 344    334444443   34555544333444555555543211    


Q ss_pred             ccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhh
Q 004863          145 LDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC  224 (726)
Q Consensus       145 lDLE~ddLI~eLFktFFdiVr~dhp~~V~~~M~dIMs~VIeESE~VP~eVLDvIL~~ll~~~ks~~PaAykLA~~VI~~C  224 (726)
                       +--...++..+++.+..-.....-.....++..|+..+=.....-=..++..|+..+...+......|...-..++..|
T Consensus       205 -~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         205 -NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             ----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             -HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence             1112345555555444321212222233344443332212222222457777777776655555555666666777788


Q ss_pred             HHHHHHHHHHHHHhc
Q 004863          225 AAKLKTNLKEAVQSR  239 (726)
Q Consensus       225 adKLqp~I~q~~ns~  239 (726)
                      ...+.+|+.+.+..+
T Consensus       284 ~~~~~~~~~~ii~~~  298 (1207)
T d1u6gc_         284 PKEVYPHVSTIINIC  298 (1207)
T ss_dssp             TCCCHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHH
Confidence            877888877777544