Citrus Sinensis ID: 004865

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720------

MLSDADVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV

cccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEcccccEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEEEEEEEccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccccEEEcccccEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEccEEEEEEEEEccHHHHHHcccccccccccccHHHHHHHcccccccccEEEEEEEcccccccccEEcccccccccccccccHHHHHccccccccccccccccccHHHHHHHHHcccccEEEEEcccEEEEHHHHHHHccccccccccccccccEEEEEEccccccccccEEEEEccEEEEcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccccccccccccccEEEcccccEEEEEEEEcccccEEEEcccccccccccEEEEEEccccEEEEccccEEEcccccccccccHHHHHHHHHHHHccEEEEEEEccEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEEcHHHHcccccccccHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEccccccccccccccEEEEEcccccEEEEEEEHHHccccccEEEEEcccccccccEEEcEccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccEEEEEEEcccccccccEEEEcccccccccccHHHHccccccccccccHcccccHHHHHHHHHHHHHHccccEEEEEccEEEcHHHHHHcccccEEEEcccccEEEEEEEEEcccccccEEEEEEEEccEEEEccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcHHHHHHccccccccHHHccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEEcccccccccccccccccHHHHHHcccccccccc

mlsdadvdnkiptqglryadasdsEYYILLTkdkkpicrtrclnppehlphhwnvndivptskiildgmshcflspapecsrdhnEWRRFLIYLQGRDMVAIAKFKFwefyilppdqtsnfTNIRVAYKMEktrnasngrghgesgrscqvvrptatkanindsptlpvniVKETVSRGNACIQARvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagpleknfvradpsYLQTLGQAHSGWIFGAIAELvdnsrdakaTKLEISIESIYFkkagkdipmlsiiddghgmthqdVVRMtyfghkqpdaddpnrigrfgvgfktgamrLGKDALVLTQTADSRSIAFLSQSLnqgkdnleipivsyyrkgqfmeldTVVQSEATAKYNLksikefspfnkyligekaglfqdkctgtQIYIWNldqwgsnyclewdnglnggssfhqgdilirsrrirsrpgqisqkvpldyslrSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYwhgrliedegnglvwvhnnkqgfldcepYARLEEWLGKVADeywdnkfdslnvvkdgalykpdqewvqcnkcrkwrmldpgfdtkslpvewfcymkpfeglcdlpeqkvdaGVVTVSakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv

mlsdadvdnkiptqglryadasdseYYILLTKDKKPICRTRCLNppehlphhwnVNDIVPTSKIILDGMSHCFLSpapecsrdHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKtrnasngrghgesgrscQVVRPTatkanindsptlpvNIVKETVSRGNACIQArvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagplEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISiesiyfkkagkdIPMLSIIDDGHGMTHQDVVRMTYFGhkqpdaddpnriGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLsqslnqgkdnlEIPIVSYYRKGQFMELDTVVQSEATAKYnlksikefspFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRsrrirsrpgqisqkvpldyslRSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVkdgalykpdqewvqCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVsakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv

MLSDADVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILirsrrirsrPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV

****************RYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYK*************************************LPVNIVKETVSRGNACIQA**************************************************FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHK*******NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRS**GQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKR*************GIA**************************************

********NKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFL************WRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAY************************************************************************************************************VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY*****************GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEDEGNGLVWVHNNKQ****CEPYARLEEWLGKVADEYWDNKFDSLNVV*DGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGL*************************************************************************

MLSDADVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTR***************QVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVG*************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRG********

*****DVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKT*********************************LPVNIVKETVSRGNAC*************************************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRI**RPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAK****************ATI************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		726	2.2.26 [Sep-21-2011]
Q8BMD7		928	MORC family CW-type zinc	yes	no	0.578	0.452	0.298	1e-40
Q14149		939	MORC family CW-type zinc	yes	no	0.524	0.405	0.300	3e-40
Q8TE76		937	MORC family CW-type zinc	no	no	0.538	0.417	0.298	4e-37
Q8C5W4		1022	MORC family CW-type zinc	no	no	0.341	0.242	0.292	2e-23
Q9Y6X9		1032	MORC family CW-type zinc	no	no	0.344	0.242	0.297	2e-23
Q69ZX6		1030	MORC family CW-type zinc	no	no	0.344	0.242	0.294	6e-23
Q9WVL5		950	MORC family CW-type zinc	no	no	0.359	0.274	0.275	2e-22
Q86VD1		984	MORC family CW-type zinc	no	no	0.347	0.256	0.265	2e-19

>sp\|Q8BMD7\|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2	Back alignment and function desciption

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 145/485 (29%), Positives = 228/485 (47%), Gaps = 65/485 (13%)

Query: 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 300
           P YLQ+   +H+   F AIAEL+DN+ D   +   + I+    KK     P L+  DDG 
Sbjct: 37  PRYLQSNSSSHTR-PFSAIAELLDNAVDPDVSARTVFIDVEEVKKK----PCLTFTDDGC 91

Query: 301 GMTHQDVVRMTYFGHKQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359
           GMT   + RM  FG          R IG FG GFK+G+MRLGKDALV T+  ++ ++  L
Sbjct: 92  GMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALVFTKNGNTLAVGLL 151

Query: 360 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 415
           SQ+  +      + +PIV + ++ + M    +V  ++    +L++I  +S FN  K L+ 
Sbjct: 152 SQTYLECIQAQAVIVPIVPFSQQNKKM----IVTEDSLP--SLEAILNYSIFNCEKDLLS 205

Query: 416 EKAGLFQDKCTGTQIYIWNLDQWGSNYC-LEWDNGLNGGSSFHQGDILIRSRRIRSRP-G 473
           +   +   K  GT++ IWN+ +       L++D          Q DIL+       +  G
Sbjct: 206 QFDAIPGKK--GTRVLIWNIRRNKDGKSELDFDTD--------QYDILVSDFDAEEKEIG 255

Query: 474 QISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGII----MG 528
            ++ ++P  +YSLR++  ++++ PRMKI+++   V ++ +AKSL    VE  I       
Sbjct: 256 GVTSELPETEYSLRAFCSILYMKPRMKIFLRQKKVTTQMIAKSL--ANVEYDIYKPTSTN 313

Query: 529 KSAHLTLG-RCQLEWEQMNCGIFLYWHGRLIE-------------DEGNGLVWVHN---- 570
           K   +T G  C+        G+ +Y + RLI+              EG G++ V      
Sbjct: 314 KQVRITFGFSCKY---HNQFGVMMYHNNRLIKAFEKAGCQLKPTCGEGVGVIGVIECNFL 370

Query: 571 ----NKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYK-PDQEWVQCNKCR 625
               NKQ F   + Y      L +  + YW  K    N        + PDQ WVQC++C 
Sbjct: 371 KPAYNKQDFEYTKEYRLTINALARKLNAYWKEKISQENFEPLPTSRRIPDQTWVQCDECL 430

Query: 626 KWRMLDPGFDTKSLPVEWFCYMKPFEGL--CDLPE--QKVDAGVVTVSAKRTGYDSRENS 681
           KWR L    D  +LP  WFCY  P      C +PE  +++D  +    AK+    + +  
Sbjct: 431 KWRRLPGMVDPSTLPARWFCYYNPHPKFKRCSVPEEQERIDEDLHRSKAKQQVEAAEKKQ 490

Query: 682 LPFEG 686
            P E 
Sbjct: 491 KPMES 495

Mus musculus (taxid: 10090)

>sp\|Q14149\|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3	Back alignment and function description

>sp\|Q8TE76\|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2	Back alignment and function description

>sp\|Q8C5W4\|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2	Back alignment and function description

>sp\|Q9Y6X9\|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2	Back alignment and function description

>sp\|Q69ZX6\|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2	Back alignment and function description

>sp\|Q9WVL5\|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1	Back alignment and function description

>sp\|Q86VD1\|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		726
255583448		754	zinc finger protein, putative [Ricinus c	0.953	0.917	0.637	0.0
359476999		760	PREDICTED: MORC family CW-type zinc fing	0.957	0.914	0.597	0.0
296088514		596	unnamed protein product [Vitis vinifera]	0.736	0.897	0.657	0.0
356495297		692	PREDICTED: MORC family CW-type zinc fing	0.761	0.799	0.585	0.0
222635901		800	hypothetical protein OsJ_22008 [Oryza sa	0.920	0.835	0.483	0.0
115468994		792	Os06g0622000 [Oryza sativa Japonica Grou	0.920	0.843	0.483	0.0
357484261		577	MORC family CW-type zinc finger protein	0.724	0.911	0.596	0.0
218198566		766	hypothetical protein OsI_23737 [Oryza sa	0.873	0.827	0.447	1e-169
413954785		785	hypothetical protein ZEAMMB73_569962 [Ze	0.880	0.814	0.469	1e-164
242096394		758	hypothetical protein SORBIDRAFT_10g02439	0.874	0.837	0.427	1e-162

>gi\|255583448\|ref\|XP_002532483.1\| zinc finger protein, putative [Ricinus communis] gi\|223527808\|gb\|EEF29907.1\| zinc finger protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/736 (63%), Positives = 550/736 (74%), Gaps = 44/736 (5%)

Query: 23  DSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKI-ILDGMSHCFLSPAPECS 81
           D + Y+ L KD KPICRT+CLNPP  +P  WN++DI+P SK+ I DG+ HCFL PA E +
Sbjct: 31  DCKLYVFLMKDGKPICRTQCLNPPAEVPQSWNIHDIIPRSKMNIYDGLPHCFLRPAAENN 90

Query: 82  RDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRG 141
           RD NEW+RFL YLQ R+ V IAKF+F  FYILPP +  NF++++VAY+ EKT N  + + 
Sbjct: 91  RDQNEWQRFLSYLQKRNSVGIAKFEFCNFYILPPAEAYNFSHVKVAYR-EKTSNKYSHQK 149

Query: 142 HGES----GRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSP 197
           H ES      +CQ V        +    T+P    +   +R N  ++A      EDN + 
Sbjct: 150 HCESVVDTTEACQFV--GCNLDPVETCGTVPSQSAERFTARKNVHMKASDQGIIEDNETS 207

Query: 198 VLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFG 257
            +KFS  +GD L  E TI    R + RAVKQ GPL +N+VRADPSYLQTLGQAHSGWIFG
Sbjct: 208 YVKFSQSIGDPLGHEPTI----RHQRRAVKQDGPLMENYVRADPSYLQTLGQAHSGWIFG 263

Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
           AIAELVDNSRDAKA++L+I IE+IY K+AGKDIPMLSIIDDGHGMTHQ+V+RMT FGHKQ
Sbjct: 264 AIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTHQEVMRMTCFGHKQ 323

Query: 318 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 377
           PD DD +RIGRFGVGFKTGAMRLG+DALVLTQT+ SRSIAFLSQSLN+G DNLEIPIVSY
Sbjct: 324 PDVDDLDRIGRFGVGFKTGAMRLGRDALVLTQTSCSRSIAFLSQSLNEGNDNLEIPIVSY 383

Query: 378 YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437
            RKGQFME+DT VQSEA AK NLK+IKE S F+KYLIGEKAGLF  K TGTQIYIWNLD+
Sbjct: 384 RRKGQFMEVDTNVQSEALAKNNLKAIKELSHFDKYLIGEKAGLFHGKHTGTQIYIWNLDE 443

Query: 438 WGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPR 497
           WGS YCL+W  GLNG SSFHQGDILIRS+R+RSRPGQ++QKVPLDYSLRSYLEVIFLVPR
Sbjct: 444 WGSGYCLDWTTGLNGWSSFHQGDILIRSKRVRSRPGQMTQKVPLDYSLRSYLEVIFLVPR 503

Query: 498 MKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 557
           M+IYVQGSLV+SRPLAKSL+ TC  T  I+GK  HLTLGRCQLEWEQ N GIFLYWHGRL
Sbjct: 504 MRIYVQGSLVKSRPLAKSLSMTCEATDNILGKRVHLTLGRCQLEWEQGNSGIFLYWHGRL 563

Query: 558 IE---------------------------DEGNGLVWVHNNKQGFLDCEPYARLEEWLGK 590
           IE                           D GNG VWVH+NKQGF DCEPY RLE WLGK
Sbjct: 564 IEAYKRVGGMAHGKVGLGVIGVIDVTDLMDNGNGRVWVHSNKQGFQDCEPYVRLENWLGK 623

Query: 591 VADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPF 650
             DEYWDN FD++ + K G LYKPDQEWVQC++CRKWR+L  G+D K+L +EWFCYM+PF
Sbjct: 624 KVDEYWDNNFDTVPLKKGGVLYKPDQEWVQCDRCRKWRILCAGYDRKNLLLEWFCYMEPF 683

Query: 651 EGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSS 710
           +G C+ PEQK   GV+TVS +R+GYD RE++   E  A I  E  S + +  ++      
Sbjct: 684 QGSCETPEQKAKHGVITVSTRRSGYD-REDA---EDDAIITSEGNSDEDVDQTKKVGKQG 739

Query: 711 PLKRIRRGLPRACKKV 726
             KRIR+GLPRACKKV
Sbjct: 740 -FKRIRKGLPRACKKV 754

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359476999\|ref\|XP_002263942.2\| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296088514\|emb\|CBI37505.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356495297\|ref\|XP_003516515.1\| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|222635901\|gb\|EEE66033.1\| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|115468994\|ref\|NP_001058096.1\| Os06g0622000 [Oryza sativa Japonica Group] gi\|51090841\|dbj\|BAD35369.1\| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi\|113596136\|dbj\|BAF20010.1\| Os06g0622000 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|357484261\|ref\|XP_003612418.1\| MORC family CW-type zinc finger protein [Medicago truncatula] gi\|355513753\|gb\|AES95376.1\| MORC family CW-type zinc finger protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|218198566\|gb\|EEC80993.1\| hypothetical protein OsI_23737 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|413954785\|gb\|AFW87434.1\| hypothetical protein ZEAMMB73_569962 [Zea mays]	Back alignment and taxonomy information

>gi\|242096394\|ref\|XP_002438687.1\| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi\|241916910\|gb\|EER90054.1\| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		726
ZFIN\|ZDB-GENE-030131-1502		1079	morc3a "MORC family CW-type zi	0.421	0.283	0.287	3.5e-39
UNIPROTKB\|F1MFY1		960	MORC3 "Uncharacterized protein	0.442	0.334	0.319	3.5e-39
ZFIN\|ZDB-GENE-040801-98		763	morc3b "MORC family CW-type zi	0.546	0.520	0.320	5e-38
UNIPROTKB\|F1SGX2		940	MORC3 "Uncharacterized protein	0.439	0.339	0.302	9.6e-37
MGI\|MGI:1922996		928	Morc4 "microrchidia 4" [Mus mu	0.539	0.422	0.313	7.8e-36
UNIPROTKB\|F1P2D9		926	MORC3 "Uncharacterized protein	0.417	0.327	0.297	3.6e-34
RGD\|1559905		928	Morc4 "MORC family CW-type zin	0.566	0.442	0.297	1.7e-33
UNIPROTKB\|Q8TE76		937	MORC4 "MORC family CW-type zin	0.524	0.406	0.302	1.3e-31
UNIPROTKB\|F1P705		898	MORC4 "Uncharacterized protein	0.522	0.422	0.298	1.5e-31
ZFIN\|ZDB-GENE-040822-40		1035	morc2 "MORC family CW-type zin	0.338	0.237	0.315	1.2e-25

ZFIN\|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 322 (118.4 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
 Identities = 95/331 (28%), Positives = 168/331 (50%)

Query:   240 DPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDG 299
             +P +L T   +H+ W F AIAEL+DN+ D   +  +  I+    +  G+D   L  +D+G
Sbjct:    15 NPKFLHTNSTSHT-WPFSAIAELIDNAYDPDVSAKQFWIDKTAIR--GEDC--LIFMDNG 69

Query:   300 HGMTHQDVVRMTYFGHKQPDADDPN-RIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAF 358
              GM +  + +M  FG    +  + +  +G +G GFK+G+MRLG+DA+V ++  +S  +  
Sbjct:    70 SGMDNDKMFKMLSFGFSDKETINGHVPVGLYGNGFKSGSMRLGRDAIVFSKNKESMCVGL 129

Query:   359 LSQSLNQG--KDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY--LI 414
             LSQ+  +    +N+ +PIVS+ R GQ M        EA    +L  I ++S F     L+
Sbjct:   130 LSQTYLEAIQAENVIVPIVSFKRVGQSM------LPEAQHAASLHDILQYSLFRTEAELL 183

Query:   415 GEKAGL---FQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILXXXXXXXXX 471
              E   +   + ++CTGT+I +WNL +  S    E+D  ++        ++          
Sbjct:   184 CELKAINAHYANECTGTRIIVWNLRKTSSGKS-EFDFDIDRYDIQIPAEVYENEKEKYKQ 242

Query:   472 PGQISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVET--GIIMG 528
             P +  Q  P  D+SLR+Y  +++L P+M+I ++G  V+++ ++KSL     +      + 
Sbjct:   243 PCRTFQSSPESDFSLRAYCSILYLKPKMQIILRGQKVKTQLISKSLAHIVKDKYKPNFLN 302

Query:   529 KSAHLTLGRCQLEWEQMNCGIFLYWHGRLIE 559
             +   +T G      E    G+ +Y   RLI+
Sbjct:   303 ERIPITFGYNTKSKEHY--GVMMYHKNRLIK 331

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB\|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1559905 Morc4 "MORC family CW-type zinc finger 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040822-40 morc2 "MORC family CW-type zinc finger 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		726
pfam13589		134	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr	4e-22
pfam07496		50	pfam07496, zf-CW, CW-type Zinc Finger	4e-11
COG0323		638	COG0323, MutL, DNA mismatch repair enzyme (predict	8e-07
TIGR00585		312	TIGR00585, mutl, DNA mismatch repair protein MutL	2e-06
PRK00095		617	PRK00095, mutL, DNA mismatch repair protein; Revie	3e-06
pfam02518		111	pfam02518, HATPase_c, Histidine kinase-, DNA gyras	2e-04
cd00075		103	cd00075, HATPase_c, Histidine kinase-like ATPases;	2e-04
PRK05218		613	PRK05218, PRK05218, heat shock protein 90; Provisi	5e-04
COG0326		623	COG0326, HtpG, Molecular chaperone, HSP90 family [	0.002

>gnl\|CDD\|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

 Score = 92.4 bits (230), Expect = 4e-22
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 256 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 315
             AIAEL+DNS DA AT ++ISI+        +    +SI D+G GM+++++      G 
Sbjct: 4   EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 316 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 374
              + +  +  +GR G+G K  ++ LG+   V ++     S   L       +   ++P 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117

Query: 375 V 375
           +
Sbjct: 118 L 118

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134

>gnl\|CDD\|219431 pfam07496, zf-CW, CW-type Zinc Finger	Back alignment and domain information

>gnl\|CDD\|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233035 TIGR00585, mutl, DNA mismatch repair protein MutL	Back alignment and domain information

>gnl\|CDD\|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

>gnl\|CDD\|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>gnl\|CDD\|235366 PRK05218, PRK05218, heat shock protein 90; Provisional	Back alignment and domain information

>gnl\|CDD\|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		726
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	99.95
COG0326		623	HtpG Molecular chaperone, HSP90 family [Posttransl	99.92
PTZ00130		814	heat shock protein 90; Provisional	99.9
PTZ00272		701	heat shock protein 83 kDa (Hsp83); Provisional	99.87
PRK05218		613	heat shock protein 90; Provisional	99.86
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	99.86
PRK14083		601	HSP90 family protein; Provisional	99.84
KOG0019		656	consensus Molecular chaperone (HSP90 family) [Post	99.82
KOG0020		785	consensus Endoplasmic reticulum glucose-regulated	99.82
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	99.67
PF07496		50	zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi	99.58
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	99.33
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	99.33
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	99.19
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	99.16
KOG1979		694	consensus DNA mismatch repair protein - MLH1 famil	98.95
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	98.82
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	98.62
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	98.61
PRK04184		535	DNA topoisomerase VI subunit B; Validated	98.59
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	98.48
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	98.34
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	98.28
PRK05644		638	gyrB DNA gyrase subunit B; Validated	98.24
smart00433		594	TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras	98.22
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	98.21
PRK14939		756	gyrB DNA gyrase subunit B; Provisional	98.2
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	98.19
KOG1977		1142	consensus DNA mismatch repair protein - MLH3 famil	97.71
TIGR01058		637	parE_Gpos DNA topoisomerase IV, B subunit, Gram-po	97.55
COG0187		635	GyrB Type IIA topoisomerase (DNA gyrase/topo II, t	97.41
COG3290		537	CitA Signal transduction histidine kinase regulati	97.3
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	97.27
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	97.17
PLN03237		1465	DNA topoisomerase 2; Provisional	97.13
PRK10604		433	sensor protein RstB; Provisional	97.06
PHA02569		602	39 DNA topoisomerase II large subunit; Provisional	97.02
PRK10364		457	sensor protein ZraS; Provisional	96.95
PRK09470		461	cpxA two-component sensor protein; Provisional	96.88
PRK09467		435	envZ osmolarity sensor protein; Provisional	96.84
COG0642		336	BaeS Signal transduction histidine kinase [Signal	96.74
PRK09303		380	adaptive-response sensory kinase; Validated	96.68
PRK11086		542	sensory histidine kinase DcuS; Provisional	96.68
PRK10755		356	sensor protein BasS/PmrB; Provisional	96.67
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	96.67
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	96.61
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	96.6
PTZ00109		903	DNA gyrase subunit b; Provisional	96.58
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	96.52
PTZ00108		1388	DNA topoisomerase 2-like protein; Provisional	96.36
PRK10549		466	signal transduction histidine-protein kinase BaeS;	96.34
PLN03128		1135	DNA topoisomerase 2; Provisional	96.25
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	96.23
PRK11100		475	sensory histidine kinase CreC; Provisional	96.2
PRK10815		485	sensor protein PhoQ; Provisional	96.16
PRK11360		607	sensory histidine kinase AtoS; Provisional	96.14
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	96.12
COG4191		603	Signal transduction histidine kinase regulating C4	96.07
PRK15347		921	two component system sensor kinase SsrA; Provision	95.72
PRK10337		449	sensor protein QseC; Provisional	95.53
PRK11091		779	aerobic respiration control sensor protein ArcB; P	95.51
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	95.3
PRK13837		828	two-component VirA-like sensor kinase; Provisional	95.25
PRK09835		482	sensor kinase CusS; Provisional	95.12
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	95.04
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	94.88
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	94.87
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	94.68
PRK10490		895	sensor protein KdpD; Provisional	94.51
PRK10841		924	hybrid sensory kinase in two-component regulatory	94.45
PRK10547		670	chemotaxis protein CheA; Provisional	94.4
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	93.82
PRK13557		540	histidine kinase; Provisional	93.73
PRK04069		161	serine-protein kinase RsbW; Provisional	93.28
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	93.26
PRK10618		894	phosphotransfer intermediate protein in two-compon	93.25
COG4585		365	Signal transduction histidine kinase [Signal trans	93.2
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	92.75
PRK09959		1197	hybrid sensory histidine kinase in two-component r	92.58
PRK03660		146	anti-sigma F factor; Provisional	92.56
COG3850		574	NarQ Signal transduction histidine kinase, nitrate	92.52
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	92.48
PRK11644		495	sensory histidine kinase UhpB; Provisional	90.87
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	90.37
COG2972		456	Predicted signal transduction protein with a C-ter	90.32
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	90.31
PF07744		119	SPOC: SPOC domain; InterPro: IPR012921 Spen (split	89.95
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	89.88
COG5002		459	VicK Signal transduction histidine kinase [Signal	89.28
COG3920		221	Signal transduction histidine kinase [Signal trans	89.09
PRK13560		807	hypothetical protein; Provisional	88.43
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	86.76
COG4192		673	Signal transduction histidine kinase regulating ph	86.71
COG5000		712	NtrY Signal transduction histidine kinase involved	85.61

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=99.95  E-value=1.1e-28  Score=284.17  Aligned_cols=400  Identities=21%  Similarity=0.227  Sum_probs=275.9

Q ss_pred             ccccCCCCcceeecCHHHHHHhcccccCCHHHHHHHHHHccccc---CCCccEEEEEeceeccCCCCcCEEEEE-----e
Q 004865          226 VKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-----D  297 (726)
Q Consensus       226 ~~~~~~~~~~~~~v~p~~L~slstsh~~~~f~AIaELIDNA~DA---~At~I~I~I~~~~~~~~~~~~~~L~I~-----D  297 (726)
                      +...+.++-.+++++|+|||+++++| +|.++|++||||||+|.   +++.+.|.-.   +...+.....++|.     |
T Consensus       119 ~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I---~p~~d~~i~a~~v~~~~~s~  194 (775)
T KOG1845|consen  119 VIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYI---NPVMDIFIRALVVQLKRISD  194 (775)
T ss_pred             ceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeee---cccccccceeEEeeccceec
Confidence            34455555699999999999999999 89999999999999997   4555443321   11122224455555     7


Q ss_pred             CCCCCCHHHHHHhhhcccCCCCCCCCCccccccceeeeeeeccCCeEEEEEeeC------CCCcceEEEeeec--CCCcc
Q 004865          298 DGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--QGKDN  369 (726)
Q Consensus       298 NG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~------g~~s~g~ls~sf~--~g~~~  369 (726)
                      ||+||.++-+..+|.+|.+.+. +....+||||+||+++.|++|.+++|++|..      ..+++|+++++|.  ++.++
T Consensus       195 ~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d  273 (775)
T KOG1845|consen  195 DGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRD  273 (775)
T ss_pred             cccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCc
Confidence            7999999999999999998875 3468999999999999999999999999943      2578999999994  57889


Q ss_pred             EEEcC----cccCCCC-cEEEEEeccchhhhhHhhHH-----HHhhhCCCcch--hHHHh-h------hc----cc-CCC
Q 004865          370 LEIPI----VSYYRKG-QFMELDTVVQSEATAKYNLK-----SIKEFSPFNKY--LIGEK-A------GL----FQ-DKC  425 (726)
Q Consensus       370 viVP~----~~~~~~G-T~I~l~lk~~~e~~~~~~L~-----~I~kySpF~s~--pI~e~-~------~~----~~-~~~  425 (726)
                      ++||+    ...+... -+..+..+...  .+..+++     .+++|+||.+.  .+.+. .      ..    +. ...
T Consensus       274 ~iv~~~~i~~~~e~~~~~~~~i~~~s~~--~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~  351 (775)
T KOG1845|consen  274 FIVPMRLIKMDYEKSDQLWQGILYKSGV--DWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNK  351 (775)
T ss_pred             eeEecchhhhhhhcccccccceeecccc--ccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccC
Confidence            99999    4444321 11111122221  2233333     49999999984  22220 0      01    22 257


Q ss_pred             CCeEEEEEcccCCC---CceeeeecCCCCCCCCCccCceeeecccccCCCCcccccCcchhhHHHHHHhhhcC--CCeEE
Q 004865          426 TGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV--PRMKI  500 (726)
Q Consensus       426 ~GT~III~NLrr~~---~~~ELDF~~d~~~~~~f~~~DI~i~~~~~~~~~~q~~~~~p~~~SLRaYlSILYL~--Prm~I  500 (726)
                      +||.+|+||+++|.   +-.|+||+.+        +++|.                ....++++.|.+|||+.  +++++
T Consensus       352 ~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~~~~~~~~  407 (775)
T KOG1845|consen  352 PGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLTRRLRFKS  407 (775)
T ss_pred             CCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchhccccchh
Confidence            99999999996653   3488999765        35542                13557999999999975  79999


Q ss_pred             EEcCeeecccccccccCccee--ecccccc-------eEEEEEEccccccccc-ccceEEEEEcCeeEe-----------
Q 004865          501 YVQGSLVRSRPLAKSLNKTCV--ETGIIMG-------KSAHLTLGRCQLEWEQ-MNCGIFLYWHGRLIE-----------  559 (726)
Q Consensus       501 ~LrGkkV~~k~ia~~L~~~~v--~k~~~~~-------k~V~it~Gf~k~e~~r-~~~G~~VYh~NRLIk-----------  559 (726)
                      +++|+++.++.+.....++..  +.+....       ..+....||.+...+. ...|++|||++|||+           
T Consensus       408 v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n  487 (775)
T KOG1845|consen  408 VLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDN  487 (775)
T ss_pred             ccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecC
Confidence            999999999998876555431  1111111       1122245666554322 357999999999998           


Q ss_pred             ---ecCCceEEec--------CCCcCcccchHHHHHHHHHHHHHHHHHhhccCCccccc---ccCCCC-----CCCceEe
Q 004865          560 ---DEGNGLVWVH--------NNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK---DGALYK-----PDQEWVQ  620 (726)
Q Consensus       560 ---~~g~GVVGV~--------HnKQdFe~t~~y~rL~~~L~~~l~eYW~~~~~~~~~~~---~~~~~~-----~~~~WVQ  620 (726)
                         +.+.++++++        |++|+|+++-.-++++.++.++++.||...++.+....   ....+.     ....=-+
T Consensus       488 ~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~~~~~~Ke~~~~~  567 (775)
T KOG1845|consen  488 ATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKERESTTTVVKEEKPEN  567 (775)
T ss_pred             CCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhhcccceeeccccccc
Confidence               4678888873        99999999999999999999999999999888876431   111100     0011111


Q ss_pred             CCcchhhccCCCCCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 004865          621 CNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG  664 (726)
Q Consensus       621 Cd~C~KWR~Lp~~~~~~~lp~~W~C~mnp---~~~sC~~pEe~~~~~  664 (726)
                      |   .+=     ......-...|+|..++   .++.|+-+-...+.+
T Consensus       568 ~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (775)
T KOG1845|consen  568 N---HLS-----SSKRTQRRKSTGRAISVAVEKFNLRSGPNGRGQID  606 (775)
T ss_pred             c---hhc-----chhccccccccccccccchhhhccccccCCcCCcc
Confidence            1   111     11123456789999998   467777666555554

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00130 heat shock protein 90; Provisional	Back alignment and domain information

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>smart00433 TOP2c TopoisomeraseII	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>PRK14939 gyrB DNA gyrase subunit B; Provisional	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive	Back alignment and domain information

>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PLN03237 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>PHA02569 39 DNA topoisomerase II large subunit; Provisional	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>PTZ00109 DNA gyrase subunit b; Provisional	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>PTZ00108 DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>PLN03128 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		726
2e61_A		69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	7e-12
2l7p_A		100	Histone-lysine N-methyltransferase ASHH2; CW-domai	1e-11
1b63_A		333	MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A	7e-07
1h7s_A		365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	8e-07
3h4l_A		367	DNA mismatch repair protein PMS1; ATP binding, DNA	9e-07
3na3_A		348	DNA mismatch repair protein MLH1; MUTL protein hom	1e-06
3ied_A		272	Heat shock protein; HSP90, chaperone, structural g	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2gqp_A		236	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	4e-05
1yc1_A		264	HSP 86, heat shock protein HSP 90-alpha; cell-cycl	6e-05
3t0h_A		228	Heat shock protein HSP 90-alpha; chaperone, ATPase	6e-05
1qy5_A		269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	7e-05
3o0i_A		256	HSP90AA1 protein; HSP90 heat-shock proteins, chape	7e-05
2wer_A		220	ATP-dependent molecular chaperone HSP82; ATPase, A	9e-05
3nmq_A		239	Heat shock protein HSP 90-beta; ATPase, chaperone-	1e-04
2o1u_A		666	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	1e-04
2ior_A		235	Chaperone protein HTPG; heat shock protein, HSP90;	1e-04
2cg9_A		677	ATP-dependent molecular chaperone HSP82; chaperone	1e-04
3peh_A		281	Endoplasmin homolog; structural genomics, structur	2e-04
2ioq_A		624	Chaperone protein HTPG; heat shock protein, HSP90;	4e-04
1y4s_A		559	Chaperone protein HTPG; HSP90, molecular chaperone	7e-04

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69	Back alignment and structure

 Score = 60.3 bits (146), Expect = 7e-12
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 617 EWVQC--NKCRKWRMLDPGFDTKSLPVEWFCYMK--PFEGLCDLPEQK 660
            WVQC    C KWR L    D   LP  W C          CD+PE+ 
Sbjct: 17  VWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEET 64

PyMOL of 2e61

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100	Back alignment and structure

>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333	Back alignment and structure

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365	Back alignment and structure

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367	Back alignment and structure

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348	Back alignment and structure

>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236	Back alignment and structure

>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264	Back alignment and structure

>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228	Back alignment and structure

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269	Back alignment and structure

>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256	Back alignment and structure

>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220	Back alignment and structure

>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239	Back alignment and structure

>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666	Back alignment and structure

>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235	Back alignment and structure

>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677	Back alignment and structure

>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281	Back alignment and structure

>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624	Back alignment and structure

>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		726
3nmq_A		239	Heat shock protein HSP 90-beta; ATPase, chaperone-	99.91
3peh_A		281	Endoplasmin homolog; structural genomics, structur	99.91
3ied_A		272	Heat shock protein; HSP90, chaperone, structural g	99.89
1qy5_A		269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	99.88
3t0h_A		228	Heat shock protein HSP 90-alpha; chaperone, ATPase	99.87
2gqp_A		236	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	99.87
3o0i_A		256	HSP90AA1 protein; HSP90 heat-shock proteins, chape	99.87
1yc1_A		264	HSP 86, heat shock protein HSP 90-alpha; cell-cycl	99.85
2wer_A		220	ATP-dependent molecular chaperone HSP82; ATPase, A	99.85
1y4s_A		559	Chaperone protein HTPG; HSP90, molecular chaperone	99.85
2cg9_A		677	ATP-dependent molecular chaperone HSP82; chaperone	99.85
2ioq_A		624	Chaperone protein HTPG; heat shock protein, HSP90;	99.83
2ior_A		235	Chaperone protein HTPG; heat shock protein, HSP90;	99.83
2o1u_A		666	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	99.82
2e61_A		69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	99.66
2l7p_A		100	Histone-lysine N-methyltransferase ASHH2; CW-domai	99.58
1b63_A		333	MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A	99.48
3h4l_A		367	DNA mismatch repair protein PMS1; ATP binding, DNA	99.4
1h7s_A		365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	99.35
3na3_A		348	DNA mismatch repair protein MLH1; MUTL protein hom	99.28
3fv5_A		201	DNA topoisomerase 4 subunit B; topoisomerase IV B	98.8
1s16_A		390	Topoisomerase IV subunit B; two-domain protein com	98.51
4duh_A		220	DNA gyrase subunit B; structure-based drug design,	98.5
4emv_A		226	DNA topoisomerase IV, B subunit; protein-inhibitor	98.47
1ei1_A		391	DNA gyrase B, GYRB; ATPase domain, dimer, isomeras	98.46
1mu5_A		471	Type II DNA topoisomerase VI subunit B; GHKL ATPas	98.44
2zbk_B		530	Type 2 DNA topoisomerase 6 subunit B; DNA binding	98.36
1kij_A		390	DNA gyrase subunit B; topoisomerase, gyrase B-coum	98.3
1zxm_A		400	TOPO IIA ATPase, DNA topoisomerase II, alpha isozy	98.28
3cwv_A		369	DNA gyrase, B subunit, truncated; structural genom	98.26
2q2e_B		621	Type 2 DNA topoisomerase 6 subunit B; DNA-binding,	98.16
3lnu_A		408	Topoisomerase IV subunit B; PARE, ATP-binding, nuc	98.14
1pvg_A		418	DNA topoisomerase II; GHKL ATPase domain; HET: DNA	97.83
3ttz_A		198	DNA gyrase subunit B; protein-inhibitor complex, A	97.76
1id0_A		152	PHOQ histidine kinase; PHOQ/PHOP, signal transduct	97.65
1bxd_A		161	ENVZ(290-450), protein (osmolarity sensor protein	97.47
2c2a_A		258	Sensor histidine kinase; phosphotransfer, PHOQ, se	97.32
2q8g_A		407	[pyruvate dehydrogenase [lipoamide]] kinase isozy;	97.3
3a0y_A		152	Sensor protein; ATP-LID, kinase, phosphoprotein, t	97.24
4ew8_A		268	Sensor protein DIVL; signal transduction, two-comp	97.22
2btz_A		394	Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo	97.19
2e0a_A		394	Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP	97.18
1th8_A		145	Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s	97.18
1ysr_A		150	Sensor-type histidine kinase PRRB; ATP-binding dom	97.18
1i58_A		189	Chemotaxis protein CHEA; beta-alpha sandwich, sign	97.16
3jz3_A		222	Sensor protein QSEC; helix-turn-helix, kinase doma	97.14
1y8o_A		419	[pyruvate dehydrogenase [lipoamide]] kinase isozy;	97.13
1gkz_A		388	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]	97.09
3d36_A		244	Sporulation kinase B; GHKL ATPase, four helix bund	97.05
1r62_A		160	Nitrogen regulation protein NR(II); PII, histidine	97.0
3sl2_A		177	Sensor histidine kinase YYCG; ATP binding, intact	96.93
1b3q_A		379	Protein (chemotaxis protein CHEA); histine kinase,	96.81
3ehh_A		218	Sensor kinase (YOCF protein); four-helix bundle, G	96.64
3a0r_A		349	Sensor protein; four helix bundle, PAS fold, kinas	96.59
3zxo_A		129	Redox sensor histidine kinase response regulator;	96.39
3ehg_A		128	Sensor kinase (YOCF protein); GHL ATPase domain, t	96.35
3zxq_A		124	Hypoxia sensor histidine kinase response regulato;	95.93
4gfh_A		1177	DNA topoisomerase 2; topoisomerase, protein-DNA co	95.71
4gut_A		776	Lysine-specific histone demethylase 1B; histone de	92.63
4fpp_A		247	Phosphotransferase; four helix bundle, bergerat fo	92.53
1we9_A		64	PHD finger family protein; structural genomics, PH	91.25
3o70_A		68	PHD finger protein 13; PHF13, structural genomics	90.71
3o7a_A		52	PHD finger protein 13 variant; PHF13, zinc finger,	89.55
2lv9_A		98	Histone-lysine N-methyltransferase MLL5; zinc fing	86.6
1wee_A		72	PHD finger family protein; structural genomics, PH	86.49
3ke6_A		399	Protein RV1364C/MT1410; anti-sigma factor, anti-si	83.68
1wep_A		79	PHF8; structural genomics, PHD domain, riken struc	83.17

>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1	Back alignment and structure

Probab=99.91  E-value=3.7e-25  Score=226.93  Aligned_cols=173  Identities=21%  Similarity=0.280  Sum_probs=133.9

Q ss_pred             cceeecC-HHHHHHhcccccCCHHHHHHHHHHcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEE
Q 004865          234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII  296 (726)
Q Consensus       234 ~~~~~v~-p~~L~slstsh~~~~f~AIaELIDNA~DA~At----------------~I~I~I~~~~~~~~~~~~~~L~I~  296 (726)
                      ...|+++ ...|+.++.+.|++...+|||||+||.||.++                .+.|.|..      +.+...|+|.
T Consensus        18 ~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~   91 (239)
T 3nmq_A           18 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLV   91 (239)
T ss_dssp             EEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred             eEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEE
Confidence            3446665 46677778777877778899999999999652                35666653      3456899999


Q ss_pred             eCCCCCCHHHHHHhhh-cccCCC--------CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCC
Q 004865          297 DDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK  367 (726)
Q Consensus       297 DNG~GMt~eeL~~~l~-fG~S~k--------~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~  367 (726)
                      |||+||++++|.++|+ ++.|.+        ...+...|||||+||||++| +|++|+|.||+.+.  .++.|.+  .+.
T Consensus        92 DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~  166 (239)
T 3nmq_A           92 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAG  166 (239)
T ss_dssp             ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CST
T ss_pred             eCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCC
Confidence            9999999999977664 444321        12357899999999999876 99999999999764  5788988  555


Q ss_pred             ccEEEcCcc--cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHHh
Q 004865          368 DNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK  417 (726)
Q Consensus       368 ~~viVP~~~--~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e~  417 (726)
                      ..++|...+  ...+||+|+||++++. ++++++.++. |.|||.|+.+||...
T Consensus       167 g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~  220 (239)
T 3nmq_A          167 GSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLY  220 (239)
T ss_dssp             TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEEC
T ss_pred             CcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEe
Confidence            678775443  2368999999999864 7888999876 999999999998753

PyMOL of 3nmq

>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*	Back alignment and structure

>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}	Back alignment and structure

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*	Back alignment and structure

>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...	Back alignment and structure

>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*	Back alignment and structure

>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*	Back alignment and structure

>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*	Back alignment and structure

>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A	Back alignment and structure

>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A	Back alignment and structure

>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}	Back alignment and structure

>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A	Back alignment and structure

>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}	Back alignment and structure

>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A	Back alignment and structure

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*	Back alignment and structure

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}	Back alignment and structure

>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*	Back alignment and structure

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*	Back alignment and structure

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}	Back alignment and structure

>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*	Back alignment and structure

>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2	Back alignment and structure

>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*	Back alignment and structure

>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*	Back alignment and structure

>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2	Back alignment and structure

>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*	Back alignment and structure

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}	Back alignment and structure

>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2	Back alignment and structure

>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*	Back alignment and structure

>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}	Back alignment and structure

>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}	Back alignment and structure

>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*	Back alignment and structure

>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*	Back alignment and structure

>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*	Back alignment and structure

>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A	Back alignment and structure

>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3	Back alignment and structure

>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*	Back alignment and structure

>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A	Back alignment and structure

>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A	Back alignment and structure

>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}	Back alignment and structure

>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*	Back alignment and structure

>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*	Back alignment and structure

>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*	Back alignment and structure

>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A	Back alignment and structure

>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*	Back alignment and structure

>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}	Back alignment and structure

>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*	Back alignment and structure

>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*	Back alignment and structure

>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}	Back alignment and structure

>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3	Back alignment and structure

>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}	Back alignment and structure

>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A	Back alignment and structure

>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*	Back alignment and structure

>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}	Back alignment and structure

>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}	Back alignment and structure

>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}	Back alignment and structure

>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}	Back alignment and structure

>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}	Back alignment and structure

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*	Back alignment and structure

>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A	Back alignment and structure

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2	Back alignment and structure

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}	Back alignment and structure

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}	Back alignment and structure

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}	Back alignment and structure

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2	Back alignment and structure

>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}	Back alignment and structure

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		726
d1h7sa2		203	d.122.1.2 (A:29-231) DNA mismatch repair protein P	6e-07
d1b63a2		218	d.122.1.2 (A:-2-216) DNA mismatch repair protein M	8e-05

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 6e-07
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
           A+ ELV+NS DA AT +++ ++       G D  ++ + D+G G+  ++   +T   H  
Sbjct: 10  AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62

Query: 318 PDADDPNRIGRFGVGFKTGAM 338
              +  +       GF+  A+
Sbjct: 63  KIQEFADLTQVETFGFRGEAL 83

PyMOL of d1h7sa2

>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		726
d1uyla_		208	HSP90 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2iwxa1		213	HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d2gqpa1		227	HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	99.91
d1b63a2		218	DNA mismatch repair protein MutL {Escherichia coli	99.47
d1h7sa2		203	DNA mismatch repair protein PMS2 {Human (Homo sapi	99.34
d2hkja3		219	Topoisomerase VI-B subunit {Archaeon Sulfolobus sh	99.12
d1bxda_		161	Histidine kinase domain of the osmosensor EnvZ {Es	97.89
d1pvga2		239	DNA topoisomerase II {Baker's yeast (Saccharomyces	97.83
d1kija2		212	DNA gyrase B {Thermus thermophilus [TaxId: 274]}	97.66
d1id0a_		146	Histidine kinase PhoQ domain {Escherichia coli [Ta	97.64
d1ysra1		148	Sensor-type histidine kinase PrrB {Mycobacterium t	97.57
d1gkza2		193	Branched-chain alpha-ketoacid dehydrogenase kinase	97.55
d1jm6a2		190	Pyruvate dehydrogenase kinase {Rat (Rattus norvegi	97.55
d2c2aa2		161	Sensor histidine kinase TM0853 {Thermotoga maritim	97.46
d1ei1a2		219	DNA gyrase B {Escherichia coli [TaxId: 562]}	97.41
d1y8oa2		125	Pyruvate dehydrogenase kinase {Human (Homo sapiens	97.37
d1s14a_		168	Topoisomerase IV subunit B {Escherichia coli [TaxI	97.21
d1ixma_		179	Sporulation response regulatory protein Spo0B {Bac	96.63
d1r62a_		156	Nitrogen regulation protein NtrB, C-terminal domai	96.51
d1th8a_		139	Anti-sigma factor spoIIab {Bacillus stearothermoph	96.31
d1we9a_		64	PHD finger protein At5g26210 {Thale cress (Arabido	83.66

>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-26  Score=226.63  Aligned_cols=166  Identities=24%  Similarity=0.302  Sum_probs=127.5

Q ss_pred             HHHHHhcccccCCHHHHHHHHHHcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 004865          242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ  305 (726)
Q Consensus       242 ~~L~slstsh~~~~f~AIaELIDNA~DA~A----------------t~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e  305 (726)
                      ..|+.+..+.|+++..+|||||+||.||..                ....|.|..      +.+..+|+|.|||+||+++
T Consensus        12 ~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~------d~~~~~l~I~DnGiGMt~~   85 (208)
T d1uyla_          12 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA   85 (208)
T ss_dssp             HHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred             HHHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEee------cCCccEEEEEcCCccccHH
Confidence            456666767777777779999999999942                334455542      4467899999999999999


Q ss_pred             HHHHhhh-cccCCC--------CCCCCCccccccceeeeeeeccCCeEEEEEeeCCCCcceEEEeeecCCCccEEEcCcc
Q 004865          306 DVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS  376 (726)
Q Consensus       306 eL~~~l~-fG~S~k--------~~~d~~~IGqFGvGFKsAsmrLg~~v~V~SK~~g~~s~g~ls~sf~~g~~~viVP~~~  376 (726)
                      ++.+.|+ +|.|.+        ...+.+.||||||||||++| ++++|.|.||+.+.....++|..  .+...+......
T Consensus        86 el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~~~~~~~~~~--~~~~~~~~~~~~  162 (208)
T d1uyla_          86 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDDEQYAWESSA--GGSFTVRTDTGE  162 (208)
T ss_dssp             HHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--TTEEEEEECCSS
T ss_pred             HHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCCcchheeeecc--CCCceEEecccc
Confidence            9999886 555431        22456899999999999999 99999999998887654555443  344455555555


Q ss_pred             cCCCCcEEEEEeccch-hhhhHhhHHH-HhhhCCCcchhHHH
Q 004865          377 YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE  416 (726)
Q Consensus       377 ~~~~GT~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e  416 (726)
                      ...+||.|+|+++++. ++++++.++. |.|||.|..+||..
T Consensus       163 ~~~~GT~I~L~lk~d~~efl~~~~i~~likkys~fi~~PI~l  204 (208)
T d1uyla_         163 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL  204 (208)
T ss_dssp             CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEE
T ss_pred             cCCCCcEEEEEeCCChHHHcCHHHHHHHHHHHhcccCcCeEe
Confidence            5678999999999875 7888888876 99999999998864

PyMOL of d1uyla_

>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	Back information, alignment and structure

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}	Back information, alignment and structure

>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}	Back information, alignment and structure

>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure