Citrus Sinensis ID: 004866
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 726 | 2.2.26 [Sep-21-2011] | |||||||
| Q59536 | 690 | Protease 2 OS=Moraxella l | N/A | no | 0.874 | 0.920 | 0.281 | 5e-63 | |
| P24555 | 686 | Protease 2 OS=Escherichia | N/A | no | 0.863 | 0.913 | 0.262 | 1e-58 | |
| Q32N48 | 707 | Prolyl endopeptidase-like | N/A | no | 0.694 | 0.712 | 0.28 | 3e-51 | |
| Q5ZKL5 | 732 | Prolyl endopeptidase-like | yes | no | 0.800 | 0.793 | 0.252 | 6e-46 | |
| Q8C167 | 725 | Prolyl endopeptidase-like | yes | no | 0.657 | 0.657 | 0.289 | 5e-45 | |
| P55656 | 705 | Uncharacterized peptidase | no | no | 0.826 | 0.851 | 0.243 | 3e-44 | |
| A5LFV8 | 727 | Prolyl endopeptidase-like | N/A | no | 0.658 | 0.657 | 0.282 | 5e-44 | |
| Q4J6C6 | 727 | Prolyl endopeptidase-like | yes | no | 0.658 | 0.657 | 0.280 | 2e-43 | |
| Q5HZA6 | 726 | Prolyl endopeptidase-like | yes | no | 0.657 | 0.657 | 0.285 | 4e-43 | |
| Q5RAK4 | 727 | Prolyl endopeptidase-like | yes | no | 0.658 | 0.657 | 0.278 | 9e-43 |
| >sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 243 bits (619), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 201/715 (28%), Positives = 331/715 (46%), Gaps = 80/715 (11%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
Y+E+E +Y +M + ++ M R+ P++ G + YY R+++ KQY +
Sbjct: 38 YLEEENRYYHEIMRPLQEQTEQIYESMVDRVPDSEMKVPVQHGQFFYYSRLDKNKQYPIY 97
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
R+ + S A D T E+ +LD N+ AE Y + ++ DH
Sbjct: 98 ARKQAA---------SRALLQDAT-----EEVVLDLNELAEE-DDYLSVTVQRMTTDHSR 142
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSK--PQAVRVSNIAWAKDGQALIYVVTDQNKRPY 193
LAY D +T+ +++LN+G L S P ++ W + G + Y D+++RP
Sbjct: 143 LAYLENRDGTDRYTIYIKDLNTGELLSDRVPNVYIYGSMEWCRCGDYIFYTTVDEHQRPC 202
Query: 194 QIYCSIIGS-TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS 252
Q++ +GS + D L+ EE ++ + I ++ F+ V++ S T+S++ +I+ P S
Sbjct: 203 QLWRHRLGSDVESDELIFEEKDDTFTLFISKSQSGKFIFVYSSSKTTSEIHMIDTDSPLS 262
Query: 253 GLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFI 312
L L+ E VEH E L + T+ A N LLRCP++ S V
Sbjct: 263 PLQLVDERRDGILYDVEHWEDDLLILTNEG-----ALNFQLLRCPLNDL--SSKVNVVEY 315
Query: 313 DDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVS 372
+++ + E F +L GR L + VVH EL P Y
Sbjct: 316 NEERYLQEMYPFRDK----LLIAGRENGLTQI--------WVVHDGELQQISWDEPLYTV 363
Query: 373 QIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASS 432
++ +YD ++ V+ IQ +++L +T
Sbjct: 364 AVLSEQSYD----------TNEVL----------------IQYESLLTPKT--------- 388
Query: 433 ATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKEN 492
T LN ++GE L+ + D S+F EQ G+ VP+T +Y
Sbjct: 389 -TFGLNLQTGEK-QCLQVAPVSGEYDRSQFRQ-EQLWATGRSGVKVPMTAVYLEGALDNG 445
Query: 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552
P +L+G+G+YG D R+ LL++G V A VRGG G+ W+ DG+ K N
Sbjct: 446 PAPLILYGYGSYGSNSDPRFDPYRLPLLEKGIVFVTAQVRGGSEMGRGWYEDGKMQNKRN 505
Query: 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612
+ DFI+ A+ LI++ K+A G SAGGLLV A N +LF+ +V VPF+D
Sbjct: 506 TFTDFIAAAKHLIDQNYTSPTKMAARGGSAGGLLVGAVANMAGELFKVIVPAVPFVDVVT 565
Query: 613 TLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ-KDVLYPAVLVTSSFNT-RFG 670
T+L +PL +++E+G P +D+ +++YSPYDN++ KD YP + +T+ N R G
Sbjct: 566 TMLDTSIPLTTLEWDEWGDPRKQEDYFYMKSYSPYDNVEAKD--YPHMYITTGINDPRVG 623
Query: 671 VWEAAKWVARVRESTIYDPKRPILLNLTTD-IVEENRYLQCKESALETAFLIKMM 724
+E AKWVAR+R + + N+ + R+ KE+A AF++ +
Sbjct: 624 YFEPAKWVARLRAVKTDNNTLVMKTNMGAGHFGKSGRFNHLKEAAESYAFILDKL 678
|
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Moraxella lacunata (taxid: 477) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 3 |
| >sp|P24555|PTRB_ECOLI Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 190/724 (26%), Positives = 332/724 (45%), Gaps = 97/724 (13%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRL-AFELSTPPLRWGPWLYYRRVEEGKQYLV 74
Y++QE Y VM+ + LQ ++ E+ R+ E+S P ++ G YR + E
Sbjct: 39 YLQQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNG--YRYRHIYEPGCEYA 96
Query: 75 LCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHK 134
+ +R + +EE+ ++ LLD N+ A Y+ ++ ++PD+
Sbjct: 97 IYQRQSAFSEEWDEWET----------------LLDANKRAAHSEFYSMGGMA-ITPDNT 139
Query: 135 FLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQ-NKRPY 193
+A + + RNL +G + + WA D YV PY
Sbjct: 140 IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWIFYYVRKHPVTLLPY 199
Query: 194 QIYCSIIGS-TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINA----A 248
Q++ IG+ +D L+ EE ++ YV++ T H+V +H S T+S+V L++A A
Sbjct: 200 QVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADA 259
Query: 249 DPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWE 308
+PF L + E ++H++ YL + + N L R + + WE
Sbjct: 260 EPFVFLPRRKDHE----YSLDHYQHRFYL-----RSNRHGKNFGLYRTRMRDE---QQWE 307
Query: 309 SVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLP 368
+ + +++E + + E R L S+ + V+ + P
Sbjct: 308 ELIPPRENIMLEGFTLFTDWLVV---EERQRGLTSLRQINRKTREVIGIA------FDDP 358
Query: 369 KYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYG 428
YV+ I P + ++ +R+ SS PD + + D+ G+ +++Q
Sbjct: 359 AYVTWIAYNPEPE--TARLRYGYSSMTTPDTLFELDMDTGERRVLKQ------------- 403
Query: 429 TASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKY 488
T + N +S ++LW + + DG+ VP++++Y K+
Sbjct: 404 TEVPGFYAANYRS-----------EHLW-------------IVARDGVEVPVSLVYHRKH 439
Query: 489 KKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548
++ NP L++G+G+YG +D + SLLDRG+V A VRGGG G++W+ DG+
Sbjct: 440 FRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFL 499
Query: 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608
KK N+ D++ L++ G SAGG+L+ AIN P+LF V+ +VPF+
Sbjct: 500 KKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFV 559
Query: 609 DATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSF-NT 667
D T+L +PL ++EE+G P D + +++YSPYDN+ YP +LVT+ ++
Sbjct: 560 DVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQA-YPHLLVTTGLHDS 618
Query: 668 RFGVWEAAKWVARVRESTIYDPKRPILLNLTTDI-----VEENRYLQCKESALETAFLIK 722
+ WE AKWVA++RE D LL L TD+ + R+ + A+E AFL+
Sbjct: 619 QVQYWEPAKWVAKLRELKTDDH----LLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVA 674
Query: 723 MMES 726
+ +
Sbjct: 675 LAQG 678
|
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Escherichia coli (strain K12) (taxid: 83333) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q32N48|PPCEL_XENLA Prolyl endopeptidase-like OS=Xenopus laevis GN=prepl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 161/575 (28%), Positives = 270/575 (46%), Gaps = 71/575 (12%)
Query: 118 FGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVR----VSNIA 173
G Y +++ VSP KF+A T+ + + T V L++G PQ V +
Sbjct: 133 LGDYEIQKI-RVSPKQKFMAVTLKGYEREESTCVVVKLDNG-----PQVTHCIENVFSCE 186
Query: 174 WAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA-LLLEESNENVYVNIRHTKDFHFVCV 232
WA D ++ + N + Q++ + + A L+ E++ +V++ T+D F+ +
Sbjct: 187 WATD--RMLLHTSQVNVQCRQVFATDFSDANGAAQLVYTENDPRFFVDLYCTRDKRFITI 244
Query: 233 HTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHY 292
++ S ++S+V LI+ PF L+ + +EH G LY+ + EA +
Sbjct: 245 NSNSKSTSEVRLIDNRCPFEPPVLVQKRIAGVIYYIEHSNGCLYML----RRHGEAAEYK 300
Query: 293 LLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGK 352
+L+ V + + WE V+ + + D++ K H L L+ L + LP +G
Sbjct: 301 ILKAAVSSGM--KHWEPVYEVQERTKLVDMEMLKDHCLLFLKNHNQLSLEVIGLP--SGA 356
Query: 353 GVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNI 412
+ +K LP + + +Y + T+ F++SSPV P +Y L
Sbjct: 357 VLQSIK--------LPAWACALELDHQAEYGAGTVGFSLSSPVHPPVHFEYSL------- 401
Query: 413 IQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPS 472
R++ +L D+++ + + +F++ + + S
Sbjct: 402 -------RKK------------------------QLSVDTNHSSDGIHQFHTL-RLEAKS 429
Query: 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVR 532
DG SVPLT++Y K+ Q P L+H +GAYG L+ ++ E + L++ GW++A+ VR
Sbjct: 430 KDGTSVPLTLLYKDSEKQMRQRPLLIHVYGAYGMDLNMSFKVEKRMLVEEGWLLAYCHVR 489
Query: 533 GGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 592
GGG G WH +G KKLN ++D SC L + H A SAGG+L A N
Sbjct: 490 GGGELGCNWHSEGVLDKKLNGLEDLGSCISHLHGLGYSQPHYSAVEAASAGGVLAGALCN 549
Query: 593 CCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA-IRNYSPYDNIQ 651
P LFRAVVLE PFLD NT++ LPL + EE+G P + +H I++Y PY NI
Sbjct: 550 SAPRLFRAVVLEAPFLDVLNTMMNVSLPLTIEEQEEWGNPLSDEKYHRYIKSYCPYQNIT 609
Query: 652 KDVLYPAVLVTSSFN-TRFGVWEAAKWVARVREST 685
YP V +T+ N R + ++ R+R++
Sbjct: 610 PQN-YPCVRITAYENDQRVPIQGLLGYITRLRKAA 643
|
Probable serine peptidase whose precise substrate specificity remains unclear. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5ZKL5|PPCEL_CHICK Prolyl endopeptidase-like OS=Gallus gallus GN=PREPL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 170/674 (25%), Positives = 303/674 (44%), Gaps = 93/674 (13%)
Query: 18 EQEE--KYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
EQE K + + + T+R++ K++ E+ ++ L +P +R+G +Y+ E G +L
Sbjct: 96 EQENWNKISRSYKAMTKRIKEKIE-ELHNKYTLHLESPRMRFGGNVYFE--ENG---YIL 149
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
C + K +L ++ E F G AY + +SPD ++
Sbjct: 150 CSK--------------------ADDDKGNVHIL-FSTEDMGFSG-AYIKRIRISPDERY 187
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195
LA ++ ++++ T + L + V + WA + ++Y + +N + +
Sbjct: 188 LATSLQSENSEEATCVIMKLGDVPFVEEV-IPNVFSFEWATND--VLYYTSQKNLKCQNV 244
Query: 196 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT 255
+ + + L+ E + +V+I TKD F+ +++ S T+S+V+LI+ PF
Sbjct: 245 FMTTFTNEKYTKLVYTEQDARFFVDIYCTKDRRFLTINSNSKTTSEVWLIDCRHPFKLPV 304
Query: 256 LIW-ECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDD 314
L+ +G+ + VEH LY+ T E + L++ V AS W+ V+ +
Sbjct: 305 LVQARTKGVIY-HVEHRNNELYILTSYG----EPAEYKLMKASV-ASTGMENWQLVYALE 358
Query: 315 QGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQI 374
+ + D++ + H + L++ L V+ + LP +
Sbjct: 359 EKTKLIDLEMFRDHCIMFLQKAGYLYL-----------NVIAFVSHSVQSIQLPTWACAF 407
Query: 375 VPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSAT 434
+ ++ SST F ++SPV P Y S+ + N+I+Q A
Sbjct: 408 ELESHPEHASSTCYFQLTSPVHPPRRFAY--SFKENNLIEQ-------------AAEEVP 452
Query: 435 ISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQN 494
I +N + + + S D VP+T+ ++ K+ ++
Sbjct: 453 IIMNCHTTRLLAK------------------------SKDETLVPITVFHNVNSKELHRK 488
Query: 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 554
P L+H +GAYG L+ ++ E L++ GW++A+ VRGGG G +WH DG + KL +
Sbjct: 489 PLLVHVYGAYGIDLNMSFKEEKLMLIEEGWILAYCHVRGGGELGLRWHKDGCQQNKLKGL 548
Query: 555 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614
D +C L E + A SAGG+L A N P+L RAVVL+ PF+D NT+
Sbjct: 549 HDLKACIMLLHELGFSQPKYTALTAVSAGGVLAGAICNSDPELIRAVVLQAPFVDVLNTM 608
Query: 615 LYPILPLIAADYEEFGYP-GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN-TRFGVW 672
+ LPL + EE+G P D I+NY PY NI K YP+V +T+ N R +
Sbjct: 609 MKTHLPLSIEEQEEWGNPLADEKCMKYIKNYCPYHNI-KPQCYPSVFITAYENDQRVPLT 667
Query: 673 EAAKWVARVRESTI 686
++V ++R++T+
Sbjct: 668 GILRYVQKLRKATL 681
|
Probable serine peptidase whose precise substrate specificity remains unclear. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8C167|PPCEL_MOUSE Prolyl endopeptidase-like OS=Mus musculus GN=Prepl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 157/543 (28%), Positives = 243/543 (44%), Gaps = 66/543 (12%)
Query: 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKD--GQALIYVVT 186
V+PD K++A + +D++ TL V L+ + + VS+ W KD + +++
Sbjct: 161 VAPDEKYVAAKIRTEDSETSTLVVVKLSDQPVM-EASFPNVSSFEWVKDEEDEDVLFYTF 219
Query: 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 246
+N R + +Y + G + E + + +V + TKD F+ ++ + T+S+V+LI+
Sbjct: 220 QRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTLNIMNKTTSEVWLID 279
Query: 247 AADPFSGLTLIWE-CEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSR 305
P+ LI + G+ + VEH + LY+ T+ E L+R DA
Sbjct: 280 GLSPWDPPVLIQKRIHGMLY-YVEHRDDELYILTNVG----EPTEFKLMRTAADAP-AIM 333
Query: 306 TWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFL 365
W+ F + V D+D K H L L+ + + L A V LK
Sbjct: 334 NWDLFFTMKRNTKVVDLDMFKDHCVLFLKHSNLLYVNVIGL---ADDSVRSLK------- 383
Query: 366 PLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRI 425
LP + + N D F + SP+ P Y + GK + E
Sbjct: 384 -LPPWACGFIMDTNSD--PKNCPFQLCSPIRPPKYYTYKFAEGK--------LFEETGHE 432
Query: 426 LYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYS 485
T +S + + AKS DG VP+T+ +
Sbjct: 433 DPITKTSRVLRIEAKS-------------------------------KDGKLVPMTVFHK 461
Query: 486 PKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545
+ + P L+H +GAYG L +R E + L+D GW++A+ VRGGG G +WH DG
Sbjct: 462 TDSEDLQRKPLLVHVYGAYGMDLKMNFRPEKRVLVDDGWILAYCHVRGGGELGLQWHADG 521
Query: 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605
R TKKLN + D ++C + L + + +SAGG+LV A N P+L RAV LE
Sbjct: 522 RLTKKLNGLADLVACIKTLHSQGFSQPSLTTLSAFSAGGVLVGALCNSKPELLRAVTLEA 581
Query: 606 PFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA--IRNYSPYDNIQKDVLYPAVLVTS 663
PFLD NT+L LPL + EE+G P D+ H I+ Y P NI K YP+V +T+
Sbjct: 582 PFLDVLNTMLDTTLPLTLEELEEWGNPSS-DEKHKNYIKRYCPCQNI-KPQHYPSVHITA 639
Query: 664 SFN 666
N
Sbjct: 640 YEN 642
|
Probable serine peptidase whose precise substrate specificity remains unclear. Does not cleave peptides after a arginine or lysine residue. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P55656|Y4SO_RHISN Uncharacterized peptidase y4sO OS=Rhizobium sp. (strain NGR234) GN=NGR_a01580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 168/689 (24%), Positives = 287/689 (41%), Gaps = 89/689 (12%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
Y+E E YA+ V S L++ L +E+ R + + + PP + G + Y+++ + G +
Sbjct: 43 YLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAW 102
Query: 76 CRRLVSLNEE---FISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPD 132
RR V+ E F + P A ++ G E S D
Sbjct: 103 WRRPVTGGPEELVFDPNTLPGAEVFYSLGAL------------------------EPSDD 138
Query: 133 HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRP 192
+++A++ N+ + L VR++ +G + + R + WA D + L + ++R
Sbjct: 139 GRYIAFSFDLIGNERYELRVRDMTNGREIWRDPS-RAGRLVWAADNRTLFFTRERADRRQ 197
Query: 193 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD--- 249
+ + T ++ EE NE + + +R + ++ + T+ + AA
Sbjct: 198 HDRVVRLDVETGRSEVVFEEVNERLALVVRRSGSGAYLFIDVIITSDMSSRIQRAAAEVW 257
Query: 250 --PFSGLTLIWE---CEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPS 304
P T +W L H I H G +LF + N L+R +D + PS
Sbjct: 258 CLPAERPTDMWRRILARELGHEIYAEHWGNEFLF----RVNDTGPNLRLVRTAIDDTSPS 313
Query: 305 RTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHF 364
R W+ V G+ +E++ + H+ ++ REG RL + G +V ++ H
Sbjct: 314 R-WQEVVPHRAGITLEEIHVLEEHVIVLEREGIQPRLVAHHRNGRVGPSIVPVE--HSCT 370
Query: 365 LPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTR 424
+ + + Y S + + I S V PD I Q ++L ++++
Sbjct: 371 VTVGLSAGGSYSCARHPYRVSALTYKICSFVTPD-------------IFIQHDLLTDKSK 417
Query: 425 ILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIY 484
+LY T S E Y + DG+ VP++I+
Sbjct: 418 VLYRTLVSGF------------------------EPELYEARVVMAKAEDGVEVPISIV- 452
Query: 485 SPKYKKENQNPGLLHGHGAYG-ELLDK--RWRSELK---SLLDRGWVVAFADVRGGGGGG 538
+ + P LL+ +G YG + L W S + SLLDRG VRGGG G
Sbjct: 453 -ARRDRGEDGPVLLNVYGCYGAQSLPAFFGWPSSMTARLSLLDRGVAFGIVHVRGGGELG 511
Query: 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598
+ WH R +K + D I+ A L+E + G SAGG V AA PDLF
Sbjct: 512 RAWHEAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTVLAAAVLRPDLF 571
Query: 599 RAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPA 658
RAV+ EVP D +T L LP + E+G P +D+ +R+Y PY N+ D YP
Sbjct: 572 RAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPP 631
Query: 659 VLVTSSF-NTRFGVWEAAKWVARVRESTI 686
+ ++ +++ ++ A++VA+ R +
Sbjct: 632 TYIDAALHDSQVLYYQPARYVAQRRSKAV 660
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|A5LFV8|PPCEL_MACFA Prolyl endopeptidase-like OS=Macaca fascicularis GN=PREPL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 153/542 (28%), Positives = 237/542 (43%), Gaps = 64/542 (11%)
Query: 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKD--GQALIYVVT 186
V+PD K++A + +D++ T + L+ + + VS+ W KD + +++
Sbjct: 163 VAPDEKYVAAKIRTEDSEASTCVIIKLSDQPVM-EASFPNVSSFEWVKDEEDEDVLFYTF 221
Query: 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 246
+N R + +Y + G + E + + +V + TKD F+ ++ + T+S+V+LI+
Sbjct: 222 QRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTINIMNKTTSEVWLID 281
Query: 247 AADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRT 306
P+ LI + VEH + LY+ T+ E L+R D
Sbjct: 282 GLSPWDPPVLIQKRIHGVLYYVEHRDDELYILTNVG----EPTEFKLMRTAADTP-AIMN 336
Query: 307 WESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLP 366
W+ F + V D+D K H L L+ + + L A V LK
Sbjct: 337 WDLFFTMKRNTKVIDLDMFKDHCVLFLKHSNLLYVNVIGL---ADDSVRSLK-------- 385
Query: 367 LPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRIL 426
LP + + N D F + SP+ Y + GK + E
Sbjct: 386 LPPWACGFIMDTNSD--PKNCPFQLCSPIRSPKYYTYKFAEGK--------LFEETGHED 435
Query: 427 YGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSP 486
T +S + L AKS DG VP+T+ +
Sbjct: 436 PITKTSRVLRLEAKS-------------------------------KDGKLVPMTVFHKT 464
Query: 487 KYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546
+ + P L+H +GAYG L +R E + L+D GW++A+ VRGGG G +WH DGR
Sbjct: 465 DSEDLQKKPLLIHVYGAYGMDLKMNFRPERRVLVDDGWILAYCHVRGGGELGLQWHADGR 524
Query: 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606
TKKLN + D +C + L + + +SAGG+L A NC P+L RAV LE P
Sbjct: 525 LTKKLNGLADLEACIKTLHGQGFSQPSLTTLTAFSAGGVLAGALCNCNPELLRAVTLEAP 584
Query: 607 FLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA--IRNYSPYDNIQKDVLYPAVLVTSS 664
FLD NT++ LPL + EE+G P D+ H I+ Y PY NI K YP+V +T+
Sbjct: 585 FLDVLNTMMDTTLPLTLEELEEWGNPSS-DEKHKNYIKRYCPYQNI-KPQHYPSVHITAY 642
Query: 665 FN 666
N
Sbjct: 643 EN 644
|
Probable serine peptidase whose precise substrate specificity remains unclear. Does not cleave peptides after a arginine or lysine residue. Macaca fascicularis (taxid: 9541) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q4J6C6|PPCEL_HUMAN Prolyl endopeptidase-like OS=Homo sapiens GN=PREPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 152/542 (28%), Positives = 237/542 (43%), Gaps = 64/542 (11%)
Query: 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKD--GQALIYVVT 186
V+PD K++A + +D++ T + L+ + + VS+ W KD + +++
Sbjct: 163 VAPDEKYVAAKIRTEDSEASTCVIIKLSDQPVM-EASFPNVSSFEWVKDEEDEDVLFYTF 221
Query: 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 246
+N R + +Y + G + E + + +V + TKD F+ ++ + T+S+V+LI+
Sbjct: 222 QRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTINIMNKTTSEVWLID 281
Query: 247 AADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRT 306
P+ LI + VEH + LY+ T+ E L+R D
Sbjct: 282 GLSPWDPPVLIQKRIHGVLYYVEHRDDELYILTNVG----EPTEFKLMRTAADTP-AIMN 336
Query: 307 WESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLP 366
W+ F + V D+D K H L L+ + + L A V LK
Sbjct: 337 WDLFFTMKRNTKVIDLDMFKDHCVLFLKHSNLLYVNVIGL---ADDSVRSLK-------- 385
Query: 367 LPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRIL 426
LP + + N D F + SP+ P Y + GK + E
Sbjct: 386 LPPWACGFIMDTNSD--PKNCPFQLCSPIRPPKYYTYKFAEGK--------LFEETGHED 435
Query: 427 YGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSP 486
T +S + L AKS DG VP+T+ +
Sbjct: 436 PITKTSRVLRLEAKS-------------------------------KDGKLVPMTVFHKT 464
Query: 487 KYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546
+ + P L+H +GAYG L +R E + L+D GW++A+ VRGGG G +WH DGR
Sbjct: 465 DSEDLQKKPLLVHVYGAYGMDLKMNFRPERRVLVDDGWILAYCHVRGGGELGLQWHADGR 524
Query: 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606
TKKLN + D +C + L + + +SAGG+L A N P+L RAV LE P
Sbjct: 525 LTKKLNGLADLEACIKTLHGQGFSQPSLTTLTAFSAGGVLAGALCNSNPELVRAVTLEAP 584
Query: 607 FLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA--IRNYSPYDNIQKDVLYPAVLVTSS 664
FLD NT++ LPL + EE+G P D+ H I+ Y PY NI K YP++ +T+
Sbjct: 585 FLDVLNTMMDTTLPLTLEELEEWGNPSS-DEKHKNYIKRYCPYQNI-KPQHYPSIHITAY 642
Query: 665 FN 666
N
Sbjct: 643 EN 644
|
Probable serine peptidase whose precise substrate specificity remains unclear. Does not cleave peptides after a arginine or lysine residue. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5HZA6|PPCEL_RAT Prolyl endopeptidase-like OS=Rattus norvegicus GN=Prepl PE=2 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 155/543 (28%), Positives = 240/543 (44%), Gaps = 66/543 (12%)
Query: 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKD--GQALIYVVT 186
V+PD K++A + +D++ T V L S + VS+ W KD + +++
Sbjct: 162 VAPDEKYVAAKIRAEDSETSTCIVVKL-SDQPAMEASFPNVSSFEWVKDEEDEDVLFYTF 220
Query: 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 246
+N R + +Y + G + E + + +V + TKD F+ ++ + T+S+V+LI+
Sbjct: 221 QRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTLNIMNKTTSEVWLID 280
Query: 247 AADPFSGLTLIWE-CEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSR 305
P+ LI + G+ + VEH + LY+ T+ E L+R DA
Sbjct: 281 GLSPWDPPMLIQKRIHGMLY-YVEHRDDELYILTNVG----EPTEFKLMRTAADAP-AIM 334
Query: 306 TWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFL 365
W+ F + V D+D K H L L+ + + L A V LK
Sbjct: 335 NWDLFFTMKRNTKVVDLDMFKDHCVLFLKHSNLLYVNVIGL---ADDSVRSLK------- 384
Query: 366 PLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRI 425
LP + + N D F + SP+ P Y + GK + E
Sbjct: 385 -LPPWACGFIMDTNSD--PKNCPFQLCSPIRPPKYYTYKFAEGK--------LFEETGHE 433
Query: 426 LYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYS 485
T +S + + AKS DG VP+T+ +
Sbjct: 434 DPITKTSRVLRIEAKS-------------------------------KDGKLVPMTVFHK 462
Query: 486 PKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545
+ + P L+H +GAYG L +R E + L+D GW++A+ VRGGG G +WH DG
Sbjct: 463 TDSEDLQRKPLLVHVYGAYGMDLKMNFRPERRVLVDDGWILAYCHVRGGGELGLQWHADG 522
Query: 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605
R TKKLN + D +C + L + + +SAGG+LV A N P+L RAV LE
Sbjct: 523 RLTKKLNGLADLEACIKTLHSQGFSQPSLTTLSAFSAGGVLVGALCNSKPELLRAVTLEA 582
Query: 606 PFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA--IRNYSPYDNIQKDVLYPAVLVTS 663
PFLD NT++ LPL + EE+G P D+ H I+ Y P N+ K YP+V +T+
Sbjct: 583 PFLDVLNTMMDTTLPLTLEELEEWGNPSS-DEKHKNYIKRYCPCQNM-KPQHYPSVHITA 640
Query: 664 SFN 666
N
Sbjct: 641 YEN 643
|
Probable serine peptidase whose precise substrate specificity remains unclear. Does not cleave peptides after a arginine or lysine residue. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5RAK4|PPCEL_PONAB Prolyl endopeptidase-like OS=Pongo abelii GN=PREPL PE=2 SV=2 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 151/542 (27%), Positives = 237/542 (43%), Gaps = 64/542 (11%)
Query: 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKD--GQALIYVVT 186
V+PD K++A + +D++ T + L+ + + VS+ W KD + +++
Sbjct: 163 VAPDEKYVAAKIRTEDSEASTCVIIKLSDQPVM-EASFPNVSSFEWVKDEEDEDVLFYTF 221
Query: 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 246
+N R + +Y + G + E + + +V + TKD F+ ++ + T+S+V+LI+
Sbjct: 222 QRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTINIMNKTTSEVWLID 281
Query: 247 AADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRT 306
P+ LI + VEH + LY+ T+ E L+R D
Sbjct: 282 GLSPWDPPVLIQKRIHGVLYYVEHRDDELYILTNVG----EPTEFKLMRTAADTP-AIMN 336
Query: 307 WESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLP 366
W+ F + V D+D K H L L+ + + L A V LK
Sbjct: 337 WDLFFTMKRNTKVIDLDMFKDHCVLFLKHSNLLYVNVIGL---ADDSVRSLK-------- 385
Query: 367 LPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRIL 426
LP + + N D F + SP+ P Y + GK + E
Sbjct: 386 LPPWACGFIMDTNSD--PKNCPFQLCSPIRPPKYYTYKFAEGK--------LFEETGHED 435
Query: 427 YGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSP 486
T +S + L AKS DG VP+T+ +
Sbjct: 436 PITKTSRVLRLEAKS-------------------------------KDGKLVPMTVFHKT 464
Query: 487 KYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546
+ + P L+ +GAYG L +R E + L+D GW++A+ VRGGG G +WH DGR
Sbjct: 465 DSEDLQKKPLLVQVYGAYGIDLKMNFRPERRVLVDDGWILAYCHVRGGGELGLQWHADGR 524
Query: 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606
TKKLN + D +C + L + + +SAGG+L A N P+L RAV LE P
Sbjct: 525 LTKKLNGLADLEACIKTLHGQGFSQPSLTTLTAFSAGGVLAGALCNSNPELLRAVTLEAP 584
Query: 607 FLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA--IRNYSPYDNIQKDVLYPAVLVTSS 664
FLD NT++ LPL + EE+G P D+ H I++Y PY NI K YP++ +T+
Sbjct: 585 FLDVLNTMMDTTLPLTLEELEEWGNPSS-DEKHKNYIKHYCPYQNI-KPQHYPSIHITAY 642
Query: 665 FN 666
N
Sbjct: 643 EN 644
|
Probable serine peptidase whose precise substrate specificity remains unclear. Does not cleave peptides after a arginine or lysine residue. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 726 | ||||||
| 255562711 | 788 | oligopeptidase B, putative [Ricinus comm | 0.998 | 0.920 | 0.806 | 0.0 | |
| 356502217 | 775 | PREDICTED: protease 2-like [Glycine max] | 0.995 | 0.932 | 0.760 | 0.0 | |
| 356561281 | 775 | PREDICTED: protease 2-like [Glycine max] | 0.995 | 0.932 | 0.757 | 0.0 | |
| 297794309 | 792 | predicted protein [Arabidopsis lyrata su | 0.998 | 0.915 | 0.756 | 0.0 | |
| 15240153 | 792 | Prolyl oligopeptidase family protein [Ar | 0.998 | 0.915 | 0.753 | 0.0 | |
| 449520835 | 790 | PREDICTED: LOW QUALITY PROTEIN: protease | 0.998 | 0.917 | 0.759 | 0.0 | |
| 449442973 | 790 | PREDICTED: protease 2-like [Cucumis sati | 0.998 | 0.917 | 0.759 | 0.0 | |
| 224096860 | 730 | predicted protein [Populus trichocarpa] | 0.911 | 0.906 | 0.731 | 0.0 | |
| 297745689 | 744 | unnamed protein product [Vitis vinifera] | 0.935 | 0.912 | 0.699 | 0.0 | |
| 51535946 | 796 | putative oligopeptidase [Oryza sativa Ja | 0.991 | 0.904 | 0.665 | 0.0 |
| >gi|255562711|ref|XP_002522361.1| oligopeptidase B, putative [Ricinus communis] gi|223538439|gb|EEF40045.1| oligopeptidase B, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/729 (80%), Positives = 655/729 (89%), Gaps = 4/729 (0%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MSSLNDKVAMRHMD+YMEQEEKY EAVMSDTE+LQSKLQSEMASRL F+LST P+RWGPW
Sbjct: 61 MSSLNDKVAMRHMDVYMEQEEKYTEAVMSDTEKLQSKLQSEMASRLQFDLSTLPVRWGPW 120
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRRVEEGKQY VLCRRL+SLNEEFIS+K PA+GFDFTSGKKIEQKLLDYNQEAERFGG
Sbjct: 121 LYYRRVEEGKQYPVLCRRLLSLNEEFISNKLPASGFDFTSGKKIEQKLLDYNQEAERFGG 180
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEELSEVSPDHKFLAYTMYDK+ND+F LSVRNLNSGALCSKPQA RVSN+AWAKDGQA
Sbjct: 181 YAYEELSEVSPDHKFLAYTMYDKENDWFRLSVRNLNSGALCSKPQADRVSNLAWAKDGQA 240
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTDQ KRP ++YCS+IGSTDED LLL+E N+NV++NIRHTKDFHFV V+TFST SS
Sbjct: 241 LLYVVTDQYKRPCRLYCSMIGSTDEDVLLLDEPNDNVFINIRHTKDFHFVTVNTFST-SS 299
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFL+NAADP SG+TL+WECE AHCI+EHH+G+LYLFTDAAKE + AD+HYLL PVDA
Sbjct: 300 KVFLMNAADPLSGMTLVWECEAQAHCIIEHHQGYLYLFTDAAKESKLADHHYLLCSPVDA 359
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
S R WESVF DDQ L++ DVDFC TH+ LI+REG ++RLCSV LPLPAG +L+EL
Sbjct: 360 SSSPRLWESVFKDDQDLIIVDVDFCDTHLVLIVREGWSFRLCSVPLPLPAGLKGANLEEL 419
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
P FLPLPK+VSQI PG NYDY SSTMRF ISS VMPDAVVDYDLS GKWNIIQQQNML
Sbjct: 420 KPRFLPLPKHVSQISPGANYDYNSSTMRFTISSLVMPDAVVDYDLSNGKWNIIQQQNMLY 479
Query: 421 ERTRILYGTASSATISLNAK---SGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
ERT++LYGTASSA+I+ + + + +E+KS +NLWNDLSEFY+CE Y V S+DG+S
Sbjct: 480 ERTKVLYGTASSASITSKSSDYLNPDYSSEVKSGDENLWNDLSEFYACEHYHVSSYDGVS 539
Query: 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537
VPLT+I+S K K NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWV+A+ADVRGGGG
Sbjct: 540 VPLTVIFSHKNKSANQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVIAYADVRGGGGQ 599
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
GK WHH+GRRTKKLNSIKD+ISCA+FL+E EIV+E KLAGWGYSAGGLLVA+AINCCPDL
Sbjct: 600 GKNWHHNGRRTKKLNSIKDYISCAKFLVENEIVQEKKLAGWGYSAGGLLVASAINCCPDL 659
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP 657
FRAVVL+VPFLD TNTLLYPILPL AAD+EEFGYPG+ DDFHAIR YSPYDNIQKDVLYP
Sbjct: 660 FRAVVLKVPFLDPTNTLLYPILPLTAADFEEFGYPGEADDFHAIREYSPYDNIQKDVLYP 719
Query: 658 AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALET 717
AVL+TSSFNTRFGVWEAAKWVARVRE I DP RPILLNLTT+IVEENRYLQCKESA+ET
Sbjct: 720 AVLITSSFNTRFGVWEAAKWVARVRERAINDPSRPILLNLTTEIVEENRYLQCKESAMET 779
Query: 718 AFLIKMMES 726
AFLI+MME+
Sbjct: 780 AFLIRMMET 788
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502217|ref|XP_003519916.1| PREDICTED: protease 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/728 (76%), Positives = 632/728 (86%), Gaps = 5/728 (0%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MS LNDKVAMRHMD+ +EQEEKYAEAVMSD++ L +KL EMASR+ F+LSTPPLRWGPW
Sbjct: 49 MSQLNDKVAMRHMDVCVEQEEKYAEAVMSDSDNLLNKLHFEMASRMPFDLSTPPLRWGPW 108
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRR EE K Y VLCRRL SL E+FISHK P AGFDFT+GK IEQKLLDYNQEA+RFGG
Sbjct: 109 LYYRRAEEAKPYPVLCRRLASLYEDFISHKYPPAGFDFTTGKTIEQKLLDYNQEAQRFGG 168
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEELSEVSP+H+FLAYTMYDK+NDYF LSVRNLNSG+LCSKPQA RVSN+AWAKDGQA
Sbjct: 169 YAYEELSEVSPNHQFLAYTMYDKENDYFKLSVRNLNSGSLCSKPQADRVSNLAWAKDGQA 228
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTD+ RPY+IY S+IGSTDED LLLEES+E+V+VNIRHTKDF FV V+TFSTTSS
Sbjct: 229 LLYVVTDKKMRPYRIYYSLIGSTDEDVLLLEESDESVHVNIRHTKDFLFVTVNTFSTTSS 288
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLINAAD SGL L+WEC+ LAHC +EHH G+LYLFTDA K G+ D HYLL PVD
Sbjct: 289 KVFLINAADLLSGLKLVWECDALAHCTIEHHRGYLYLFTDAPKGGRSVDCHYLLFSPVDD 348
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
+R WE V +DD GL++ED+DF ++ALI+REGR +LCSV LPLP GKG V L++L
Sbjct: 349 PSSTRKWEEVLVDDPGLIIEDIDFSDKYLALIVREGRKVQLCSVGLPLPFGKGAVKLRKL 408
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
+LP+P++V QI PGPNYD++SS MRF ISSPVMPDAVVDYDL+ GKWNIIQQQN+L
Sbjct: 409 DLQYLPIPRHVCQITPGPNYDFFSSVMRFIISSPVMPDAVVDYDLATGKWNIIQQQNVLH 468
Query: 421 ERTRILYGTASSATISL---NAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
+RTRILYG +SA+IS+ N+K VN + S+ D+LWNDLSEFY+CEQY+VPS DG+
Sbjct: 469 DRTRILYGK-NSASISMESSNSKHSNPVN-VNSEDDHLWNDLSEFYACEQYEVPSFDGVL 526
Query: 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537
+PLTI+++ K E + PG+LHGHGAYGELLDKRWRSELKSLLDRGWVVA+ADVRGGGG
Sbjct: 527 IPLTIVFARNNKIEAKKPGILHGHGAYGELLDKRWRSELKSLLDRGWVVAYADVRGGGGF 586
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
GKKWH+DGRRTKK NSI D+ISCA+FLIEK+IV E+KLAGWGYSAGGLLVA+AIN PDL
Sbjct: 587 GKKWHNDGRRTKKHNSINDYISCAKFLIEKDIVHENKLAGWGYSAGGLLVASAINRSPDL 646
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP 657
FRA VL+VPFLDATNTLLYPILPLIAADYEEFGYPGD+DDF AIR YSPYDNI+KDVLYP
Sbjct: 647 FRAAVLKVPFLDATNTLLYPILPLIAADYEEFGYPGDLDDFLAIREYSPYDNIRKDVLYP 706
Query: 658 AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALET 717
AVLVTSSFNTRFGVWEAAKWVARVR+ ++YDPKRPILLNLTTD+VEENRYLQ KESALE
Sbjct: 707 AVLVTSSFNTRFGVWEAAKWVARVRDLSVYDPKRPILLNLTTDLVEENRYLQSKESALEA 766
Query: 718 AFLIKMME 725
FLIKMME
Sbjct: 767 TFLIKMME 774
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561281|ref|XP_003548911.1| PREDICTED: protease 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/729 (75%), Positives = 631/729 (86%), Gaps = 6/729 (0%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MS LNDKVAMRHMD+ MEQEEKY EAVMSD++ L +KL EMASR+ F+LSTPPLRWGPW
Sbjct: 50 MSQLNDKVAMRHMDVCMEQEEKYTEAVMSDSDNLLNKLHFEMASRMPFDLSTPPLRWGPW 109
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRR EE K Y VLCRRL +L ++FISHK P AGFDFT+GK IEQKL+DYNQEAERFGG
Sbjct: 110 LYYRRAEEAKPYPVLCRRLAALYDDFISHKYPPAGFDFTTGKTIEQKLIDYNQEAERFGG 169
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEELSEVSP+H+FLAYTMYDK+NDYF LSVRNLNSG+LCSKPQA RVSN+AWAKDGQA
Sbjct: 170 YAYEELSEVSPNHQFLAYTMYDKENDYFKLSVRNLNSGSLCSKPQADRVSNLAWAKDGQA 229
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTD+ RPY+IY S+IGSTDED LLLEES+E+V+VNIRHTKDF FV V+TFSTTSS
Sbjct: 230 LLYVVTDKKMRPYRIYYSLIGSTDEDVLLLEESDESVHVNIRHTKDFQFVTVNTFSTTSS 289
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLINAADP SGL L+WEC+ LAHCI+EHH G+LYLFTDA K G+ + HYLL PVD
Sbjct: 290 KVFLINAADPLSGLKLVWECDVLAHCIIEHHRGYLYLFTDAPKGGRSVECHYLLCSPVDL 349
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
S +R WE V +DD GL++ED+DF ++ALI+REGR +LCSV LPLP GKG V L++L
Sbjct: 350 S-STRKWEEVLVDDPGLIIEDIDFSDKYLALIVREGRKVQLCSVGLPLPFGKGAVKLRKL 408
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
+L +PK+V QI+PGPNYD+YSS MRF ISSPVMPDAVVDYDL+ GKWNIIQQQNML
Sbjct: 409 DLQYLSIPKHVCQIMPGPNYDFYSSVMRFIISSPVMPDAVVDYDLATGKWNIIQQQNMLH 468
Query: 421 ERTRILYGTASSATISL---NAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
+RTRILYG +SA+IS+ N+K V+ + + D+LWNDLSEFY+CEQY+VPS DG+
Sbjct: 469 DRTRILYGK-NSASISMEPSNSKHSSPVS-VNLEDDHLWNDLSEFYACEQYEVPSFDGVL 526
Query: 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537
+PLTI+++ K E + PG+LHGHGAYGELLDKRW SELKSLLDRGWVVA+ADVRGGGG
Sbjct: 527 IPLTIVFARNNKTEAKKPGILHGHGAYGELLDKRWHSELKSLLDRGWVVAYADVRGGGGF 586
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
GKKWH+DGRR KK NSI D+ISCA+FLIEK+IV E+KLAGWGYSAGGLLVA+AIN PDL
Sbjct: 587 GKKWHNDGRRAKKHNSINDYISCAKFLIEKDIVHENKLAGWGYSAGGLLVASAINRSPDL 646
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP 657
FRA VL+VPFLDATNTLLYPILPLIAADYEEFGYPGD++DF AIR YSPYDNIQKD LYP
Sbjct: 647 FRAAVLKVPFLDATNTLLYPILPLIAADYEEFGYPGDLNDFLAIREYSPYDNIQKDALYP 706
Query: 658 AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALET 717
AVLVTSSFNTRFGVWEAAKWVARVR+ +IYDPKRPILLNLTTD+VEENRYLQ KESALE
Sbjct: 707 AVLVTSSFNTRFGVWEAAKWVARVRDLSIYDPKRPILLNLTTDLVEENRYLQSKESALEA 766
Query: 718 AFLIKMMES 726
FL+KMMES
Sbjct: 767 TFLMKMMES 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297794309|ref|XP_002865039.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310874|gb|EFH41298.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/731 (75%), Positives = 633/731 (86%), Gaps = 6/731 (0%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MS L DKVAMRHMD+YMEQEEKY EAV++DT+R+Q+KLQSEMASRL+FELSTPPLRWGPW
Sbjct: 63 MSKLEDKVAMRHMDIYMEQEEKYTEAVLADTDRIQTKLQSEMASRLSFELSTPPLRWGPW 122
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRRVEEGKQY VLCRRL SL+EEFISHKSPAAGFDFTSGK+IEQKLLDYNQEAERFGG
Sbjct: 123 LYYRRVEEGKQYPVLCRRLASLHEEFISHKSPAAGFDFTSGKRIEQKLLDYNQEAERFGG 182
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEE+SE+SPDHKFLAYTMYDKDNDYF L VRNLNSGALCSKP A RVSNIAWAK+GQA
Sbjct: 183 YAYEEMSEISPDHKFLAYTMYDKDNDYFKLCVRNLNSGALCSKPHADRVSNIAWAKNGQA 242
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTDQ KRP++IYCS+IGSTDED LL EE NV+VNIRHTKDFHFV V+TFSTT S
Sbjct: 243 LLYVVTDQKKRPFRIYCSMIGSTDEDVLLHEELEGNVHVNIRHTKDFHFVTVNTFSTTFS 302
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLINAADPFSGL L+WE AHCI+EHH+GFLYLFTDA+ +G D+HYLLR PV
Sbjct: 303 KVFLINAADPFSGLALVWEHNAPAHCIIEHHQGFLYLFTDASNDGGTLDHHYLLRSPVHF 362
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
S R WE+VFID+ L++EDVDFCKTH++LI++E +++++C V LPL + VHL+++
Sbjct: 363 SSSQRIWETVFIDNPELIIEDVDFCKTHLSLIVKEMQSFKICVVDLPLKTERVPVHLRDI 422
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
P +LPLPK+VSQI PG NYD+ S TMRF ISS VMPDAVVDYDL GKWNI+QQQNML
Sbjct: 423 KPRYLPLPKHVSQIFPGTNYDFNSPTMRFTISSLVMPDAVVDYDLLNGKWNIVQQQNMLH 482
Query: 421 ERTRILYGTASSATISLNAKSGE-----SVNELKSDSDNLWNDLSEFYSCEQYDVPSHDG 475
ERTR+LYGTA+S T S N SG + +++DNLWNDL+EFY+C+ ++V SHDG
Sbjct: 483 ERTRVLYGTANS-TESPNIPSGTRTVSFDTEDTTANNDNLWNDLAEFYACDYHEVSSHDG 541
Query: 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG 535
VPL+I+YS K+EN+ PGLLH HGAYGE+LDKRWRSELKSLLDRGWV+A+ADVRGGG
Sbjct: 542 AMVPLSIVYSRAQKEENRKPGLLHVHGAYGEMLDKRWRSELKSLLDRGWVLAYADVRGGG 601
Query: 536 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP 595
G GKKWH DGR KKLNSIKD+I CA+FL+E IV+E+KLAGWGYSAGGL+VA+AIN CP
Sbjct: 602 GKGKKWHQDGRGAKKLNSIKDYIQCAKFLVENNIVEENKLAGWGYSAGGLIVASAINHCP 661
Query: 596 DLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVL 655
+LF+A VL+VPFLD T+TL+YPILPL A DYEEFGYPGDIDDFHAIR YSPYDNI KDVL
Sbjct: 662 ELFQAAVLKVPFLDPTHTLIYPILPLTAEDYEEFGYPGDIDDFHAIREYSPYDNIPKDVL 721
Query: 656 YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESAL 715
YPAVLVTSSFNTRFGVWEAAKWVARVR++T +DP RP+LLNLTTDIVEENR+LQ KESAL
Sbjct: 722 YPAVLVTSSFNTRFGVWEAAKWVARVRDNTFHDPTRPVLLNLTTDIVEENRFLQTKESAL 781
Query: 716 ETAFLIKMMES 726
E AFLI MMES
Sbjct: 782 EIAFLINMMES 792
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240153|ref|NP_201497.1| Prolyl oligopeptidase family protein [Arabidopsis thaliana] gi|9758541|dbj|BAB08935.1| protease-like [Arabidopsis thaliana] gi|332010901|gb|AED98284.1| Prolyl oligopeptidase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1143 bits (2956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/731 (75%), Positives = 631/731 (86%), Gaps = 6/731 (0%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MS L DKVAMRHMD+YMEQEEKY EAV++DT+R+Q+KLQSEMASRL+FELSTPPLRWGPW
Sbjct: 63 MSKLEDKVAMRHMDIYMEQEEKYTEAVLADTDRIQTKLQSEMASRLSFELSTPPLRWGPW 122
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRRVEEGKQY VLCRRL SL+EEFISHKSPAAGFD+TSGK+IEQKLLDYNQEAERFGG
Sbjct: 123 LYYRRVEEGKQYPVLCRRLASLHEEFISHKSPAAGFDYTSGKRIEQKLLDYNQEAERFGG 182
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEE+SE+SPDHKFLAYTMYDKDNDYF L VRNLNSGALCSKP A RVSNIAWAK+GQA
Sbjct: 183 YAYEEMSEISPDHKFLAYTMYDKDNDYFKLCVRNLNSGALCSKPHADRVSNIAWAKNGQA 242
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTDQ KRP +IYCS IGSTDED LL EE NV+VNIRHTKDFHFV V+TFSTT S
Sbjct: 243 LLYVVTDQKKRPCRIYCSTIGSTDEDVLLHEEFEGNVHVNIRHTKDFHFVTVNTFSTTFS 302
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLINAADPFSGL L+WE AHCI+EHH+GFLYLFT+A+ +G D+HYLLR PV
Sbjct: 303 KVFLINAADPFSGLALVWEHNAPAHCIIEHHQGFLYLFTNASNDGGTVDHHYLLRSPVHF 362
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
S R WE+VFI+D L++EDVDFCK H++LI++E +++++C V LPL + VHL+++
Sbjct: 363 SSCQRIWETVFINDPELIIEDVDFCKKHLSLIVKEMQSFKICVVDLPLKTKRVPVHLRDI 422
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
P +LPLPK+VSQI PG NYD+ S TMRF ISS VMPDAVVDYDL GKWNI+QQQNML
Sbjct: 423 KPRYLPLPKHVSQIFPGTNYDFNSPTMRFTISSLVMPDAVVDYDLLNGKWNIVQQQNMLH 482
Query: 421 ERTRILYGTASSATISLNAKSGE-----SVNELKSDSDNLWNDLSEFYSCEQYDVPSHDG 475
ERTR+LYGTA+S T S N SG + +++DNLWNDL+EFY+C+ ++V SHDG
Sbjct: 483 ERTRVLYGTANS-TESPNIPSGTRTVSFDTEDTTAENDNLWNDLTEFYACDYHEVSSHDG 541
Query: 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG 535
VPL+I+YS K+ENQ PGLLH HGAYGE+LDKRWRSELKSLLDRGWV+A+ADVRGGG
Sbjct: 542 AMVPLSIVYSRAQKEENQKPGLLHVHGAYGEMLDKRWRSELKSLLDRGWVLAYADVRGGG 601
Query: 536 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP 595
G GKKWH DGR KKLNSIKD+I CA++L+E IV+E+KLAGWGYSAGGL+VA+AIN CP
Sbjct: 602 GKGKKWHQDGRGAKKLNSIKDYIQCAKYLVENNIVEENKLAGWGYSAGGLVVASAINHCP 661
Query: 596 DLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVL 655
DLF+A VL+VPFLD T+TL+YPILPL A DYEEFGYPGDI+DFHAIR YSPYDNI KDVL
Sbjct: 662 DLFQAAVLKVPFLDPTHTLIYPILPLTAEDYEEFGYPGDINDFHAIREYSPYDNIPKDVL 721
Query: 656 YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESAL 715
YPAVLVTSSFNTRFGVWEAAKWVARVR++T DP+RP+LLNLTTDIVEENR+LQ KESAL
Sbjct: 722 YPAVLVTSSFNTRFGVWEAAKWVARVRDNTFNDPERPVLLNLTTDIVEENRFLQTKESAL 781
Query: 716 ETAFLIKMMES 726
E AFLIKMMES
Sbjct: 782 EIAFLIKMMES 792
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520835|ref|XP_004167438.1| PREDICTED: LOW QUALITY PROTEIN: protease 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/729 (75%), Positives = 625/729 (85%), Gaps = 4/729 (0%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MSSLNDKVAMRHMD+YMEQEEKY EAVM TERLQSKLQSEMASRLAFELSTPPLRWGPW
Sbjct: 63 MSSLNDKVAMRHMDVYMEQEEKYTEAVMGGTERLQSKLQSEMASRLAFELSTPPLRWGPW 122
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRRVEEGKQY VLCRRL SL+EEFIS+KSP+AGFD+ SG+KIEQKL+DYNQEAERFGG
Sbjct: 123 LYYRRVEEGKQYPVLCRRLASLHEEFISNKSPSAGFDYVSGQKIEQKLIDYNQEAERFGG 182
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEELSEVSPDH+FLAYTMYDKDNDYF LSV+NL+SG+LCSKPQ RVSN+AWAK GQ+
Sbjct: 183 YAYEELSEVSPDHRFLAYTMYDKDNDYFRLSVKNLSSGSLCSKPQVDRVSNLAWAKGGQS 242
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTDQNKRP ++YCS IGS DED LLLEE +++V+V IRHTKDF FV V+ FS TSS
Sbjct: 243 LLYVVTDQNKRPCRLYCSTIGSIDEDTLLLEEKDDDVHVYIRHTKDFRFVTVNRFSPTSS 302
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLI+AADP SG+ LIWECE LAHCIVEHH G LYLFTDA+K + D+HYLLR P+
Sbjct: 303 KVFLIDAADPLSGMKLIWECEELAHCIVEHHLGDLYLFTDASKGHERVDSHYLLRSPLKV 362
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP-AGKGVVHLKE 359
RTWE VF+DD V+ DVDFC TH+ LILREGR + LC+V LPLP GKG + LKE
Sbjct: 363 DSTLRTWEHVFVDDPDFVIVDVDFCHTHLVLILREGRKFSLCAVRLPLPVGGKGPISLKE 422
Query: 360 LHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNML 419
L +LPLPK+VSQI GPNYD+YSSTMRF ISSPVMPDAVVDY+LS GKWNIIQQQ++L
Sbjct: 423 LELQYLPLPKHVSQISSGPNYDFYSSTMRFTISSPVMPDAVVDYNLSDGKWNIIQQQSIL 482
Query: 420 RERTRILYGTASSATISLNAKSG--ESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
ERTRILYGT SSA S + SV E D + +WN LSE+Y+CE Y+V S DG+
Sbjct: 483 HERTRILYGTTSSAGGSREISNALENSVGEANFD-EQMWNSLSEYYACEHYNVSSDDGVL 541
Query: 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537
VPLT++YS K KKEN+NPGLLH HGAYGELLDKRWRSELKSLLDRGWV+A+ADVRGGGGG
Sbjct: 542 VPLTVVYSYKCKKENENPGLLHVHGAYGELLDKRWRSELKSLLDRGWVIAYADVRGGGGG 601
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
GKKWH DGRR KK NS++D+ISCA+FL E++IV E KLAGWGYSAGGLLVA+AIN CP+L
Sbjct: 602 GKKWHQDGRRXKKFNSVQDYISCAKFLAERQIVNEDKLAGWGYSAGGLLVASAINQCPEL 661
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP 657
FRA +L+VPFLD +TLL PI+PL ADYEEFGYPG+ DDFHAIR YSPYDNIQKD YP
Sbjct: 662 FRAAILKVPFLDPISTLLNPIIPLTPADYEEFGYPGNEDDFHAIRRYSPYDNIQKDAAYP 721
Query: 658 AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALET 717
AVL+TSSFNTRFGVWEAAKW+ARVR+ +IYDPKRP++LNLT DIVEENRYL CKESALET
Sbjct: 722 AVLITSSFNTRFGVWEAAKWIARVRDYSIYDPKRPVILNLTIDIVEENRYLHCKESALET 781
Query: 718 AFLIKMMES 726
AFL+K MES
Sbjct: 782 AFLMKAMES 790
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442973|ref|XP_004139255.1| PREDICTED: protease 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/729 (75%), Positives = 625/729 (85%), Gaps = 4/729 (0%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MSSLNDKVAMRHMD+YMEQEEKY EAVM TERLQSKLQSEMASRLAFELSTPPLRWGPW
Sbjct: 63 MSSLNDKVAMRHMDVYMEQEEKYTEAVMGGTERLQSKLQSEMASRLAFELSTPPLRWGPW 122
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRRVEEGKQY VLCRRL SL+EEFIS+KSP+AGFD+ SG+KIEQKL+DYNQEAERFGG
Sbjct: 123 LYYRRVEEGKQYPVLCRRLASLHEEFISNKSPSAGFDYVSGQKIEQKLIDYNQEAERFGG 182
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEELSEVSPDH+FLAYTMYDKDNDYF LSV+NL+SG+LCSKPQ RVSN+AWAK GQ+
Sbjct: 183 YAYEELSEVSPDHRFLAYTMYDKDNDYFRLSVKNLSSGSLCSKPQVDRVSNLAWAKGGQS 242
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTDQNKRP ++YCS IGS DED LLLEE +++V+V IRHTKDF FV V+ FS TSS
Sbjct: 243 LLYVVTDQNKRPCRLYCSTIGSIDEDTLLLEEKDDDVHVYIRHTKDFRFVTVNRFSPTSS 302
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLI+AADP SG+ LIWECE LAHCIVEHH G LYLFTDA+K + D+HYLLR P+
Sbjct: 303 KVFLIDAADPLSGMKLIWECEELAHCIVEHHLGDLYLFTDASKGHERVDSHYLLRSPLKV 362
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP-AGKGVVHLKE 359
RTWE VF+DD V+ DVDFC TH+ LILREGR + LC+V LPLP GKG + LKE
Sbjct: 363 DSTLRTWEHVFVDDPDFVIVDVDFCHTHLVLILREGRKFSLCAVRLPLPVGGKGPISLKE 422
Query: 360 LHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNML 419
L +LPLPK+VSQI GPNYD+YSSTMRF ISSPVMPDAVVDY+LS GKWNIIQQQ++L
Sbjct: 423 LELQYLPLPKHVSQISSGPNYDFYSSTMRFTISSPVMPDAVVDYNLSDGKWNIIQQQSIL 482
Query: 420 RERTRILYGTASSATISLNAKSG--ESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
ERTRILYGT SSA S + SV E D + +WN LSE+Y+CE Y+V S DG+
Sbjct: 483 HERTRILYGTTSSAGGSREISNALENSVGEANFD-EQMWNSLSEYYACEHYNVSSDDGVL 541
Query: 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537
VPLT++YS K KKEN+NPGLLH HGAYGELLDKRWRSELKSLLDRGWV+A+ADVRGGGGG
Sbjct: 542 VPLTVVYSYKCKKENENPGLLHVHGAYGELLDKRWRSELKSLLDRGWVIAYADVRGGGGG 601
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
GKKWH DGRR KK NS++D+ISCA+FL E++IV E KLAGWGYSAGGLLVA+AIN CP+L
Sbjct: 602 GKKWHQDGRRIKKFNSVQDYISCAKFLAERQIVNEDKLAGWGYSAGGLLVASAINQCPEL 661
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP 657
FRA +L+VPFLD +TLL PI+PL ADYEEFGYPG+ DDFHAIR YSPYDNIQKD YP
Sbjct: 662 FRAAILKVPFLDPISTLLNPIIPLTPADYEEFGYPGNEDDFHAIRRYSPYDNIQKDAAYP 721
Query: 658 AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALET 717
AVL+TSSFNTRFGVWEAAKW+ARVR+ +IYDPKRP++LNLT DIVEENRYL CKESALET
Sbjct: 722 AVLITSSFNTRFGVWEAAKWIARVRDYSIYDPKRPVILNLTIDIVEENRYLHCKESALET 781
Query: 718 AFLIKMMES 726
AFL+K MES
Sbjct: 782 AFLMKAMES 790
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096860|ref|XP_002310764.1| predicted protein [Populus trichocarpa] gi|222853667|gb|EEE91214.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/729 (73%), Positives = 589/729 (80%), Gaps = 67/729 (9%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MS LNDKVAMRHMD+YMEQEEKY EAVMSDTE+LQSKLQSEMASRL F+LST P+RWGPW
Sbjct: 66 MSHLNDKVAMRHMDIYMEQEEKYTEAVMSDTEKLQSKLQSEMASRLHFDLSTSPIRWGPW 125
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYY+RVE GKQY VLCRRL SLNE+FIS+K P+ GFDF SG+KIEQK++DYN EAERFGG
Sbjct: 126 LYYKRVEAGKQYPVLCRRLASLNEQFISNKDPSGGFDFVSGRKIEQKMVDYNLEAERFGG 185
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
DKDND F LSVRNLNSGALCSKPQA RVSN+AWAKDGQA
Sbjct: 186 A--------------------DKDNDSFRLSVRNLNSGALCSKPQADRVSNLAWAKDGQA 225
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTDQ+KRP +IYCS+IGST+ED LLL+E ENVYVNIRHTKDF FV V+TFSTT S
Sbjct: 226 LLYVVTDQHKRPSRIYCSMIGSTEEDVLLLDEPAENVYVNIRHTKDFRFVTVNTFSTTFS 285
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLINAADP SG+TL+WECE AHCIVEHH+G+LYLFTDAA+ GQ D+HYLLRCPV+A
Sbjct: 286 KVFLINAADPLSGITLVWECEAQAHCIVEHHQGYLYLFTDAARRGQLVDHHYLLRCPVNA 345
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
S R WE V LKEL
Sbjct: 346 SSGPRIWED--------------------------------------------AVRLKEL 361
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
+P FLPLP +VSQI PGPNYDYYSSTMRF ISSPVMPDAVVDY+LS G WNI+QQQN+L
Sbjct: 362 NPTFLPLPNHVSQIWPGPNYDYYSSTMRFTISSPVMPDAVVDYELSSGNWNIVQQQNLLY 421
Query: 421 ERTRILYGTASSATI---SLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
ERTRILYGT SS I S N + + +NE+KS+ DNLWN LSEFY+CEQYDV S+DG+
Sbjct: 422 ERTRILYGTTSSGGIANGSSNNLNSDFLNEIKSEDDNLWNCLSEFYACEQYDVSSYDGVM 481
Query: 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537
VPLTI+YS K K NQNPGLLHGHGAYGELLDKRWR++LKSLLDRGWV+A+ADVRGGGG
Sbjct: 482 VPLTILYSRKNKNNNQNPGLLHGHGAYGELLDKRWRNDLKSLLDRGWVIAYADVRGGGGH 541
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
GK WHH+GR+ KKLNSIKDF+SCA+FL+E E V+E+KLAGWGYSAGGLLVAAAIN CPDL
Sbjct: 542 GKAWHHNGRQQKKLNSIKDFVSCAKFLVENEFVQENKLAGWGYSAGGLLVAAAINSCPDL 601
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP 657
FRA +L+VPFLDAT+TLL+PILPL AADYEEFG PGDIDDFHAI Y PY NIQKDVLYP
Sbjct: 602 FRAAILKVPFLDATSTLLHPILPLTAADYEEFGCPGDIDDFHAIMKYCPYANIQKDVLYP 661
Query: 658 AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALET 717
AVL+TSSFNTRFGVWEAAKW ARVRE TIYDPKRPILLNLTTDIVEENRYLQCKESALET
Sbjct: 662 AVLITSSFNTRFGVWEAAKWAARVREHTIYDPKRPILLNLTTDIVEENRYLQCKESALET 721
Query: 718 AFLIKMMES 726
AFLIKMMES
Sbjct: 722 AFLIKMMES 730
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745689|emb|CBI40974.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/729 (69%), Positives = 583/729 (79%), Gaps = 50/729 (6%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MS+L+DKVAMRHMD+YMEQEEKY EA MSDTERLQSKLQSEMA R+ ELSTPP+++GPW
Sbjct: 63 MSNLSDKVAMRHMDVYMEQEEKYTEAFMSDTERLQSKLQSEMAFRMTPELSTPPIKFGPW 122
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRRVEEGKQ+ VLCRRL SLNEEFIS+KSP+AGFDF SG++IEQKL+DYNQEAERFGG
Sbjct: 123 LYYRRVEEGKQFPVLCRRLASLNEEFISNKSPSAGFDFVSGRRIEQKLIDYNQEAERFGG 182
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEELSE+SPDH+F+AYTMYDKDNDYF LSVR+LNSG++ SKPQA RVSN+AW KDG+A
Sbjct: 183 YAYEELSEISPDHRFIAYTMYDKDNDYFRLSVRDLNSGSILSKPQADRVSNLAWVKDGKA 242
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+Y VT+ N+RPY+IYCS++GS +ED LLEES++NVYVNIRHTKDF FV V+ FS T+S
Sbjct: 243 LLYTVTNNNRRPYRIYCSMLGSDEEDVKLLEESDDNVYVNIRHTKDFRFVTVNKFSITTS 302
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLINAADP SG+TL+WEC G AHCIVEHH+G LYLFTDAAKEGQ D HYLL PV
Sbjct: 303 KVFLINAADPLSGMTLVWECGGQAHCIVEHHQGCLYLFTDAAKEGQPVDYHYLLCSPVVV 362
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
S R WESVFIDD L++EDVDF THM I+REGR +R+CSV+LPLP GKG V+LKEL
Sbjct: 363 SSSPRNWESVFIDDPDLIIEDVDFNDTHMVFIVREGRKFRICSVALPLPRGKGAVYLKEL 422
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
+PHFLPLPKYVSQI PGPNYDYYSS +RF +SSPVMPDAVVDYDLS G WNIIQQ+NML
Sbjct: 423 NPHFLPLPKYVSQISPGPNYDYYSSIIRFTVSSPVMPDAVVDYDLSTGMWNIIQQKNMLH 482
Query: 421 ERTRILYGTA---SSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
ERTRILYGT SS + +K S +E+ D LWNDLSEFY+CE YDV SHDG+
Sbjct: 483 ERTRILYGTTSSASSLANASISKRSGSTDEVNVKDDLLWNDLSEFYACENYDVSSHDGVL 542
Query: 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537
VPLTI+YS K KKEN +PG+LHGHGAYGELLDKRWR ELKSLLDRGWVVA+ADVRGGGGG
Sbjct: 543 VPLTIVYSRKNKKENHSPGILHGHGAYGELLDKRWRGELKSLLDRGWVVAYADVRGGGGG 602
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
GKKWHHDGRRTKK NSI+DFISCA+FLI+KEI + + C D
Sbjct: 603 GKKWHHDGRRTKKHNSIEDFISCAKFLIDKEI-----------------MLCQVICLGD- 644
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP 657
+ F + ++ PIL YSPYDNIQK+ LYP
Sbjct: 645 -------IKFYFSFSSNFAPILI----------------------KYSPYDNIQKNALYP 675
Query: 658 AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALET 717
AVLV+SSFNTRFGVWEAAKW ARVRE +YDPKRP+LLNLTTDIVEENRYLQ KE+ALE
Sbjct: 676 AVLVSSSFNTRFGVWEAAKWAARVRECAVYDPKRPVLLNLTTDIVEENRYLQSKEAALEA 735
Query: 718 AFLIKMMES 726
AFL+K++ S
Sbjct: 736 AFLLKVIGS 744
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51535946|dbj|BAD38028.1| putative oligopeptidase [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/739 (66%), Positives = 600/739 (81%), Gaps = 19/739 (2%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDT--ERLQSKLQSEMASRLAFELSTPPLRWG 58
M +L+D AMRHMD++ME EEKYAEA ++ +RL KLQ EMASRLA + TPP+RWG
Sbjct: 59 MGALSDAAAMRHMDVHMEAEEKYAEACLAAAGADRLARKLQLEMASRLASDACTPPVRWG 118
Query: 59 PWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERF 118
PWLYYRR +EGKQY VLCRR +L+ EFIS+ P+AGFDFT+GK+IEQKL+DYN+EAERF
Sbjct: 119 PWLYYRRADEGKQYPVLCRRSAALHSEFISYSDPSAGFDFTAGKRIEQKLVDYNKEAERF 178
Query: 119 GGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDG 178
GGY+YEELSEVSPDH+F+AYTMYDKD D FTL VR+L +G LC KP+A RVSNI+WA DG
Sbjct: 179 GGYSYEELSEVSPDHRFIAYTMYDKDKDSFTLMVRDLVTGTLCDKPRADRVSNISWAMDG 238
Query: 179 QALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT 238
+AL+Y+VT++++RPY+++CSIIGS+ +D L+LEE +EN+Y+NIRHTKDF F+ ++ FS T
Sbjct: 239 KALVYIVTNEDRRPYRLFCSIIGSSKDDVLMLEEPDENIYLNIRHTKDFRFITLNVFSDT 298
Query: 239 SSK-----------VFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQE 287
SK V+LINA+DP S + L+WE E HCIVEHH G LYLFTDA++EG
Sbjct: 299 HSKALFLVHYTCNIVYLINASDPLSRMRLVWEGESQVHCIVEHHHGRLYLFTDASREGTP 358
Query: 288 ADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347
D+HYL+ V++ P ++W+ VF+++ G+++EDVDFC THM L+LR+GR +LCSV LP
Sbjct: 359 VDSHYLMLSDVESPGP-KSWKDVFLEEPGVILEDVDFCDTHMVLVLRQGRKLKLCSVKLP 417
Query: 348 LPAGKGV-VHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLS 406
P V L + HP L LP +V QI+PGPNYDY SSTMRF ISSPVMPDAVVDY+L
Sbjct: 418 FPEHIRVPARLSDFHPFDLSLPNHVCQILPGPNYDYRSSTMRFTISSPVMPDAVVDYNLP 477
Query: 407 YGKWNIIQQQNMLRERTRILYGTASSAT-ISLNAKSGESVNELKSDSDNLWNDLSEFYSC 465
GKW I+QQQNML ERT+ LYG A +A+ + ++K G+ +E D D WN+LSE+Y+C
Sbjct: 478 NGKWRIVQQQNMLHERTKALYGNAFAASMVKPSSKGGDLSSEDFGDCD--WNELSEYYAC 535
Query: 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWV 525
E YDVPS DG+ VPLT++YS K+K+E NPGLLHGHGAYGE+LDKRWRSELKSLLDRGWV
Sbjct: 536 EYYDVPSKDGVLVPLTLVYSQKHKQEG-NPGLLHGHGAYGEILDKRWRSELKSLLDRGWV 594
Query: 526 VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGL 585
+AFADVRGGGG GKKWH DG RTKK+NSI DFISC FL+EK I+KE+KLAGWGYSAGGL
Sbjct: 595 IAFADVRGGGGYGKKWHQDGARTKKMNSIYDFISCGEFLLEKGIIKENKLAGWGYSAGGL 654
Query: 586 LVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYS 645
LVA+AIN PDLFRAVVL+VPFLD NTLL+PILPL A DYEEFG+P D ++F +IR YS
Sbjct: 655 LVASAINTRPDLFRAVVLKVPFLDVCNTLLHPILPLTAIDYEEFGFPVDHEEFLSIRKYS 714
Query: 646 PYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN 705
PYDNIQKDV YPAV VTSSFNTRFGVWEAAKWVA+VRE T YDP+RP++LNLTTD+VEE+
Sbjct: 715 PYDNIQKDVPYPAVFVTSSFNTRFGVWEAAKWVAKVREVTRYDPERPVILNLTTDVVEES 774
Query: 706 RYLQCKESALETAFLIKMM 724
+YLQ KE ALETAFLIKM+
Sbjct: 775 KYLQTKELALETAFLIKMI 793
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 726 | ||||||
| TAIR|locus:2158098 | 792 | AT5G66960 [Arabidopsis thalian | 0.998 | 0.915 | 0.746 | 1.3e-304 | |
| TAIR|locus:2205415 | 757 | AT1G69020 [Arabidopsis thalian | 0.747 | 0.717 | 0.428 | 3.4e-143 | |
| TAIR|locus:2011997 | 710 | AT1G50380 [Arabidopsis thalian | 0.388 | 0.397 | 0.354 | 1.8e-65 | |
| TIGR_CMR|SO_0144 | 711 | SO_0144 "protease II" [Shewane | 0.417 | 0.426 | 0.329 | 4.8e-58 | |
| UNIPROTKB|Q4KGJ9 | 684 | ptrB "Protease 2" [Pseudomonas | 0.418 | 0.444 | 0.347 | 1.6e-56 | |
| UNIPROTKB|P24555 | 686 | ptrB "oligopeptidase B" [Esche | 0.409 | 0.432 | 0.320 | 1.5e-53 | |
| TIGR_CMR|CPS_3026 | 704 | CPS_3026 "protease II" [Colwel | 0.404 | 0.417 | 0.335 | 2.3e-51 | |
| TIGR_CMR|CPS_4644 | 719 | CPS_4644 "protease II" [Colwel | 0.358 | 0.361 | 0.312 | 3.4e-46 | |
| UNIPROTKB|F6UU49 | 727 | PREPL "Uncharacterized protein | 0.269 | 0.269 | 0.395 | 2.1e-45 | |
| MGI|MGI:2441932 | 725 | Prepl "prolyl endopeptidase-li | 0.269 | 0.270 | 0.39 | 8.4e-43 |
| TAIR|locus:2158098 AT5G66960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2923 (1034.0 bits), Expect = 1.3e-304, P = 1.3e-304
Identities = 546/731 (74%), Positives = 626/731 (85%)
Query: 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPW 60
MS L DKVAMRHMD+YMEQEEKY EAV++DT+R+Q+KLQSEMASRL+FELSTPPLRWGPW
Sbjct: 63 MSKLEDKVAMRHMDIYMEQEEKYTEAVLADTDRIQTKLQSEMASRLSFELSTPPLRWGPW 122
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGG 120
LYYRRVEEGKQY VLCRRL SL+EEFISHKSPAAGFD+TSGK+IEQKLLDYNQEAERFGG
Sbjct: 123 LYYRRVEEGKQYPVLCRRLASLHEEFISHKSPAAGFDYTSGKRIEQKLLDYNQEAERFGG 182
Query: 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA 180
YAYEE+SE+SPDHKFLAYTMYDKDNDYF L VRNLNSGALCSKP A RVSNIAWAK+GQA
Sbjct: 183 YAYEEMSEISPDHKFLAYTMYDKDNDYFKLCVRNLNSGALCSKPHADRVSNIAWAKNGQA 242
Query: 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSS 240
L+YVVTDQ KRP +IYCS IGSTDED LL EE NV+VNIRHTKDFHFV V+TFSTT S
Sbjct: 243 LLYVVTDQKKRPCRIYCSTIGSTDEDVLLHEEFEGNVHVNIRHTKDFHFVTVNTFSTTFS 302
Query: 241 KVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA 300
KVFLINAADPFSGL L+WE AHCI+EHH+GFLYLFT+A+ +G D+HYLLR PV
Sbjct: 303 KVFLINAADPFSGLALVWEHNAPAHCIIEHHQGFLYLFTNASNDGGTVDHHYLLRSPVHF 362
Query: 301 SFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360
S R WE+VFI+D L++EDVDFCK H++LI++E +++++C V LPL + VHL+++
Sbjct: 363 SSCQRIWETVFINDPELIIEDVDFCKKHLSLIVKEMQSFKICVVDLPLKTKRVPVHLRDI 422
Query: 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLR 420
P +LPLPK+VSQI PG NYD+ S TMRF ISS VMPDAVVDYDL GKWNI+QQQNML
Sbjct: 423 KPRYLPLPKHVSQIFPGTNYDFNSPTMRFTISSLVMPDAVVDYDLLNGKWNIVQQQNMLH 482
Query: 421 ERTRILYGTASSATISLNAKSGE-----SVNELKSDSDNLWNDLSEFYSCEQYDVPSHDG 475
ERTR+LYGTA+S T S N SG + +++DNLWNDL+EFY+C+ ++V SHDG
Sbjct: 483 ERTRVLYGTANS-TESPNIPSGTRTVSFDTEDTTAENDNLWNDLTEFYACDYHEVSSHDG 541
Query: 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRXXX 535
VPL+I+YS K+ENQ PGLLH HGAYGE+LDKRWRSELKSLLDRGWV+A+ADVR
Sbjct: 542 AMVPLSIVYSRAQKEENQKPGLLHVHGAYGEMLDKRWRSELKSLLDRGWVLAYADVRGGG 601
Query: 536 XXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP 595
KKWH DGR KKLNSIKD+I CA++L+E IV+E+KLAGWGYSAGGL+VA+AIN CP
Sbjct: 602 GKGKKWHQDGRGAKKLNSIKDYIQCAKYLVENNIVEENKLAGWGYSAGGLVVASAINHCP 661
Query: 596 DLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVL 655
DLF+A VL+VPFLD T+TL+YPILPL A DYEEFGYPGDI+DFHAIR YSPYDNI KDVL
Sbjct: 662 DLFQAAVLKVPFLDPTHTLIYPILPLTAEDYEEFGYPGDINDFHAIREYSPYDNIPKDVL 721
Query: 656 YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESAL 715
YPAVLVTSSFNTRFGVWEAAKWVARVR++T DP+RP+LLNLTTDIVEENR+LQ KESAL
Sbjct: 722 YPAVLVTSSFNTRFGVWEAAKWVARVRDNTFNDPERPVLLNLTTDIVEENRFLQTKESAL 781
Query: 716 ETAFLIKMMES 726
E AFLIKMMES
Sbjct: 782 EIAFLIKMMES 792
|
|
| TAIR|locus:2205415 AT1G69020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 3.4e-143, Sum P(2) = 3.4e-143
Identities = 241/563 (42%), Positives = 355/563 (63%)
Query: 177 DGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTF 235
DG L Y VTD+N+RP+++ + + S +DA++ E + + V+I TKD FV +++
Sbjct: 194 DGITLFYTVTDENQRPHRVVVTNVESDGRDDAVVFTERDSSFCVDITTTKDGKFVTINSN 253
Query: 236 STTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEG-QE--ADNHY 292
S TSS+V+++NA P +GL E C +EHH GF Y+ T++ E + +Y
Sbjct: 254 SRTSSEVYIVNADKPMAGLQRTRERVPGVQCFLEHHNGFFYILTNSPSNAISEWSGEGYY 313
Query: 293 LLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGK 352
L RC V+ + W++VF D +V++D+D ++ L L + LCS+ +P+ A
Sbjct: 314 LTRCLVE-EIEASDWQTVFRPDDDVVIQDMDMFNDYLVLYLNKKGLPMLCSIDMPIKAN- 371
Query: 353 GVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNI 412
H+ +L P + PLP + PG N+D+ SS R +SSPV+PD +VDYD+S ++I
Sbjct: 372 -TKHMDDLVPWYFPLPVDSCSVAPGSNHDFQSSIYRVVLSSPVIPDTIVDYDVSRRLFSI 430
Query: 413 IQQQNML---RERTRILYGTASSATIS---LNAKSGESVN-ELKSDSDNLWNDLSEFYSC 465
+QQ+ + + ++ Y TA +T + LN ++ E + +L S W DLS+ Y C
Sbjct: 431 VQQEGGVVDNSDSSKPWY-TADRSTENNGQLNDRTSEGEDGQLDSRMPK-WEDLSDTYVC 488
Query: 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWV 525
E+ +V SHDG+ VPLTI+YS + K++++PG+L G+GAYGE+LDK W + S+LDRGWV
Sbjct: 489 ERQEVSSHDGVEVPLTILYSREAWKKSESPGMLIGYGAYGEVLDKSWCTNRLSMLDRGWV 548
Query: 526 VAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGL 585
+AFADVR WH G R+ K NSI+DFI A++L+EK V H LA GYSAG +
Sbjct: 549 IAFADVRGGGSGEFSWHKSGTRSLKQNSIQDFIYSAKYLVEKGYVHRHHLAAVGYSAGAI 608
Query: 586 LVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYS 645
L AAA+N P LF+AV+L+VPF+D NTL P LPL D+EEFG P + DF +I +YS
Sbjct: 609 LPAAAMNMHPSLFQAVILKVPFVDVLNTLSDPNLPLTLLDHEEFGNPDNQTDFGSILSYS 668
Query: 646 PYDNIQKDVLYPAVLVTSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTD---I 701
PYD I+KDV YP++LVT+SF+ +R GVWE AKWVA++R+ST +D R ++L +
Sbjct: 669 PYDKIRKDVCYPSMLVTTSFHDSRVGVWEGAKWVAKIRDSTCHDCSRAVILKTNMNGGHF 728
Query: 702 VEENRYLQCKESALETAFLIKMM 724
E RY QC+E+A + AFL+K+M
Sbjct: 729 GEGGRYAQCEETAFDYAFLLKVM 751
|
|
| TAIR|locus:2011997 AT1G50380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 1.8e-65, Sum P(2) = 1.8e-65
Identities = 102/288 (35%), Positives = 161/288 (55%)
Query: 441 SGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKK-ENQNPGLLH 499
SG SV + K D+ D S Y E+ V + DG +P++I+Y+ K K + +P LL+
Sbjct: 420 SGTSVVK-KIDTVLGGFDASN-YVTERKWVAASDGTQIPMSIVYNKKLAKLDGSDPLLLY 477
Query: 500 GHGAYGELLDKRWRSELKSLLDRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFIS 559
G+G+Y +D +++ SLLDRG+ A VR ++W+ +G+ KK N+ DFI+
Sbjct: 478 GYGSYEISVDPYFKASRLSLLDRGFTFVIAHVRGGGEMGRQWYENGKLLKKKNTFTDFIA 537
Query: 560 CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPIL 619
CA LIE + + KL G SAGGLL+ A +N PDLF+ V+ VPF+D T+L P +
Sbjct: 538 CAERLIELKYCSKEKLCMEGRSAGGLLMGAVVNMRPDLFKVVIAGVPFVDVLTTMLDPTI 597
Query: 620 PLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNT-RFGVWEAAKWV 678
PL +++EE+G P + + +++YSP DN+ YP +LVT+ N R E KWV
Sbjct: 598 PLTTSEWEEWGDPRKEEFYFYMKSYSPVDNVTAQN-YPNMLVTAGLNDPRVMYSEPGKWV 656
Query: 679 ARVRESTIYDPKRPILLNLTTD-IVEENRYLQCKESALETAFLIKMME 725
A++RE + L + R+ + +E A AF++K+++
Sbjct: 657 AKLREMKTDNNVLLFKCELGAGHFSKSGRFEKLQEDAFTFAFMMKVLD 704
|
|
| TIGR_CMR|SO_0144 SO_0144 "protease II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 4.8e-58, Sum P(3) = 4.8e-58
Identities = 103/313 (32%), Positives = 166/313 (53%)
Query: 421 ERTRILYGTASSA-TISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVP 479
++ R+ Y + ++ TI S +L L + Y E+ V + DG VP
Sbjct: 396 DKLRVFYSSLTTPETIYEYHLSNPDRRDLLKQEQVLGGFDAGAYRAERVFVTARDGAKVP 455
Query: 480 LTIIY-SPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRXXXXXX 538
++++Y K+KK+ NP +G+G+YG ++ + S + SLLDRG+V A A VR
Sbjct: 456 VSLVYRKDKFKKDGTNPLYQYGYGSYGYTVEPDFSSSVISLLDRGFVYAIAHVRGGEMLG 515
Query: 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598
+ W+ G+ K NS DFI L E+ ++K+ G SAGGLL+ A N P+ +
Sbjct: 516 RPWYDAGKLLNKKNSFYDFIDVTTALTEQGYGDKNKVVAAGGSAGGLLMGAIANMAPEKY 575
Query: 599 RAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPA 658
A+ VPF+D T+L +PL +Y+E+G P D F + +YSPYDN+ D YP
Sbjct: 576 FAIAAHVPFVDVVTTMLDESIPLTTNEYDEWGNPNDKTYFDYMLSYSPYDNVA-DHEYPH 634
Query: 659 VLVTSSFN-TRFGVWEAAKWVARVRE--STIYDPKRPILL-NLTTDIV---EENRYLQCK 711
+LVT+ + ++ +E AKWVA++RE + Y +LL ++ D + RY Q +
Sbjct: 635 LLVTTGLHDSQVQYFEPAKWVAKLREVQNKWYKLDDKVLLFHVDMDAGHGGKSGRYRQYQ 694
Query: 712 ESALETAFLIKMM 724
++A E AF + ++
Sbjct: 695 DTAQEYAFFLSLL 707
|
|
| UNIPROTKB|Q4KGJ9 ptrB "Protease 2" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 110/317 (34%), Positives = 168/317 (52%)
Query: 416 QNMLR---ERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPS 472
QN L ER R+ Y + + + ++ ++ L E Y ++ +
Sbjct: 370 QNSLEFSSERIRLRYEALNRPAQVRQLQLADGQQQVLKETPVLGPFDPEAYVSQRLWATA 429
Query: 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELK-SLLDRGWVVAFADV 531
DG VP++++ + P L+G+GAYGE LD W S + SLLDRG A A V
Sbjct: 430 ADGTQVPISLVVKRDCLGQ-PTPLYLYGYGAYGESLDP-WFSHARLSLLDRGVAFAIAHV 487
Query: 532 RXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAI 591
R + W+ G++ K N+ DFI+CA LI + + +LA G SAGGLL+ A +
Sbjct: 488 RGGGELGEAWYRAGKQEHKQNTFSDFIACAEHLIAQGLTSAQQLAISGGSAGGLLIGAVL 547
Query: 592 NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ 651
N P+LF+ + EVPF+D NT+L P LPL +Y+E+G P + + + I+ Y+PY+N++
Sbjct: 548 NQRPELFKVAIAEVPFVDVLNTMLDPELPLTVTEYDEWGNPEEPEVYARIKAYAPYENVR 607
Query: 652 KDVLYPAVLVTSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE---ENRY 707
YPA LV + +N +R WEAAKWVAR+R + D P+LL RY
Sbjct: 608 AQA-YPATLVIAGYNDSRVQYWEAAKWVARLRATRTDD--NPLLLKTELGAGHGGMSGRY 664
Query: 708 LQCKESALETAFLIKMM 724
++ ALE AF++ ++
Sbjct: 665 QGLRDVALEYAFILNIL 681
|
|
| UNIPROTKB|P24555 ptrB "oligopeptidase B" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.5e-53, Sum P(3) = 1.5e-53
Identities = 101/315 (32%), Positives = 167/315 (53%)
Query: 421 ERTRILYGTASSAT----ISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGI 476
E R+ YG +S T L+ +GE +++ + + Y E + + DG+
Sbjct: 371 ETARLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFY---AANYRSEHLWIVARDGV 427
Query: 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRXXXX 536
VP++++Y K+ ++ NP L++G+G+YG +D + SLLDRG+V A VR
Sbjct: 428 EVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGE 487
Query: 537 XXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD 596
++W+ DG+ KK N+ D++ L++ G SAGG+L+ AIN P+
Sbjct: 488 LGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPE 547
Query: 597 LFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLY 656
LF V+ +VPF+D T+L +PL ++EE+G P D + +++YSPYDN+ Y
Sbjct: 548 LFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQA-Y 606
Query: 657 PAVLVTSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV-----EENRYLQC 710
P +LVT+ + ++ WE AKWVA++RE D LL L TD+ + R+
Sbjct: 607 PHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDH----LLLLCTDMDSGHGGKSGRFKSY 662
Query: 711 KESALETAFLIKMME 725
+ A+E AFL+ + +
Sbjct: 663 EGVAMEYAFLVALAQ 677
|
|
| TIGR_CMR|CPS_3026 CPS_3026 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 2.3e-51, Sum P(2) = 2.3e-51
Identities = 104/310 (33%), Positives = 160/310 (51%)
Query: 424 RILYG--TASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLT 481
R+ Y T + + +GE +L L + E Y E+ + + DG VP++
Sbjct: 400 RLYYSSLTTPGSLFEFDLATGE--RKLLKQQKVLGDFTKEDYQSERLFITARDGTEVPVS 457
Query: 482 IIY-SPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRXXXXXXKK 540
I+Y S ++K+ NP L +G+GAYG +D + S+ SLLDRG+V A VR ++
Sbjct: 458 IVYRSDTFQKDGSNPLLQYGYGAYGITIDPDFSSQTLSLLDRGFVYVIAHVRGSEMLGRE 517
Query: 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRA 600
W+ G+ K N+ DFI + L+E+ + K+ G SAGGLL+ A +N P+L+
Sbjct: 518 WYETGKMAHKQNTFNDFIDVTKALVEQGYGAKDKIFASGGSAGGLLMGAVVNQAPELYLG 577
Query: 601 VVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVL 660
+ VPFLD T+L +PL +Y E+G P + + +I YSP DNI YP +L
Sbjct: 578 IGAHVPFLDVLTTMLDESIPLTTNEYNEWGNPNEAQAYQSILAYSPIDNISAQH-YPHIL 636
Query: 661 VTSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE-----ENRYLQCKESA 714
VT+ + ++ +E KWVA++RE D LL TD+ R+ KE A
Sbjct: 637 VTTGLHDSQVQYFEPMKWVAKMREFKTDDN----LLLFKTDMEAGHGGASGRFKSLKEKA 692
Query: 715 LETAFLIKMM 724
LE +F I ++
Sbjct: 693 LEMSFFISLL 702
|
|
| TIGR_CMR|CPS_4644 CPS_4644 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 3.4e-46, Sum P(2) = 3.4e-46
Identities = 85/272 (31%), Positives = 148/272 (54%)
Query: 460 SEFYSCEQYDVPSHDGISVPLTIIY-SPKYKKENQNPGLLHGHGAYGELLDKRWRSELKS 518
S Y+ E+ V + DG VP++++Y K+KK+ NP + +G+YG +D + S
Sbjct: 450 SNNYASERIFVKARDGKKVPVSLVYRKDKFKKDGTNPLYQYAYGSYGHTIDPSFSVSRLS 509
Query: 519 LLDRGWVVAFADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGW 578
LLDRG+V A A +R + W+ DG++ K+N+ DFI + L + + +
Sbjct: 510 LLDRGFVYAVAHIRGSEMLGRPWYEDGKKLTKMNTFTDFIDVTKDLTAQGYGDKENVFAV 569
Query: 579 GYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDF 638
G SAGGLL+ A IN P+ ++ + VPF+D T+L +PL +++E+G P + +
Sbjct: 570 GGSAGGLLMGAVINMAPEQYKGIAAAVPFVDVVTTMLDESIPLTTNEFKEWGNPKEKTYY 629
Query: 639 HAIRNYSPYDNIQKDVLYPAVLVTSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNL 697
+ +YSPYD ++ YP +LVT+ + ++ +E KWVA++R+ Y +LL
Sbjct: 630 DYMLSYSPYDQVKAQD-YPNILVTTGLHDSQVQYFEPMKWVAKLRD---YKTDDNLLL-F 684
Query: 698 TTDIVE-----ENRYLQCKESALETAFLIKMM 724
TD+ R+ + ++AL+ +F I ++
Sbjct: 685 KTDMEAGHGGASGRFKRIHDTALQYSFFIDLL 716
|
|
| UNIPROTKB|F6UU49 PREPL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 79/200 (39%), Positives = 111/200 (55%)
Query: 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAF 528
+ S DG SVP+TI + + + P L+H +GAYG L +R E + L+D GW++A+
Sbjct: 447 EAKSKDGKSVPMTIFHKTDSEDLQKKPLLVHVYGAYGMDLKMNFRPERRVLVDDGWILAY 506
Query: 529 ADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVA 588
VR +WH DGR TKKLN + D +C + L + + +SAGG+LV
Sbjct: 507 CHVRGGGELGLQWHADGRLTKKLNGLADLEACIKTLHGQGFSQPSLTTLTAFSAGGVLVG 566
Query: 589 AAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA--IRNYSP 646
A N P+L RAV LE PFLD NT++ LPL + EE+G P D+ H I+ Y P
Sbjct: 567 ALCNSNPELLRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSS-DEKHKNYIKRYCP 625
Query: 647 YDNIQKDVLYPAVLVTSSFN 666
Y NI K YP++ +T+ N
Sbjct: 626 YQNI-KPQHYPSIHITAYEN 644
|
|
| MGI|MGI:2441932 Prepl "prolyl endopeptidase-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 8.4e-43, Sum P(2) = 8.4e-43
Identities = 78/200 (39%), Positives = 110/200 (55%)
Query: 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAF 528
+ S DG VP+T+ + + + P L+H +GAYG L +R E + L+D GW++A+
Sbjct: 445 EAKSKDGKLVPMTVFHKTDSEDLQRKPLLVHVYGAYGMDLKMNFRPEKRVLVDDGWILAY 504
Query: 529 ADVRXXXXXXKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVA 588
VR +WH DGR TKKLN + D ++C + L + + +SAGG+LV
Sbjct: 505 CHVRGGGELGLQWHADGRLTKKLNGLADLVACIKTLHSQGFSQPSLTTLSAFSAGGVLVG 564
Query: 589 AAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA--IRNYSP 646
A N P+L RAV LE PFLD NT+L LPL + EE+G P D+ H I+ Y P
Sbjct: 565 ALCNSKPELLRAVTLEAPFLDVLNTMLDTTLPLTLEELEEWGNPSS-DEKHKNYIKRYCP 623
Query: 647 YDNIQKDVLYPAVLVTSSFN 666
NI K YP+V +T+ N
Sbjct: 624 CQNI-KPQHYPSVHITAYEN 642
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 726 | |||
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 1e-124 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 8e-75 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 8e-41 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 2e-38 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 2e-36 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 4e-12 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 2e-05 | |
| COG2267 | 298 | COG2267, PldB, Lysophospholipase [Lipid metabolism | 5e-05 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 386 bits (993), Expect = e-124
Identities = 216/719 (30%), Positives = 347/719 (48%), Gaps = 96/719 (13%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
Y+E E Y EAVM+ + LQ K+ E+ R+ + + P R GP+ YY R EEGK+Y +
Sbjct: 43 YLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIY 102
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
CR+ G + E+ LLD N+EAE ++ S +SPDH
Sbjct: 103 CRQPDE-------------------GGEGEEVLLDVNKEAEGHDFFSLGAAS-ISPDHNL 142
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195
LAY++ ++ +TL ++L +G + AWA DG+ L Y D+N RP ++
Sbjct: 143 LAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKV 202
Query: 196 YCSIIGSTDE-DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL 254
+ +G+ D L+ EE ++ ++++ ++ ++ + S +S+V L++A DP
Sbjct: 203 WRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDP---- 258
Query: 255 TLIWEC-----EGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES 309
+ G+ + VEH Y+ ++A + N L+R PV A S W
Sbjct: 259 EAEPKVVLPRENGVEY-SVEHGGDRFYILSNA-----DGKNFKLVRAPVSAD-KSN-WRE 310
Query: 310 VFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK 369
+ + + +E VD H+ L+ R+ R+ V G E
Sbjct: 311 LIPHREDVRLEGVDLFADHLVLLERQEGLPRV--VVRDRKTG-------EERGIAFDDEA 361
Query: 370 YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGT 429
Y + + P +D S +R++ SS P + DYD++ G+ +++QQ
Sbjct: 362 YSAGLSGNPEFD--SDRLRYSYSSMTTPATLFDYDMATGERTLLKQQ------------- 406
Query: 430 ASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYK 489
E+ D E Y + + DG+ VP++++Y K
Sbjct: 407 -----------------EVPGGFDP------EDYVSRRIWATADDGVQVPVSLVYRKDTK 443
Query: 490 KENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549
+ P LL+G+GAYG +D + SLLDRG+V A A VRGGG G+ W+ DG+
Sbjct: 444 LDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLN 503
Query: 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609
K N+ DFI+ AR L+++ ++ G SAGG+L+ A N PDLF ++ +VPF+D
Sbjct: 504 KKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVD 563
Query: 610 ATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN-TR 668
T+L P LPL +++E+G P D + + I++YSPYDN++ YPA+LVT+ N R
Sbjct: 564 VLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQP-YPAILVTTGLNDPR 622
Query: 669 FGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE-----ENRYLQCKESALETAFLIK 722
WE AKWVA++RE P+LL T++ R+ + +E A E AFL+K
Sbjct: 623 VQYWEPAKWVAKLRELKTDG--NPLLLK--TNMDAGHGGASGRFQRLEEIAFEYAFLLK 677
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (652), Expect = 8e-75
Identities = 201/739 (27%), Positives = 331/739 (44%), Gaps = 129/739 (17%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLA-FELSTPPLRWGPWLYYRRV-EEGKQYL 73
Y+ QE Y VM+ + LQ ++ E+ R+ E+S P ++ G YR + E G +Y
Sbjct: 39 YLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNG--YRYRHIYEPGCEYA 96
Query: 74 VLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDH 133
+ R+ +EE+ + LLD N+ A Y ++ ++PD+
Sbjct: 97 IYQRQSA-FSEEW----------------DEWETLLDANKRAAHSEFYTLGGMA-ITPDN 138
Query: 134 KFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKR-P 192
+A + + RNL +G + + WA D YV P
Sbjct: 139 TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLP 198
Query: 193 YQIYCSIIG-STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINA---- 247
YQ++ IG +D L+ EE ++ YV++ T H+V +H S T+S+V L++A
Sbjct: 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD 258
Query: 248 ADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW 307
A+PF L + E ++H++ YL + + N L R V + W
Sbjct: 259 AEPFVFLPRRKDHE----YSLDHYQHRFYL-----RSNRHGKNFGLYRTRVR---DEQQW 306
Query: 308 E--------------SVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKG 353
E ++F D LVVE+ T + I R +T + ++ PA
Sbjct: 307 EELIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQINR--KTREVIGIAFDDPA--- 359
Query: 354 VVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNII 413
YV+ I P + +S +R+ SS PD + + D+ G+ ++
Sbjct: 360 ----------------YVTWIAYNPEPE--TSRLRYGYSSMTTPDTLFELDMDTGERRVL 401
Query: 414 QQQNMLRERTRILYGTASSATISLNAKSGESVNELKS-DSDNLWNDLSEFYSCEQYDVPS 472
+Q E+ D+ N Y E + +
Sbjct: 402 KQT------------------------------EVPGFDAAN--------YRSEHLWITA 423
Query: 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVR 532
DG+ VP++++Y K+ ++ NP L++G+G+YG +D + SLLDRG+V A VR
Sbjct: 424 RDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVR 483
Query: 533 GGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 592
GGG G++W+ DG+ KK N+ D++ L++ G G SAGG+L+ AIN
Sbjct: 484 GGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAIN 543
Query: 593 CCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQK 652
P+LF V+ +VPF+D T+L +PL ++EE+G P D + +++YSPYDN+
Sbjct: 544 QRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTA 603
Query: 653 DVLYPAVLVTSSF-NTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDI-----VEENR 706
YP +LVT+ +++ WE AKWVA++RE D LL L TD+ + R
Sbjct: 604 QA-YPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDH----LLLLCTDMDSGHGGKSGR 658
Query: 707 YLQCKESALETAFLIKMME 725
+ + A+E AFLI + +
Sbjct: 659 FKSYEGVAMEYAFLIALAQ 677
|
Length = 686 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 8e-41
Identities = 65/175 (37%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 511 RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570
+ L+ L DRG+VVA A+ RG GG G+ WH G+ N DFI+ A +LI + V
Sbjct: 2 SFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYV 61
Query: 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 630
+LA WG S GG L AA+N PDLF+A V VP +D + Y E+G
Sbjct: 62 DPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDT--SPFTERYMEWG 119
Query: 631 YPGD-IDDFHAIRNYSPYDNIQKDVLYPAVLV-TSSFNTRFGVWEAAKWVARVRE 683
P D + + + YSPYDN++ YP +L+ + R EA K VA ++
Sbjct: 120 NPWDNEEGYRYLSPYSPYDNVK---AYPPLLLIHGLHDDRVPPAEALKLVAALQA 171
|
Length = 212 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-38
Identities = 91/271 (33%), Positives = 133/271 (49%), Gaps = 18/271 (6%)
Query: 420 RERTRILYGTASSAT----ISLNAKSGES--VNELKSDSDNLWNDLSEFYSCEQYDVPSH 473
++ + S T L+ GE + E D ++ Y EQ+ S
Sbjct: 349 KDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQFD------ADNYEVEQFFATSK 402
Query: 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRG 533
DG +P I+ K K+++NP LL+ +G + L R+ K L+RG V A++RG
Sbjct: 403 DGTRIPYFIVR--KGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRG 460
Query: 534 GGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593
GG G +WH G + K N DFI+ A LI++ I KL G S GGLLV AA+
Sbjct: 461 GGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQ 520
Query: 594 CPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD 653
P+LF A V EVP LD L Y +L ++ E+G P D +D + YSPY N++
Sbjct: 521 RPELFGAAVCEVPLLD---MLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPG 577
Query: 654 VLYPAVLVTSSF-NTRFGVWEAAKWVARVRE 683
YP L+T+S + R A K+ A+++E
Sbjct: 578 QKYPPTLITTSLHDDRVHPAHARKFAAKLQE 608
|
Length = 648 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 88/411 (21%), Positives = 173/411 (42%), Gaps = 44/411 (10%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
++E E KY E ++ + L+ K++ E+ + + ++ + P R G + YY R GK VL
Sbjct: 36 WVEAENKYTEDFLAQLKPLREKIKEELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVL 95
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
RR + E+ LD N +E + SPD +
Sbjct: 96 YRRDAGEGPG-----------------ETEEVFLDPNTLSEDGDFTVALDGYAFSPDGRL 138
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQALIYVVTDQNKR--- 191
LAY++ +D++T+ R++ +G + V+ S I WA D + Y D+ +R
Sbjct: 139 LAYSLSLSGSDWYTIRFRDVETGEPLPDVLEGVKFSGIVWAPDNKGFFYSRYDEPERGST 198
Query: 192 --PYQIYCSIIG-STDEDALLLEESNENV-YVNIRHTKDFHFVCVHTFSTTS-SKVFLIN 246
+++ +G +D L+ EE +E Y+ + D ++ + + S T +++++++
Sbjct: 199 NLNQKVWRHRLGTPQSQDVLVFEEPDEPFWYLGAERSDDGKYLFISSASGTDVNELYVLD 258
Query: 247 AADPFSG-LTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSR 305
A G L + + VEH Y T+ A N L+R ++ P+
Sbjct: 259 LAQEKDGPLRKVVPRFDGVYYYVEHEGDTFYFLTN-----DGAPNFRLVRVDLNDPSPAD 313
Query: 306 TWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFL 365
+ + + +++E++ ++ L R RL L G + FL
Sbjct: 314 WKDVIVEHREDVLLEEITVFGNYLVLSYRRDALSRL--QVFDLGGGGVLFE------EFL 365
Query: 366 PLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQ 416
P VS + +Y +R++ SS + P + D DL+ G+ +++ +
Sbjct: 366 PGVGSVS----SASGEYDDDELRYSFSSFLTPGTIYDLDLATGELELLKDR 412
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-12
Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 14/198 (7%)
Query: 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWV 525
E S+DG ++ + P + + P +++ HG + + E++ L G+
Sbjct: 366 EPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYA 425
Query: 526 VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGL 585
V + RG G G+++ R ++D I+ L++ +V ++ G S GG
Sbjct: 426 VLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGY 485
Query: 586 LVAAAINCCPDLFRAVVLEVP----FLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 641
+ A P AV + +T D EE G G +D
Sbjct: 486 MTLLAATKTPRFKAAVAVAGGVDWLLYFGESTEGL------RFDPEENGG-GPPEDREKY 538
Query: 642 RNYSP---YDNIQKDVLY 656
+ SP DNI+ +L
Sbjct: 539 EDRSPIFYADNIKTPLLL 556
|
Length = 620 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 14/141 (9%)
Query: 497 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKD 556
LLHG G E L L G+ V D+ G G + S++D
Sbjct: 3 LLHGAGGSAESWRP-----LAEALAAGYRVLAPDLPGHGD-------SDGPPRTPYSLED 50
Query: 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY 616
+ L++ + + G+S GG + AA P+ +VL P L LL
Sbjct: 51 DAADLAALLDA--LGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLA 108
Query: 617 PILPLIAADYEEFGYPGDIDD 637
+ A D+ +
Sbjct: 109 ADAAALLALLRAALLDADLRE 129
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 45/217 (20%), Positives = 71/217 (32%), Gaps = 40/217 (18%)
Query: 497 LLHG----HGAYGELLDKRWRSELKSLLDRG-WVVAFADVRGGG--GGGKKWHHDGRRTK 549
L+HG G Y EL D L RG V A D+RG G G++ H
Sbjct: 39 LVHGLGEHSGRYEELADD--------LAARGFDVYAL-DLRGHGRSPRGQRGH------- 82
Query: 550 KLNSIKDFISCARFLIEKEIVKEH--KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607
++S D++ +E + + G+S GGL+ + P +VL P
Sbjct: 83 -VDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPA 141
Query: 608 LDATNTLLYPILPLIAAD-----YEEFGYPGDID---DFHAI-RNYSPYDNIQKDVLYPA 658
L +L IL +A + ++ + R+ + + D P
Sbjct: 142 LGLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEAD---PL 198
Query: 659 VLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL 695
+ V V A P+LL
Sbjct: 199 IGVGGP--VSRWVDLALLAGRVPALRDAPAIALPVLL 233
|
Length = 298 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 726 | |||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 100.0 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 100.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.98 | |
| PRK10566 | 249 | esterase; Provisional | 99.85 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.84 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.83 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.81 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.81 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.81 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.8 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.78 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.77 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.76 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.76 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.75 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.75 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.74 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.74 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.74 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.73 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.73 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.72 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.71 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.69 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.69 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.67 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.66 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.66 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.66 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.66 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.66 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.66 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.63 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.63 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.62 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.61 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.61 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.58 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.58 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.57 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.57 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.57 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.57 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.56 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.53 | |
| PLN02511 | 388 | hydrolase | 99.53 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.51 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.5 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.5 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.49 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.48 | |
| PLN00021 | 313 | chlorophyllase | 99.47 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.47 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.47 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.46 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.45 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.43 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.42 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.42 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.41 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.4 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.4 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.39 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.39 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.39 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.38 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.38 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.38 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.38 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.38 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.38 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.37 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.35 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.35 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.35 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.35 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.33 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.32 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.32 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.31 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.31 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.3 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.29 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.28 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.26 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.25 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.23 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.23 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.22 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.21 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.21 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.19 | |
| PLN02578 | 354 | hydrolase | 99.18 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.17 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.17 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.15 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.13 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.13 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.12 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.12 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.11 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.08 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.07 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.04 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.01 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.01 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.0 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 98.98 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.96 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 98.94 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.94 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.93 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 98.92 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.86 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.82 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.78 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 98.77 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.72 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.71 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.69 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 98.68 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.66 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.64 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.62 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.6 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.6 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.59 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.56 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.55 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.54 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.52 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.51 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.46 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.45 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.45 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.45 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.42 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.39 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.37 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.37 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.35 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.35 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.33 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 98.32 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.31 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.3 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.27 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.27 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.26 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.25 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.24 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.17 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.12 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.11 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.11 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 98.1 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.09 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.05 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.04 | |
| PRK10115 | 686 | protease 2; Provisional | 98.04 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.04 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.04 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.04 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.03 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.01 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 97.98 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.97 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 97.97 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.97 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.94 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.9 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.9 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 97.84 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.82 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.81 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.81 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.8 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.8 | |
| PTZ00420 | 568 | coronin; Provisional | 97.79 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.79 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 97.78 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.75 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 97.7 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.68 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.66 | |
| PTZ00421 | 493 | coronin; Provisional | 97.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.65 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.64 | |
| PTZ00420 | 568 | coronin; Provisional | 97.61 | |
| PTZ00421 | 493 | coronin; Provisional | 97.57 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.54 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.54 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.5 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 97.45 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.44 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.42 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.41 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.37 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 97.35 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.29 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.23 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.22 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.21 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.18 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.17 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.13 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.11 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.09 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 97.08 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.08 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.07 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.07 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.02 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.01 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.96 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 96.94 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 96.93 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 96.92 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 96.92 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 96.9 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.88 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.87 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.85 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.85 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.85 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 96.84 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 96.82 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.82 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 96.8 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.77 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 96.75 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 96.67 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 96.67 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 96.65 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 96.62 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 96.61 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.6 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 96.56 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 96.55 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.52 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.49 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.49 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 96.46 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 96.44 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 96.42 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.4 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.37 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.37 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 96.35 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.31 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 96.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.25 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.25 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.24 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.21 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.19 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 96.15 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.14 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 96.11 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.06 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 96.06 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.05 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 96.03 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 96.02 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 95.94 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 95.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 95.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 95.89 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 95.79 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.77 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 95.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 95.74 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.71 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.63 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.62 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.59 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 95.44 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 95.4 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 95.36 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.34 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.32 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 95.3 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 95.27 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 95.25 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.2 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 95.12 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 95.0 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 94.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 94.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 94.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 94.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 94.85 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 94.75 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 94.72 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 94.65 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 94.58 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 94.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 94.43 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 94.42 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 94.38 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 94.37 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 94.36 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 94.29 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 94.13 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 93.93 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 93.91 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 93.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 93.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 93.83 | |
| PLN02209 | 437 | serine carboxypeptidase | 93.78 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 93.75 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 93.69 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 93.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 93.68 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 93.62 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 93.43 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 93.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.35 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 93.25 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 93.24 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 93.21 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 93.14 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 93.12 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 93.11 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 93.07 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 92.97 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 92.95 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 92.81 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 92.56 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 92.42 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 92.33 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 92.3 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 92.05 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 91.89 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 91.61 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 91.6 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 91.5 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 91.49 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 91.29 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 91.17 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 91.13 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.12 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 91.03 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 90.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 90.83 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 90.52 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 90.37 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 90.26 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 90.05 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 89.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 89.68 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 89.64 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 89.62 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 89.62 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 89.54 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 89.41 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 89.36 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 89.16 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 89.01 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 88.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 88.82 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 88.58 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 88.45 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 88.11 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 87.87 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 87.77 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 87.71 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 87.61 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.39 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 87.34 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 87.28 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 86.98 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 86.85 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 86.44 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 85.78 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 85.55 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 85.52 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 84.92 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 84.89 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 84.15 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 84.15 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 83.87 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 83.73 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 83.67 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 83.57 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 83.3 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 83.21 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 83.17 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 83.17 | |
| PLN02454 | 414 | triacylglycerol lipase | 83.1 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 82.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 82.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.23 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 81.99 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 81.84 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 81.7 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 81.51 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 81.35 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 81.14 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 81.11 | |
| PLN02408 | 365 | phospholipase A1 | 80.7 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 80.65 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 80.6 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 80.23 |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-115 Score=912.27 Aligned_cols=644 Identities=32% Similarity=0.554 Sum_probs=602.4
Q ss_pred CCCCC--cccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEE
Q 004866 1 MSSLN--DKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRR 78 (726)
Q Consensus 1 ~~~~~--~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~ 78 (726)
|||.+ +| +|++||+|||+||+++|+++++||++|++||++|+++++.|+|.++|+|+||+|+..|++|+++||.
T Consensus 30 lRd~~~~~p----~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~~~~~~~Yy~r~~~g~~y~~~~R~ 105 (682)
T COG1770 30 LRDDNWSNP----EVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQ 105 (682)
T ss_pred hhCCcccCh----HHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCccccCCeeEEEEecCCCcceeEEec
Confidence 57766 88 9999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC
Q 004866 79 LVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG 158 (726)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg 158 (726)
...+ ...|++|||+|+++.+++ |++++.+++|||+++|||+.|..|+|++.|.++|++||
T Consensus 106 ~~~g-------------------~~~eevlLD~n~~A~g~~-f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg 165 (682)
T COG1770 106 PDEG-------------------GEGEEVLLDVNKEAEGHD-FFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATG 165 (682)
T ss_pred cCCC-------------------CCceeEeecchhccCccc-ceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccc
Confidence 6532 125899999999999988 99999999999999999999999999999999999999
Q ss_pred ceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC
Q 004866 159 ALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFST 237 (726)
Q Consensus 159 ~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~ 237 (726)
+.+.....+...+++|.+|+++|||++.++..++.+||+|.++++. .+++||+|.|+.|++++..|.+.+||++..++.
T Consensus 166 ~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~ 245 (682)
T COG1770 166 EELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSH 245 (682)
T ss_pred cccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCC
Confidence 9888766666789999999999999999998899999999999976 889999999999999999999999999999999
Q ss_pred CceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCc
Q 004866 238 TSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGL 317 (726)
Q Consensus 238 ~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 317 (726)
.++++++++.+.+...++.+.++..+++|.++|.++.||+.+|..+ .||+|++.++ .++.+.|+.++++.++.
T Consensus 246 ~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~g-----knf~l~~ap~--~~~~~~w~~~I~h~~~~ 318 (682)
T COG1770 246 ITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADG-----KNFKLVRAPV--SADKSNWRELIPHREDV 318 (682)
T ss_pred cceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCC-----cceEEEEccC--CCChhcCeeeeccCCCc
Confidence 9999999999999888999999999999999999999999999876 3899999998 45678999999999999
Q ss_pred eEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCC
Q 004866 318 VVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMP 397 (726)
Q Consensus 318 ~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P 397 (726)
.|+++.+++++||+.++.+|.+++++.+..+++ .+.|.+++..++...+.+..++++.+++.++|+++|
T Consensus 319 ~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~-----------~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP 387 (682)
T COG1770 319 RLEGVDLFADHLVLLERQEGLPRVVVRDRKTGE-----------ERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTP 387 (682)
T ss_pred eeeeeeeeccEEEEEecccCCceEEEEecCCCc-----------eeeEEecchhhhccccCCCCCCCccEEEEeeccccc
Confidence 999999999999999999999999999876543 234777777666666778899999999999999999
Q ss_pred ceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEEEEEEECCCCcE
Q 004866 398 DAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477 (726)
Q Consensus 398 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~ 477 (726)
.++|.+|+.+++.++|++++++.. | + ++.|..+++|+++.||++
T Consensus 388 ~~~~~~dm~t~er~~LkqqeV~~g--------~---------------------d-------p~~Y~s~riwa~a~dgv~ 431 (682)
T COG1770 388 ATLFDYDMATGERTLLKQQEVPGG--------F---------------------D-------PEDYVSRRIWATADDGVQ 431 (682)
T ss_pred ceeEEeeccCCcEEEEEeccCCCC--------C---------------------C-------hhHeEEEEEEEEcCCCcE
Confidence 999999999999999999988532 2 4 789999999999999999
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHH
Q 004866 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDF 557 (726)
Q Consensus 478 i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~ 557 (726)
||++|++.++.+.+++.||+|++||+||.++.+.|+.....|++||++.+++|+||+|+.|+.||++|+...|.++|.||
T Consensus 432 VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DF 511 (682)
T COG1770 432 VPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDF 511 (682)
T ss_pred eeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhH
Q 004866 558 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDD 637 (726)
Q Consensus 558 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 637 (726)
++|+++|++++++++++|+++|+|+||+|+++++++.|++|+++|+.+||+|++++|+++++|++..+|.|||+|.+++.
T Consensus 512 Ia~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~ 591 (682)
T COG1770 512 IAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEY 591 (682)
T ss_pred HHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccccccCCCCCeEEEEecC-CCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCc-hhhHHHHH
Q 004866 638 FHAIRNYSPYDNIQKDVLYPAVLVTSSF-NTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEEN-RYLQCKES 713 (726)
Q Consensus 638 ~~~~~~~sp~~~i~~~~~~P~lli~g~~-D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~-~~~~~~~~ 713 (726)
+++|++|||+.||.+ ..+|++|+.+|. |+||.+||+.||+++||+.+++ .+|+++ .|++||++.+ +...+++.
T Consensus 592 y~yikSYSPYdNV~a-~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td--~~plLlkt~M~aGHgG~SgRf~~lee~ 668 (682)
T COG1770 592 YDYIKSYSPYDNVEA-QPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTD--GNPLLLKTNMDAGHGGASGRFQRLEEI 668 (682)
T ss_pred HHHHhhcCchhcccc-CCCCceEEEccccCCccccchHHHHHHHHhhcccC--CCcEEEEecccccCCCCCCchHHHHHH
Confidence 999999999999998 799999988887 5999999999999999999876 368888 7999999988 99999999
Q ss_pred HHHHHHHHHhhc
Q 004866 714 ALETAFLIKMME 725 (726)
Q Consensus 714 ~~~~~fl~~~l~ 725 (726)
|.+|+|+.+.++
T Consensus 669 A~eYaF~l~~~~ 680 (682)
T COG1770 669 AFEYAFLLKLAG 680 (682)
T ss_pred HHHHHHHhhhcc
Confidence 999999998875
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-98 Score=847.47 Aligned_cols=645 Identities=26% Similarity=0.432 Sum_probs=558.2
Q ss_pred CCCC--CcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEE
Q 004866 1 MSSL--NDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRR 78 (726)
Q Consensus 1 ~~~~--~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~ 78 (726)
|||. ++| +|++||++||+||+++|++++++|++|++||+++++.+++++|.+.|+|+||.+..+|.+++++||+
T Consensus 26 Led~~r~~~----~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~g~~~~~~~r~ 101 (686)
T PRK10115 26 LRDDTRSQP----EVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQ 101 (686)
T ss_pred hhCCCCCCH----HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEECCEEEEEEEcCCCccEEEEEe
Confidence 5664 367 9999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred ecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC
Q 004866 79 LVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG 158 (726)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg 158 (726)
....+ ..+.|++|||+|+++.+++ ++.++.+.|||||++|||+.|..|+|+++|+++|+++|
T Consensus 102 ~~~~~-----------------~~~~~~~llD~n~~a~~~~-~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg 163 (686)
T PRK10115 102 SAFSE-----------------EWDEWETLLDANKRAAHSE-FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG 163 (686)
T ss_pred cCCCC-----------------CCCCCEEEEcchhhccCCC-cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC
Confidence 64210 0145899999999987765 99999999999999999999999999999999999999
Q ss_pred ceeccccccccceeEEecCCCEEEEEEecCC-CCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 159 ALCSKPQAVRVSNIAWAKDGQALIYVVTDQN-KRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 159 ~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~-~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
+.+..........++|++|++.|+|++.++. .++.+||+|+++++. ++++++++.+..+++....+.|++++++.+.+
T Consensus 164 ~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~ 243 (686)
T PRK10115 164 NWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS 243 (686)
T ss_pred CCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC
Confidence 8655433332256999999999999988653 578999999999997 78899998888777777778899999998888
Q ss_pred CCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCC
Q 004866 237 TTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQG 316 (726)
Q Consensus 237 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 316 (726)
..+++++++++..+.+.++++.++..+..+.+.+.++.||+.+|.+++ +++|+++++. + ..+|+.|+++.++
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~-----~~~l~~~~~~-~--~~~~~~l~~~~~~ 315 (686)
T PRK10115 244 ATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGK-----NFGLYRTRVR-D--EQQWEELIPPREN 315 (686)
T ss_pred CccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCC-----CceEEEecCC-C--cccCeEEECCCCC
Confidence 888899999865443556677777777788888888999999997653 6899999986 3 3689999988777
Q ss_pred ceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCC
Q 004866 317 LVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVM 396 (726)
Q Consensus 317 ~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~ 396 (726)
..|+++.+++++|++..+++|.++++++++.++. ...++++........+.+.+++++.++++++|+++
T Consensus 316 ~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~ 384 (686)
T PRK10115 316 IMLEGFTLFTDWLVVEERQRGLTSLRQINRKTRE-----------VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTT 384 (686)
T ss_pred CEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCc-----------eEEecCCCCceEeeecccCCCCCceEEEEEecCCC
Confidence 8899999999999999999999999999875321 12233322211112234445778889999999999
Q ss_pred CceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEEEEEEECCCCc
Q 004866 397 PDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGI 476 (726)
Q Consensus 397 P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~ 476 (726)
|+++|.+|+.+++.+.++..+++. ++ +..+.+|++++++.||+
T Consensus 385 P~~~y~~d~~~~~~~~l~~~~~~~------------------------------~~-------~~~~~~e~v~~~s~DG~ 427 (686)
T PRK10115 385 PDTLFELDMDTGERRVLKQTEVPG------------------------------FD-------AANYRSEHLWITARDGV 427 (686)
T ss_pred CCEEEEEECCCCcEEEEEecCCCC------------------------------cC-------ccccEEEEEEEECCCCC
Confidence 999999999999888887654320 12 45679999999999999
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHH
Q 004866 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKD 556 (726)
Q Consensus 477 ~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D 556 (726)
+||++|+++++...+++.|+||++||||+.++.+.|+...+.|+++||+|+++|+|||||||++|+++++..++.++++|
T Consensus 428 ~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D 507 (686)
T PRK10115 428 EVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFND 507 (686)
T ss_pred EEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHH
Confidence 99999999887555677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChh
Q 004866 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDID 636 (726)
Q Consensus 557 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 636 (726)
+++|++||++++++|++||+|+|+|+||+|++++++++|++|+|+|+.+|++|+.++|.++++|++..++.+||+|++++
T Consensus 508 ~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~ 587 (686)
T PRK10115 508 YLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQ 587 (686)
T ss_pred HHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999998888898888899999999888
Q ss_pred HHHHHHhcCcccccccCCCCCeE-EEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCc-hhhHHHH
Q 004866 637 DFHAIRNYSPYDNIQKDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEEN-RYLQCKE 712 (726)
Q Consensus 637 ~~~~~~~~sp~~~i~~~~~~P~l-li~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~-~~~~~~~ 712 (726)
.+++|+++||++|+++ +++|+| ++||..|+|||++|+.+|+++|++++++ .+++++ .+++||++.. +...+++
T Consensus 588 ~~~~l~~~SP~~~v~~-~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~--~~~vl~~~~~~~GHg~~~~r~~~~~~ 664 (686)
T PRK10115 588 YYEYMKSYSPYDNVTA-QAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTD--DHLLLLCTDMDSGHGGKSGRFKSYEG 664 (686)
T ss_pred HHHHHHHcCchhccCc-cCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCC--CceEEEEecCCCCCCCCcCHHHHHHH
Confidence 8999999999999998 899965 5588889999999999999999999875 366766 5899998766 8899999
Q ss_pred HHHHHHHHHHhhcC
Q 004866 713 SALETAFLIKMMES 726 (726)
Q Consensus 713 ~~~~~~fl~~~l~~ 726 (726)
.|++++||.++|+.
T Consensus 665 ~A~~~aFl~~~~~~ 678 (686)
T PRK10115 665 VAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999874
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-94 Score=743.92 Aligned_cols=658 Identities=42% Similarity=0.661 Sum_probs=559.5
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEEec
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRRLV 80 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~~ 80 (726)
|||.++. ++..||++||.||+++|++++..+ +|+.||+.|++++.+++|.|+|+|+||.++.+|+||+.+||+..
T Consensus 31 l~d~d~~----~~~~fv~~en~~t~~vl~~~e~~~-kl~~em~~~i~ye~~~~p~r~G~~yyY~~n~~lkq~vl~~rr~~ 105 (712)
T KOG2237|consen 31 LEDPDDT----EMKEFVEAENKYTDAVLEDTETKE-KLFSEMTKRIDYEIITPPLRWGPWYYYFYNTGLKQYVLYCRRLL 105 (712)
T ss_pred hcCCcHH----HHHHHHHHhhhhhHHHHhccHHHH-HHHHHhhhccCccccCCccccCCEEEEEEcCCceehhHHHHhhh
Confidence 4554444 899999999999999999997777 99999999999999999999999999999999999999999876
Q ss_pred CCc-cccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc
Q 004866 81 SLN-EEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA 159 (726)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~ 159 (726)
..+ .-+.++. . .....+|+||.|+++++++ |+..+-.+.|||.++|||..+..|+|.+++ |.++...+
T Consensus 106 ~~e~~~~ld~~---~------~~dd~tV~Ld~~~~aed~~-Y~~~gls~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~ 174 (712)
T KOG2237|consen 106 EKEEEVFLDPN---A------LGDDGTVLLDTNQIAEDFK-YFAYGLSESSPDHKYIAYTKDTEGKELFTV-VIDVKFSG 174 (712)
T ss_pred hcccceecCCc---c------CCCCceEEechhhhhhcCC-ceEEeecccCCCceEEEEEEcCCCCcccee-eeeeccCC
Confidence 221 1222111 1 1134569999999999987 999988889999999999999999999998 99999888
Q ss_pred eeccccccccceeEEec-CCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC
Q 004866 160 LCSKPQAVRVSNIAWAK-DGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFST 237 (726)
Q Consensus 160 ~~~~~~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~ 237 (726)
++......++..++|.. ||..|.|...+..+++.+||+|.+|+.+ +|++++++.|+++++...-..|+++..+.+.+.
T Consensus 175 ~~~~~~~~g~~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~~~~i~si~~ 254 (712)
T KOG2237|consen 175 PVWTHDGKGVSYLAWAKQDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSGFYTINSISE 254 (712)
T ss_pred ceeeccCCceEeeeecccCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCceEEEEEeec
Confidence 77654566888999998 9999999989999999999999999997 999999999999988888788887777777655
Q ss_pred Cc---eEEEEEeCCCCCCCeEE-eeccCCceEEeee------ecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCc
Q 004866 238 TS---SKVFLINAADPFSGLTL-IWECEGLAHCIVE------HHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW 307 (726)
Q Consensus 238 ~~---~~l~~~d~~~~~~~~~~-l~~~~~~~~~~~~------~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 307 (726)
+. +.+|.+|+..+...++. +.++..++.++++ ..+..+++++|...+ ++++.++++. .+....|
T Consensus 255 t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~~p-----~y~l~r~~~~-~~~~~~W 328 (712)
T KOG2237|consen 255 TCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFVEHYDFITNEGTEFYFLTNKDAP-----NYYLLRIDVK-EPEESKW 328 (712)
T ss_pred cCCccceEEEEecccccCCcchheeeccchhhhhhhhhhheeccCcceeeeccCCCC-----ceeEEeeecc-Ccccccc
Confidence 54 59999999876555553 6677666655544 445889999997764 5999999998 7767899
Q ss_pred eEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEE-EecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcE
Q 004866 308 ESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCS-VSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSST 386 (726)
Q Consensus 308 ~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 386 (726)
+.++.+.+...++++.++++++++.....+...+.. .++ +.+..++.+++|.+.++..++ +++++.
T Consensus 329 ~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~----------l~g~~~~~fpLpv~sv~~~~g---~~~~~~ 395 (712)
T KOG2237|consen 329 ETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDL----------LDGSLLRSFPLPVGSVSGTSG---DFKSST 395 (712)
T ss_pred ceeecccchhhhhhhhhhcCceEEEEEecCchhhcccccc----------ccCceeeeecCCCCccccccc---CCCCce
Confidence 999998888889999999888777777766654442 222 122345678899876655443 788999
Q ss_pred EEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEE
Q 004866 387 MRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCE 466 (726)
Q Consensus 387 ~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (726)
++|.++|+.+|+.||.||+.++..+ +++..+. +. .-||.+ .+.|+++
T Consensus 396 ~~f~~sS~l~P~~iy~yDl~~~~~e----~~vf~e~-~~---------------------------~lpg~~-~s~y~~~ 442 (712)
T KOG2237|consen 396 IRFQFSSFLTPGSIYDYDLANGKPE----PSVFREI-TV---------------------------VLPGFD-ASDYVVE 442 (712)
T ss_pred EEEEEeccCCCCeEEEeeccCCCCC----Ccceeee-cc---------------------------ccCccc-ccceEEE
Confidence 9999999999999999999988542 1221110 00 002222 5689999
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
+++++|.||++||++|++.++.+.+++.|++||+||||+..+++.|+.....|+++|++.+.+|+||+|++|.+||+.|+
T Consensus 443 r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~ 522 (712)
T KOG2237|consen 443 RIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGR 522 (712)
T ss_pred EEEEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccc
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhh
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADY 626 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~ 626 (726)
..++.|.++||++|++||+++|++.|+|+++.|+|+||++++++++++|+||+|+|+.+||+|+++++.++..|++...|
T Consensus 523 lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ 602 (712)
T KOG2237|consen 523 LAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDY 602 (712)
T ss_pred hhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecC-CCCcChHHHHHHHHHHHhcCCCCCC--CcEEE--EcCCCC
Q 004866 627 EEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSF-NTRFGVWEAAKWVARVRESTIYDPK--RPILL--NLTTDI 701 (726)
Q Consensus 627 ~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~-D~~V~~~~~~~~~~~L~~~~~~~~~--~~~~~--~~~~gH 701 (726)
.+||+|.+.+.+-.|.+|||++++.++..+|.++|++.. |+||+++++.+|+++||++..+.+. +|+++ ++++||
T Consensus 603 ee~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH 682 (712)
T KOG2237|consen 603 EEWGNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGH 682 (712)
T ss_pred cccCChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCcc
Confidence 999999877777888899999999986679988887776 5999999999999999998766555 78988 899999
Q ss_pred CCCc-hhhHHHHHHHHHHHHHHhhcC
Q 004866 702 VEEN-RYLQCKESALETAFLIKMMES 726 (726)
Q Consensus 702 ~~~~-~~~~~~~~~~~~~fl~~~l~~ 726 (726)
+... +..++++.++.++||.+.+++
T Consensus 683 ~~~~~~~k~~~E~a~~yaFl~K~~~~ 708 (712)
T KOG2237|consen 683 GAEKPRFKQIEEAAFRYAFLAKMLNS 708 (712)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhcC
Confidence 9766 899999999999999999875
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-69 Score=560.40 Aligned_cols=620 Identities=24% Similarity=0.324 Sum_probs=472.4
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEE-EEEEe
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLV-LCRRL 79 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~-~~r~~ 79 (726)
|||++++ |+++|+++||+-|..+|... +-++.+.+++.+.+..++.++|...|+++|...+.. .|+. +||+.
T Consensus 9 lEd~~~~----eal~wv~~~N~~t~~~L~~~-~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~--~~p~Glwr~t 81 (648)
T COG1505 9 LEDLDSA----EALKWVEAQNAKTREFLGED-SARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDA--LYPRGLYRRT 81 (648)
T ss_pred hhcCCcH----HHHHHHHhhhhHHHHHhhcc-hhhHHHHHHHHHHhhccccCcceeccceeEEeeccc--cCcceeEEee
Confidence 7888999 99999999999999999998 788889999999999999999999988877765543 3433 56654
Q ss_pred cCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc
Q 004866 80 VSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA 159 (726)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~ 159 (726)
.-. + .....+..+||+|.++++...+-...+++.+.+||+++++|+.+.+|++...++++|++||+
T Consensus 82 tl~-s-------------yrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~ 147 (648)
T COG1505 82 TLE-T-------------YRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGE 147 (648)
T ss_pred cce-e-------------ecccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEecccc
Confidence 211 0 00113677999999999877543567788888899999999999999999999999999998
Q ss_pred eeccccccccceeEEecCCCEEEEEEecCCC------CC---ceEEEEEcCCCC-ceeEEeeecCC-ceEEEEEEcCCCc
Q 004866 160 LCSKPQAVRVSNIAWAKDGQALIYVVTDQNK------RP---YQIYCSIIGSTD-EDALLLEESNE-NVYVNIRHTKDFH 228 (726)
Q Consensus 160 ~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~------~~---~~l~~~~l~t~~-~~~lv~~~~d~-~~~~~~~~s~Dg~ 228 (726)
.+... .-....+.|.+++ .++|.+..... -+ ..++++.+.+++ .++.|+...+- .++..+.++.|++
T Consensus 148 fv~~~-~f~~~~~~wld~d-~~~~~~~~~~~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~ 225 (648)
T COG1505 148 FVEEE-GFKFPGISWLDDD-GVFVSRYWRPKEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGD 225 (648)
T ss_pred cccCC-CccccceEEecCC-CEEEecccCCcccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccc
Confidence 76542 1223348999988 67776554311 11 245666677776 67777654321 1222344555666
Q ss_pred EEEEEEcCCCc--eEEEEEeCCCCCC-CeEE-eeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCC
Q 004866 229 FVCVHTFSTTS--SKVFLINAADPFS-GLTL-IWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPS 304 (726)
Q Consensus 229 ~l~~~~~~~~~--~~l~~~d~~~~~~-~~~~-l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (726)
+++....-... ..++ +++-+..+ .... +..-..+ .-..+.+.+.|++.+.... ..
T Consensus 226 ~f~~~~~~~~~~~~~~~-l~~p~~~~~~~~~l~~~~r~d-w~~~~~~~g~l~l~~~e~~-------------------~~ 284 (648)
T COG1505 226 FFMLSLWLGTSGKGLIK-LGLPDKVGYEWGKLVNTLRAD-WTFADVDYGLLYLLTDEDL-------------------EL 284 (648)
T ss_pred hhhheeeEeccCCCcee-ccCCccccceeeeeeEeeccc-ccccCcccceEEEEehhcc-------------------cc
Confidence 55433322111 1222 22211000 0000 0000000 0001112233333332211 11
Q ss_pred CCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCC
Q 004866 305 RTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYS 384 (726)
Q Consensus 305 ~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 384 (726)
+.-..++.+.+...++.+...++++++...++...++.++++.. +.. .++++|... .+... +.+.++
T Consensus 285 g~~~a~~~P~~~~~le~v~tt~~~~va~~l~nv~~~l~v~~~~g------~~~-----~~v~l~~~g-a~~~~-~~~~~g 351 (648)
T COG1505 285 GKVIAEFIPEEEQSLEQVVTTKDKLVAGTLDNVSGRLEVYDLKG------ERI-----EEVELPPPG-ALGMG-SADKDG 351 (648)
T ss_pred CceeEEecCCcccceeeeEEEcCeEEeeeehhccceEEEeccCc------eEe-----eecccCCcc-ceeec-cCCCCC
Confidence 11222455667788999999999999999999988888887642 222 245555421 11112 346789
Q ss_pred cEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCce
Q 004866 385 STMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYS 464 (726)
Q Consensus 385 ~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (726)
+.+.+.++|+++|+.+|+++..+++++.++.+.+. || .+.+.
T Consensus 352 ~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-------------------------------FD-------a~~~~ 393 (648)
T COG1505 352 DEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-------------------------------FD-------ADNYE 393 (648)
T ss_pred cEEEEEeecccCCCceEEEecCCceehhhhhccCC-------------------------------cC-------ccCce
Confidence 99999999999999999999999999888766542 24 67899
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
+|+.+.+|.||++||++|++ |+.+.+ +.|++||.|||+.....|.|+..+..|+++|.+.+++|+||+||||.+||++
T Consensus 394 veQ~~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~A 471 (648)
T COG1505 394 VEQFFATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQA 471 (648)
T ss_pred EEEEEEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHH
Confidence 99999999999999999999 887777 8999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChh
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAA 624 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~ 624 (726)
+.+.++++.++||+|+++.|++++++.|.+|||.|+|.||+|+.++++|+|++|.|+|+.+|++||++ ++.++.+..
T Consensus 472 a~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlR---Yh~l~aG~s 548 (648)
T COG1505 472 GMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLR---YHLLTAGSS 548 (648)
T ss_pred HhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhh---hcccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 455677788
Q ss_pred hhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecC-CCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCC
Q 004866 625 DYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSF-NTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDI 701 (726)
Q Consensus 625 ~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~-D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH 701 (726)
|..|||+|.+++++..+.+|||++|++...++|+.||+.+. |+||+|.|+++|+++|++++ .|+++ .-++||
T Consensus 549 W~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~-----~pv~~~e~t~gGH 623 (648)
T COG1505 549 WIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVG-----APVLLREETKGGH 623 (648)
T ss_pred hHhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcC-----CceEEEeecCCcc
Confidence 99999999999999999999999999987899988887765 79999999999999999998 35666 568999
Q ss_pred CCCc-hhhHHHHHHHHHHHHHHhhc
Q 004866 702 VEEN-RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 702 ~~~~-~~~~~~~~~~~~~fl~~~l~ 725 (726)
++.+ ....+.+.+..++||.++|+
T Consensus 624 ~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 624 GGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred cCCCChHHHHHHHHHHHHHHHHhhC
Confidence 9877 66778899999999999985
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=431.55 Aligned_cols=374 Identities=29% Similarity=0.481 Sum_probs=307.2
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEEec
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRRLV 80 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~~ 80 (726)
|||.++| +|++||++||+||+++|+++++++++|++||++++..+..++|.+.|+|+||.+..++++|+++||+..
T Consensus 25 Led~~~~----~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~ 100 (414)
T PF02897_consen 25 LEDDDSP----EVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGGYYYYSRNQGGKNYPVLYRRKT 100 (414)
T ss_dssp GGSTTSH----HHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETTEEEEEEE-SS-SS-EEEEEET
T ss_pred hcCCCCH----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECCeEEEEEEcCCCceEEEEEEec
Confidence 7888888 999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce
Q 004866 81 SLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~ 160 (726)
... ....+++|||+|+++.+++ ++.++.+++||||++|||+.+.+|+|.++|+|+|+++|+.
T Consensus 101 ~~~-----------------~~~~~evllD~n~l~~~~~-~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 101 DEE-----------------DGPEEEVLLDPNELAKDGG-YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp TS------------------TS-C-EEEEEGGGGSTTSS--EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred ccC-----------------CCCceEEEEcchHhhccCc-eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 410 0123599999999999865 8888899999999999999999999999999999999988
Q ss_pred eccccc-cccceeEEecCCCEEEEEEecCCCC------CceEEEEEcCCCC-ceeEEeeecCCce-EEEEEEcCCCcEEE
Q 004866 161 CSKPQA-VRVSNIAWAKDGQALIYVVTDQNKR------PYQIYCSIIGSTD-EDALLLEESNENV-YVNIRHTKDFHFVC 231 (726)
Q Consensus 161 ~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~------~~~l~~~~l~t~~-~~~lv~~~~d~~~-~~~~~~s~Dg~~l~ 231 (726)
+..... .....+.|++||+.|||++.+...+ +.+||+|++|++. ++.+||++.+..+ ++++.+|+||++|+
T Consensus 163 l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 163 LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF 242 (414)
T ss_dssp EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred cCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence 765442 3344499999999999999887666 8999999999998 7799999999888 88999999999999
Q ss_pred EEEcCCCc-eEEEEEeCCCC---CCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCc
Q 004866 232 VHTFSTTS-SKVFLINAADP---FSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW 307 (726)
Q Consensus 232 ~~~~~~~~-~~l~~~d~~~~---~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 307 (726)
+.+.++.+ +++|++|+..+ ...++++.++..+..+.+.+.|+.||++||.+.+ +++|++++++ .+....|
T Consensus 243 i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~-----~~~l~~~~l~-~~~~~~~ 316 (414)
T PF02897_consen 243 ISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAP-----NGRLVAVDLA-DPSPAEW 316 (414)
T ss_dssp EEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-T-----T-EEEEEETT-STSGGGE
T ss_pred EEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCC-----CcEEEEeccc-ccccccc
Confidence 99998888 99999999874 4578999999999999999999999999997653 6999999998 6655567
Q ss_pred e-EEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC-CCCCCcceeecccccccccCCCceeeeecCCCCcCCCc
Q 004866 308 E-SVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP-LPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSS 385 (726)
Q Consensus 308 ~-~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 385 (726)
. .++++.++..++++..++++||+..+++|.++|.++++. +. ....+++|.. +++. +.+.+++++
T Consensus 317 ~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~-----------~~~~~~~p~~-g~v~-~~~~~~~~~ 383 (414)
T PF02897_consen 317 WTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK-----------ESREIPLPEA-GSVS-GVSGDFDSD 383 (414)
T ss_dssp EEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE-----------EEEEEESSSS-SEEE-EEES-TT-S
T ss_pred eeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc-----------EEeeecCCcc-eEEe-ccCCCCCCC
Confidence 7 566666667899999999999999999999999999986 21 1235666653 2222 345678899
Q ss_pred EEEEEEccCCCCceEEEEECCCCeEEEEEe
Q 004866 386 TMRFAISSPVMPDAVVDYDLSYGKWNIIQQ 415 (726)
Q Consensus 386 ~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~ 415 (726)
.++|.++|+++|+.+|.||+++++.+++++
T Consensus 384 ~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 384 ELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred EEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 999999999999999999999999998875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=422.62 Aligned_cols=524 Identities=17% Similarity=0.176 Sum_probs=357.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCC----C---------
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN----K--------- 190 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~----~--------- 190 (726)
+..+.|||||+.+++.. ..+....++|+.+.. | .............|+|+|+.+.+...... .
T Consensus 62 ~~~~~~spdg~~~~~~~-~~~~~~~~l~l~~~~-g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (620)
T COG1506 62 VSELRWSPDGSVLAFVS-TDGGRVAQLYLVDVG-G--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRL 137 (620)
T ss_pred ccccccCCCCCEEEEEe-ccCCCcceEEEEecC-C--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeeccc
Confidence 55678999999999987 345556789999988 5 11112345678899999999998322111 0
Q ss_pred ---------CCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC----ceEEEEEeCCCCCCCeEEe
Q 004866 191 ---------RPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT----SSKVFLINAADPFSGLTLI 257 (726)
Q Consensus 191 ---------~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~----~~~l~~~d~~~~~~~~~~l 257 (726)
....+|+.+..+ ... .... .........+..+++.++....... ....++....+ +.+..+
T Consensus 138 ~~~~~~~g~~~~~l~~~d~~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 211 (620)
T COG1506 138 PVWFDGRGGERSDLYVVDIES-KLI--KLGL-GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGN--GELESL 211 (620)
T ss_pred ceeecCCCCcccceEEEccCc-ccc--cccC-CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCC--CceEEE
Confidence 112233333322 000 0001 1112234555666666655554332 12333333323 444455
Q ss_pred eccCCc-eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec-C--C-CceEEEEeeeCCEEEEE
Q 004866 258 WECEGL-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID-D--Q-GLVVEDVDFCKTHMALI 332 (726)
Q Consensus 258 ~~~~~~-~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~--~-~~~l~~~~~~~~~lv~~ 332 (726)
.+.... ....+..+|+.+++..+..... ...+..++..+.. . ......... + . ...+... ..++.+++.
T Consensus 212 ~~~~~~~~~~~~~~~gk~~~~~~~~~~~~-~~~~~~~~~~~~~-~---~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 285 (620)
T COG1506 212 TPGEGSISKLAFDADGKSIALLGTESDRG-LAEGDFILLLDGE-L---GEVDGDLSSGDDTRGAWAVEGG-LDGDGLLFI 285 (620)
T ss_pred cCCCceeeeeeeCCCCCeeEEeccCCccC-ccccceEEEEecc-c---cccceeeccCCcccCcHHhccc-cCCCcEEEE
Confidence 544332 3345567888888887754321 1122333333311 0 000000011 0 0 0111111 344566666
Q ss_pred EEe-CCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 333 LRE-GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 333 ~~~-~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
... .|...+...+..... ...+..+.. .+. + ++.+++.+++.++++..|+++|.++. ++..
T Consensus 286 ~~~~~g~~~l~~~~~~~~~-----------~~~~~~~~~--~v~-~--f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~ 347 (620)
T COG1506 286 ATDGGGSSPLFRVDDLGGG-----------VEGLSGDDG--GVP-G--FDVDGRKLALAYSSPTEPPEIYLYDR--GEEA 347 (620)
T ss_pred EecCCCceEEEEEeccCCc-----------eeeecCCCc--eEE-E--EeeCCCEEEEEecCCCCccceEEEcC--CCce
Confidence 655 555555554422110 011222211 111 2 23488999999999999999999987 3323
Q ss_pred EEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCC
Q 004866 412 IIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKE 491 (726)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~ 491 (726)
.+..... .++......++|.+++++.||.+|++|++.|+++.+.
T Consensus 348 ~~~~~~~------------------------------------~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~ 391 (620)
T COG1506 348 KLTSSNN------------------------------------SGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPR 391 (620)
T ss_pred EEeeccc------------------------------------ccccccccCCceEEEEEcCCCCEEEEEEecCCCCCCC
Confidence 3322211 1122256788999999999999999999999998888
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
+++|+||++||||..+....|....+.|+++||+|+.+|+||+++||++|.++..+.++..+++|+++++++|.+++.+|
T Consensus 392 k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d 471 (620)
T COG1506 392 KKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVD 471 (620)
T ss_pred CCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcC
Confidence 88999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccc
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ 651 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~ 651 (726)
++||+|+|+||||||+++++++.| +|+|+++..+.+++..++...+.++........+.+.. ..+.|.++||+.+++
T Consensus 472 ~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sp~~~~~ 548 (620)
T COG1506 472 PERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPE--DREKYEDRSPIFYAD 548 (620)
T ss_pred hHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCCCccc--ChHHHHhcChhhhhc
Confidence 999999999999999999999876 89999999999988876555444433222222233332 456789999999999
Q ss_pred cCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhcC
Q 004866 652 KDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMMES 726 (726)
Q Consensus 652 ~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 726 (726)
+ +++|+|||||..|.|||++|+++|+++|+.+|++ +.+ +|++||++....++.+.....++|+.++|+.
T Consensus 549 ~-i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~-----~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 549 N-IKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKP-----VELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred c-cCCCEEEEeecCCccCChHHHHHHHHHHHHcCce-----EEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 7 9999999999999999999999999999998854 333 8999999887778888888899999999863
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=293.27 Aligned_cols=298 Identities=19% Similarity=0.261 Sum_probs=233.8
Q ss_pred CCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCC
Q 004866 382 YYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSE 461 (726)
Q Consensus 382 ~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (726)
.+-+.++..++|...|+++..|.+..++-..+..+.... .++.+.+.. +++
T Consensus 559 ~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~-------------~~l~~~~~~----------------~Pd 609 (867)
T KOG2281|consen 559 QQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFW-------------AILVSGAPP----------------PPD 609 (867)
T ss_pred hhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHH-------------HHHHhcCCC----------------CCc
Confidence 334447778899999999999988877654443222110 112111111 144
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchH----HHHHHHHCCcEEEEEccCCCCC
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRS----ELKSLLDRGWVVAFADVRGGGG 536 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~----~~~~l~~~G~~v~~~d~RG~g~ 536 (726)
...+|.+.+.+.-|..+.+.|+.|.++++++|+|+++++||||+.+. ..+|.. ..+.|+++||+|+.+|-||+-.
T Consensus 610 y~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~h 689 (867)
T KOG2281|consen 610 YVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAH 689 (867)
T ss_pred cCChhheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccc
Confidence 55568888999889999999999999999999999999999999873 455643 4578999999999999999999
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc
Q 004866 537 GGKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 615 (726)
Q Consensus 537 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 615 (726)
.|..|....+...|..+++|.+.++++|+++ |++|.+||+|.||||||||++..+.++|++|++||+.+|+.+|..
T Consensus 690 RGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~--- 766 (867)
T KOG2281|consen 690 RGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRL--- 766 (867)
T ss_pred cchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeee---
Confidence 9999999999999999999999999999998 599999999999999999999999999999999999999999873
Q ss_pred CCCCCCChhhhcc--cCCCCChhHHHHHHhcCcccccccCCCCC--eEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCC
Q 004866 616 YPILPLIAADYEE--FGYPGDIDDFHAIRNYSPYDNIQKDVLYP--AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 616 ~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~sp~~~i~~~~~~P--~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 691 (726)
+++ .|.| +|.|...+ ..|.+-|-..++.+...-| +||+||-.|.+|.+.+...++.+|.++|++ -
T Consensus 767 YDT------gYTERYMg~P~~nE--~gY~agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagKp---y 835 (867)
T KOG2281|consen 767 YDT------GYTERYMGYPDNNE--HGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKP---Y 835 (867)
T ss_pred ecc------cchhhhcCCCccch--hcccchhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCCc---e
Confidence 222 2333 47775422 2344455555555422223 788999999999999999999999999964 1
Q ss_pred cEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 692 PILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.+.+||++-|+....+..+...++.+.||.+
T Consensus 836 eL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 836 ELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 2233899999877777777778888999875
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-29 Score=285.40 Aligned_cols=238 Identities=20% Similarity=0.271 Sum_probs=194.1
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCC-ccch--HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD-KRWR--SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~-~~~~--~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
||....+.++.|+++.+.+++|+|+++||||+++.- ..|. .....+..+|++|+.+|+||+|++|..+..+..++.|
T Consensus 506 ~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG 585 (755)
T KOG2100|consen 506 DGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLG 585 (755)
T ss_pred ccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcC
Confidence 899999999999999888999999999999985532 2232 2334566799999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCC-CceeEEEEeCCcccccccccCCCCCCChhhhcc-
Q 004866 551 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP-DLFRAVVLEVPFLDATNTLLYPILPLIAADYEE- 628 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p-~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~- 628 (726)
..+++|.+.+++++++.+++|++||+|+|+|+||||++.++...| +.|+|+++.+||+|+. + .+.. .-.+
T Consensus 586 ~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~-yds~------~tery 657 (755)
T KOG2100|consen 586 DVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-Y-YDST------YTERY 657 (755)
T ss_pred CcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-e-eccc------ccHhh
Confidence 999999999999999999999999999999999999999999887 8999999999999998 2 2221 1112
Q ss_pred cCCCCChhHHHHHHhcCcccccccCCCCCe-EEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchh
Q 004866 629 FGYPGDIDDFHAIRNYSPYDNIQKDVLYPA-VLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRY 707 (726)
Q Consensus 629 ~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~-lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (726)
.|.|.+.. ..+.+.++..++.. ++.|. ||+||..|++|+++|+.+++++|+.+|++. + +++||+++|+...+.
T Consensus 658 mg~p~~~~--~~y~e~~~~~~~~~-~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~--~-~~vypde~H~is~~~ 731 (755)
T KOG2100|consen 658 MGLPSEND--KGYEESSVSSPANN-IKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPF--R-LLVYPDENHGISYVE 731 (755)
T ss_pred cCCCcccc--chhhhccccchhhh-hccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCce--E-EEEeCCCCccccccc
Confidence 36665422 22677788877776 67776 899999999999999999999999999762 2 222899999987755
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 004866 708 LQCKESALETAFLIKMME 725 (726)
Q Consensus 708 ~~~~~~~~~~~fl~~~l~ 725 (726)
...........|+...++
T Consensus 732 ~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 732 VISHLYEKLDRFLRDCFG 749 (755)
T ss_pred chHHHHHHHHHHHHHHcC
Confidence 444455556788875553
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-32 Score=267.48 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=168.6
Q ss_pred ccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHH
Q 004866 510 KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 589 (726)
Q Consensus 510 ~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~ 589 (726)
++|+...+.|+++||+|+.+|+||+++||..|+..+.+.++...++|+++++++|++++.+|++||+|+|+|+||+++++
T Consensus 1 ~~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~ 80 (213)
T PF00326_consen 1 PSFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALL 80 (213)
T ss_dssp ---SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHH
T ss_pred CeeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccch
Confidence 35788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCC-ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCC
Q 004866 590 AINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG-DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTR 668 (726)
Q Consensus 590 ~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~ 668 (726)
++.++|++|+|+|+.+|++|+......... +...++.+++.+. .++.+..+..++++.++. ++.|+||+||..|.+
T Consensus 81 ~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~P~li~hG~~D~~ 157 (213)
T PF00326_consen 81 AATQHPDRFKAAVAGAGVSDLFSYYGTTDI-YTKAEYLEYGDPWDNPEFYRELSPISPADNVQ--IKPPVLIIHGENDPR 157 (213)
T ss_dssp HHHHTCCGSSEEEEESE-SSTTCSBHHTCC-HHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG--GGSEEEEEEETTBSS
T ss_pred hhcccceeeeeeeccceecchhcccccccc-cccccccccCccchhhhhhhhhcccccccccc--CCCCEEEEccCCCCc
Confidence 999999999999999999998876544332 2233566678774 333344444444444422 578999999999999
Q ss_pred cChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 669 FGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 669 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
||+.++.+++++|++++++ ..+++++++||++...........+.++||.++|+
T Consensus 158 Vp~~~s~~~~~~L~~~g~~---~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 158 VPPSQSLRLYNALRKAGKP---VELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp STTHHHHHHHHHHHHTTSS---EEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhcCCC---EEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 9999999999999999854 12222899999877655666888899999999986
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=187.08 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=149.9
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc-cccc--cCCCCcH
Q 004866 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH-DGRR--TKKLNSI 554 (726)
Q Consensus 478 i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~-~~~~--~~~~~~~ 554 (726)
+....+.|++. .+++.|+||++||..+.. ..|......|+++||.|+++|+||+|........ .... .......
T Consensus 12 ~~~~~~~p~~~-~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK10566 12 IEVLHAFPAGQ-RDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNM 88 (249)
T ss_pred cceEEEcCCCC-CCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHH
Confidence 44456677642 235689999999975543 3567778899999999999999998753111000 0000 0011356
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe-CCcccccccccCCCCCCChhhhcccCCCC
Q 004866 555 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE-VPFLDATNTLLYPILPLIAADYEEFGYPG 633 (726)
Q Consensus 555 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~-~p~~d~~~~~~~~~~~~~~~~~~~~g~~~ 633 (726)
+|+.++++++.+++.+|++||+++|+|+||++++.++.++|++.++++.. ++.+........+... ...+.
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 160 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLI--------PETAA 160 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhccccc--------ccccc
Confidence 78888999999988899999999999999999999999888765443322 2222111000000000 00011
Q ss_pred C----hhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-EcCCCCCCCchhh
Q 004866 634 D----IDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEENRYL 708 (726)
Q Consensus 634 ~----~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~~~~ 708 (726)
. .+....+..+++...+.+..+.|.|++||..|..||+.++.+++++|+.++++. +..++ ++++||+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~--~~~~~~~~~~~H~~~---- 234 (249)
T PRK10566 161 QQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDK--NLTCLWEPGVRHRIT---- 234 (249)
T ss_pred cHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCc--ceEEEecCCCCCccC----
Confidence 0 112233445566555655226899999999999999999999999999987531 22333 899999753
Q ss_pred HHHHHHHHHHHHHHhh
Q 004866 709 QCKESALETAFLIKMM 724 (726)
Q Consensus 709 ~~~~~~~~~~fl~~~l 724 (726)
......+.+||.++|
T Consensus 235 -~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 -PEALDAGVAFFRQHL 249 (249)
T ss_pred -HHHHHHHHHHHHhhC
Confidence 245677889999875
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=180.96 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=154.9
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCC-CCCCCccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGG-GGGGKKWH 542 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~-g~~g~~~~ 542 (726)
.+....+.+.||.+|.+|+..|++. ...+.|+||.+||--+.. ..|...+.+|+++||+|+.+|.||+ |+++..+.
T Consensus 8 ~~~~~~~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~ 84 (307)
T PRK13604 8 KTIDHVICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTID 84 (307)
T ss_pred cchhheEEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence 3444557889999999999998753 245678999999743322 3477788999999999999999987 88776664
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC-----
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP----- 617 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~----- 617 (726)
..... ....|+.++++||.++ +.++|++.|+||||.++..++.. + ..+++|+.+|+.++...+...
T Consensus 85 ~~t~s----~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~ 155 (307)
T PRK13604 85 EFTMS----IGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDY 155 (307)
T ss_pred cCccc----ccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhccc
Confidence 33221 1379999999999876 34689999999999998776664 3 389999999999965432210
Q ss_pred -CCCCChh-hhccc-CCCC-ChhHHHHHHh------cCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCC
Q 004866 618 -ILPLIAA-DYEEF-GYPG-DIDDFHAIRN------YSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIY 687 (726)
Q Consensus 618 -~~~~~~~-~~~~~-g~~~-~~~~~~~~~~------~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~ 687 (726)
.+|+... ....+ |.+. ....+....+ .+|+..+++ ++.|.|+|||..|+.||+.++.+++++++...
T Consensus 156 ~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~-l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~-- 232 (307)
T PRK13604 156 LSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKG-LDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQ-- 232 (307)
T ss_pred ccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhh-cCCCEEEEEcCCCCccCHHHHHHHHHHhccCC--
Confidence 0111000 00001 1111 0112222222 345566775 78999999999999999999999999987533
Q ss_pred CCCCcEEEEcCCCCCCCc
Q 004866 688 DPKRPILLNLTTDIVEEN 705 (726)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~ 705 (726)
..+.++++++|.+..
T Consensus 233 ---kkl~~i~Ga~H~l~~ 247 (307)
T PRK13604 233 ---CKLYSLIGSSHDLGE 247 (307)
T ss_pred ---cEEEEeCCCccccCc
Confidence 223338999997654
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=189.49 Aligned_cols=242 Identities=13% Similarity=0.046 Sum_probs=159.5
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
.+..+.+.++..||..|+++++.|+. +++.|+||+. ||.++.....|......|+++||+|+.+|+||+|.... +
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~---~~~~P~Vli~-gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~-~ 239 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG---DGPFPTVLVC-GGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK-W 239 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC---CCCccEEEEe-CCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC-C
Confidence 34678999999999899999998873 3567887765 45554333446667788999999999999999987532 1
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc--cCCCC
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--LYPIL 619 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~--~~~~~ 619 (726)
. ..........+++++|.+.+.+|++||+++|+|+||++++.++..+|++++++|+.+|+++..... .....
T Consensus 240 ~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~ 313 (414)
T PRK05077 240 K------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQV 313 (414)
T ss_pred C------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhc
Confidence 0 011122233578899999999999999999999999999999988899999999999987522100 00111
Q ss_pred CCC-h-hhhcccCCCC-C-hhHHHHHHhcCccc--ccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcE
Q 004866 620 PLI-A-ADYEEFGYPG-D-IDDFHAIRNYSPYD--NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPI 693 (726)
Q Consensus 620 ~~~-~-~~~~~~g~~~-~-~~~~~~~~~~sp~~--~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 693 (726)
|.. . .....+|.+. + ......+..++.-. .+.++++.|+|+|+|..|..||+.++..+.+..... +.+
T Consensus 314 p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~------~l~ 387 (414)
T PRK05077 314 PEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSADG------KLL 387 (414)
T ss_pred hHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCC------eEE
Confidence 110 0 0011234332 1 12223333443221 122237899999999999999999999877655432 233
Q ss_pred EEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 694 LLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 694 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
. .+++.| . ....+....+.+||.++|.
T Consensus 388 ~-i~~~~~-~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 388 E-IPFKPV-Y---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred E-ccCCCc-c---CCHHHHHHHHHHHHHHHhC
Confidence 3 466533 2 2334445567899998873
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=176.84 Aligned_cols=247 Identities=14% Similarity=0.073 Sum_probs=154.3
Q ss_pred CceEEEEEEEC-CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH-HHHHHHHCCcEEEEEccCCCC----
Q 004866 462 FYSCEQYDVPS-HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS-ELKSLLDRGWVVAFADVRGGG---- 535 (726)
Q Consensus 462 ~~~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~RG~g---- 535 (726)
....+.+++.| .-|..+++.+++|+. ..++++|+|+++||..+......... ..+.+...|++|++||..++|
T Consensus 15 ~~~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~ 93 (283)
T PLN02442 15 GGFNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVE 93 (283)
T ss_pred CCEEEEEEEeccccCCceEEEEEcCCc-ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCC
Confidence 34566666666 457789999999984 34568999999999766432111112 234555679999999986554
Q ss_pred --------CCCCccccc-ccccCCCCc-----HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEE
Q 004866 536 --------GGGKKWHHD-GRRTKKLNS-----IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAV 601 (726)
Q Consensus 536 --------~~g~~~~~~-~~~~~~~~~-----~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~ 601 (726)
++|..|+.. ....++... .+++...++... ..+|++|++|+|+||||++++.++.++|++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~ 171 (283)
T PLN02442 94 GEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSV 171 (283)
T ss_pred CCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhEEEE
Confidence 122222211 111111111 223322332222 2368899999999999999999999999999999
Q ss_pred EEeCCcccccccccCCCCCCChh-hhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChH-HHHHHHH
Q 004866 602 VLEVPFLDATNTLLYPILPLIAA-DYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVW-EAAKWVA 679 (726)
Q Consensus 602 v~~~p~~d~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~-~~~~~~~ 679 (726)
++.+|++|+... +.... .-..+|.+. +..+.+...+|+.++.. .+.|+++++|+.|..|+.. ++..|++
T Consensus 172 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~--~~~~~~d~~~~~~~~~~-~~~pvli~~G~~D~~v~~~~~s~~~~~ 242 (283)
T PLN02442 172 SAFAPIANPINC------PWGQKAFTNYLGSDK--ADWEEYDATELVSKFND-VSATILIDQGEADKFLKEQLLPENFEE 242 (283)
T ss_pred EEECCccCcccC------chhhHHHHHHcCCCh--hhHHHcChhhhhhhccc-cCCCEEEEECCCCccccccccHHHHHH
Confidence 999999885421 11111 111244432 23333444455556654 6789999999999999974 6899999
Q ss_pred HHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhcC
Q 004866 680 RVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMMES 726 (726)
Q Consensus 680 ~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 726 (726)
++++++.+ ....++++++|.+.. ......+.+.|..+++.|
T Consensus 243 ~l~~~g~~---~~~~~~pg~~H~~~~---~~~~i~~~~~~~~~~~~~ 283 (283)
T PLN02442 243 ACKEAGAP---VTLRLQPGYDHSYFF---IATFIDDHINHHAQALKS 283 (283)
T ss_pred HHHHcCCC---eEEEEeCCCCccHHH---HHHHHHHHHHHHHHHhcC
Confidence 99998853 112227899996432 111222445777666654
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=180.99 Aligned_cols=253 Identities=13% Similarity=0.071 Sum_probs=161.1
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
...+.+...+.+.||.+|++..+.|.+. ..+.|+||++||..... ...|......|+++||.|+.+|+||+|.+...
T Consensus 28 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~--~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~ 104 (330)
T PLN02298 28 KGIKGSKSFFTSPRGLSLFTRSWLPSSS--SPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGRSEGL 104 (330)
T ss_pred cCCccccceEEcCCCCEEEEEEEecCCC--CCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCCCCCc
Confidence 3455667788899999999987776542 13468999999974332 22345556778899999999999999976421
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC---
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP--- 617 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~--- 617 (726)
.+.........+|+.+++++|......+..+++|+|+||||.+++.++.++|++++++|+.+|+.++...+...
T Consensus 105 ---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 181 (330)
T PLN02298 105 ---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPI 181 (330)
T ss_pred ---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHH
Confidence 01001112346788888888876543445689999999999999999999999999999999976543211000
Q ss_pred ---------CCCCCh-hhhcc-cCCCCChhHHHHHHhcCcc----------------------cccccCCCCCeEEEEec
Q 004866 618 ---------ILPLIA-ADYEE-FGYPGDIDDFHAIRNYSPY----------------------DNIQKDVLYPAVLVTSS 664 (726)
Q Consensus 618 ---------~~~~~~-~~~~~-~g~~~~~~~~~~~~~~sp~----------------------~~i~~~~~~P~lli~g~ 664 (726)
..+... ..... ............+...+|. ..+.. ++.|+|++||.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~PvLii~G~ 260 (330)
T PLN02298 182 PQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKD-VSIPFIVLHGS 260 (330)
T ss_pred HHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhh-cCCCEEEEecC
Confidence 000000 00000 0000000000111111111 22333 78999999999
Q ss_pred CCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhh-HHHHHHHHHHHHHHhhc
Q 004866 665 FNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYL-QCKESALETAFLIKMME 725 (726)
Q Consensus 665 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~-~~~~~~~~~~fl~~~l~ 725 (726)
.|..||+.++.++++++...++ .+.+++++||.... ... .......+.+||.++++
T Consensus 261 ~D~ivp~~~~~~l~~~i~~~~~-----~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~ 319 (330)
T PLN02298 261 ADVVTDPDVSRALYEEAKSEDK-----TIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCT 319 (330)
T ss_pred CCCCCCHHHHHHHHHHhccCCc-----eEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998875432 23337899997542 222 22334567899998875
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-19 Score=181.24 Aligned_cols=246 Identities=18% Similarity=0.175 Sum_probs=157.9
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
....+..+.|.+.+|..|.++++.|++. +++.|+||.+||..+.. ..+ .....++.+||+|+.+|.||.|+....
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~--~~~~Pavv~~hGyg~~~--~~~-~~~~~~a~~G~~vl~~d~rGqg~~~~d 126 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA--KGKLPAVVQFHGYGGRS--GDP-FDLLPWAAAGYAVLAMDVRGQGGRSPD 126 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S--SSSEEEEEEE--TT--G--GGH-HHHHHHHHTT-EEEEE--TTTSSSS-B
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC--CCCcCEEEEecCCCCCC--CCc-ccccccccCCeEEEEecCCCCCCCCCC
Confidence 4678889999999999999999999853 47899999999754331 112 233568899999999999999954333
Q ss_pred cccc------ccccCCC----------CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 541 WHHD------GRRTKKL----------NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 541 ~~~~------~~~~~~~----------~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
.... +....+. ..+.|.+.++++|.+++.+|++||+++|.|.||.++++++.-. ++++++++.
T Consensus 127 ~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd-~rv~~~~~~ 205 (320)
T PF05448_consen 127 YRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALD-PRVKAAAAD 205 (320)
T ss_dssp -SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHS-ST-SEEEEE
T ss_pred ccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhC-ccccEEEec
Confidence 2211 1111111 2468999999999999999999999999999999999999975 468999999
Q ss_pred CCcc-ccccccc-CC-CCCCCh-hhhcccCCC--C-ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHH
Q 004866 605 VPFL-DATNTLL-YP-ILPLIA-ADYEEFGYP--G-DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKW 677 (726)
Q Consensus 605 ~p~~-d~~~~~~-~~-~~~~~~-~~~~~~g~~--~-~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~ 677 (726)
+|++ |....+. .. ..+... ..|..+.++ . .++.++.+.-++..+.++. ++.|+++-.|-.|+.|||......
T Consensus 206 vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~r-i~~pvl~~~gl~D~~cPP~t~fA~ 284 (320)
T PF05448_consen 206 VPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARR-IKCPVLFSVGLQDPVCPPSTQFAA 284 (320)
T ss_dssp SESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG---SEEEEEEETT-SSS-HHHHHHH
T ss_pred CCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHH-cCCCEEEEEecCCCCCCchhHHHH
Confidence 9965 4332211 11 122211 122222222 2 2345566666677776665 999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 678 VARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 678 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
+++|... +.+.+++..||.... .......+.||.+|
T Consensus 285 yN~i~~~------K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 285 YNAIPGP------KELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp HCC--SS------EEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred HhccCCC------eeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 9999754 244448999996432 12234567888875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-18 Score=172.28 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=152.8
Q ss_pred ceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEcc--CCCCCCC
Q 004866 463 YSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADV--RGGGGGG 538 (726)
Q Consensus 463 ~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~--RG~g~~g 538 (726)
.+.+.+.+.+. -|.++++.++.|++.. .++.|+|+++||..+......+....+.|++ .|++|++||. ||++..|
T Consensus 11 ~~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~ 89 (275)
T TIGR02821 11 GTQGFYRHKSETCGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAG 89 (275)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCC
Confidence 45555666654 5677889999998643 3468999999997654322222233445554 6999999997 7766433
Q ss_pred --Ccc--------ccccc-ccC--CCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 539 --KKW--------HHDGR-RTK--KLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 539 --~~~--------~~~~~-~~~--~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
..| +-... ..+ .......+...+..++++ --+|++|++|+|+||||++++.++.++|++|+++++.
T Consensus 90 ~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~ 169 (275)
T TIGR02821 90 EDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAF 169 (275)
T ss_pred CcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEE
Confidence 122 21100 001 111233344555555554 3378899999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCCChhhhc-ccCCCCChhHHHHHHhcCccccccc-CCCCCeEEEEecCCCCcCh-HHHHHHHHHH
Q 004866 605 VPFLDATNTLLYPILPLIAADYE-EFGYPGDIDDFHAIRNYSPYDNIQK-DVLYPAVLVTSSFNTRFGV-WEAAKWVARV 681 (726)
Q Consensus 605 ~p~~d~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~i~~-~~~~P~lli~g~~D~~V~~-~~~~~~~~~L 681 (726)
+|+++... .+....... .++.+.. .+..++|...+.. ....|+++++|+.|+.|+. .++.++.++|
T Consensus 170 ~~~~~~~~------~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l 238 (275)
T TIGR02821 170 APIVAPSR------CPWGQKAFSAYLGADEA-----AWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQAC 238 (275)
T ss_pred CCccCccc------CcchHHHHHHHhccccc-----chhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHH
Confidence 99987532 111111111 1233221 1234555544432 1345666668889999999 6899999999
Q ss_pred HhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 682 RESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 682 ~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
++++++ +.+ +++++|++.... ......+.|..+++
T Consensus 239 ~~~g~~-----v~~~~~~g~~H~f~~~~---~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 239 RAAGQA-----LTLRRQAGYDHSYYFIA---SFIADHLRHHAERL 275 (275)
T ss_pred HHcCCC-----eEEEEeCCCCccchhHH---HhHHHHHHHHHhhC
Confidence 999853 333 899999874422 23344567776553
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-18 Score=160.22 Aligned_cols=230 Identities=17% Similarity=0.174 Sum_probs=163.0
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
....++-.++|++.+|.+|.+|++.|+.. +++.|+||+.||=.+.. .+-.....|+..||+|+.+|.||.|++..
T Consensus 51 ~~~ve~ydvTf~g~~g~rI~gwlvlP~~~--~~~~P~vV~fhGY~g~~---g~~~~~l~wa~~Gyavf~MdvRGQg~~~~ 125 (321)
T COG3458 51 LPRVEVYDVTFTGYGGARIKGWLVLPRHE--KGKLPAVVQFHGYGGRG---GEWHDMLHWAVAGYAVFVMDVRGQGSSSQ 125 (321)
T ss_pred CCceEEEEEEEeccCCceEEEEEEeeccc--CCccceEEEEeeccCCC---CCccccccccccceeEEEEecccCCCccc
Confidence 34678889999999999999999999853 37899999999732221 13345567889999999999999997732
Q ss_pred ------------cccccccccC-----CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEE
Q 004866 540 ------------KWHHDGRRTK-----KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602 (726)
Q Consensus 540 ------------~~~~~~~~~~-----~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 602 (726)
.|+-.|..+. ....+.|...+++-+.+...+|++||++.|+|.||.++++++.- ..++++++
T Consensus 126 dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal-~~rik~~~ 204 (321)
T COG3458 126 DTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAAL-DPRIKAVV 204 (321)
T ss_pred cCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhc-Chhhhccc
Confidence 1111111111 13468999999999999999999999999999999999999986 56789999
Q ss_pred EeCCcccccccccCCCCCCChhhhcc------cCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHH
Q 004866 603 LEVPFLDATNTLLYPILPLIAADYEE------FGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 676 (726)
Q Consensus 603 ~~~p~~d~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~ 676 (726)
+.+|++.-...... + .+...|.| .-.|.+.+.++.+.-++-. |+..+++.|+|+..|-.|+.|||.-...
T Consensus 205 ~~~Pfl~df~r~i~--~-~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~-n~A~RiK~pvL~svgL~D~vcpPstqFA 280 (321)
T COG3458 205 ADYPFLSDFPRAIE--L-ATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIV-NLAARIKVPVLMSVGLMDPVCPPSTQFA 280 (321)
T ss_pred ccccccccchhhee--e-cccCcHHHHHHHHHhcCchHHHHHHHHhhhhhh-hHHHhhccceEEeecccCCCCCChhhHH
Confidence 99998753322111 1 11112222 1233333344444333333 4444599999999999999999999888
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCCCCCCCc
Q 004866 677 WVARVRESTIYDPKRPILLNLTTDIVEEN 705 (726)
Q Consensus 677 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 705 (726)
.+++|...+ .+.+|+.-+|....
T Consensus 281 ~yN~l~~~K------~i~iy~~~aHe~~p 303 (321)
T COG3458 281 AYNALTTSK------TIEIYPYFAHEGGP 303 (321)
T ss_pred HhhcccCCc------eEEEeeccccccCc
Confidence 898887643 45556666686543
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=157.09 Aligned_cols=211 Identities=16% Similarity=0.103 Sum_probs=152.8
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.-.||++||-.|.. ........+|.++||.|.+|++||||.....+...+..+| ++|+.++.++|.++++ +
T Consensus 15 ~~AVLllHGFTGt~--~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~ 85 (243)
T COG1647 15 NRAVLLLHGFTGTP--RDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---D 85 (243)
T ss_pred CEEEEEEeccCCCc--HHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---C
Confidence 36899999876644 4567788899999999999999999998888777666654 7899999999999998 6
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc-cCCCCCCChhhhcccCCCCChhHHHHHHhcC--cc---
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL-LYPILPLIAADYEEFGYPGDIDDFHAIRNYS--PY--- 647 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~s--p~--- 647 (726)
.|+|.|.||||.+++.++.++| .+++|..++.++..+.- ....+-.....+..+..+..+..-+.|+++. |.
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~~~~ 163 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTT 163 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchHHHH
Confidence 8999999999999999999988 56777666655543210 0000000011222333333222233444544 22
Q ss_pred -----------cccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHH
Q 004866 648 -----------DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALE 716 (726)
Q Consensus 648 -----------~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 716 (726)
.++.. |..|+++++|..|+.||.+.+..++..+..-.+ .+..+.+.||-.....++-...+.+
T Consensus 164 ~~~~~~i~~~~~~~~~-I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~K-----eL~~~e~SgHVIt~D~Erd~v~e~V 237 (243)
T COG1647 164 AQLKKLIKDARRSLDK-IYSPTLVVQGRQDEMVPAESANFIYDHVESDDK-----ELKWLEGSGHVITLDKERDQVEEDV 237 (243)
T ss_pred HHHHHHHHHHHhhhhh-cccchhheecccCCCCCHHHHHHHHHhccCCcc-----eeEEEccCCceeecchhHHHHHHHH
Confidence 34554 889999999999999999999999999887542 3333799999776656667777788
Q ss_pred HHHHH
Q 004866 717 TAFLI 721 (726)
Q Consensus 717 ~~fl~ 721 (726)
+.||.
T Consensus 238 ~~FL~ 242 (243)
T COG1647 238 ITFLE 242 (243)
T ss_pred HHHhh
Confidence 99986
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-17 Score=172.40 Aligned_cols=250 Identities=12% Similarity=0.048 Sum_probs=154.9
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
.+..+...+.+.||.+|.+..+.|++. .+.|+||++||..+.. ...|......|+++||.|+.+|+||+|.+....
T Consensus 58 ~~~~~~~~~~~~~g~~l~~~~~~p~~~---~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~ 133 (349)
T PLN02385 58 GIKTEESYEVNSRGVEIFSKSWLPENS---RPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGLH 133 (349)
T ss_pred CcceeeeeEEcCCCCEEEEEEEecCCC---CCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence 344555667778999999888887642 3468999999964432 223456678888899999999999999764210
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC----
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP---- 617 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~---- 617 (726)
+.........+|+.+.++++..+...+..++.++||||||.+++.++.++|++++++|+.+|+..........
T Consensus 134 ---~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~ 210 (349)
T PLN02385 134 ---GYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVL 210 (349)
T ss_pred ---CCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHH
Confidence 0000111224555555555544333445689999999999999999999999999999999875432100000
Q ss_pred --------CCCCC----hhhhcc--cCCC-----------------CChhHHHHHHhcCc-ccccccCCCCCeEEEEecC
Q 004866 618 --------ILPLI----AADYEE--FGYP-----------------GDIDDFHAIRNYSP-YDNIQKDVLYPAVLVTSSF 665 (726)
Q Consensus 618 --------~~~~~----~~~~~~--~g~~-----------------~~~~~~~~~~~~sp-~~~i~~~~~~P~lli~g~~ 665 (726)
..|.. ...... +..+ ......+.+..... ...+.+ ++.|+|+|+|+.
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~-i~~P~Lii~G~~ 289 (349)
T PLN02385 211 QILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEE-VSLPLLILHGEA 289 (349)
T ss_pred HHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhccc-CCCCEEEEEeCC
Confidence 00000 000000 0000 00001111111111 123344 789999999999
Q ss_pred CCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhh-HHHHHHHHHHHHHHhh
Q 004866 666 NTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYL-QCKESALETAFLIKMM 724 (726)
Q Consensus 666 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~-~~~~~~~~~~fl~~~l 724 (726)
|..||+..+.++++++...++ .+.+++++||.... ... .......+++||.+++
T Consensus 290 D~vv~~~~~~~l~~~~~~~~~-----~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 290 DKVTDPSVSKFLYEKASSSDK-----KLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCccChHHHHHHHHHcCCCCc-----eEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 999999999999988864331 23337999997542 222 3335567789999875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=173.38 Aligned_cols=278 Identities=12% Similarity=0.046 Sum_probs=187.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccC
Q 004866 20 EEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFT 99 (726)
Q Consensus 20 en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 99 (726)
|+.++++++... +.+++|.++|...+-+...+.|...+..++|.+..++.....+|......
T Consensus 118 ~~~~~~~~~~~~-~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------------- 179 (417)
T TIGR02800 118 LQLLGKQYTVTA-SQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDG----------------- 179 (417)
T ss_pred EEeeeeeEEcCH-HHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCC-----------------
Confidence 455666666554 66667777777666666677888888888888776544456666654321
Q ss_pred CCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCC
Q 004866 100 SGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDG 178 (726)
Q Consensus 100 ~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg 178 (726)
...+.|++.+. .+..++|||||++|||+....+ ..+|+++|+++|+...+.. ......+.|+|||
T Consensus 180 ---~~~~~l~~~~~---------~~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 180 ---ANPQTITRSRE---------PILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred ---CCCEEeecCCC---------ceecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 34566776541 2345679999999999875544 3679999999997665443 3345568999999
Q ss_pred CEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee
Q 004866 179 QALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW 258 (726)
Q Consensus 179 ~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 258 (726)
+.|+|+.... ...+||+++++++....+... . .....+.|+|||++|++.+.......||++|+.+ ++.+.+.
T Consensus 246 ~~l~~~~~~~--~~~~i~~~d~~~~~~~~l~~~-~--~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~ 318 (417)
T TIGR02800 246 SKLAVSLSKD--GNPDIYVMDLDGKQLTRLTNG-P--GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLT 318 (417)
T ss_pred CEEEEEECCC--CCccEEEEECCCCCEEECCCC-C--CCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEee
Confidence 9999985432 235899999988763333211 1 1123468999999999998877777999999987 4455565
Q ss_pred ccCC-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCC
Q 004866 259 ECEG-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGR 337 (726)
Q Consensus 259 ~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g 337 (726)
.... .....++++|+.+++.+...+ .++|+.++++ . . +..++.......-..+...++.|++....+|
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~------~~~i~~~d~~-~---~-~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGG------GFNIAVMDLD-G---G-GERVLTDTGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCC------ceEEEEEeCC-C---C-CeEEccCCCCCCCceECCCCCEEEEEEeCCC
Confidence 4332 234567889998888776432 4778999886 2 2 3334333222211246666788999998888
Q ss_pred eeEEEEEecC
Q 004866 338 TYRLCSVSLP 347 (726)
Q Consensus 338 ~~~l~~~~l~ 347 (726)
...+++++.+
T Consensus 388 ~~~l~~~~~~ 397 (417)
T TIGR02800 388 RGVLGLVSTD 397 (417)
T ss_pred cEEEEEEECC
Confidence 8888888764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=182.22 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=175.1
Q ss_pred CCCceEEEEEEEC-----CCCc--EEEEEEEEcCCCCCCCCccEEE----EEcCCCC-------CCC------C------
Q 004866 460 SEFYSCEQYDVPS-----HDGI--SVPLTIIYSPKYKKENQNPGLL----HGHGAYG-------ELL------D------ 509 (726)
Q Consensus 460 ~~~~~~~~~~~~s-----~dG~--~i~~~l~~p~~~~~~~~~P~vl----~~hGg~~-------~~~------~------ 509 (726)
......|.|++.+ .||+ .|.+.|+.|+....+-|.|+|+ |..|.-. ..+ .
T Consensus 165 ~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (767)
T PRK05371 165 TSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPPRAQF 244 (767)
T ss_pred cccceEEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCCcccc
Confidence 5667788999976 3675 6899999998765455889988 3344200 000 0
Q ss_pred ----------------cc-----chHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc-
Q 004866 510 ----------------KR-----WRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK- 567 (726)
Q Consensus 510 ----------------~~-----~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~- 567 (726)
.. -....++|+.+||+|++.|.||.++++..|.. .+..+.+|..++|+||..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl~~~~ 319 (767)
T PRK05371 245 TPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWLNGRA 319 (767)
T ss_pred ccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHHhhCC
Confidence 00 11345889999999999999999988766543 2356889999999999853
Q ss_pred -CCCC------------CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCC---CC-----hh--
Q 004866 568 -EIVK------------EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP---LI-----AA-- 624 (726)
Q Consensus 568 -~~~d------------~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~---~~-----~~-- 624 (726)
+++| .+|||++|.||||+++.++|+..|+.++|+|+.+++.++...+...... .. ..
T Consensus 320 ~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l 399 (767)
T PRK05371 320 TAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVL 399 (767)
T ss_pred ccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhH
Confidence 2223 4899999999999999999998889999999999998876533221110 00 00
Q ss_pred ---hhcc---cCC----CC----------------ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHH
Q 004866 625 ---DYEE---FGY----PG----------------DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWV 678 (726)
Q Consensus 625 ---~~~~---~g~----~~----------------~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~ 678 (726)
.+.. .|. +. ....-+.+.+.+++.++.+ ++.|+|++||-.|.+|++.++.+++
T Consensus 400 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~k-IkvPvLlIhGw~D~~V~~~~s~~ly 478 (767)
T PRK05371 400 AELTYSRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADK-IKASVLVVHGLNDWNVKPKQVYQWW 478 (767)
T ss_pred HHHhhhcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhC-CCCCEEEEeeCCCCCCChHHHHHHH
Confidence 0000 000 00 0001123455677777776 9999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 679 ARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 679 ~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
++|++++++ ..++ ...++|+........+....+.+||.++|.
T Consensus 479 ~aL~~~g~p---kkL~-l~~g~H~~~~~~~~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 479 DALPENGVP---KKLF-LHQGGHVYPNNWQSIDFRDTMNAWFTHKLL 521 (767)
T ss_pred HHHHhcCCC---eEEE-EeCCCccCCCchhHHHHHHHHHHHHHhccc
Confidence 999998754 2233 346689654433444555667899998873
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=157.13 Aligned_cols=215 Identities=17% Similarity=0.203 Sum_probs=160.4
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccc----
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH---- 542 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~---- 542 (726)
.+.+++.| .++++++.+|++. ++.|+||.+|+-+|. .+......+.|+++||+|++||+-+..+......
T Consensus 4 ~v~~~~~~-~~~~~~~a~P~~~---~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~ 77 (236)
T COG0412 4 DVTIPAPD-GELPAYLARPAGA---GGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPA 77 (236)
T ss_pred ceEeeCCC-ceEeEEEecCCcC---CCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHH
Confidence 46688877 7899999999863 334999999998884 3566778899999999999999865332222111
Q ss_pred --ccc--cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCC
Q 004866 543 --HDG--RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPI 618 (726)
Q Consensus 543 --~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~ 618 (726)
..+ ..........|+.++++||.+++.++++||+++|.|+||.+++.++.+.| .++|+++..|..-..
T Consensus 78 ~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~------- 149 (236)
T COG0412 78 ELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD------- 149 (236)
T ss_pred HHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC-------
Confidence 111 00111457899999999999999899999999999999999999999766 789999877632110
Q ss_pred CCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcC
Q 004866 619 LPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLT 698 (726)
Q Consensus 619 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 698 (726)
.+. ... +++.|+|++.++.|..+|.....++.+++.++++. ..+.+|++
T Consensus 150 ------------~~~---------------~~~-~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~---~~~~~y~g 198 (236)
T COG0412 150 ------------DTA---------------DAP-KIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVK---VDLEIYPG 198 (236)
T ss_pred ------------ccc---------------ccc-cccCcEEEEecccCCCCChhHHHHHHHHHHhcCCC---eeEEEeCC
Confidence 000 022 37889999999999999999999999999998643 23344888
Q ss_pred CCCCCCc----------hhhHHHHHHHHHHHHHHhhcC
Q 004866 699 TDIVEEN----------RYLQCKESALETAFLIKMMES 726 (726)
Q Consensus 699 ~gH~~~~----------~~~~~~~~~~~~~fl~~~l~~ 726 (726)
+.|++.. .......+.++++||.++|+.
T Consensus 199 a~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~~ 236 (236)
T COG0412 199 AGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLGA 236 (236)
T ss_pred CccccccCCCcccccCCHHHHHHHHHHHHHHHHHhccC
Confidence 9998763 122344577889999998864
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=163.75 Aligned_cols=231 Identities=14% Similarity=0.099 Sum_probs=154.7
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchHHHHHHHH-CCcEEEEEccCCCCCCCCc
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~ 540 (726)
...+.+.+++.+| .|++.+++|.. .+.|+||++|||.... ....+......|+. .|+.|+.+|||...+.
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~--- 126 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA--- 126 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC---
Confidence 4578888998888 59999998853 2359999999975432 22345666777887 5999999999987652
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHcC------CCceeEEEEeCCccccc
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~ 611 (726)
..+..++|+.++++|+.++ -.+|++||+|+|+|+||.+++.++.+. +.+++++|+.+|++|+.
T Consensus 127 --------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 127 --------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred --------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 2335789999999999864 236899999999999999999888642 35789999999998853
Q ss_pred ccccCCCCCCChhhhcccCCC---CChhHHHHHH---------hcCccc-----ccccCCCCCeEEEEecCCCCcChHHH
Q 004866 612 NTLLYPILPLIAADYEEFGYP---GDIDDFHAIR---------NYSPYD-----NIQKDVLYPAVLVTSSFNTRFGVWEA 674 (726)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~---------~~sp~~-----~i~~~~~~P~lli~g~~D~~V~~~~~ 674 (726)
.. .. ...++.. ...+..+.+. ..+|+. ++.. .-.|+++++|+.|..+ .++
T Consensus 199 ~~---~s-------~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~-~lPp~~i~~g~~D~L~--de~ 265 (318)
T PRK10162 199 DS---VS-------RRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTR-DVPPCFIAGAEFDPLL--DDS 265 (318)
T ss_pred CC---hh-------HHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhc-CCCCeEEEecCCCcCc--ChH
Confidence 21 00 0001100 0001111110 123331 1211 2357788888899765 489
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 675 AKWVARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 675 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
..|+++|+++|++ ..+..+++..|++.. -....+....+.+||.++|.
T Consensus 266 ~~~~~~L~~aGv~---v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 266 RLLYQTLAAHQQP---CEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHcCCC---EEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999964 122228999998643 12233445566789988874
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=163.24 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=151.0
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+.+.||.+|++.++.|.+ .+.|+|+++||.... ...|...+..|+++||.|+++|+||+|.+.... .....
T Consensus 5 ~~~~~g~~l~~~~~~~~~----~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~---~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT----YPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGHGRSNGEK---MMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCCC----CCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCCCCCCCcc---CCcCC
Confidence 446699999998887742 345889999996543 346778889999999999999999999763211 00111
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc------------ccCC
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT------------LLYP 617 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~------------~~~~ 617 (726)
....++|+...++++.+. ....+++++|+|+||.+++.++.++|++++++|+.+|..+.... +...
T Consensus 76 ~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 112356666777666543 22368999999999999999999999999999999997653210 0000
Q ss_pred C-CC--CChhh--------hcccCCCC------ChhHHHHHHhcC-c-ccccccCCCCCeEEEEecCCCCcChHHHHHHH
Q 004866 618 I-LP--LIAAD--------YEEFGYPG------DIDDFHAIRNYS-P-YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWV 678 (726)
Q Consensus 618 ~-~~--~~~~~--------~~~~g~~~------~~~~~~~~~~~s-p-~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~ 678 (726)
. .. +.... .....+|. .......+...+ . ...+.+ ++.|+|+++|+.|..||+..+.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPK-IKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhccc-CCCCEEEEecCCCCcCChHHHHHHH
Confidence 0 00 00000 00001110 000000011110 1 123444 7899999999999999999999998
Q ss_pred HHHHhcCCCCCCCcEEEEcCCCCCCCc-h-hhHHHHHHHHHHHHHHh
Q 004866 679 ARVRESTIYDPKRPILLNLTTDIVEEN-R-YLQCKESALETAFLIKM 723 (726)
Q Consensus 679 ~~L~~~~~~~~~~~~~~~~~~gH~~~~-~-~~~~~~~~~~~~fl~~~ 723 (726)
+.+.. ++ .+.+++++||.... . ..+.+..++.++||.++
T Consensus 233 ~~~~~-~~-----~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 233 QHANC-NR-----EIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHccC-Cc-----eEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 88754 21 22237999997654 2 33566777889999876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-15 Score=165.05 Aligned_cols=210 Identities=7% Similarity=-0.051 Sum_probs=140.1
Q ss_pred eceeeCCCCCE--EEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEE--E
Q 004866 125 ELSEVSPDHKF--LAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS--I 199 (726)
Q Consensus 125 ~~~~~SPDG~~--la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~--~ 199 (726)
..++|||||+. ++|++.+.| ..+||++++++|+..+++. .+....+.|||||+.|+|+..... ..++|.+ +
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~ 263 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLG--VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFS 263 (428)
T ss_pred ccceEccCCCceEEEEEEccCC--CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCC--CcceeEEEee
Confidence 46899999998 556777665 4689999999998877765 445567999999999999864322 2356665 4
Q ss_pred cCCC--CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEE
Q 004866 200 IGST--DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLY 276 (726)
Q Consensus 200 l~t~--~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~ 276 (726)
+.++ ...+.+.... ......+.|||||++|++.+...+..+||++++....+..+.++.... .....++|||+.|+
T Consensus 264 ~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 264 LETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred cccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 4432 1222232221 111235789999999999987776788999998643344556654432 23567899999999
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
|.+...+ ..+|+.++++ . ++.+.+........-..++..++.|++....+|...|++++++++
T Consensus 343 f~~~~~g------~~~I~v~dl~-~---g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 343 FCSVIKG------VRQICVYDLA-T---GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEcCCC------CcEEEEEECC-C---CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9887543 3568888876 2 334444322111112234455678888887778889999998754
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=164.34 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=135.1
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCC-CCCcccccccc--c----CC
Q 004866 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGG-GGKKWHHDGRR--T----KK 550 (726)
Q Consensus 478 i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~-~g~~~~~~~~~--~----~~ 550 (726)
|.+++..|++. ++.|.||.+|+.+|.. +........|+++||.|++||+-++.. ......+.... . ..
T Consensus 1 ~~ay~~~P~~~---~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEGG---GPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETTS---SSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCCC---CCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 56889999863 6789999999988854 445566789999999999999865554 11111110000 0 01
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccC
Q 004866 551 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 630 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g 630 (726)
.....|+.+++++|.+++.++.+||+++|.|+||.+++.++.+. +.++|+|+..|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 23467888999999999888999999999999999999988875 67899998887000
Q ss_pred CCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc-h-h-
Q 004866 631 YPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-R-Y- 707 (726)
Q Consensus 631 ~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~-~- 707 (726)
+. .+.....+ ++.|+++++|+.|+.++.++..++.++|++++++ ..+.+|++++|++.. . .
T Consensus 134 -~~-----------~~~~~~~~-~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~---~~~~~y~ga~HgF~~~~~~~ 197 (218)
T PF01738_consen 134 -PP-----------PPLEDAPK-IKAPVLILFGENDPFFPPEEVEALEEALKAAGVD---VEVHVYPGAGHGFANPSRPP 197 (218)
T ss_dssp -GG-----------GHHHHGGG---S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTT---EEEEEETT--TTTTSTTSTT
T ss_pred -CC-----------cchhhhcc-cCCCEeecCccCCCCCChHHHHHHHHHHHhcCCc---EEEEECCCCcccccCCCCcc
Confidence 00 00111233 6789999999999999999999999999998853 122229999999865 1 1
Q ss_pred ----hHHHHHHHHHHHHHHhh
Q 004866 708 ----LQCKESALETAFLIKMM 724 (726)
Q Consensus 708 ----~~~~~~~~~~~fl~~~l 724 (726)
...+.+.+.++||.++|
T Consensus 198 ~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 198 YDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp --HHHHHHHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHHHHHHhcC
Confidence 22344667789998886
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-16 Score=162.45 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=151.2
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
+..++...||.++.+....|. .+.|+||++||..+.. ..|...+..|+++||.|+++|+||+|.++.......
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~~--~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~ 103 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIESY--VKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPH 103 (330)
T ss_pred cceEEEcCCCCEEEEEEccCC-----CCCcEEEEECCccchH--HHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCC
Confidence 445677789999887665443 2346899999964422 346667778899999999999999998754321111
Q ss_pred cccCCCCcHHHHHHHHHHHHHc--CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc---------
Q 004866 546 RRTKKLNSIKDFISCARFLIEK--EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--------- 614 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~--------- 614 (726)
.+ ....++++.+.+..+++. ...+..++.++||||||.+++.++.++|++++++|+.+|........
T Consensus 104 ~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~ 181 (330)
T PRK10749 104 RG--HVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRIL 181 (330)
T ss_pred cC--ccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHH
Confidence 11 113455555555444432 11245789999999999999999999999999999999875421000
Q ss_pred --c--CCCCCCC-hhhhccc-CCC-------CChhH----HHHHHhcCc----------------------ccccccCCC
Q 004866 615 --L--YPILPLI-AADYEEF-GYP-------GDIDD----FHAIRNYSP----------------------YDNIQKDVL 655 (726)
Q Consensus 615 --~--~~~~~~~-~~~~~~~-g~~-------~~~~~----~~~~~~~sp----------------------~~~i~~~~~ 655 (726)
. ....... ......+ ..+ ..++. .+.+. .+| ...+.+ ++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~ 259 (330)
T PRK10749 182 NWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYA-DDPELRVGGPTYHWVRESILAGEQVLAGAGD-IT 259 (330)
T ss_pred HHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH-hCCCcccCCCcHHHHHHHHHHHHHHHhhccC-CC
Confidence 0 0000000 0000000 000 00111 01111 111 123344 78
Q ss_pred CCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHHh
Q 004866 656 YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKM 723 (726)
Q Consensus 656 ~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~ 723 (726)
.|+|+|+|+.|..|++..+.+++++++.++.......+.+++++||.... ...+......+.+||.++
T Consensus 260 ~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 260 TPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred CCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999876532111223338999997443 223555566778999765
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=157.07 Aligned_cols=192 Identities=11% Similarity=0.064 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHH-HCCcEEEEEccCCCCCCCCc--ccccccccCCCCcHHH
Q 004866 480 LTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLL-DRGWVVAFADVRGGGGGGKK--WHHDGRRTKKLNSIKD 556 (726)
Q Consensus 480 ~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~--~~~~~~~~~~~~~~~D 556 (726)
++++.|++. +++.|+||++||+.+.............++ +.||+|+.||+||++..+.. |........+.....|
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 367788764 367899999999766432111111133344 47999999999998755443 3433222233457888
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChh
Q 004866 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDID 636 (726)
Q Consensus 557 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 636 (726)
+...++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.++..-.... .... .......+....
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~~~~---~~~~~~~~~~~~ 151 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----SSIS---ATPQMCTAATAA 151 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----cchh---hHhhcCCCCCHH
Confidence 999999999887789999999999999999999999999999999888775421110 0000 011111112111
Q ss_pred H-HHHHHhcCcccccccCCCCCe-EEEEecCCCCcChHHHHHHHHHHHhc
Q 004866 637 D-FHAIRNYSPYDNIQKDVLYPA-VLVTSSFNTRFGVWEAAKWVARVRES 684 (726)
Q Consensus 637 ~-~~~~~~~sp~~~i~~~~~~P~-lli~g~~D~~V~~~~~~~~~~~L~~~ 684 (726)
. .+.+.... .... ...|+ +++||..|..||+..+.+++++|++.
T Consensus 152 ~~~~~~~~~~--~~~~--~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 152 SVCRLVRGMQ--SEYN--GPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHhccC--Cccc--CCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 1 12222211 1111 23454 58899999999999999999999987
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-15 Score=162.90 Aligned_cols=204 Identities=12% Similarity=0.069 Sum_probs=145.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||+....| ..+||++|+.+|+...++. ......+.|||||+.|+|+.... ...+||++++.+
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~--g~~~Iy~~dl~t 295 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD--GQPEIYVVDIAT 295 (448)
T ss_pred ccCceECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC--CCeEEEEEECCC
Confidence 456789999999999987554 4689999999998766654 33446789999999999985432 345899999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~g~~l~~~t~~ 281 (726)
++...+... ......+.|||||++|++.+......+||++|+++ ++.+.++.. .......+++||+.+++.+..
T Consensus 296 g~~~~lt~~---~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 296 KALTRITRH---RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--GKVSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CCeEECccC---CCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 763333221 11224578999999999998877778999999987 445555422 222335678999999997764
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
.+ .+.|+.++++ + +..+.+.....+.. ..+++.++.|++....+|...|++++++
T Consensus 371 ~g------~~~I~~~dl~-~---g~~~~lt~~~~d~~-ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 371 NG------KFNIARQDLE-T---GAMQVLTSTRLDES-PSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CC------ceEEEEEECC-C---CCeEEccCCCCCCC-ceECCCCCEEEEEEecCCceEEEEEECC
Confidence 32 3778888886 2 33343332211111 2566777889998888888899999875
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-15 Score=162.10 Aligned_cols=205 Identities=11% Similarity=0.068 Sum_probs=143.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||+....|. .+|+++|+++|+...++. .+....+.|||||+.|+|+.... ...+||++++.+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~--~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~ 279 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGR--PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG--GNTDIYTMDLRS 279 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCC--CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC--CCceEEEEECCC
Confidence 5678999999999999876553 689999999998776654 44556899999999999986432 345899999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~ 281 (726)
+....+... . .....+.|||||++|++.+.+....+||++|+++ +..+.++.... .....++|+|+.+++.+..
T Consensus 280 ~~~~~Lt~~-~--~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 280 GTTTRLTDS-P--AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred CceEEccCC-C--CccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 754333321 1 1223578999999999998877778999999987 45666664332 2235688999999998754
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCe---eEEEEEecCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRT---YRLCSVSLPL 348 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~---~~l~~~~l~~ 348 (726)
.+ .++|+.++++ . +..+ ++.......-..+++.++.|++.....+. ..|++++++.
T Consensus 355 ~~------~~~i~~~d~~-~---~~~~-~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 355 GG------QFSIGVMKPD-G---SGER-ILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CC------ceEEEEEECC-C---CceE-eccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 32 3678888875 2 2223 33332221122355556788877766665 6899999864
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-15 Score=157.79 Aligned_cols=209 Identities=12% Similarity=0.058 Sum_probs=147.1
Q ss_pred eceeeCCCCCE-EEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKF-LAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~-la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
..++|||||++ ++|++..++ ..+||++|+++|+..+++. .+....+.|||||+.|+|+.... ...+||++++.+
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~--~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~dl~~ 266 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGER--KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK--GQPDIYLYDTNT 266 (419)
T ss_pred EeEEECCCCCcEEEEEEccCC--CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC--CCcEEEEEECCC
Confidence 35789999997 666654433 3589999999999888765 34456789999999999986542 346899999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCc
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~ 282 (726)
+....+... .. ....+.|||||+.|+|.+++....+||++|+++ ++.+.++.... ....++|||+.+++.+...
T Consensus 267 g~~~~LT~~-~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~--g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTLTQITNY-PG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS--GSVEQVVFHGK-NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcEEEcccC-CC--ccCccEECCCCCEEEEEECCCCCceEEEEECCC--CCeEeCccCCC-cCceECCCCCEEEEEEcCC
Confidence 754343322 11 223578999999999999988788999999987 45555553221 2347899999999988754
Q ss_pred ccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 283 KEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
........+.|+.++++ . +.++.|.... ......+++.++.|++....++...|+.++++.
T Consensus 341 ~~~~~~~~~~I~v~d~~-~---g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTN-S---DYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECC-C---CCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 21100113688999886 2 4456554332 222345677788899988888888999999864
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=147.20 Aligned_cols=248 Identities=14% Similarity=0.059 Sum_probs=163.0
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
.......+.+.+|..+-.-...|.... .+.-+|+++||..+ .....|...+..|+..||.|+..|++|+|.+...
T Consensus 25 ~~~~~~~~~n~rG~~lft~~W~p~~~~--~pr~lv~~~HG~g~-~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl-- 99 (313)
T KOG1455|consen 25 VTYSESFFTNPRGAKLFTQSWLPLSGT--EPRGLVFLCHGYGE-HSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGL-- 99 (313)
T ss_pred cceeeeeEEcCCCCEeEEEecccCCCC--CCceEEEEEcCCcc-cchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCC--
Confidence 334455678899999887777775422 44567888897533 3335677788999999999999999999976311
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC-----
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP----- 617 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~----- 617 (726)
.+.-.....-++|+..-++....+.---....+++|+||||.+++.++.++|+.+.++|+.+|++-+...+..+
T Consensus 100 -~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~ 178 (313)
T KOG1455|consen 100 -HAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVIS 178 (313)
T ss_pred -cccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHH
Confidence 01111112234555555555444443344678999999999999999999999999999999987654322110
Q ss_pred -------CCCCCh-hhhcccCCC--CChhHHHHHHhcCcc----------------------cccccCCCCCeEEEEecC
Q 004866 618 -------ILPLIA-ADYEEFGYP--GDIDDFHAIRNYSPY----------------------DNIQKDVLYPAVLVTSSF 665 (726)
Q Consensus 618 -------~~~~~~-~~~~~~g~~--~~~~~~~~~~~~sp~----------------------~~i~~~~~~P~lli~g~~ 665 (726)
-+|... ........+ .+++. ......+|+ .++.+ +..|.|++||+.
T Consensus 179 ~l~~l~~liP~wk~vp~~d~~~~~~kdp~~-r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~-vtvPflilHG~d 256 (313)
T KOG1455|consen 179 ILTLLSKLIPTWKIVPTKDIIDVAFKDPEK-RKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNE-VTVPFLILHGTD 256 (313)
T ss_pred HHHHHHHhCCceeecCCccccccccCCHHH-HHHhhcCCceecCCccHHHHHHHHHHHHHHHHhccc-ccccEEEEecCC
Confidence 000000 000000000 12222 122223333 34444 889999999999
Q ss_pred CCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC---chhhHHHHHHHHHHHHHHh
Q 004866 666 NTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE---NRYLQCKESALETAFLIKM 723 (726)
Q Consensus 666 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~fl~~~ 723 (726)
|..+.+.-+.++++....+. +.+-+||+.=|... ..++......++.+||.++
T Consensus 257 D~VTDp~~Sk~Lye~A~S~D-----KTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 257 DKVTDPKVSKELYEKASSSD-----KTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred CcccCcHHHHHHHHhccCCC-----CceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999999999999988765 34445899999743 3567777788999999875
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-15 Score=158.27 Aligned_cols=245 Identities=14% Similarity=0.035 Sum_probs=153.5
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 543 (726)
......+...+|..+.+.++.|.. ..+.|+||++||..+.. ..|...+..|+++||.|+.+|+||+|.+...+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~--~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~- 182 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAA---GEMRGILIIIHGLNEHS--GRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHG- 182 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCC---CCCceEEEEECCchHHH--HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCC-
Confidence 345566788899999988888753 23457999999975532 346677888999999999999999997643311
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEeCCcccccccc------
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLDATNTL------ 614 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~~d~~~~~------ 614 (726)
.........+|+.++++++..+ .+..++.|+||||||.+++.++. +|+ +++++|+.+|..++....
T Consensus 183 --~~~~~~~~~~Dl~~~l~~l~~~--~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~ 257 (395)
T PLN02652 183 --YVPSLDYVVEDTEAFLEKIRSE--NPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAV 257 (395)
T ss_pred --CCcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHH
Confidence 0001112346777777777643 12347999999999999987765 564 789999999986543210
Q ss_pred ------cCCCCCC----------Ch--hh-hcccCCCCC-------hhHHHHHHhcC-cccccccCCCCCeEEEEecCCC
Q 004866 615 ------LYPILPL----------IA--AD-YEEFGYPGD-------IDDFHAIRNYS-PYDNIQKDVLYPAVLVTSSFNT 667 (726)
Q Consensus 615 ------~~~~~~~----------~~--~~-~~~~g~~~~-------~~~~~~~~~~s-p~~~i~~~~~~P~lli~g~~D~ 667 (726)
..+.... .. .. ...+.+|.. ....+.+.... ...++.+ ++.|+|++||..|.
T Consensus 258 ~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~-I~vPvLIi~G~~D~ 336 (395)
T PLN02652 258 APIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKS-VTVPFMVLHGTADR 336 (395)
T ss_pred HHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhccc-CCCCEEEEEeCCCC
Confidence 0000000 00 00 000001100 00000000000 0123344 78999999999999
Q ss_pred CcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 668 RFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 668 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.||+.++.++++++....+ .+.++++++|.........+..+.+.+||..+++
T Consensus 337 vvp~~~a~~l~~~~~~~~k-----~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 337 VTDPLASQDLYNEAASRHK-----DIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCHHHHHHHHHhcCCCCc-----eEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999998765432 2333799999743323345556677899998763
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-14 Score=157.06 Aligned_cols=205 Identities=15% Similarity=0.089 Sum_probs=145.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||+....+ ..+|+++|+++|+...++. .+....+.|||||+.|+|+.... ...+||++++.+
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~--g~~~Iy~~d~~~ 276 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD--GNPEIYVMDLAS 276 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCC--CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 456789999999999876544 4679999999998776654 33455799999999999986432 236899999988
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~ 281 (726)
+....+. .. ......+.|||||+.|++.+.+....+||++|+.+ ++.+.++... ......++++|+.+++.+..
T Consensus 277 ~~~~~lt-~~--~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 277 RQLSRVT-NH--PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRAERVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred CCeEEcc-cC--CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeecCCCCccceEECCCCCEEEEEEcc
Confidence 7533332 21 11223578999999999998877778999999987 4455554322 12234678999999998765
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
.+ .+.|+.+++. . +..+.+.....+. -..+++.++.+++....+|...|+.++++.
T Consensus 352 ~~------~~~l~~~dl~-t---g~~~~lt~~~~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 352 DG------NFHVAAQDLQ-R---GSVRILTDTSLDE-SPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CC------ceEEEEEECC-C---CCEEEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 43 3679999886 2 3344443221222 225666778888888888889999998753
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-14 Score=154.05 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=143.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||++...| ..+|+++|+.+|+...++. ......+.|||||+.|+|+.... ...+||++++.+
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~--g~~~I~~~d~~t 276 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--GSLNLYVMDLAS 276 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC--CCcEEEEEECCC
Confidence 567899999999999876544 3679999999998776654 34456799999999999985432 234799999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~ 281 (726)
+....+... . .....+.|||||++|++.+.+....+||.+|+++ +..+.++.... .....+++||+.+++.+..
T Consensus 277 g~~~~lt~~-~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 277 GQIRQVTDG-R--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CCEEEccCC-C--CCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 754333321 1 1234689999999999999877678999999987 34555543322 2235678999999988765
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
.+ ...|+.++++ . +.++.+... ....-..+++.++.|++...+++...|++++++.
T Consensus 352 ~g------~~~I~~~dl~-~---g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 352 GG------QQHIAKQDLA-T---GGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CC------CceEEEEECC-C---CCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 43 2568888876 2 344544322 1111234566677888888777777889888753
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-15 Score=142.55 Aligned_cols=211 Identities=18% Similarity=0.194 Sum_probs=152.7
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~ 542 (726)
..+.+..+++.|..+-+..+.|+. ...++++|.||--. ..+ .-......|.. -++.|+..||+|.|.++..-.
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~-Dlg-q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ps 107 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPE----AAHPTLLYSHGNAA-DLG-QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPS 107 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCcc----ccceEEEEcCCccc-chH-HHHHHHHHHhhcccceEEEEecccccccCCCcc
Confidence 455666777888787776666653 24689999998621 111 11122233333 489999999999997654432
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCC
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 622 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 622 (726)
+ .+..+|+.++.+||.+..- .+++|+++|+|+|...+..+|.+.| .+|+|+.+|+.+....+... . ..
T Consensus 108 E-------~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~-~-~~ 175 (258)
T KOG1552|consen 108 E-------RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPD-T-KT 175 (258)
T ss_pred c-------ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccC-c-ce
Confidence 2 2789999999999998755 7899999999999999999999988 79999999999877654321 1 11
Q ss_pred hhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q 004866 623 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 702 (726)
Q Consensus 623 ~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 702 (726)
..+.+.| +-+..++. +++|+|++||..|++|+..++.+++++.++.- .|++ ..++||.
T Consensus 176 ~~~~d~f---------------~~i~kI~~-i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~-----epl~-v~g~gH~ 233 (258)
T KOG1552|consen 176 TYCFDAF---------------PNIEKISK-ITCPVLIIHGTDDEVVDFSHGKALYERCKEKV-----EPLW-VKGAGHN 233 (258)
T ss_pred EEeeccc---------------cccCccee-ccCCEEEEecccCceecccccHHHHHhccccC-----CCcE-EecCCCc
Confidence 1122222 22556775 89999999999999999999999999999863 4666 4899997
Q ss_pred CCc-hhhHHHHHH
Q 004866 703 EEN-RYLQCKESA 714 (726)
Q Consensus 703 ~~~-~~~~~~~~~ 714 (726)
... ....++...
T Consensus 234 ~~~~~~~yi~~l~ 246 (258)
T KOG1552|consen 234 DIELYPEYIEHLR 246 (258)
T ss_pred ccccCHHHHHHHH
Confidence 655 445555544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=153.62 Aligned_cols=259 Identities=9% Similarity=0.044 Sum_probs=169.4
Q ss_pred eeeCCCCCEEEEEEeCCCCc----EEEEEEEECCCCceecccc-ccccceeEEecCCCE--EEEEEecCCCCCceEEEEE
Q 004866 127 SEVSPDHKFLAYTMYDKDND----YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQA--LIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e----~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~--l~y~~~~~~~~~~~l~~~~ 199 (726)
..++ +++|||+....+.+ .+.||++|.++++..+++. ......+.|||||+. |+|++... ...+||+++
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~--g~~~I~~~~ 217 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL--GVPKIFLGS 217 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC--CCceEEEEE
Confidence 3455 99999998654422 4689999999998888776 345578999999987 55675533 245899999
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEE--eCCCC-CCCeEEeeccCC--ceEEeeeecCCE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI--NAADP-FSGLTLIWECEG--LAHCIVEHHEGF 274 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~--d~~~~-~~~~~~l~~~~~--~~~~~~~~~g~~ 274 (726)
+.+++...+.. .+... ..+.|||||++|++.+...+..++|+. ++.++ .+.++.++.... ...+.++|||+.
T Consensus 218 l~~g~~~~lt~-~~g~~--~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~ 294 (428)
T PRK01029 218 LENPAGKKILA-LQGNQ--LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR 294 (428)
T ss_pred CCCCCceEeec-CCCCc--cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE
Confidence 98876444432 22222 247899999999999876666678875 55442 134556664332 235678999999
Q ss_pred EEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcc
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGV 354 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~ 354 (726)
|+|.++.++ ..+|+.++++ ..+ ...+.+........-..+++.++.|++....+|..+|+++|+.+++ .
T Consensus 295 Laf~s~~~g------~~~ly~~~~~-~~g-~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~ 363 (428)
T PRK01029 295 LVFVSNKDG------RPRIYIMQID-PEG-QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---D 363 (428)
T ss_pred EEEEECCCC------CceEEEEECc-ccc-cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---e
Confidence 999987653 2467777764 211 1123232222222233566778899998888888899999987643 1
Q ss_pred eeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEe
Q 004866 355 VHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQ 415 (726)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~ 415 (726)
..+. ..+.... ...+++|+..++|+... .....+|.+|+.+++.+.+..
T Consensus 364 ~~Lt-------~~~~~~~----~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 364 YQLT-------TSPENKE----SPSWAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVI 412 (428)
T ss_pred EEcc-------CCCCCcc----ceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeec
Confidence 1111 0111111 23356788888776554 345789999999988877764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-14 Score=154.57 Aligned_cols=204 Identities=14% Similarity=0.084 Sum_probs=143.6
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||+....+ ..+|+++|+.+|+...++. .+....+.|||||+.|+|+.... ...+||.+++.+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~ 273 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRD--GNSQIYTVNADG 273 (427)
T ss_pred cccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 456789999999999876544 4679999999998776653 44556799999999999975432 346899999876
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~ 281 (726)
+....+.. .. .....+.|||||++|++.+++....+||.+++.+ +..+.++... ......+++||+.+++.++.
T Consensus 274 ~~~~~lt~--~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 274 SGLRRLTQ--SS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CCcEECCC--CC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 65333321 11 1223578999999999988777778999999877 3455554322 12345688999999988875
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
++ .+.|+.+++. . +..+.+.....+ .-..++..++.|++....+|...|+.++++
T Consensus 349 ~g------~~~I~v~d~~-~---g~~~~lt~~~~~-~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 349 GG------AFKLYVQDLA-T---GQVTALTDTTRD-ESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CC------cEEEEEEECC-C---CCeEEccCCCCc-cCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 43 3678888876 2 333444322211 122456667889998888898899999875
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=151.62 Aligned_cols=243 Identities=17% Similarity=0.155 Sum_probs=160.1
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
..+..+.+.||..+.+..+.+... +..+||.+||..... ..|...+..|..+||.|+..|.||+|.+.+
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~----~~g~Vvl~HG~~Eh~--~ry~~la~~l~~~G~~V~~~D~RGhG~S~r----- 77 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP----PKGVVVLVHGLGEHS--GRYEELADDLAARGFDVYALDLRGHGRSPR----- 77 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC----CCcEEEEecCchHHH--HHHHHHHHHHHhCCCEEEEecCCCCCCCCC-----
Confidence 344567889999998877765532 226899999975533 446677899999999999999999998754
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCC--CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc---cc-----
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEI--VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN---TL----- 614 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~---~~----- 614 (726)
........|+|+++.++.+++.-. .-..+++++||||||.+++..+.+++..+.++|+.+|++.+.. ..
T Consensus 78 -~~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~ 156 (298)
T COG2267 78 -GQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARL 156 (298)
T ss_pred -CCcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHH
Confidence 111223457777777777766432 1347999999999999999999999999999999999998772 00
Q ss_pred -------cCCCCCCChh--hhcccCC-CCChhHHHHHHhcCcc----------------------cccccCCCCCeEEEE
Q 004866 615 -------LYPILPLIAA--DYEEFGY-PGDIDDFHAIRNYSPY----------------------DNIQKDVLYPAVLVT 662 (726)
Q Consensus 615 -------~~~~~~~~~~--~~~~~g~-~~~~~~~~~~~~~sp~----------------------~~i~~~~~~P~lli~ 662 (726)
..+.++.... +...... ..+++..+.+.+ +|+ ..-...++.|+||++
T Consensus 157 ~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~-dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~ 235 (298)
T COG2267 157 ALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEA-DPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQ 235 (298)
T ss_pred hcccccccccccccCcccccCcCcchhhcCHHHHHHHhc-CCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEe
Confidence 0011111110 0000000 012222222222 221 111123789999999
Q ss_pred ecCCCCcC-hHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhH--HHHHHHHHHHHHHhhc
Q 004866 663 SSFNTRFG-VWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQ--CKESALETAFLIKMME 725 (726)
Q Consensus 663 g~~D~~V~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~fl~~~l~ 725 (726)
|+.|..|+ ...+.++++++....+ .+.+++++-|..-...+. .+.+.+..+||.+++.
T Consensus 236 g~~D~vv~~~~~~~~~~~~~~~~~~-----~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 236 GGDDRVVDNVEGLARFFERAGSPDK-----ELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred cCCCccccCcHHHHHHHHhcCCCCc-----eEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 99999999 6777778777765432 233379999975442333 5667778899998764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-14 Score=151.48 Aligned_cols=246 Identities=14% Similarity=0.079 Sum_probs=168.3
Q ss_pred CEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCE-EEEEEecCCCCCceEEEEEcCCCCceeEEeee
Q 004866 134 KFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQA-LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEE 212 (726)
Q Consensus 134 ~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~-l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~ 212 (726)
.++||.+...|...++|+++|.++.....++.......+.|||||+. ++|+.... +..+||++++.+++...+. ..
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt-~~ 231 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIA-SS 231 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEe-cC
Confidence 56788776455556899999999887665554445567999999996 77776542 2348999999887644433 22
Q ss_pred cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecCcccCCCCCCe
Q 004866 213 SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEADNH 291 (726)
Q Consensus 213 ~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~ 291 (726)
. . ....+.|||||+.|++........+||++|+++ +..++++.... .....++|||+.++|.+++.+ ..
T Consensus 232 ~-g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g------~~ 301 (419)
T PRK04043 232 Q-G-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG------YP 301 (419)
T ss_pred C-C-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEEEcccCCCccCccEECCCCCEEEEEECCCC------Cc
Confidence 2 2 223478999999999998877778999999987 45677776543 455678999999999998753 36
Q ss_pred EEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeC------CeeEEEEEecCCCCCCcceeecccccccc
Q 004866 292 YLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREG------RTYRLCSVSLPLPAGKGVVHLKELHPHFL 365 (726)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~------g~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 365 (726)
.|+.++++ . +..+.++... .. ...+++.++.|+++.... +...|+++++++++ ... +
T Consensus 302 ~Iy~~dl~-~---g~~~rlt~~g-~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~--------L 364 (419)
T PRK04043 302 NIFMKKLN-S---GSVEQVVFHG-KN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRR--------L 364 (419)
T ss_pred eEEEEECC-C---CCeEeCccCC-Cc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEE--------C
Confidence 79999987 3 3444444322 22 236777889999888764 44689999987543 111 2
Q ss_pred cCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 366 PLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
.... .. ....+++|+..++|.... ..-..++.++++.+....+.
T Consensus 365 T~~~-~~---~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 365 TANG-VN---QFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCC-Cc---CCeEECCCCCEEEEEEcc-CCcEEEEEEecCCCeeEEee
Confidence 1111 11 123457888888887544 34457999999776555554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-14 Score=154.54 Aligned_cols=251 Identities=9% Similarity=0.047 Sum_probs=170.9
Q ss_pred CCCEEEEEEeCCCCc--EEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeE
Q 004866 132 DHKFLAYTMYDKDND--YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDAL 208 (726)
Q Consensus 132 DG~~la~~~~~~g~e--~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~l 208 (726)
=..+|||+.+..|.. .++|+++|.+++....++. ......+.|||||+.|+|+.... ...+||++++.++....+
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l 241 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELV 241 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEe
Confidence 356899998766532 6789999998887776655 34667899999999999997543 236899999987753333
Q ss_pred EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecCcccCCC
Q 004866 209 LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQE 287 (726)
Q Consensus 209 v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~ 287 (726)
. .... ....+.|||||+.|++........+||++|+++ +..+.++.... .....+++||+.++|.++..+
T Consensus 242 ~-~~~g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g---- 312 (435)
T PRK05137 242 G-NFPG--MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG---- 312 (435)
T ss_pred e-cCCC--cccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEEccCCCCccCceeEcCCCCEEEEEECCCC----
Confidence 2 1111 123578999999999988777778999999987 45666665433 234678899999999987653
Q ss_pred CCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccC
Q 004866 288 ADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL 367 (726)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (726)
..+|+.++++ . +..+.+........-..+++.++.|++.....+...|++++++++. .. .+..
T Consensus 313 --~~~Iy~~d~~-g---~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~--------~lt~ 375 (435)
T PRK05137 313 --SPQLYVMNAD-G---SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ER--------ILTS 375 (435)
T ss_pred --CCeEEEEECC-C---CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eE--------eccC
Confidence 3568888876 2 3345554332222223466677888888777777889999975432 11 1111
Q ss_pred CCceeeeecCCCCcCCCcEEEEEEccCCCC--ceEEEEECCCCeEEEEE
Q 004866 368 PKYVSQIVPGPNYDYYSSTMRFAISSPVMP--DAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P--~~~~~~d~~~~~~~~~~ 414 (726)
.... ....+++|+..++|+......+ ..+|.+|+.+++.+.+.
T Consensus 376 ~~~~----~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 376 GFLV----EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCCC----CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 1111 1344577888888877655553 58999999887766554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-14 Score=153.41 Aligned_cols=205 Identities=14% Similarity=0.070 Sum_probs=143.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||+....+ ..+|+++|+++|+...++. .+....+.|||||+.|+|+.... ...+||++++.+
T Consensus 206 v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~--g~~~Iy~~d~~~ 281 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD--GNPEIYVMDLGS 281 (433)
T ss_pred cccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC--CCceEEEEECCC
Confidence 557789999999999876544 4679999999998766654 33445789999999999986432 235899999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~ 281 (726)
+....+. .. ......+.|||||++|++.++..+..+||.+|+.+ +..+.++... ......++++|+.+++.+..
T Consensus 282 g~~~~lt-~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 282 RQLTRLT-NH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAERLTFQGNYNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred CCeEECc-cC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEeecCCCCccCEEECCCCCEEEEEECC
Confidence 7533322 11 11223578999999999998877778999999987 3455555322 22345788999999998764
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
++ .+.|+.+++. + +..+.+. ......-..++..++.|++.....|...|+.++++.
T Consensus 357 ~~------~~~I~v~d~~-~---g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 357 GG------QYRIAVMDLS-T---GSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CC------ceeEEEEECC-C---CCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 32 3678888876 2 3344343 221111124566677888888888888999998853
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=154.37 Aligned_cols=202 Identities=20% Similarity=0.237 Sum_probs=132.3
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch---------HHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR---------SELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~---------~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
||++|.+.|++| +...+++.|+||..++ |+........ .....|+++||+|+..|.||.|+++..|...
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tp-Y~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~ 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTP-YGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM 78 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEES-STCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccC-cCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC
Confidence 899999999999 4455689999998885 2321100011 1112399999999999999999998777643
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc-cccCCCC-CC-
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN-TLLYPIL-PL- 621 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~-~~~~~~~-~~- 621 (726)
..++.+|..++|+|+.++++.| .|||++|.||+|+..+.++.+.|...||++..++..|+.. ....... ..
T Consensus 79 -----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 79 -----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp -----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred -----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 5568999999999999998765 7999999999999999999988889999999999988876 2111111 00
Q ss_pred -Chhh-----hc-cc---CCCCC---------------------------------hhHHHHHHhcCcccccccCCCCCe
Q 004866 622 -IAAD-----YE-EF---GYPGD---------------------------------IDDFHAIRNYSPYDNIQKDVLYPA 658 (726)
Q Consensus 622 -~~~~-----~~-~~---g~~~~---------------------------------~~~~~~~~~~sp~~~i~~~~~~P~ 658 (726)
...+ .. .. ..+.. +..-+.+.+.++..++.+ ++.|+
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-i~vP~ 231 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDK-IDVPV 231 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG---SEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhh-CCCCE
Confidence 0011 00 00 00000 000122333344444555 89999
Q ss_pred EEEEecCCCCcChHHHHHHHHHHHhcC
Q 004866 659 VLVTSSFNTRFGVWEAAKWVARVREST 685 (726)
Q Consensus 659 lli~g~~D~~V~~~~~~~~~~~L~~~~ 685 (726)
|++.|-.|.... .++.+.+++|+..+
T Consensus 232 l~v~Gw~D~~~~-~~~~~~~~~l~~~~ 257 (272)
T PF02129_consen 232 LIVGGWYDTLFL-RGALRAYEALRAPG 257 (272)
T ss_dssp EEEEETTCSSTS-HHHHHHHHHHCTTS
T ss_pred EEecccCCcccc-hHHHHHHHHhhcCC
Confidence 999999996666 89999999999876
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8e-14 Score=152.84 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=118.7
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
..++|||||++|||+.+.+| ..+||++|+++++..+++. ......+.|||||++|+|+.... ...+||++++.++
T Consensus 265 ~~~~wSPDG~~La~~~~~~g--~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g 340 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDG--QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG--GKPQIYRVNLASG 340 (448)
T ss_pred CCeeECCCCCEEEEEEeCCC--CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC--CCceEEEEECCCC
Confidence 35789999999999887666 4689999999998877665 33456799999999999986432 2358999999877
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcc
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAK 283 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~ 283 (726)
+...+.+.. .+...+.|||||++|++........+||++|+++ +.++.++.........++++|+.++|.++.++
T Consensus 341 ~~~~Lt~~g---~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g 415 (448)
T PRK04792 341 KVSRLTFEG---EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--GAMQVLTSTRLDESPSVAPNGTMVIYSTTYQG 415 (448)
T ss_pred CEEEEecCC---CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--CCeEEccCCCCCCCceECCCCCEEEEEEecCC
Confidence 644444322 2223578999999999987766667899999988 45566664433344578899999999887653
Q ss_pred cCCCCCCeEEEEeeCC
Q 004866 284 EGQEADNHYLLRCPVD 299 (726)
Q Consensus 284 ~~~~~~~~~l~~~~~~ 299 (726)
...|+.++.+
T Consensus 416 ------~~~l~~~~~~ 425 (448)
T PRK04792 416 ------KQVLAAVSID 425 (448)
T ss_pred ------ceEEEEEECC
Confidence 2457777765
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=152.17 Aligned_cols=228 Identities=23% Similarity=0.171 Sum_probs=146.7
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-Cccc-hHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 471 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRW-RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 471 ~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~-~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
....+..+++.++.| ......+.|+|||+|||..... ...+ ......+...|+.|+.+|||-..+.
T Consensus 57 ~~~~~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~----------- 124 (312)
T COG0657 57 AGPSGDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH----------- 124 (312)
T ss_pred cCCCCCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------
Confidence 445566688888888 3234456899999999755432 2333 3334555668999999999976653
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCcccccccccCCCC--
Q 004866 549 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDATNTLLYPIL-- 619 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~~~~~~~~~-- 619 (726)
..+..++|+.+++.|+.++. -+|+++|+|+|+|+||.|++.++.+..+ ..++.++.+|.+|... . ....
T Consensus 125 ~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~ 202 (312)
T COG0657 125 PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPG 202 (312)
T ss_pred CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhh
Confidence 45578999999999999874 3799999999999999999998875432 4688999999998764 1 1111
Q ss_pred -----CCChhhhc----c-c-CCCCChhHHHHHHhcCcccccc-cCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCC
Q 004866 620 -----PLIAADYE----E-F-GYPGDIDDFHAIRNYSPYDNIQ-KDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIY 687 (726)
Q Consensus 620 -----~~~~~~~~----~-~-g~~~~~~~~~~~~~~sp~~~i~-~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~ 687 (726)
.+...... . + +...+... ...+|+.... . --.|+++++++.|...+ ++..+.++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~spl~~~~~~-~lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~ 275 (312)
T COG0657 203 YGEADLLDAAAILAWFADLYLGAAPDRED----PEASPLASDDLS-GLPPTLIQTAEFDPLRD--EGEAYAERLRAAGVP 275 (312)
T ss_pred cCCccccCHHHHHHHHHHHhCcCccccCC----CccCcccccccc-CCCCEEEEecCCCcchh--HHHHHHHHHHHcCCe
Confidence 01110000 0 0 11110000 1245554332 2 14566677777786666 999999999999964
Q ss_pred CCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHH
Q 004866 688 DPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIK 722 (726)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~ 722 (726)
..+..+++..|++.. .........++..|+..
T Consensus 276 ---~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 276 ---VELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred ---EEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 112228899998733 32233334455566653
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=141.22 Aligned_cols=183 Identities=15% Similarity=0.074 Sum_probs=127.3
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCC----CCCCcccccccccCCCCc-------HHHHHHH
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG----GGGKKWHHDGRRTKKLNS-------IKDFISC 560 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g----~~g~~~~~~~~~~~~~~~-------~~D~~~~ 560 (726)
.+.|+||++||..+. ...|......|...++.+..+.+||.. ..|..|+... ....... ...+.+.
T Consensus 14 ~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~~ 90 (232)
T PRK11460 14 PAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIET 90 (232)
T ss_pred CCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHHH
Confidence 456899999986443 245677788888877666666677643 2356776421 1111111 2334556
Q ss_pred HHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHH
Q 004866 561 ARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA 640 (726)
Q Consensus 561 ~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 640 (726)
++++.++..++++||+++|+|+||.+++.++.++|+++.++|+.+|.+. . .+..
T Consensus 91 i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~--------~------------~~~~------ 144 (232)
T PRK11460 91 VRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA--------S------------LPET------ 144 (232)
T ss_pred HHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc--------c------------cccc------
Confidence 6777767667889999999999999999999888998888876655211 0 0100
Q ss_pred HHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHH
Q 004866 641 IRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETA 718 (726)
Q Consensus 641 ~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~ 718 (726)
. ..+.|++++||..|+.||++.+.+++++|++++.+ +.+ ++++||.+.. ++.....+
T Consensus 145 ----------~-~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~-----~~~~~~~~~gH~i~~-----~~~~~~~~ 203 (232)
T PRK11460 145 ----------A-PTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGD-----VTLDIVEDLGHAIDP-----RLMQFALD 203 (232)
T ss_pred ----------c-cCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCC-----eEEEEECCCCCCCCH-----HHHHHHHH
Confidence 0 13578999999999999999999999999998742 333 7999997633 45555667
Q ss_pred HHHHhh
Q 004866 719 FLIKMM 724 (726)
Q Consensus 719 fl~~~l 724 (726)
||.+.|
T Consensus 204 ~l~~~l 209 (232)
T PRK11460 204 RLRYTV 209 (232)
T ss_pred HHHHHc
Confidence 777765
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=161.65 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=108.1
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-Cccc-hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRW-RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~-~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
++++||++|.+.++.|++ .++.|+||++||-..... ...+ ......|+++||+|+++|+||+|.++..+...+
T Consensus 1 i~~~DG~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~-- 75 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG-- 75 (550)
T ss_pred CcCCCCCEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC--
Confidence 357899999999999875 247899999996332210 0111 224568999999999999999998876543321
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT 613 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 613 (726)
....+|+.++++|+.++++.+ .||+++|+||||++++.++..+|+.++|+|+.+++.|+...
T Consensus 76 ---~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 76 ---SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred ---cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 458899999999999998877 79999999999999999999899999999999999887753
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-13 Score=145.31 Aligned_cols=248 Identities=11% Similarity=0.060 Sum_probs=163.9
Q ss_pred CEEEEEEeCCC-CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEee
Q 004866 134 KFLAYTMYDKD-NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLE 211 (726)
Q Consensus 134 ~~la~~~~~~g-~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~ 211 (726)
++|||+....+ ...++|+++|.+++....++. ......+.|||||+.|+|+.... ...+||++++.+++...+. .
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~-~ 240 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVA-S 240 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEcc-C
Confidence 78999876543 336799999999887766654 33567899999999999986532 2358999999876533332 2
Q ss_pred ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCCEEEEEecCcccCCCCCC
Q 004866 212 ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDAAKEGQEADN 290 (726)
Q Consensus 212 ~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~~~~~~~~~~ 290 (726)
... ....+.|||||++|++........+||++|+++ ++.+.++... ......++|||+.++|.++..+ .
T Consensus 241 ~~~--~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t--g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g------~ 310 (429)
T PRK03629 241 FPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG------R 310 (429)
T ss_pred CCC--CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEccCCCCCcCceEECCCCCEEEEEeCCCC------C
Confidence 111 123578999999999987766667899999987 4566666543 2345678899999999988653 2
Q ss_pred eEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCc
Q 004866 291 HYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKY 370 (726)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 370 (726)
.+|+.++++ . +..+.+........-..+++.++.|++....++...|+++++.++. . ..+..+..
T Consensus 311 ~~Iy~~d~~-~---g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------~-----~~Lt~~~~ 375 (429)
T PRK03629 311 PQVYKVNIN-G---GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------V-----QVLTDTFL 375 (429)
T ss_pred ceEEEEECC-C---CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC------e-----EEeCCCCC
Confidence 578888876 2 2334443222112223456667888888888888889999987542 1 11211111
Q ss_pred eeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 371 VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
. ....+++|+..+++.... .....++.+++..+..+.+.
T Consensus 376 ~----~~p~~SpDG~~i~~~s~~-~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 376 D----ETPSIAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred C----CCceECCCCCEEEEEEcC-CCceEEEEEECCCCCeEECc
Confidence 1 123456788877665543 22356888888666555554
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-14 Score=135.67 Aligned_cols=192 Identities=15% Similarity=0.178 Sum_probs=124.8
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH--HHHHHHH-CCcEEEEEccCCCCCCCC--cccccccccCCCCc
Q 004866 479 PLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS--ELKSLLD-RGWVVAFADVRGGGGGGK--KWHHDGRRTKKLNS 553 (726)
Q Consensus 479 ~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~-~G~~v~~~d~RG~g~~g~--~~~~~~~~~~~~~~ 553 (726)
.+.|+.|++.. .++.|+||.+||+.+.. ..|.. .+..|++ +||+|+.|+-........ .|.. .....+..+
T Consensus 2 ~Y~lYvP~~~~-~~~~PLVv~LHG~~~~a--~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d 77 (220)
T PF10503_consen 2 SYRLYVPPGAP-RGPVPLVVVLHGCGQSA--EDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGD 77 (220)
T ss_pred cEEEecCCCCC-CCCCCEEEEeCCCCCCH--HHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccc
Confidence 45678888653 35789999999975543 23322 3456777 699999999543322233 4444 222334456
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCC
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG 633 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~ 633 (726)
...+.+.+++++++.-+|++||.+.|.|+||.|+..++..+||+|+|+...+++.--.. ... ........-|...
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a---~~~--~~a~~~m~~g~~~ 152 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCA---ASG--ASALSAMRSGPRP 152 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccc---cCc--ccHHHHhhCCCCC
Confidence 66777889999998889999999999999999999999999999999888777532111 000 0000001112222
Q ss_pred ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhc
Q 004866 634 DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRES 684 (726)
Q Consensus 634 ~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~ 684 (726)
.+.........++ .. ...|.+++||..|..|.+..+.++.+.+...
T Consensus 153 ~p~~~~~a~~~~g--~~---~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAG--AY---PGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhcc--CC---CCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 2211111111111 11 2368999999999999999999999888764
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-14 Score=145.98 Aligned_cols=240 Identities=14% Similarity=0.152 Sum_probs=142.4
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
..+..+++.++-.+ ..|++++..|++ +++.|+||++-|. .+.....+.....+|+.+|++++.+|.+|.|... .
T Consensus 161 ~~~~i~~v~iP~eg-~~I~g~LhlP~~---~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~-~ 234 (411)
T PF06500_consen 161 SDYPIEEVEIPFEG-KTIPGYLHLPSG---EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESP-K 234 (411)
T ss_dssp SSSEEEEEEEEETT-CEEEEEEEESSS---SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGT-T
T ss_pred CCCCcEEEEEeeCC-cEEEEEEEcCCC---CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcccc-c
Confidence 35678999998754 899999988873 4788988887553 3322222333345788999999999999999742 1
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc-cccc-ccCCC
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD-ATNT-LLYPI 618 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d-~~~~-~~~~~ 618 (726)
|- .....-.=..++++||.+.+++|.+||+++|.|+||+.+..++..++++++|+|+..|+++ +++. .....
T Consensus 235 ~~------l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~ 308 (411)
T PF06500_consen 235 WP------LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQR 308 (411)
T ss_dssp T-------S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTT
T ss_pred CC------CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhc
Confidence 11 0111222346789999999999999999999999999999999878899999999988654 3321 11122
Q ss_pred CCCCh--hhhcccCCCC-C-hhHHHHHHhcCcccc--c-ccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCC
Q 004866 619 LPLIA--ADYEEFGYPG-D-IDDFHAIRNYSPYDN--I-QKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 619 ~~~~~--~~~~~~g~~~-~-~~~~~~~~~~sp~~~--i-~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 691 (726)
.|... ..-..+|... + ......+.++|-... + .++.++|+|.+.+..|+.+|.+++.-++ .-...| +
T Consensus 309 ~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia-~~s~~g-----k 382 (411)
T PF06500_consen 309 VPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIA-ESSTDG-----K 382 (411)
T ss_dssp S-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHH-HTBTT------E
T ss_pred CCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHH-hcCCCC-----c
Confidence 33210 1112345432 2 222344566776542 2 2336788888888889998888765443 222222 2
Q ss_pred cEEEEcCCC-CCCCchhhHHHHHHHHHHHHHHhh
Q 004866 692 PILLNLTTD-IVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 692 ~~~~~~~~g-H~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
... ++... | ....+....++.||...|
T Consensus 383 ~~~-~~~~~~~-----~gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 383 ALR-IPSKPLH-----MGYPQALDEIYKWLEDKL 410 (411)
T ss_dssp EEE-E-SSSHH-----HHHHHHHHHHHHHHHHHH
T ss_pred eee-cCCCccc-----cchHHHHHHHHHHHHHhc
Confidence 333 34333 5 334455667789999876
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=144.29 Aligned_cols=258 Identities=10% Similarity=0.101 Sum_probs=168.4
Q ss_pred EeeceeeCCCCCEEEEEEeCC--CCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDK--DNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~--g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+.+.... -.++|||+.... +.+.++|+++|.+++....++. ......+.|||||+.|+|+.... ...+||+++
T Consensus 153 ~ltg~~g~-f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~ 229 (430)
T PRK00178 153 KLTGIKGA-FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQN 229 (430)
T ss_pred HHhCCCcc-ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEE
Confidence 44454433 667799986543 2457899999999887665544 34567899999999999986542 235899999
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLF 278 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~ 278 (726)
+.++.... +..... ....+.|||||++|++.....+..+||++|+++ +..+.++.... ...+.+++||+.++|.
T Consensus 230 l~~g~~~~-l~~~~g--~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 230 LDTGRREQ-ITNFEG--LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSRVTNHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred CCCCCEEE-ccCCCC--CcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEEcccCCCCcCCeEECCCCCEEEEE
Confidence 98775333 222221 122478999999999988777778999999988 45566654332 3456788999999999
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeec
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLK 358 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~ 358 (726)
++..+ ...|+.+++. . ++++.+...........++..++.|++..+.++...|+++|+.++. ..
T Consensus 305 s~~~g------~~~iy~~d~~-~---g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~---~~--- 368 (430)
T PRK00178 305 SDRGG------KPQIYKVNVN-G---GRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS---VR--- 368 (430)
T ss_pred ECCCC------CceEEEEECC-C---CCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC---EE---
Confidence 87654 3568888876 2 3445554332222223466677899888877777789999987542 11
Q ss_pred ccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 359 ELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 359 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
.+...... ....+++++..++|+..... -..+|.++...+..+.+.
T Consensus 369 -----~lt~~~~~----~~p~~spdg~~i~~~~~~~g-~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 369 -----ILTDTSLD----ESPSVAPNGTMLIYATRQQG-RGVLMLVSINGRVRLPLP 414 (430)
T ss_pred -----EccCCCCC----CCceECCCCCEEEEEEecCC-ceEEEEEECCCCceEECc
Confidence 11111110 12245678888777654322 246899998665544443
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=145.40 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=135.8
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc--------------------cc----hHHHHHHHHCCcE
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK--------------------RW----RSELKSLLDRGWV 525 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~--------------------~~----~~~~~~l~~~G~~ 525 (726)
+.+.||..|....+.|+ .+..+|+.+||-.+..... .| ...+..|.++||.
T Consensus 2 ~~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~ 76 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYS 76 (332)
T ss_pred ccCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCc
Confidence 56789999988777664 2346899999843333100 11 3457899999999
Q ss_pred EEEEccCCCCCCCCcccccccccCCCCcHHHHHH----HHHHHHHc------------------CCCCCCcEEEEEeccc
Q 004866 526 VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS----CARFLIEK------------------EIVKEHKLAGWGYSAG 583 (726)
Q Consensus 526 v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~----~~~~l~~~------------------~~~d~~ri~i~G~S~G 583 (726)
|+.+|.||+|.+...-...+ ....++|+++ .++.+.+. .+-...++.|+|||||
T Consensus 77 V~~~D~rGHG~S~~~~~~~g----~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmG 152 (332)
T TIGR01607 77 VYGLDLQGHGESDGLQNLRG----HINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMG 152 (332)
T ss_pred EEEecccccCCCcccccccc----chhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCc
Confidence 99999999997542200001 1134555544 44443321 1111357999999999
Q ss_pred HHHHHHHHHcCCC--------ceeEEEEeCCcccccccc--------------------cCCCCCCCh-hhhc-------
Q 004866 584 GLLVAAAINCCPD--------LFRAVVLEVPFLDATNTL--------------------LYPILPLIA-ADYE------- 627 (726)
Q Consensus 584 G~l~~~~~~~~p~--------~f~a~v~~~p~~d~~~~~--------------------~~~~~~~~~-~~~~------- 627 (726)
|.+++.++..+++ .++++|+.+|++.+...- ..+.+.... .++.
T Consensus 153 g~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~ 232 (332)
T TIGR01607 153 GNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVND 232 (332)
T ss_pred cHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhh
Confidence 9999988765432 588999888876432100 001100000 0000
Q ss_pred cc-CCCC------ChhHHHHHHhcCc--ccccccCC--CCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEE
Q 004866 628 EF-GYPG------DIDDFHAIRNYSP--YDNIQKDV--LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLN 696 (726)
Q Consensus 628 ~~-g~~~------~~~~~~~~~~~sp--~~~i~~~~--~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 696 (726)
.+ -+|. .......+..... ...+.. + +.|+|+++|+.|..|++..+.++++++...+ ..+.++
T Consensus 233 ~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~-i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~-----~~l~~~ 306 (332)
T TIGR01607 233 IIKFDKFRYDGGITFNLASELIKATDTLDCDIDY-IPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISN-----KELHTL 306 (332)
T ss_pred HHhcCccccCCcccHHHHHHHHHHHHHHHhhHhh-CCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCC-----cEEEEE
Confidence 00 0010 0000111111100 012222 3 6899999999999999999998888775433 233337
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 697 LTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 697 ~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
++++|.........+..+.+.+||.
T Consensus 307 ~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 307 EDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHhh
Confidence 9999976543334455566788875
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=142.61 Aligned_cols=199 Identities=16% Similarity=0.091 Sum_probs=130.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..++|||||++|||+....+ ..+|+++|+.+|+...+.. .+....++|||||+.|+|+.... ...+||.+++.
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~--g~~~Iy~~d~~ 280 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD--GVLNIYVMGAN 280 (429)
T ss_pred ccccceEcCCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC--CcEEEEEEECC
Confidence 3567899999999999876433 4679999999997655443 33455799999999999985432 23579999997
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~ 281 (726)
++....+.. . ......+.|||||++|++.+++....+||.++..++ ..+.+. .. +....++|+|+.+++.+.
T Consensus 281 ~~~~~~lt~-~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~l~-~~-~~~~~~SpDG~~ia~~~~- 352 (429)
T PRK01742 281 GGTPSQLTS-G--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASLVG-GR-GYSAQISADGKTLVMING- 352 (429)
T ss_pred CCCeEeecc-C--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEec-CC-CCCccCCCCCCEEEEEcC-
Confidence 765333322 1 112346899999999999988777789999998763 334442 22 123457899999888754
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
. .++.+|+. .+.++.+... ....-..+++.++.|++...+++...+++++.+
T Consensus 353 ~---------~i~~~Dl~----~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 353 D---------NVVKQDLT----SGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred C---------CEEEEECC----CCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 1 25667765 2334433322 111112355556777777666665566666654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-12 Score=142.00 Aligned_cols=246 Identities=15% Similarity=0.167 Sum_probs=162.1
Q ss_pred CEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeee
Q 004866 134 KFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEE 212 (726)
Q Consensus 134 ~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~ 212 (726)
.+|||.....+ .++|+++|.++.....++. ...+..++|||||+.|+|+.... ...+||++++.++....+. ..
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~-~~ 238 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVA-NF 238 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEee-cC
Confidence 67999875433 5789999997766555543 44567899999999999986542 3357999999887533332 11
Q ss_pred cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecCcccCCCCCCe
Q 004866 213 SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEADNH 291 (726)
Q Consensus 213 ~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~ 291 (726)
.. ....+.|||||+.|++........+||.+|+.+ +..+.++.... .....+++||+.++|.++..+ ..
T Consensus 239 ~g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g------~~ 308 (427)
T PRK02889 239 KG--SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG------AP 308 (427)
T ss_pred CC--CccceEECCCCCEEEEEEccCCCceEEEEECCC--CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC------Cc
Confidence 11 223578999999999988777778999999977 34566654332 234678899999999887653 35
Q ss_pred EEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCce
Q 004866 292 YLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYV 371 (726)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 371 (726)
.|+.++++ . +..+.+........-..+++.+++|++....++...|+++++.++. ... +.-....
T Consensus 309 ~Iy~~~~~-~---g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~---~~~--------lt~~~~~ 373 (427)
T PRK02889 309 QIYRMPAS-G---GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ---VTA--------LTDTTRD 373 (427)
T ss_pred EEEEEECC-C---CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC---eEE--------ccCCCCc
Confidence 68888875 2 3344443222111123466677888888777777889999987543 111 1111111
Q ss_pred eeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 372 SQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
....+++|+..++|....-. -..++.++...+..+.+.
T Consensus 374 ----~~p~~spdg~~l~~~~~~~g-~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 374 ----ESPSFAPNGRYILYATQQGG-RSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ----cCceECCCCCEEEEEEecCC-CEEEEEEECCCCceEEee
Confidence 12345778888887765443 357899998654444443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=143.15 Aligned_cols=249 Identities=13% Similarity=0.134 Sum_probs=164.3
Q ss_pred CCEEEEEEeCCC--CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEE
Q 004866 133 HKFLAYTMYDKD--NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALL 209 (726)
Q Consensus 133 G~~la~~~~~~g--~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv 209 (726)
+++|||+....+ ...++|+++|.+++....++. ......+.|||||+.|+|++... ...+||++++.++.... +
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~-l 243 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQREL-V 243 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEE-e
Confidence 567899865432 346789999998877766654 44567899999999999986542 34589999998765332 2
Q ss_pred eeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecCcccCCCC
Q 004866 210 LEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEA 288 (726)
Q Consensus 210 ~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~ 288 (726)
.... . ....+.|||||+.|++.....+..+||++|+.+ ++.+.++.... .....+++||+.++|.++..+
T Consensus 244 ~~~~-g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~--g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----- 314 (433)
T PRK04922 244 ASFR-G-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS--RQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----- 314 (433)
T ss_pred ccCC-C-CccCceECCCCCEEEEEEeCCCCceEEEEECCC--CCeEECccCCCCccceEECCCCCEEEEEECCCC-----
Confidence 2211 1 223578999999999887766678999999987 44566654432 234678899999999988654
Q ss_pred CCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCC
Q 004866 289 DNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLP 368 (726)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p 368 (726)
..+|+.++++ . +..+.+........-..++..++.|++....++...|+++++.++. .. .+.-.
T Consensus 315 -~~~iy~~dl~-~---g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~--------~Lt~~ 378 (433)
T PRK04922 315 -RPQIYRVAAS-G---GSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VR--------TLTPG 378 (433)
T ss_pred -CceEEEEECC-C---CCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---eE--------ECCCC
Confidence 2568888876 2 3445444322111123566667888888777777789999986542 11 11111
Q ss_pred CceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 369 KYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
... ....+++|+..++|.... ..-..+|.+|...+..+.+.
T Consensus 379 ~~~----~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 379 SLD----ESPSFAPNGSMVLYATRE-GGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCC----CCceECCCCCEEEEEEec-CCceEEEEEECCCCceEEcc
Confidence 111 123456788888776554 33458999999766555554
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=129.03 Aligned_cols=216 Identities=14% Similarity=0.145 Sum_probs=153.6
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH-HHHHHHCCcEEEEEccCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE-LKSLLDRGWVVAFADVRGGGGGG 538 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~G~~v~~~d~RG~g~~g 538 (726)
..+..-|+++..++|.+++++|++.-+ ...|+++++|+..|.. +. +-+. .-.+.+.+..|++++|||.|.+.
T Consensus 49 ~~n~pye~i~l~T~D~vtL~a~~~~~E-----~S~pTlLyfh~NAGNm-Gh-r~~i~~~fy~~l~mnv~ivsYRGYG~S~ 121 (300)
T KOG4391|consen 49 EFNMPYERIELRTRDKVTLDAYLMLSE-----SSRPTLLYFHANAGNM-GH-RLPIARVFYVNLKMNVLIVSYRGYGKSE 121 (300)
T ss_pred ccCCCceEEEEEcCcceeEeeeeeccc-----CCCceEEEEccCCCcc-cc-hhhHHHHHHHHcCceEEEEEeeccccCC
Confidence 345677899999999999999988722 3679999999865532 22 2233 34566789999999999988653
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCC
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPI 618 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~ 618 (726)
..-.+. .-.-|-.++++||..+...|..+|.++|.|.||..+..++....++..|+|...-+..+...+..--
T Consensus 122 GspsE~-------GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v 194 (300)
T KOG4391|consen 122 GSPSEE-------GLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLV 194 (300)
T ss_pred CCcccc-------ceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhee
Confidence 332221 2357889999999999999999999999999999999999988999999998877766533221111
Q ss_pred CCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcC
Q 004866 619 LPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLT 698 (726)
Q Consensus 619 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 698 (726)
.|+.......+ .++ ..++.+..+.. -+.|.|++.|..|..|||.+..+++..+-.+.+ +... +|+
T Consensus 195 ~p~~~k~i~~l-------c~k--n~~~S~~ki~~-~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~K----rl~e-FP~ 259 (300)
T KOG4391|consen 195 FPFPMKYIPLL-------CYK--NKWLSYRKIGQ-CRMPFLFISGLKDELVPPVMMRQLYELCPSRTK----RLAE-FPD 259 (300)
T ss_pred ccchhhHHHHH-------HHH--hhhcchhhhcc-ccCceEEeecCccccCCcHHHHHHHHhCchhhh----hhee-CCC
Confidence 11111100000 011 02233334443 688999999999999999999999999877653 3333 799
Q ss_pred CCCCCC
Q 004866 699 TDIVEE 704 (726)
Q Consensus 699 ~gH~~~ 704 (726)
+.|...
T Consensus 260 gtHNDT 265 (300)
T KOG4391|consen 260 GTHNDT 265 (300)
T ss_pred CccCce
Confidence 999754
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=138.94 Aligned_cols=241 Identities=14% Similarity=0.095 Sum_probs=153.4
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC---CCccchHHHHHHHH-CCcEEEEEccCCCCCCC
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL---LDKRWRSELKSLLD-RGWVVAFADVRGGGGGG 538 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~---~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g 538 (726)
.....+.+... ..|+..|+.|.......+.|+|||+|||-... ..+.|......+++ .+.+|+.+|||-..+
T Consensus 61 v~~~dv~~~~~--~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE-- 136 (336)
T KOG1515|consen 61 VTSKDVTIDPF--TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE-- 136 (336)
T ss_pred ceeeeeEecCC--CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC--
Confidence 34455555443 45788889998765547899999999974321 23445555666655 699999999995544
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHc----CCCCCCcEEEEEecccHHHHHHHHHcC------CCceeEEEEeCCcc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEK----EIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFL 608 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~ 608 (726)
...+..++|..+++.|+.++ ..+|++||+|+|-|+||.+|..++.+. +-..++.|+..|++
T Consensus 137 ---------h~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~ 207 (336)
T KOG1515|consen 137 ---------HPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFF 207 (336)
T ss_pred ---------CCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEeccc
Confidence 45678999999999999986 457999999999999999998877542 34689999999998
Q ss_pred cccccccC------CCCC-CC----hhhhcccCCCCChhHHHHHHhcCccc-----ccccCCCCCeEEEEecCCCCcChH
Q 004866 609 DATNTLLY------PILP-LI----AADYEEFGYPGDIDDFHAIRNYSPYD-----NIQKDVLYPAVLVTSSFNTRFGVW 672 (726)
Q Consensus 609 d~~~~~~~------~~~~-~~----~~~~~~~g~~~~~~~~~~~~~~sp~~-----~i~~~~~~P~lli~g~~D~~V~~~ 672 (726)
........ ...+ .. ..+|. .-.|......+ -.-.+|.. ........|+|++.++.|... .
T Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~-~~lP~~~~~~~-~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D 283 (336)
T KOG1515|consen 208 QGTDRTESEKQQNLNGSPELARPKIDKWWR-LLLPNGKTDLD-HPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--D 283 (336)
T ss_pred CCCCCCCHHHHHhhcCCcchhHHHHHHHHH-HhCCCCCCCcC-CccccccccccccCccccCCCceEEEEeCchhhh--h
Confidence 76542211 0000 00 00111 11111000000 00012222 111112345888999999322 6
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHh
Q 004866 673 EAAKWVARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKM 723 (726)
Q Consensus 673 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~ 723 (726)
+...++++|++.|++. .++.++++.|++.. .....+.+....+|+...
T Consensus 284 ~~~~Y~~~Lkk~Gv~v---~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 284 EGLAYAEKLKKAGVEV---TLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhHHHHHHHHHcCCeE---EEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 8999999999999762 33338999998643 234555566667777653
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=140.59 Aligned_cols=244 Identities=18% Similarity=0.145 Sum_probs=143.3
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
.++..+...||..+.......+. ...+.|+||++||..+..........+..|+++||.|+.+|+||+|+.......
T Consensus 31 ~~~~~~~~~dg~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~- 107 (324)
T PRK10985 31 PYWQRLELPDGDFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR- 107 (324)
T ss_pred cceeEEECCCCCEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc-
Confidence 34445678899877654332221 223568999999976654322234466788999999999999999865322111
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc--eeEEEEeCCcccccccc--cCC---
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL--FRAVVLEVPFLDATNTL--LYP--- 617 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~p~~d~~~~~--~~~--- 617 (726)
.......+|+.++++++.++. ...++.++|+|+||.+++.++.++++. ++++|+.++..++.... ...
T Consensus 108 ---~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~ 182 (324)
T PRK10985 108 ---IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFS 182 (324)
T ss_pred ---eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHH
Confidence 111235799999999998752 336899999999999888777766543 77888877776543110 000
Q ss_pred ------------------------CCCCC---------hhhhcc-cCCCC--ChhHHHHHHhcCcccccccCCCCCeEEE
Q 004866 618 ------------------------ILPLI---------AADYEE-FGYPG--DIDDFHAIRNYSPYDNIQKDVLYPAVLV 661 (726)
Q Consensus 618 ------------------------~~~~~---------~~~~~~-~g~~~--~~~~~~~~~~~sp~~~i~~~~~~P~lli 661 (726)
..+.. ...+++ +..+. -....+++...++...+.+ ++.|+++|
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~-i~~P~lii 261 (324)
T PRK10985 183 RVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQ-IRKPTLII 261 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhC-CCCCEEEE
Confidence 00000 000000 00110 0112344555565555665 89999999
Q ss_pred EecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc-----hhhHHHHHHHHHHHHHHhhc
Q 004866 662 TSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 662 ~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-----~~~~~~~~~~~~~fl~~~l~ 725 (726)
+|..|+.+++.....+.+... + ..+.+.+++||..-- ....|-+ ..+.+|+...++
T Consensus 262 ~g~~D~~~~~~~~~~~~~~~~--~-----~~~~~~~~~GH~~~~~g~~~~~~~w~~-~~~~~~~~~~~~ 322 (324)
T PRK10985 262 HAKDDPFMTHEVIPKPESLPP--N-----VEYQLTEHGGHVGFVGGTLLKPQMWLE-QRIPDWLTTYLE 322 (324)
T ss_pred ecCCCCCCChhhChHHHHhCC--C-----eEEEECCCCCceeeCCCCCCCCCccHH-HHHHHHHHHhhc
Confidence 999999998766555422111 1 112226889996321 1223332 235788876653
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=143.33 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=98.1
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 543 (726)
..++..+...||..+....+.+.........|+||++||..++.....+......+.++||.|+++|+||+|+....
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~--- 146 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT--- 146 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC---
Confidence 44555677889988876544322111223468999999976654322223455667789999999999999975321
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc--eeEEEEeCCcccc
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL--FRAVVLEVPFLDA 610 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~p~~d~ 610 (726)
..........+|+.+++++|..+ + ...++.++|+|+||.+++..+.++|+. ++++++.++..++
T Consensus 147 -~~~~~~~~~~~Dl~~~i~~l~~~-~-~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l 212 (388)
T PLN02511 147 -TPQFYSASFTGDLRQVVDHVAGR-Y-PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDL 212 (388)
T ss_pred -CcCEEcCCchHHHHHHHHHHHHH-C-CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCH
Confidence 01111235678999999999865 2 235899999999999999999999986 6777777665554
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=134.34 Aligned_cols=237 Identities=12% Similarity=0.096 Sum_probs=138.3
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCC--ccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD--KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~--~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
.+.+.. +|..+.+.++.|.+. +.|.||++|||+..... ..+...+..|+++||.|+.+|+||+|.+....
T Consensus 4 ~~~~~~-~~~~l~g~~~~p~~~----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~--- 75 (274)
T TIGR03100 4 ALTFSC-EGETLVGVLHIPGAS----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN--- 75 (274)
T ss_pred eEEEEc-CCcEEEEEEEcCCCC----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC---
Confidence 456664 577899988888642 23567777887654321 22445578899999999999999999763221
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCC-----
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPIL----- 619 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~----- 619 (726)
.......+|+.++++++.++. ...++|.++|+|+||++++.++.. +..++++|+.+|.+...........
T Consensus 76 ---~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~~~ 150 (274)
T TIGR03100 76 ---LGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHYYL 150 (274)
T ss_pred ---CCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHHHH
Confidence 111235688999999998651 123679999999999999888764 5789999999987542210000000
Q ss_pred --CCC-hhhhccc-CCCCChhHHHHHHh----cCc-----c---------cccccCCCCCeEEEEecCCCCcChHH----
Q 004866 620 --PLI-AADYEEF-GYPGDIDDFHAIRN----YSP-----Y---------DNIQKDVLYPAVLVTSSFNTRFGVWE---- 673 (726)
Q Consensus 620 --~~~-~~~~~~~-g~~~~~~~~~~~~~----~sp-----~---------~~i~~~~~~P~lli~g~~D~~V~~~~---- 673 (726)
... ..+...+ |...-......+.. ..+ . ..+.. +..|+|+++|+.|...+...
T Consensus 151 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~P~ll~~g~~D~~~~~~~~~~~ 229 (274)
T TIGR03100 151 GQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLER-FQGPVLFILSGNDLTAQEFADSVL 229 (274)
T ss_pred HHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHh-cCCcEEEEEcCcchhHHHHHHHhc
Confidence 000 0000011 11100000111111 101 0 11223 68899999999996543221
Q ss_pred -HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 674 -AAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 674 -~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
+.++.+.+...++ .+..++++||.......+.+..+.+.+||.+
T Consensus 230 ~~~~~~~~l~~~~v-----~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 230 GEPAWRGALEDPGI-----ERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred cChhhHHHhhcCCe-----EEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 1333333443332 2222799999665555556666677889853
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=124.61 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcE
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKL 575 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 575 (726)
+||++||+.+. ...|....+.|+++||.|+.+|+|+.+... ...++.+.++++.+. ..++++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSD--------------GADAVERVLADIRAG-YPDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSH--------------HSHHHHHHHHHHHHH-HCTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccc--------------hhHHHHHHHHHHHhh-cCCCCcE
Confidence 58899997663 456788889999999999999999988641 112444445544322 2288999
Q ss_pred EEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCC
Q 004866 576 AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVL 655 (726)
Q Consensus 576 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~ 655 (726)
+++|+|+||.+++.++.+. ..++++|+.+|+.+ .+. +.+ .+
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~-------------------------~~~------------~~~-~~ 104 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD-------------------------SED------------LAK-IR 104 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG-------------------------CHH------------HTT-TT
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc-------------------------hhh------------hhc-cC
Confidence 9999999999999999987 78899998888311 001 112 46
Q ss_pred CCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q 004866 656 YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 702 (726)
Q Consensus 656 ~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 702 (726)
.|+++++|..|..+++++..+++++++.. ..++.+++++|+
T Consensus 105 ~pv~~i~g~~D~~~~~~~~~~~~~~~~~~------~~~~~i~g~~H~ 145 (145)
T PF12695_consen 105 IPVLFIHGENDPLVPPEQVRRLYEALPGP------KELYIIPGAGHF 145 (145)
T ss_dssp SEEEEEEETT-SSSHHHHHHHHHHHHCSS------EEEEEETTS-TT
T ss_pred CcEEEEEECCCCcCCHHHHHHHHHHcCCC------cEEEEeCCCcCc
Confidence 69999999999999999999999999832 123337999995
|
... |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-12 Score=133.83 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=90.3
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
...+.+...||..+...+. ..+ .+ ..|.||++||.+... ..|...+..|.++||.|+++|.||+|.+....
T Consensus 21 ~~~~~~~~~~~~~~~i~y~-~~G-~~--~~~~lvliHG~~~~~--~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~--- 91 (302)
T PRK00870 21 PHYVDVDDGDGGPLRMHYV-DEG-PA--DGPPVLLLHGEPSWS--YLYRKMIPILAAAGHRVIAPDLIGFGRSDKPT--- 91 (302)
T ss_pred ceeEeecCCCCceEEEEEE-ecC-CC--CCCEEEEECCCCCch--hhHHHHHHHHHhCCCEEEEECCCCCCCCCCCC---
Confidence 3445566666765554322 222 11 247899999975533 45777788888889999999999999753211
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
.....+++++.+.+..++++ .+.+++.++|||+||.+++.++.++|++++++|+.++.
T Consensus 92 ---~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 92 ---RREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---CcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 01123567776666666654 23468999999999999999999999999999988763
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=139.11 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=120.9
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
..++|||||++|||+.++.| ..+||++|+.++....++. .+....+.|||||++|+|++ ++.+++ +||++++...
T Consensus 241 ~~P~fspDG~~l~f~~~rdg--~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p-~I~~~~~~g~ 316 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDG--SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGRP-QIYLYDLEGS 316 (425)
T ss_pred CCccCCCCCCEEEEEECCCC--CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEe-CCCCCc-ceEEECCCCC
Confidence 46789999999999998876 5789999999998766655 44556899999999999994 555555 8999999887
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcc
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAK 283 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~ 283 (726)
+..++++...... .+.|||||++|++.....+...+...++.++.. .+.++.........+.++|+.+.+.++..+
T Consensus 317 ~~~riT~~~~~~~---~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~ 392 (425)
T COG0823 317 QVTRLTFSGGGNS---NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQGG 392 (425)
T ss_pred ceeEeeccCCCCc---CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccCCC
Confidence 7656655433222 578999999999998554446788888877432 666766665556677889999888877653
Q ss_pred cCCCCCCeEEEEeeCC
Q 004866 284 EGQEADNHYLLRCPVD 299 (726)
Q Consensus 284 ~~~~~~~~~l~~~~~~ 299 (726)
...|..++.+
T Consensus 393 ------~~~l~~~s~~ 402 (425)
T COG0823 393 ------GSVLSLVSLD 402 (425)
T ss_pred ------CceEEEeecc
Confidence 2456655554
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-14 Score=138.07 Aligned_cols=186 Identities=17% Similarity=0.140 Sum_probs=112.2
Q ss_pred EEEEcCCCCCCCC-ccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc---CCCC
Q 004866 497 LLHGHGAYGELLD-KRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK---EIVK 571 (726)
Q Consensus 497 vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 571 (726)
|||+|||...... .........|++ +|++|+.+|||-..+ ...+..++|+.++++|+.++ -..|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 7899997554322 233445667776 899999999996554 23456899999999999987 2368
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCcccccccc---c-----CCCCC-CChhhh----cccCCCCC
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDATNTL---L-----YPILP-LIAADY----EEFGYPGD 634 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~~~~---~-----~~~~~-~~~~~~----~~~g~~~~ 634 (726)
++||+|+|.|+||.|++.++.+..+ ..+++++.+|+.|+.... . ....+ +..... ..+- +..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 148 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYL-PGS 148 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHH-STG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999998865332 489999999998871100 0 00001 100000 0000 000
Q ss_pred hhHHHHHHhcCcccccccCCCCCeE-EEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCC
Q 004866 635 IDDFHAIRNYSPYDNIQKDVLYPAV-LVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 703 (726)
Q Consensus 635 ~~~~~~~~~~sp~~~i~~~~~~P~l-li~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 703 (726)
.. .-...||+.. ......|++ +++|+.|.. ..++.+|+++|+++|++ ..+.++++.+|++
T Consensus 149 ~~---~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l--~~~~~~~~~~L~~~gv~---v~~~~~~g~~H~f 209 (211)
T PF07859_consen 149 DR---DDPLASPLNA-SDLKGLPPTLIIHGEDDVL--VDDSLRFAEKLKKAGVD---VELHVYPGMPHGF 209 (211)
T ss_dssp GT---TSTTTSGGGS-SCCTTCHEEEEEEETTSTT--HHHHHHHHHHHHHTT-E---EEEEEETTEETTG
T ss_pred cc---cccccccccc-cccccCCCeeeeccccccc--hHHHHHHHHHHHHCCCC---EEEEEECCCeEEe
Confidence 00 0013466654 111235555 555555543 46899999999999853 1222289999974
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-12 Score=131.45 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=122.0
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcH
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 554 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 554 (726)
...+++.|++|.. .+++|+||++||+... ...|......|+++||+|+++|++|.+.. .....+
T Consensus 36 ~~~~p~~v~~P~~---~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 36 SPPKPLLVATPSE---AGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCCceEEEEeCCC---CCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 3568999999974 3678999999997553 34567778889999999999999874321 112356
Q ss_pred HHHHHHHHHHHHc--------CCCCCCcEEEEEecccHHHHHHHHHcCCC-----ceeEEEEeCCcccccccccCCCCCC
Q 004866 555 KDFISCARFLIEK--------EIVKEHKLAGWGYSAGGLLVAAAINCCPD-----LFRAVVLEVPFLDATNTLLYPILPL 621 (726)
Q Consensus 555 ~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~ 621 (726)
+|..++++|+.+. ...|++|++|+|||+||++++.++..+++ .|+++|+..|+...... ..
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~--~~---- 173 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKG--KQ---- 173 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccc--cC----
Confidence 7777778887752 23577999999999999999999988774 57888888887543210 00
Q ss_pred ChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCC-----Cc----ChH-HHHHHHHHHHhcCCCCCCC
Q 004866 622 IAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNT-----RF----GVW-EAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 622 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~-----~V----~~~-~~~~~~~~L~~~~~~~~~~ 691 (726)
..|. . ..+.|- .. ++..|.|++.++.|. .+ |.. +-.+|+++++...
T Consensus 174 --------~~p~---i----l~~~~~--s~-~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~------ 229 (313)
T PLN00021 174 --------TPPP---V----LTYAPH--SF-NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPA------ 229 (313)
T ss_pred --------CCCc---c----cccCcc--cc-cCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCe------
Confidence 0111 0 111111 11 257899999888763 22 233 3377888877532
Q ss_pred cEEEEcCCCCCC
Q 004866 692 PILLNLTTDIVE 703 (726)
Q Consensus 692 ~~~~~~~~gH~~ 703 (726)
..++.+++||..
T Consensus 230 ~~~~~~~~gH~~ 241 (313)
T PLN00021 230 VHFVAKDYGHMD 241 (313)
T ss_pred eeeeecCCCcce
Confidence 222267888864
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=135.74 Aligned_cols=208 Identities=13% Similarity=0.058 Sum_probs=118.1
Q ss_pred ccEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWR---SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~---~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
.|.||++||..... ..|. ..+..|++.||.|+++|+||+|.+...... ........+|+.+.++.+
T Consensus 30 ~~~ivllHG~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~---~~~~~~~~~~l~~~l~~l------ 98 (282)
T TIGR03343 30 GEAVIMLHGGGPGA--GGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL------ 98 (282)
T ss_pred CCeEEEECCCCCch--hhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCc---ccccchhHHHHHHHHHHc------
Confidence 46799999965433 2333 234567788999999999999976432110 000111234444444332
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC-C-----------CCCCC---hhhhccc-CCC-C
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY-P-----------ILPLI---AADYEEF-GYP-G 633 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-~-----------~~~~~---~~~~~~~-g~~-~ 633 (726)
+.+++.++|+|+||.+++.++.++|++++++|+.+|.......... . ..+.. ......+ -++ .
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 4579999999999999999999999999999998774211000000 0 00000 0000000 000 0
Q ss_pred -C--------------hhHHHHH-Hh--cCcc------cccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCC
Q 004866 634 -D--------------IDDFHAI-RN--YSPY------DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDP 689 (726)
Q Consensus 634 -~--------------~~~~~~~-~~--~sp~------~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 689 (726)
. ++....+ .. ..++ ..+.+ ++.|+|+++|+.|..|++..+.++++.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~----- 252 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGE-IKAKTLVTWGRDDRFVPLDHGLKLLWNMPDA----- 252 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhh-CCCCEEEEEccCCCcCCchhHHHHHHhCCCC-----
Confidence 0 0111111 11 1111 22344 8899999999999999999998888877532
Q ss_pred CCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 690 KRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 690 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
..++ .+++||+... ++.........+||.
T Consensus 253 -~~~~-i~~agH~~~~-e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 253 -QLHV-FSRCGHWAQW-EHADAFNRLVIDFLR 281 (282)
T ss_pred -EEEE-eCCCCcCCcc-cCHHHHHHHHHHHhh
Confidence 2233 6899997533 122222334457764
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=139.76 Aligned_cols=144 Identities=23% Similarity=0.254 Sum_probs=93.4
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC------------CCcc----chHHHHHHHHCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL------------LDKR----WRSELKSLLDRG 523 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~------------~~~~----~~~~~~~l~~~G 523 (726)
.+.|..|.+.|.+.++..++++|+.|++. +++.|+||++||-.+.. .... .......|+++|
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~G 160 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRG 160 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCC
Confidence 45789999999999999999999999975 57899999888721110 0000 123467899999
Q ss_pred cEEEEEccCCCCCCCCcccccc-----------------cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHH
Q 004866 524 WVVAFADVRGGGGGGKKWHHDG-----------------RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLL 586 (726)
Q Consensus 524 ~~v~~~d~RG~g~~g~~~~~~~-----------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l 586 (726)
|+|+++|.+|.|+.|..=.... .-..+...++| +.+++||.+++.+|++|||++|+|+||+.
T Consensus 161 YVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~dd-mr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 161 YVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDD-MRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp SEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHH-HHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHH-HHHHHHHhcCcccCccceEEEeecccHHH
Confidence 9999999999998765321111 11112223444 56999999999999999999999999999
Q ss_pred HHHHHHcCCCceeEEEEeCCc
Q 004866 587 VAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 587 ~~~~~~~~p~~f~a~v~~~p~ 607 (726)
++++++. .++++|+|+.+=+
T Consensus 240 a~~LaAL-DdRIka~v~~~~l 259 (390)
T PF12715_consen 240 AWWLAAL-DDRIKATVANGYL 259 (390)
T ss_dssp HHHHHHH--TT--EEEEES-B
T ss_pred HHHHHHc-chhhHhHhhhhhh
Confidence 9999986 5677887765444
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=132.25 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=124.7
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
+.|+||++||..+.. ..|...+..| .+||.|+++|+||+|.+.... .....++|+...+..++++ .+.
T Consensus 12 ~~~~iv~lhG~~~~~--~~~~~~~~~l-~~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGSG--SYWAPQLDVL-TQRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--LNI 79 (257)
T ss_pred CCCEEEEEcCCCcch--hHHHHHHHHH-HhccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--hCC
Confidence 468899999976543 3455554444 568999999999999764321 1123566666666655543 345
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc-----------ccCCCCCCC----------hhhhcc---
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT-----------LLYPILPLI----------AADYEE--- 628 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-----------~~~~~~~~~----------~~~~~~--- 628 (726)
.++.++|+|+||++++.++.++|+.++++|+.+++...... +........ ..+...
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENAA 159 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccch
Confidence 78999999999999999999999999999988775432110 000000000 000000
Q ss_pred ---------cCCC-CChh---HHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE
Q 004866 629 ---------FGYP-GDID---DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL 695 (726)
Q Consensus 629 ---------~g~~-~~~~---~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 695 (726)
.... .... ....+..++....+.. ++.|+++++|..|..+|+.++.++++.+... .+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~~~~ 231 (257)
T TIGR03611 160 RLAADEAHALAHFPGKANVLRRINALEAFDVSARLDR-IQHPVLLIANRDDMLVPYTQSLRLAAALPNA-------QLKL 231 (257)
T ss_pred hhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcc-cCccEEEEecCcCcccCHHHHHHHHHhcCCc-------eEEE
Confidence 0000 0000 0111222333344554 7899999999999999999998888776432 2222
Q ss_pred EcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 696 NLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
.+++||...- ++..+......+||.
T Consensus 232 ~~~~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 232 LPYGGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred ECCCCCCccc-cCHHHHHHHHHHHhc
Confidence 6899997433 122222333456653
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-11 Score=131.03 Aligned_cols=251 Identities=12% Similarity=0.084 Sum_probs=162.0
Q ss_pred CCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeE
Q 004866 130 SPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDAL 208 (726)
Q Consensus 130 SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~l 208 (726)
.+.+.+++|.....+.....|+++|.+++....++. ......+.|||||+.|+|+.... ...+||++++.++....+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKV 229 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEe
Confidence 456788999876544557889999998776665544 23466789999999999986543 236899999987653222
Q ss_pred EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecCcccCCC
Q 004866 209 LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQE 287 (726)
Q Consensus 209 v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~ 287 (726)
. .. .. ....+.|||||+.|++........+||++|+.+ +..+.+..... .....++++|+.|++.++..+
T Consensus 230 ~-~~-~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g---- 300 (417)
T TIGR02800 230 A-SF-PG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG---- 300 (417)
T ss_pred e-cC-CC-CccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----
Confidence 2 11 11 122478999999999987776678999999987 34455544322 224567789999999887653
Q ss_pred CCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccC
Q 004866 288 ADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL 367 (726)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (726)
...|+.+++. . ..++.+........-..+...++.|++....++..+|+++++.++. + ..+..
T Consensus 301 --~~~iy~~d~~-~---~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~----~-------~~l~~ 363 (417)
T TIGR02800 301 --SPQIYMMDAD-G---GEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG----E-------RVLTD 363 (417)
T ss_pred --CceEEEEECC-C---CCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC----e-------EEccC
Confidence 2468888876 2 3445554332222222445556788888777777899999986532 1 11111
Q ss_pred CCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEE
Q 004866 368 PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNII 413 (726)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~ 413 (726)
+... ....+++++..+++....... ..++.++...+..+.+
T Consensus 364 ~~~~----~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 364 TGLD----ESPSFAPNGRMILYATTRGGR-GVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCC----CCceECCCCCEEEEEEeCCCc-EEEEEEECCCceeeEC
Confidence 1111 122456788888777665443 5777777655444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-12 Score=126.05 Aligned_cols=188 Identities=12% Similarity=0.033 Sum_probs=107.3
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHH-HHHHCCcEEEEEccCC---CCCCCC---cccccccccCC-CCcHHHHHH----
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELK-SLLDRGWVVAFADVRG---GGGGGK---KWHHDGRRTKK-LNSIKDFIS---- 559 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~d~RG---~g~~g~---~~~~~~~~~~~-~~~~~D~~~---- 559 (726)
+..|+||++||- |..- ..+..... .+......++.|+-+- ....|. +|+........ ....+++..
T Consensus 12 ~~~~lvi~LHG~-G~~~-~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~ 89 (216)
T PF02230_consen 12 KAKPLVILLHGY-GDSE-DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAER 89 (216)
T ss_dssp T-SEEEEEE--T-TS-H-HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHH
T ss_pred CCceEEEEECCC-CCCc-chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHH
Confidence 467999999984 4322 22222222 1223577788776542 112233 78754322221 122333332
Q ss_pred ---HHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChh
Q 004866 560 ---CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDID 636 (726)
Q Consensus 560 ---~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 636 (726)
.++.+++.+ ++++||++.|.|.||.|++.++.++|+.|.++|+.+|.+-.... + ..
T Consensus 90 l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~---------------~--~~--- 148 (216)
T PF02230_consen 90 LDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE---------------L--ED--- 148 (216)
T ss_dssp HHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------C--HC---
T ss_pred HHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------c--cc---
Confidence 233333334 89999999999999999999999999999999998886532210 0 00
Q ss_pred HHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHH
Q 004866 637 DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESA 714 (726)
Q Consensus 637 ~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~ 714 (726)
......+.|++++||..|+.||...+++.++.|++++. .+.+ |++.||.. ..++..
T Consensus 149 ------------~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~-----~v~~~~~~g~gH~i-----~~~~~~ 206 (216)
T PF02230_consen 149 ------------RPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGA-----NVEFHEYPGGGHEI-----SPEELR 206 (216)
T ss_dssp ------------CHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT------GEEEEEETT-SSS-------HHHHH
T ss_pred ------------cccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCC-----CEEEEEcCCCCCCC-----CHHHHH
Confidence 00111257999999999999999999999999999884 3444 88899964 335666
Q ss_pred HHHHHHHHhh
Q 004866 715 LETAFLIKMM 724 (726)
Q Consensus 715 ~~~~fl~~~l 724 (726)
+..+||.+++
T Consensus 207 ~~~~~l~~~~ 216 (216)
T PF02230_consen 207 DLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHhhhC
Confidence 6779998764
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=115.15 Aligned_cols=197 Identities=14% Similarity=0.216 Sum_probs=128.9
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEE--EcCCCCCCCCcc-chHHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLH--GHGAYGELLDKR-WRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~--~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
..+.+...-| .+.+. +-|.+ . ...|+.|. .|--+++.+.+. -......|.++||+++.+|+||-|.+
T Consensus 5 ~~v~i~Gp~G-~le~~-~~~~~-~--~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S----- 74 (210)
T COG2945 5 PTVIINGPAG-RLEGR-YEPAK-T--PAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS----- 74 (210)
T ss_pred CcEEecCCcc-cceec-cCCCC-C--CCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc-----
Confidence 4466777766 45553 33333 2 23455554 444444444332 23445778889999999999999987
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCC
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 622 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 622 (726)
+|..+.|..+.+|..++++||.++.- +..-..+.|.|.|+++++.++.+.|+. ...++..|.++...+
T Consensus 75 -~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~~df--------- 142 (210)
T COG2945 75 -QGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINAYDF--------- 142 (210)
T ss_pred -cCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCchhh---------
Confidence 45556678899999999999998743 222347899999999999999988774 344555565541100
Q ss_pred hhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q 004866 623 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 702 (726)
Q Consensus 623 ~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 702 (726)
| .+.. ...|.++|+|..|+.|.+....++++. +. .+++..++++|+
T Consensus 143 ----------------------s---~l~P-~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~-------~~~i~i~~a~HF 188 (210)
T COG2945 143 ----------------------S---FLAP-CPSPGLVIQGDADDVVDLVAVLKWQES-IK-------ITVITIPGADHF 188 (210)
T ss_pred ----------------------h---hccC-CCCCceeEecChhhhhcHHHHHHhhcC-CC-------CceEEecCCCce
Confidence 0 0111 356889999999999988888887665 21 233337999999
Q ss_pred CCchhhHHHHHHHHHHHH
Q 004866 703 EENRYLQCKESALETAFL 720 (726)
Q Consensus 703 ~~~~~~~~~~~~~~~~fl 720 (726)
+..+-..+. ..+.+||
T Consensus 189 F~gKl~~l~--~~i~~~l 204 (210)
T COG2945 189 FHGKLIELR--DTIADFL 204 (210)
T ss_pred ecccHHHHH--HHHHHHh
Confidence 866322222 2245666
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-12 Score=121.79 Aligned_cols=183 Identities=14% Similarity=0.020 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCCCCCccchH--HHHHHHH--CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 495 PGLLHGHGAYGELLDKRWRS--ELKSLLD--RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~--~~~~l~~--~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
|.||++||..++. ..|.. ....|.+ .+|.|+.+|.||++ ++..+.+..++++.
T Consensus 2 p~illlHGf~ss~--~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSP--RSAKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCc--chHHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHc--
Confidence 6899999965543 23443 2344544 38999999999863 24555666666542
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCccccc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNI 650 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i 650 (726)
+.+++.++|+|+||++++.++.++|. + +|+.+|.++.......- .......+..-..+.+.+.++.++++.+.. +
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-i 133 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDY-LGENENPYTGQQYVLESRHIYDLKVMQIDP-L 133 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHh-cCCcccccCCCcEEEcHHHHHHHHhcCCcc-C
Confidence 23689999999999999999999884 3 46777777643211100 000000010001112334555566555444 3
Q ss_pred ccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHH
Q 004866 651 QKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFL 720 (726)
Q Consensus 651 ~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 720 (726)
. ...|++++||..|..||+.++.+++++.+ .+ ++++++|.+.+.+ +....+.+||
T Consensus 134 ~--~~~~v~iihg~~De~V~~~~a~~~~~~~~---------~~-~~~ggdH~f~~~~---~~~~~i~~fl 188 (190)
T PRK11071 134 E--SPDLIWLLQQTGDEVLDYRQAVAYYAACR---------QT-VEEGGNHAFVGFE---RYFNQIVDFL 188 (190)
T ss_pred C--ChhhEEEEEeCCCCcCCHHHHHHHHHhcc---------eE-EECCCCcchhhHH---HhHHHHHHHh
Confidence 3 46678899999999999999999998431 22 3699999885542 2333445665
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=128.02 Aligned_cols=242 Identities=10% Similarity=0.056 Sum_probs=151.3
Q ss_pred CCEEEEEEeCCC-CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEe
Q 004866 133 HKFLAYTMYDKD-NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLL 210 (726)
Q Consensus 133 G~~la~~~~~~g-~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~ 210 (726)
+++|||+....+ ...++|+++|.+++....++. ...+..+.|||||+.|+|+..+. ...+||++++.+++...+.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~- 244 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVA- 244 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEe-
Confidence 688999876543 346899999998877655544 34578899999999999987543 2457999999876533322
Q ss_pred eecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecCcccCCCCC
Q 004866 211 EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEAD 289 (726)
Q Consensus 211 ~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~~ 289 (726)
.... ....+.|||||++|++.....+..+||++|+.+ +..+.++.... .....+++||+.+++.++..+
T Consensus 245 ~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g------ 314 (429)
T PRK01742 245 SFRG--HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG------ 314 (429)
T ss_pred cCCC--ccCceeECCCCCEEEEEEecCCcEEEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCC------
Confidence 1111 123578999999999987666667899999977 44566655432 335678899999999987654
Q ss_pred CeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCC
Q 004866 290 NHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK 369 (726)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 369 (726)
+.+|+.++.. . . ...++... .. ...+.+.++.|++... ..++++|+.++. ...+ .-+.
T Consensus 315 ~~~I~~~~~~-~---~-~~~~l~~~-~~-~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~---~~~l--------t~~~ 372 (429)
T PRK01742 315 SPQVYRMSAS-G---G-GASLVGGR-GY-SAQISADGKTLVMING----DNVVKQDLTSGS---TEVL--------SSTF 372 (429)
T ss_pred CceEEEEECC-C---C-CeEEecCC-CC-CccCCCCCCEEEEEcC----CCEEEEECCCCC---eEEe--------cCCC
Confidence 3578888765 2 1 12233222 12 1245566677776643 346677876542 0111 1000
Q ss_pred ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 370 YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
.. ....+++++..+++..+ ...-..++.++...+..+.+.
T Consensus 373 ~~----~~~~~sPdG~~i~~~s~-~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 373 LD----ESPSISPNGIMIIYSST-QGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CC----CCceECCCCCEEEEEEc-CCCceEEEEEECCCCceEEcc
Confidence 00 12345677877766543 333345566666555455553
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-11 Score=125.19 Aligned_cols=104 Identities=23% Similarity=0.157 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|+||++||..+.. ..|......|. ++|.|+.+|+||+|.+.... ....+++++.+.+..++++- +.+
T Consensus 28 ~~~vv~~hG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGAST--HSWRDLMPPLA-RSFRVVAPDLPGHGFTRAPF-------RFRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCCH--HHHHHHHHHHh-hCcEEEeecCCCCCCCCCcc-------ccCCCHHHHHHHHHHHHHHc--CCC
Confidence 47899999975532 45666666664 47999999999998753221 11346778877777777642 336
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
++.|+|+|+||.+++.++.++|++++++|+.++...
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~ 131 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALM 131 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCccc
Confidence 789999999999999999999999998888776543
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=128.06 Aligned_cols=109 Identities=21% Similarity=0.203 Sum_probs=80.8
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.||++||..++. ..|......|.++ |.|+++|.||+|.+...-... .......+++|+...+..++++-. .+
T Consensus 29 ~~~vlllHG~~~~~--~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~-~~~~~~~~~~~~a~~l~~~l~~l~--~~ 102 (294)
T PLN02824 29 GPALVLVHGFGGNA--DHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRS-APPNSFYTFETWGEQLNDFCSDVV--GD 102 (294)
T ss_pred CCeEEEECCCCCCh--hHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccc-ccccccCCHHHHHHHHHHHHHHhc--CC
Confidence 37899999976654 4678888888776 699999999999764320000 000123467777777776665432 37
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.++|||+||.+++.++.++|++++++|+.+|..
T Consensus 103 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 103 PAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred CeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 89999999999999999999999999999988754
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=124.05 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=149.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc-------------------ccceeEEecCCCEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV-------------------RVSNIAWAKDGQALIYV 184 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~-------------------~~~~~~WspDg~~l~y~ 184 (726)
+..+.|||||++|||+.+ + +||+.++.+++.++++..+ ....+.|||||++|+|.
T Consensus 45 ~~~~~~sP~g~~~~~v~~--~----nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRD--N----NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp BSEEEE-SSSTEEEEEET--T----EEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccceeecCCCeeEEEec--C----ceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 456789999999999963 2 5999999999887766421 23568899999999999
Q ss_pred EecCCCC-------------------------------CceEEEEEcCCCCceeEEee---ecCCceEEEEEEcCCCcEE
Q 004866 185 VTDQNKR-------------------------------PYQIYCSIIGSTDEDALLLE---ESNENVYVNIRHTKDFHFV 230 (726)
Q Consensus 185 ~~~~~~~-------------------------------~~~l~~~~l~t~~~~~lv~~---~~d~~~~~~~~~s~Dg~~l 230 (726)
+.|+..- ..+|+++++.+++...+-.. .....+...+.|++|++.|
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 8876420 02466677766653222211 2344566789999999955
Q ss_pred EEEE-cCCC-ceEEEEEeCCCCCCCeEEeeccC-Cc-----eEEee-eecCCEEEEEecCcccCCCCCCeEEEEeeCCCC
Q 004866 231 CVHT-FSTT-SSKVFLINAADPFSGLTLIWECE-GL-----AHCIV-EHHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS 301 (726)
Q Consensus 231 ~~~~-~~~~-~~~l~~~d~~~~~~~~~~l~~~~-~~-----~~~~~-~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~ 301 (726)
++.. ++.. ...++++|+.++. .+.+.... .+ ....+ .++++.+++++.+++ -..|+.++.+ .
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~--~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G------~~hly~~~~~-~ 269 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGE--TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG------YRHLYLYDLD-G 269 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTT--CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS------SEEEEEEETT-S
T ss_pred EEEEcccCCCEEEEEEEECCCCc--eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC------CcEEEEEccc-c
Confidence 5544 4443 4788899998743 33333221 11 11222 267888888888654 2678998886 2
Q ss_pred CCCCCceEEeecCCCc-eEEEEeeeCCEEEEEEEeCC--eeEEEEEecC-CCCCCcceeecccccccccCCCce-eeeec
Q 004866 302 FPSRTWESVFIDDQGL-VVEDVDFCKTHMALILREGR--TYRLCSVSLP-LPAGKGVVHLKELHPHFLPLPKYV-SQIVP 376 (726)
Q Consensus 302 ~~~~~~~~v~~~~~~~-~l~~~~~~~~~lv~~~~~~g--~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~ 376 (726)
+..+.|+.+..++ .+..++..++.|+++...++ ..+|++++++ .+. .. .+.-.... .++
T Consensus 270 ---~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~--------~LT~~~~~~~~~-- 333 (353)
T PF00930_consen 270 ---GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PK--------CLTCEDGDHYSA-- 333 (353)
T ss_dssp ---SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EE--------ESSTTSSTTEEE--
T ss_pred ---cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eE--------eccCCCCCceEE--
Confidence 2234444444333 34556666789999887743 5689999987 332 11 12211111 122
Q ss_pred CCCCcCCCcEEEEEEccCCCCc
Q 004866 377 GPNYDYYSSTMRFAISSPVMPD 398 (726)
Q Consensus 377 ~~~~~~~~~~~~~~~ss~~~P~ 398 (726)
.++++++.++.+++++.+|+
T Consensus 334 --~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 334 --SFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp --EE-TTSSEEEEEEESSSSCE
T ss_pred --EECCCCCEEEEEEcCCCCCC
Confidence 34678999999999999995
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-11 Score=125.36 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=84.6
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.++.+... +..|.||++||.+++. ..|......|++++ .|+++|.||+|.+...- ...
T Consensus 14 ~~g~~i~y~~~--------G~g~~vvllHG~~~~~--~~w~~~~~~L~~~~-~via~D~~G~G~S~~~~--------~~~ 74 (295)
T PRK03592 14 VLGSRMAYIET--------GEGDPIVFLHGNPTSS--YLWRNIIPHLAGLG-RCLAPDLIGMGASDKPD--------IDY 74 (295)
T ss_pred ECCEEEEEEEe--------CCCCEEEEECCCCCCH--HHHHHHHHHHhhCC-EEEEEcCCCCCCCCCCC--------CCC
Confidence 37777664321 1237899999987644 46777778888886 99999999999764321 113
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
++++..+.+..++++- ..+++.++|+|+||.+++.++.++|++++++|+.+++
T Consensus 75 ~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 75 TFADHARYLDAWFDAL--GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CHHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 5666666666665542 3378999999999999999999999999999998874
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-12 Score=120.86 Aligned_cols=169 Identities=17% Similarity=0.090 Sum_probs=118.2
Q ss_pred CCCcEEEEEEEEcCCCCCCCCc-cEEEEEcCCCCCCCCccchHH-----HHHH--HHCCcEEEEEccCCCCCCCCccccc
Q 004866 473 HDGISVPLTIIYSPKYKKENQN-PGLLHGHGAYGELLDKRWRSE-----LKSL--LDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~-P~vl~~hGg~~~~~~~~~~~~-----~~~l--~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
.-|.+|++.++.|++..+++++ |++|+.||+-....+. .... ...+ -+-++.|++|.|- .-|...
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-~~~l~sg~gaiawa~pedqcfVlAPQy~------~if~d~ 241 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-DKVLSSGIGAIAWAGPEDQCFVLAPQYN------PIFADS 241 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchh-hhhhhcCccceeeecccCceEEEccccc------cccccc
Confidence 4677999999999999999888 9999999964433211 1110 0111 1235666666632 111111
Q ss_pred ccccCCCCcHHHHHHHHH-HHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCCh
Q 004866 545 GRRTKKLNSIKDFISCAR-FLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIA 623 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~ 623 (726)
..+-.+...-.++.++ -|.++..+|.+||.+.|.|+||+++.+++.++|+.|+|++..+|--|-
T Consensus 242 --e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------------- 306 (387)
T COG4099 242 --EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------------- 306 (387)
T ss_pred --ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-------------
Confidence 1122234455556665 677788899999999999999999999999999999999987773221
Q ss_pred hhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCC
Q 004866 624 ADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTI 686 (726)
Q Consensus 624 ~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~ 686 (726)
+ ..++...+.|.-++|+..|..+|.+.|.-.+++|++.+.
T Consensus 307 --------v---------------~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~ 346 (387)
T COG4099 307 --------V---------------YLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDR 346 (387)
T ss_pred --------h---------------hhhhhhccCceEEEEecCCCccccCcceeehHHHHhhcc
Confidence 0 011222467889999999999999999999999998763
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-11 Score=122.76 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC-Cc
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE-HK 574 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~r 574 (726)
+||++||..... ..|...+..|.++||.|+.+|+||+|.+... .....+++++.+.+..+++. .+. ++
T Consensus 5 ~vvllHG~~~~~--~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHGA--WCWYKLATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCCc--CcHHHHHHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 489999976543 4577788888899999999999999976321 11124567777666666654 222 58
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+.++||||||.++..++.++|++++++|+.++.
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 999999999999999999999999999987764
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-12 Score=127.01 Aligned_cols=191 Identities=19% Similarity=0.166 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
..|+||++||..... ..|...+..| .+||.|+.+|+||+|.+... ....++.++.+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTDL--RMWDPVLPAL-TPDFRVLRYDKRGHGLSDAP--------EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccch--hhHHHHHHHh-hcccEEEEecCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHH--hCC
Confidence 458999999853322 3455555555 57999999999999875321 1224677777777777654 244
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc--c-------cCCCCC-CCh----hhh-cccCCCCCh--
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT--L-------LYPILP-LIA----ADY-EEFGYPGDI-- 635 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~--~-------~~~~~~-~~~----~~~-~~~g~~~~~-- 635 (726)
+++.++|+|+||++++.++.++|++++++|+.++...+... . ...... ... .++ ..+..+...
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 78999999999999999999999999998877654322110 0 000000 000 000 001111100
Q ss_pred hHH----------------HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCC
Q 004866 636 DDF----------------HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699 (726)
Q Consensus 636 ~~~----------------~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 699 (726)
+.+ ..+...+....+.+ ++.|+++++|..|..+|.+...++.+.+... + +..++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~------~-~~~~~~~ 230 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGA-IAVPTLCIAGDQDGSTPPELVREIADLVPGA------R-FAEIRGA 230 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhh-cCCCeEEEEeccCCcCChHHHHHHHHhCCCc------e-EEEECCC
Confidence 000 01111112233443 7899999999999999998888777766431 2 2226899
Q ss_pred CCCCC
Q 004866 700 DIVEE 704 (726)
Q Consensus 700 gH~~~ 704 (726)
||...
T Consensus 231 gH~~~ 235 (251)
T TIGR02427 231 GHIPC 235 (251)
T ss_pred CCccc
Confidence 99643
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-11 Score=127.80 Aligned_cols=206 Identities=14% Similarity=0.043 Sum_probs=142.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||+.++|..-..+. ...++++|+++|+...+.. ......+.|||||+.|+|+.... ...+||.+|+.+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd--g~~~iy~~dl~~ 271 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD--GSPDIYLMDLDG 271 (425)
T ss_pred eeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--CCccEEEEcCCC
Confidence 4456899999999998654332 3789999999997655443 55667899999999999986543 456899999988
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~~ 281 (726)
....++.-. . .....+.|||||++|+|.+.+.+..+||++++++ ...+.++...... ...+++||+.+.|.+-.
T Consensus 272 ~~~~~Lt~~--~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 272 KNLPRLTNG--F-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CcceecccC--C-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 764443321 1 1223688999999999999999999999999998 4456666554433 45688999999998833
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
.+ ...++..++. .. ..|+.+. .........+...+..+++.....+.+.+...+++
T Consensus 347 ~g------~~~i~~~~~~-~~--~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 347 GG------QWDIDKNDLA-SG--GKIRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred CC------ceeeEEeccC-CC--CcEEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence 22 2557777664 21 2255442 22212223444455666666666667777777654
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-11 Score=117.87 Aligned_cols=207 Identities=15% Similarity=0.057 Sum_probs=130.5
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC--CCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL--LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~--~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
+.+++..|. +.+++..|.+ .++.|+||++||..+.. ....|......|+++||.|+.+|+||+|.+......
T Consensus 3 ~~l~~~~g~-~~~~~~~p~~---~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~-- 76 (266)
T TIGR03101 3 FFLDAPHGF-RFCLYHPPVA---VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAA-- 76 (266)
T ss_pred EEecCCCCc-EEEEEecCCC---CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccc--
Confidence 567777775 4455554543 23468999999853322 123355567889999999999999999876432211
Q ss_pred cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc-----------
Q 004866 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL----------- 614 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~----------- 614 (726)
. ......+|+.+++++|.+++ ..+|+++|+||||.+++.++.++|+.++++|+.+|++.-...+
T Consensus 77 -~-~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~ 151 (266)
T TIGR03101 77 -A-RWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVAR 151 (266)
T ss_pred -C-CHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHH
Confidence 0 11124588888999998764 4789999999999999999999999999999999987643221
Q ss_pred -cCCCCCC-----C----hhhhcc-cCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCC-CCcChHHHHHHHHHHH
Q 004866 615 -LYPILPL-----I----AADYEE-FGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN-TRFGVWEAAKWVARVR 682 (726)
Q Consensus 615 -~~~~~~~-----~----~~~~~~-~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D-~~V~~~~~~~~~~~L~ 682 (726)
.....+. . ....-+ .|..-.++....+.+.....-+.. ..+++++.-..+ ..-....+.++.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 229 (266)
T TIGR03101 152 RLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK--NCPVHWFEVRPEEGATLSPVFSRLGEQWV 229 (266)
T ss_pred hccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC--CCceEEEEeccccCCCCCHHHHHHHHHHH
Confidence 0000000 0 000001 133333344444544433322221 345677766544 4445567889999999
Q ss_pred hcCCC
Q 004866 683 ESTIY 687 (726)
Q Consensus 683 ~~~~~ 687 (726)
+.|++
T Consensus 230 ~~g~~ 234 (266)
T TIGR03101 230 QSGVE 234 (266)
T ss_pred HcCCe
Confidence 99964
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-11 Score=117.74 Aligned_cols=184 Identities=19% Similarity=0.282 Sum_probs=122.9
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCccccccccc----
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRT---- 548 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~---- 548 (726)
+|...+++++.|++.+ .+.|+||++||+.+..-......-+..|++ .||.|++|| ++.+.|...+...
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~p 115 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFGP 115 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCCc
Confidence 5677899999999864 334999999998665422222334567777 599999993 4555664444433
Q ss_pred ----CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc-cccccccCCCCCCCh
Q 004866 549 ----KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL-DATNTLLYPILPLIA 623 (726)
Q Consensus 549 ----~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~-d~~~~~~~~~~~~~~ 623 (726)
.+..++..+.+.+..|+.+.-+||.||.|.|-|.||.|+.+++..+|++|.|+..+++.. +-... ...-|.
T Consensus 116 ~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~--~~~rp~-- 191 (312)
T COG3509 116 ADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVAC--TPPRPV-- 191 (312)
T ss_pred ccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCccc--CCCCch--
Confidence 345678888899999999988999999999999999999999999999999988777765 21110 111111
Q ss_pred hhhccc-CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhc
Q 004866 624 ADYEEF-GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRES 684 (726)
Q Consensus 624 ~~~~~~-g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~ 684 (726)
....+ |.+. + ..|++- -..| |-++..|..|+..++.+..+++-..
T Consensus 192 -~~m~~~G~~D-p--------~~p~~g----G~~~--~g~g~~~~~v~~~~~~~~Waa~ng~ 237 (312)
T COG3509 192 -SVMAFHGTAD-P--------LNPYHG----GGVP--IGRGQRDGVVSAADLAARWAAVNGC 237 (312)
T ss_pred -hHHHhcCCCC-C--------CCCCCC----CCcc--cccccccccccHHHHHHHHHHhcCC
Confidence 11111 3222 1 244442 1223 7777888777666666666666443
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-11 Score=123.98 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=76.5
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.||++||++++.. ..|......+.+.||.|+.+|.||+|.+..... .....+++++.+.+..++++- +..
T Consensus 25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~ 96 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQPDD-----SDELWTIDYFVDELEEVREKL--GLD 96 (288)
T ss_pred CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCc-----ccccccHHHHHHHHHHHHHHc--CCC
Confidence 477899999877542 223333344444599999999999986532100 001245777777777776542 346
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.++|+|+||.+++.++.++|++++++|+.+++.
T Consensus 97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred cEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 79999999999999999999999999999887754
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=127.73 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=85.0
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
++...||.+|.+... + .+ +.+.||++||+++... .......+...+|.|+.+|+||+|.+... ..
T Consensus 8 ~~~~~~~~~l~y~~~---g-~~--~~~~lvllHG~~~~~~---~~~~~~~~~~~~~~vi~~D~~G~G~S~~~------~~ 72 (306)
T TIGR01249 8 YLNVSDNHQLYYEQS---G-NP--DGKPVVFLHGGPGSGT---DPGCRRFFDPETYRIVLFDQRGCGKSTPH------AC 72 (306)
T ss_pred eEEcCCCcEEEEEEC---c-CC--CCCEEEEECCCCCCCC---CHHHHhccCccCCEEEEECCCCCCCCCCC------CC
Confidence 466678888765331 2 11 1356889999876542 12233345457999999999999865321 11
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.......|+.+.+..++++- +.+++.++|+||||++++.++.++|++++++|+..++.
T Consensus 73 ~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 73 LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 11245677777777777652 34689999999999999999999999999888876543
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=124.90 Aligned_cols=222 Identities=16% Similarity=0.140 Sum_probs=129.6
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.++.++.. ++ . ++ .|.||++||..+.. ..|...+..|. .+|.|+++|+||+|.+... ....
T Consensus 9 ~~~~~~~~~~~--~~-~-~~-~~plvllHG~~~~~--~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~--------~~~~ 72 (276)
T TIGR02240 9 LDGQSIRTAVR--PG-K-EG-LTPLLIFNGIGANL--ELVFPFIEALD-PDLEVIAFDVPGVGGSSTP--------RHPY 72 (276)
T ss_pred cCCcEEEEEEe--cC-C-CC-CCcEEEEeCCCcch--HHHHHHHHHhc-cCceEEEECCCCCCCCCCC--------CCcC
Confidence 47778776442 11 1 12 35789999864433 35666666654 4799999999999976321 1123
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc------c--ccCCCC----C
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN------T--LLYPIL----P 620 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~------~--~~~~~~----~ 620 (726)
.++++.+.+..+++. .+.+++.++|+|+||++++.++.++|++++++|+.++...... . ...... +
T Consensus 73 ~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (276)
T TIGR02240 73 RFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQP 150 (276)
T ss_pred cHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhcc
Confidence 566666666666654 2446899999999999999999999999999999887653210 0 000000 0
Q ss_pred CC-----hhhhcc-cC-CCCCh--------------hHHHHHH--hcCcccccccCCCCCeEEEEecCCCCcChHHHHHH
Q 004866 621 LI-----AADYEE-FG-YPGDI--------------DDFHAIR--NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKW 677 (726)
Q Consensus 621 ~~-----~~~~~~-~g-~~~~~--------------~~~~~~~--~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~ 677 (726)
.. ...+.. +. ++... .....+. .......+.+ ++.|+|+|+|..|..+|+.++.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~v~~~~~~~l 229 (276)
T TIGR02240 151 SHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHK-IQQPTLVLAGDDDPIIPLINMRLL 229 (276)
T ss_pred ccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhc-CCCCEEEEEeCCCCcCCHHHHHHH
Confidence 00 000000 00 00000 0000000 0111222444 889999999999999999999888
Q ss_pred HHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 678 VARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 678 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.+.+... +.++ .+ +||...- +...+......+|+.+
T Consensus 230 ~~~~~~~------~~~~-i~-~gH~~~~-e~p~~~~~~i~~fl~~ 265 (276)
T TIGR02240 230 AWRIPNA------ELHI-ID-DGHLFLI-TRAEAVAPIIMKFLAE 265 (276)
T ss_pred HHhCCCC------EEEE-Ec-CCCchhh-ccHHHHHHHHHHHHHH
Confidence 8777542 2333 34 5996432 2222333345677765
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-11 Score=123.03 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=87.5
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
.+..+...++. +|.++++. .. ++.|.||++||.+... ..|......| .++|.|+.+|+||+|.++..
T Consensus 11 ~~~~~~~~~~~-~~~~i~y~---~~-----G~~~~iv~lHG~~~~~--~~~~~~~~~l-~~~~~vi~~D~~G~G~S~~~- 77 (286)
T PRK03204 11 LYPFESRWFDS-SRGRIHYI---DE-----GTGPPILLCHGNPTWS--FLYRDIIVAL-RDRFRCVAPDYLGFGLSERP- 77 (286)
T ss_pred cccccceEEEc-CCcEEEEE---EC-----CCCCEEEEECCCCccH--HHHHHHHHHH-hCCcEEEEECCCCCCCCCCC-
Confidence 34344445555 56666532 12 2247899999976422 3455555555 45799999999999976421
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
......++++.+.+..++++- +.+++.++|+|+||.++..++..+|++++++|+.++.
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 78 ------SGFGYQIDEHARVIGEFVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred ------CccccCHHHHHHHHHHHHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 011246788888888888652 4478999999999999999999999999999987654
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-11 Score=127.78 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH-HHHHH---HCCcEEEEEccCCCCCCCCcccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE-LKSLL---DRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~---~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
+..|.++++..--|++. ...|.||++||..+.. ..|... +..|. ++||.|+.+|+||+|.+...
T Consensus 182 ~~~~~~l~~~~~gp~~~---~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p------- 249 (481)
T PLN03087 182 SSSNESLFVHVQQPKDN---KAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP------- 249 (481)
T ss_pred eeCCeEEEEEEecCCCC---CCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC-------
Confidence 33456777655555431 2247899999986543 345432 23443 47999999999999876322
Q ss_pred cCCCCcHHHHHHHHH-HHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 548 TKKLNSIKDFISCAR-FLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
......++++.+.+. .+++. ...+++.++||||||++++.++.++|++++++|+.+|..
T Consensus 250 ~~~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 250 ADSLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred CCCcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 011245677666663 45543 234689999999999999999999999999999988643
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=132.47 Aligned_cols=145 Identities=21% Similarity=0.244 Sum_probs=96.6
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCC-CCCCccEEEEEcCCCCCCCCcc----chHHHHHHHHCCcEEEEEccCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYK-KENQNPGLLHGHGAYGELLDKR----WRSELKSLLDRGWVVAFADVRGG 534 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~-~~~~~P~vl~~hGg~~~~~~~~----~~~~~~~l~~~G~~v~~~d~RG~ 534 (726)
...|.+|+..+++.||..|...-+.+.... ...+.|.|+++||......... -......|+++||.|.++|.||.
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 457899999999999998887655332211 1133578999999654432111 11234468889999999999998
Q ss_pred CC-CCCcccccc-cc----cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEeC
Q 004866 535 GG-GGKKWHHDG-RR----TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEV 605 (726)
Q Consensus 535 g~-~g~~~~~~~-~~----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~ 605 (726)
+. +|....... .. .+......|+.++++++.+. ..+++.++|||+||.+++.++. +|+ +++++++.+
T Consensus 119 ~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~---~~~~v~~VGhS~Gg~~~~~~~~-~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 119 RWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSI---TNSKIFIVGHSQGTIMSLAALT-QPNVVEMVEAAALLC 194 (395)
T ss_pred ccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhc---cCCceEEEEECHHHHHHHHHhh-ChHHHHHHHHHHHhc
Confidence 63 333222111 11 11122346999999999864 2478999999999999986664 677 567777777
Q ss_pred Ccc
Q 004866 606 PFL 608 (726)
Q Consensus 606 p~~ 608 (726)
|+.
T Consensus 195 P~~ 197 (395)
T PLN02872 195 PIS 197 (395)
T ss_pred chh
Confidence 764
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=122.28 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=72.8
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
...|.||++||.++.. ..|......|. .+|.|+.+|.||+|.+.... ..+++++.+.+..+++. ..
T Consensus 14 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~~---------~~~~~~~~~d~~~~l~~--l~ 79 (255)
T PRK10673 14 HNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRDP---------VMNYPAMAQDLLDTLDA--LQ 79 (255)
T ss_pred CCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCCC---------CCCHHHHHHHHHHHHHH--cC
Confidence 3468899999987653 34666666664 57999999999999764321 12455555444444433 24
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
.+++.++|+|+||.+++.++.++|++++++|+..
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~ 113 (255)
T PRK10673 80 IEKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_pred CCceEEEEECHHHHHHHHHHHhCHhhcceEEEEe
Confidence 4679999999999999999999999999998864
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=120.05 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=78.2
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHH-HHHHHHcCCCCCC
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISC-ARFLIEKEIVKEH 573 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 573 (726)
|+||++||..+.. ..|......|+ +||.|+.+|.||+|.+... ......+++++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~~--~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGSG--ADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCch--hhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 7899999976543 45777777887 8999999999999876321 11123456666655 5555543 2457
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
++.++|||+||.+++.++.++|+.++++++.++...
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 899999999999999999999999999998887644
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=115.66 Aligned_cols=238 Identities=20% Similarity=0.183 Sum_probs=139.3
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
.+...||--+.....-++ .+.+.|+||..||--|+...+.-......+.++||.|+++|.||.++.-.. ....
T Consensus 53 ~v~~pdg~~~~ldw~~~p---~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~ 125 (345)
T COG0429 53 RLETPDGGFIDLDWSEDP---RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRL 125 (345)
T ss_pred EEEcCCCCEEEEeeccCc---cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccce
Confidence 445556655554444332 234569999999976665444223455777889999999999999864210 1111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccH-HHHHHHHHcCCC-ceeEEEEeCCccccccc----------c--
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGG-LLVAAAINCCPD-LFRAVVLEVPFLDATNT----------L-- 614 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG-~l~~~~~~~~p~-~f~a~v~~~p~~d~~~~----------~-- 614 (726)
......+|+..++++|.++.. +.++.++|.|+|| .|+.++..+.-+ ...|+++.+-.+|+... .
T Consensus 126 yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly 203 (345)
T COG0429 126 YHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLY 203 (345)
T ss_pred ecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhh
Confidence 223456999999999998643 5799999999999 555555543222 23444444433333210 0
Q ss_pred ------------------cCCCCCCCh-------hhhcccC----CCC--ChhHHHHHHhcCcccccccCCCCCeEEEEe
Q 004866 615 ------------------LYPILPLIA-------ADYEEFG----YPG--DIDDFHAIRNYSPYDNIQKDVLYPAVLVTS 663 (726)
Q Consensus 615 ------------------~~~~~~~~~-------~~~~~~g----~~~--~~~~~~~~~~~sp~~~i~~~~~~P~lli~g 663 (726)
+....|... .-..||- .|. -++..++|++-|++..+.+ |+.|+|+||+
T Consensus 204 ~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~-Ir~PtLii~A 282 (345)
T COG0429 204 SRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPK-IRKPTLIINA 282 (345)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccc-cccceEEEec
Confidence 001122110 0011221 111 1235688999999999997 9999999999
Q ss_pred cCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCC-CCc-hhhHH--HHHHHHHHHHHHhh
Q 004866 664 SFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIV-EEN-RYLQC--KESALETAFLIKMM 724 (726)
Q Consensus 664 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~-~~~-~~~~~--~~~~~~~~fl~~~l 724 (726)
..|+.+++..--+.-.. .. .-+++ -..+||. +.+ +..+. =...++.+||...+
T Consensus 283 ~DDP~~~~~~iP~~~~~---~n-----p~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 283 KDDPFMPPEVIPKLQEM---LN-----PNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCCCCChhhCCcchhc---CC-----CceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 99999987543332221 11 12233 5678994 222 22222 12345688887664
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=126.66 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=117.9
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEE
Q 004866 497 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLA 576 (726)
Q Consensus 497 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 576 (726)
||++||..+.. ..|......| ++||.|+.+|+||.|.+...- .....++++..+.+..++++- ..+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhccccc--cccccc
Confidence 68999976654 5678888877 589999999999998764321 122346677777666666542 227899
Q ss_pred EEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc--------cCCCCCCCh---hhh--cccCCCCChhH------
Q 004866 577 GWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--------LYPILPLIA---ADY--EEFGYPGDIDD------ 637 (726)
Q Consensus 577 i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~--------~~~~~~~~~---~~~--~~~g~~~~~~~------ 637 (726)
++|+|+||.+++.++.++|++++++|+.+|........ ...-..... ... ..+......+.
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999988543210 000000000 000 00000000000
Q ss_pred ------HHHH----HhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCC
Q 004866 638 ------FHAI----RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 703 (726)
Q Consensus 638 ------~~~~----~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 703 (726)
.+.+ ...++...+.. ++.|+++++|..|..++.....++.+.+... .+..++++||..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~gH~~ 217 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPR-IKVPVLVIHGEDDPIVPPESAEELADKLPNA-------ELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHG-SSSEEEEEEETTSSSSHHHHHHHHHHHSTTE-------EEEEETTSSSTH
T ss_pred ccccccccccccccccccccccccc-cCCCeEEeecCCCCCCCHHHHHHHHHHCCCC-------EEEEECCCCCcc
Confidence 0111 11222244454 7899999999999999877777776665431 222378999963
|
... |
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-11 Score=126.11 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=77.1
Q ss_pred CccEEEEEcCCCCCC---CCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCc--HHHHHHHHHHHHHc
Q 004866 493 QNPGLLHGHGAYGEL---LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNS--IKDFISCARFLIEK 567 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~---~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~--~~D~~~~~~~l~~~ 567 (726)
+.| ||.+||-.... ....+...+..|+++||.|+++|+||+|..... ..... .+|+.++++++.++
T Consensus 62 ~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~--------~~~~d~~~~~~~~~v~~l~~~ 132 (350)
T TIGR01836 62 KTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY--------LTLDDYINGYIDKCVDYICRT 132 (350)
T ss_pred CCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc--------CCHHHHHHHHHHHHHHHHHHH
Confidence 345 77778732111 111234678889999999999999997743211 11112 23467788888865
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccc
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 611 (726)
. ..+++.++|||+||.+++.++..+|+.++++|+.+|.++..
T Consensus 133 ~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 133 S--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred h--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 3 34789999999999999999888999999999999988753
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-10 Score=112.40 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=78.3
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc-CCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIV 570 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 570 (726)
+..|+|+.+||-|... -+|...+..|+++||.|+++|.||.|.+. .....-..++.-+...+..|++. +
T Consensus 42 ~~gP~illlHGfPe~w--yswr~q~~~la~~~~rviA~DlrGyG~Sd------~P~~~~~Yt~~~l~~di~~lld~Lg-- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESW--YSWRHQIPGLASRGYRVIAPDLRGYGFSD------APPHISEYTIDELVGDIVALLDHLG-- 111 (322)
T ss_pred CCCCEEEEEccCCccc--hhhhhhhhhhhhcceEEEecCCCCCCCCC------CCCCcceeeHHHHHHHHHHHHHHhc--
Confidence 3469999999998854 45677888999999999999999988652 22222223444444444444432 3
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
-+|+.+.||++|++++..++..+|++.++.|+...
T Consensus 112 -~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv 146 (322)
T KOG4178|consen 112 -LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNV 146 (322)
T ss_pred -cceeEEEeccchhHHHHHHHHhChhhcceEEEecC
Confidence 38999999999999999999999999999887653
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=118.51 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=80.6
Q ss_pred CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
++..|.||++||..+.. ..|......|.++||.|+.+|+||+|..... .....+++++.+.+..++++-.
T Consensus 15 ~~~~p~vvliHG~~~~~--~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~-------~~~~~~~~~~~~~l~~~i~~l~- 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGGS--WCWYKIRCLMENSGYKVTCIDLKSAGIDQSD-------ADSVTTFDEYNKPLIDFLSSLP- 84 (273)
T ss_pred cCCCCeEEEECCCCCCc--CcHHHHHHHHHhCCCEEEEecccCCCCCCCC-------cccCCCHHHHHHHHHHHHHhcC-
Confidence 34568999999975543 4677888888889999999999999853111 1122567777666665554421
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
..+++.++||||||.++..++.++|++++++|..++.
T Consensus 85 ~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2378999999999999999999899999999988764
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=122.87 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=80.2
Q ss_pred EEEECCCCc--EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 468 YDVPSHDGI--SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 468 ~~~~s~dG~--~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
-++.+.||. .|.. +..+.. +..|+||++||..+.. ..|...+..|.+ +|.|+.+|+||+|.+.+.-..
T Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~----~~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~-- 151 (402)
T PLN02894 82 RWFRSASNEPRFINT-VTFDSK----EDAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFT-- 151 (402)
T ss_pred cceecccCcCCeEEE-EEecCC----CCCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcc--
Confidence 345556665 5554 333322 3458999999975532 345555666655 699999999999976432110
Q ss_pred cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
........+.+++.+..+++. .+..++.++||||||++++.++.++|++++++|+.+|.
T Consensus 152 -~~~~~~~~~~~~~~i~~~~~~--l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 152 -CKSTEETEAWFIDSFEEWRKA--KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred -cccHHHHHHHHHHHHHHHHHH--cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 000001111233333333322 24468999999999999999999999999999988764
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-11 Score=118.18 Aligned_cols=96 Identities=21% Similarity=0.156 Sum_probs=69.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||..+.. ..|......|. .+|.|+.+|+||+|.+... ...+++++.+.+..+. .++
T Consensus 5 ~~iv~~HG~~~~~--~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~~~~~~~------~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMNA--EVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAEAIAAQA------PDP 66 (245)
T ss_pred ceEEEEcCCCCch--hhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHHHHHHhC------CCC
Confidence 7889999864432 34666666664 5799999999999975321 1234555554443222 268
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
+.++|+|+||++++.++.++|++++++|+.++..
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~ 100 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSP 100 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCc
Confidence 9999999999999999999999999999876643
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-10 Score=121.88 Aligned_cols=101 Identities=24% Similarity=0.282 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||.++.. ..|...+..|.+ +|.|+.+|+||+|.+... . ....+++++.+.+..++++ ...++
T Consensus 89 p~lvllHG~~~~~--~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~------~-~~~~~~~~~a~~l~~~l~~--l~~~~ 156 (360)
T PLN02679 89 PPVLLVHGFGASI--PHWRRNIGVLAK-NYTVYAIDLLGFGASDKP------P-GFSYTMETWAELILDFLEE--VVQKP 156 (360)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHhc-CCEEEEECCCCCCCCCCC------C-CccccHHHHHHHHHHHHHH--hcCCC
Confidence 7899999976543 457777776654 899999999999976321 0 0123556666555555543 23368
Q ss_pred EEEEEecccHHHHHHHHH-cCCCceeEEEEeCCc
Q 004866 575 LAGWGYSAGGLLVAAAIN-CCPDLFRAVVLEVPF 607 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~p~ 607 (726)
+.++|+|+||++++.++. .+|++++++|+.++.
T Consensus 157 ~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~ 190 (360)
T PLN02679 157 TVLIGNSVGSLACVIAASESTRDLVRGLVLLNCA 190 (360)
T ss_pred eEEEEECHHHHHHHHHHHhcChhhcCEEEEECCc
Confidence 999999999999988776 469999999988764
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=116.95 Aligned_cols=165 Identities=19% Similarity=0.152 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc---ccCC--CCCCChh---h
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT---LLYP--ILPLIAA---D 625 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~---~~~~--~~~~~~~---~ 625 (726)
++=|..+++||.+++.+++++|+|+|.|.||.+++.++..+| .++|+|+.+|..-.... .... .+|.... .
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 355788999999999999999999999999999999999988 68999998885432211 1111 1111100 0
Q ss_pred h--cccCCCCChhHHHHH------HhcCcccccccCCCCCeEEEEecCCCCcChHH-HHHHHHHHHhcCCCCCCCcEEE-
Q 004866 626 Y--EEFGYPGDIDDFHAI------RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWE-AAKWVARVRESTIYDPKRPILL- 695 (726)
Q Consensus 626 ~--~~~g~~~~~~~~~~~------~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~-~~~~~~~L~~~~~~~~~~~~~~- 695 (726)
. ...+.......+... .+.=| +.+ ++.|.|||.|+.|...|-.+ +..+.++|++++.+. ...++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~Ip---vE~-i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~--~~~~l~ 155 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIP---VEK-IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPH--NVEHLS 155 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB-----GGG---SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-------EEEE
T ss_pred ceecCCcceehhhhhhccccccccccccc---HHH-cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCC--cceEEE
Confidence 0 000110000000000 01112 333 67899999999998887665 446778899887431 22334
Q ss_pred EcCCCCCCCc------hh---------------------hHHHHHHHHHHHHHHhhc
Q 004866 696 NLTTDIVEEN------RY---------------------LQCKESALETAFLIKMME 725 (726)
Q Consensus 696 ~~~~gH~~~~------~~---------------------~~~~~~~~~~~fl~~~l~ 725 (726)
|+++||.... +. .+.+.+..+++||.++|+
T Consensus 156 Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 156 YPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cCCCCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999997431 10 234557788999999997
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-10 Score=114.32 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=130.7
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCC---CCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYK---KENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~---~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
-++.-++.+||-.+-...+.+.+.. .....|+||.+||-.+++....-......+.++||.|++.|.||.++.--
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~L-- 170 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKL-- 170 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCcc--
Confidence 3455566779988888777665532 13567999999997777654333455566677899999999999765311
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEeCCccccc--c-cc-
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLDAT--N-TL- 614 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~~d~~--~-~~- 614 (726)
......-...-+|+.++++++.++ +-+ .++.++|.||||.|....+.+..+ +.+|++..+|+ |.. . .+
T Consensus 171 --tTpr~f~ag~t~Dl~~~v~~i~~~-~P~-a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw-d~~~~~~~~~ 245 (409)
T KOG1838|consen 171 --TTPRLFTAGWTEDLREVVNHIKKR-YPQ-APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW-DLLAASRSIE 245 (409)
T ss_pred --CCCceeecCCHHHHHHHHHHHHHh-CCC-CceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc-hhhhhhhHHh
Confidence 111222234679999999999875 222 489999999999999998876533 55555555554 321 0 00
Q ss_pred -----------cC--------CCCC---------------CChhhhcc------cCCCCChhHHHHHHhcCcccccccCC
Q 004866 615 -----------LY--------PILP---------------LIAADYEE------FGYPGDIDDFHAIRNYSPYDNIQKDV 654 (726)
Q Consensus 615 -----------~~--------~~~~---------------~~~~~~~~------~g~~~~~~~~~~~~~~sp~~~i~~~~ 654 (726)
+. .... -+..++++ +|-+. .-++|++.|+...+++ +
T Consensus 246 ~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~~-I 321 (409)
T KOG1838|consen 246 TPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVDK-I 321 (409)
T ss_pred cccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhccc-c
Confidence 00 0000 00111111 23333 3467888999999998 9
Q ss_pred CCCeEEEEecCCCCcChH
Q 004866 655 LYPAVLVTSSFNTRFGVW 672 (726)
Q Consensus 655 ~~P~lli~g~~D~~V~~~ 672 (726)
+.|.|+|++..|+.||..
T Consensus 322 ~VP~L~ina~DDPv~p~~ 339 (409)
T KOG1838|consen 322 KVPLLCINAADDPVVPEE 339 (409)
T ss_pred cccEEEEecCCCCCCCcc
Confidence 999999999999999874
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=123.06 Aligned_cols=139 Identities=16% Similarity=0.128 Sum_probs=84.1
Q ss_pred CCCceEEEEEEEC---CCCcEEEEEEEEcCCCCCC-----CCccEEEEEcCCCCCCCCccch--HHHHH-------HHHC
Q 004866 460 SEFYSCEQYDVPS---HDGISVPLTIIYSPKYKKE-----NQNPGLLHGHGAYGELLDKRWR--SELKS-------LLDR 522 (726)
Q Consensus 460 ~~~~~~~~~~~~s---~dG~~i~~~l~~p~~~~~~-----~~~P~vl~~hGg~~~~~~~~~~--~~~~~-------l~~~ 522 (726)
...+..+.+.+.+ .+|.+|.+... + ... +..|.||++||+.+... .|. ..... +..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~g~~i~y~~~---G-~~~~~~~~~~gpplvllHG~~~~~~--~~~~~~~~~~l~~~~~~l~~~ 104 (360)
T PRK06489 31 EGDWVARDFTFHSGETLPELRLHYTTL---G-TPHRNADGEIDNAVLVLHGTGGSGK--SFLSPTFAGELFGPGQPLDAS 104 (360)
T ss_pred cCceeccceeccCCCCcCCceEEEEec---C-CCCcccccCCCCeEEEeCCCCCchh--hhccchhHHHhcCCCCccccc
Confidence 3455566666666 45555443221 1 100 01478999999866432 222 12222 2357
Q ss_pred CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHH-HHHcCCCCCCcEE-EEEecccHHHHHHHHHcCCCceeE
Q 004866 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARF-LIEKEIVKEHKLA-GWGYSAGGLLVAAAINCCPDLFRA 600 (726)
Q Consensus 523 G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~-l~~~~~~d~~ri~-i~G~S~GG~l~~~~~~~~p~~f~a 600 (726)
+|.|+.+|+||+|.+... ...........+++|+.+.+.. +.++- +-+++. |+|+||||++++.++.++|+++++
T Consensus 105 ~~~Via~Dl~GhG~S~~p-~~~~~~~~~~~~~~~~a~~~~~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~ 181 (360)
T PRK06489 105 KYFIILPDGIGHGKSSKP-SDGLRAAFPRYDYDDMVEAQYRLVTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDA 181 (360)
T ss_pred CCEEEEeCCCCCCCCCCC-CcCCCCCCCcccHHHHHHHHHHHHHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhhe
Confidence 899999999999975321 0000000112467777755433 43432 225664 899999999999999999999999
Q ss_pred EEEeCCc
Q 004866 601 VVLEVPF 607 (726)
Q Consensus 601 ~v~~~p~ 607 (726)
+|+.++.
T Consensus 182 LVLi~s~ 188 (360)
T PRK06489 182 LMPMASQ 188 (360)
T ss_pred eeeeccC
Confidence 9987664
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=120.99 Aligned_cols=130 Identities=19% Similarity=0.258 Sum_probs=84.5
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc---------cchHHH---HHHHHCCcEEEEEccCC--CCCCCC
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK---------RWRSEL---KSLLDRGWVVAFADVRG--GGGGGK 539 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~---------~~~~~~---~~l~~~G~~v~~~d~RG--~g~~g~ 539 (726)
+|.+|.+..+-+++ ....|.||++||-.++.... .|...+ ..|..++|.|+++|+|| +|..+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 45565544332211 12247899999865532111 244443 25667899999999999 454443
Q ss_pred -cccccccc---cCCCCcHHHHHHHHHHHHHcCCCCCCc-EEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 540 -KWHHDGRR---TKKLNSIKDFISCARFLIEKEIVKEHK-LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 540 -~~~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+...+.. .....+++|+.+.+..++++- .-++ +.++|+||||.+++.++.++|++++++|+.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 22211211 112357888888887777653 3357 9999999999999999999999999999887654
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=115.50 Aligned_cols=95 Identities=21% Similarity=0.252 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||..+.. ..|......|.+ .|.|+.+|+||+|.+.. . ...+++++... +.+. ..++
T Consensus 14 ~~ivllHG~~~~~--~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~------~---~~~~~~~~~~~---l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWRCIDEELSS-HFTLHLVDLPGFGRSRG------F---GALSLADMAEA---VLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCCh--hHHHHHHHHHhc-CCEEEEecCCCCCCCCC------C---CCCCHHHHHHH---HHhc---CCCC
Confidence 5699999965433 457777777754 59999999999997531 1 12355555443 4432 2478
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+.++|||+||+++..++.++|++++++|+..+.
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~ 108 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASS 108 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCc
Confidence 999999999999999999999999999987653
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=107.03 Aligned_cols=210 Identities=15% Similarity=0.159 Sum_probs=124.2
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch--HHHHHHH-HCCcEEEEEc--cCCCCC----------CCC
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR--SELKSLL-DRGWVVAFAD--VRGGGG----------GGK 539 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~--~~~~~l~-~~G~~v~~~d--~RG~g~----------~g~ 539 (726)
+..+...|+.|+....+++.|++.|+-|-... ...|. ...|..+ .+|.+|+.|| .||-.- .|.
T Consensus 25 ~c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ccceEEEEecCCCcccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 34566678999988777889999999985332 23332 2334444 5799999999 455321 222
Q ss_pred ccccc-ccccCCC--CcHHHHHHHHHHHHHc--CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 540 KWHHD-GRRTKKL--NSIKDFISCARFLIEK--EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 540 ~~~~~-~~~~~~~--~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
.|+-. ....|.. ..++=+..-+-.++.. -.+|+.+++|+||||||+-++.+..+.|.+|+.+.+.+|+++..+
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~-- 180 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPIN-- 180 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCccc--
Confidence 23221 1112221 1222222222223322 246999999999999999999999999999999999999998763
Q ss_pred cCCCCCCChhhhccc-CCCCChhHHHHHHhcCcccccccC--CCCCeEEEEecCCCCcChHH--HHHHHHHHHhcCCCCC
Q 004866 615 LYPILPLIAADYEEF-GYPGDIDDFHAIRNYSPYDNIQKD--VLYPAVLVTSSFNTRFGVWE--AAKWVARVRESTIYDP 689 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~i~~~--~~~P~lli~g~~D~~V~~~~--~~~~~~~L~~~~~~~~ 689 (726)
.|++...+..| |+ + ...+.+|++.+-+++. ... .+||+.|.++..-..| ++.+.++.+....
T Consensus 181 ----cpWGqKAf~gYLG~--~---ka~W~~yDat~lik~y~~~~~-~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~--- 247 (283)
T KOG3101|consen 181 ----CPWGQKAFTGYLGD--N---KAQWEAYDATHLIKNYRGVGD-DILIDQGAADNFLAEQLLPENLLEACKATWQ--- 247 (283)
T ss_pred ----CcchHHHhhcccCC--C---hHHHhhcchHHHHHhcCCCCc-cEEEecCccchhhhhhcChHHHHHHhhcccc---
Confidence 46655444443 43 2 2334555655444321 222 3566555543332232 5566666665432
Q ss_pred CCcEEE--EcCCCCC
Q 004866 690 KRPILL--NLTTDIV 702 (726)
Q Consensus 690 ~~~~~~--~~~~gH~ 702 (726)
.++++ .++-.|.
T Consensus 248 -~~v~~r~~~gyDHS 261 (283)
T KOG3101|consen 248 -APVVFRLQEGYDHS 261 (283)
T ss_pred -ccEEEEeecCCCcc
Confidence 46666 4555674
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=121.24 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=78.2
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
..|.||++||..+.. ..|......|. ++|.|+.+|+||+|.+... ....++.++.+.+..++++ .+.
T Consensus 130 ~~~~vl~~HG~~~~~--~~~~~~~~~l~-~~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~ 196 (371)
T PRK14875 130 DGTPVVLIHGFGGDL--NNWLFNHAALA-AGRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGI 196 (371)
T ss_pred CCCeEEEECCCCCcc--chHHHHHHHHh-cCCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCC
Confidence 357899999865533 34555556554 4699999999999976322 1234678888888777754 466
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
.++.++|+|+||++++.++.++|++++++|+.+|.
T Consensus 197 ~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 197 ERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred ccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 78999999999999999999899999999988875
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=116.82 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||..+.. ..|......|+ ++|.|+.+|+||+|.+..... ..+..++.+.+..++++- ..++
T Consensus 87 ~~vvliHG~~~~~--~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~--------~~~~~~~a~~l~~~i~~~--~~~~ 153 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWRYNIPELA-KKYKVYALDLLGFGWSDKALI--------EYDAMVWRDQVADFVKEV--VKEP 153 (354)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEECCCCCCCCCCccc--------ccCHHHHHHHHHHHHHHh--ccCC
Confidence 5578999865432 34555555654 579999999999997654321 123333333333233221 1368
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+.++|||+||++++.++.++|++++++|+.++.
T Consensus 154 ~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~ 186 (354)
T PLN02578 154 AVLVGNSLGGFTALSTAVGYPELVAGVALLNSA 186 (354)
T ss_pred eEEEEECHHHHHHHHHHHhChHhcceEEEECCC
Confidence 999999999999999999999999999987653
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=104.97 Aligned_cols=186 Identities=13% Similarity=0.072 Sum_probs=119.4
Q ss_pred CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc---cccccccC--CCCcHHHHHHHHHHHH
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW---HHDGRRTK--KLNSIKDFISCARFLI 565 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~---~~~~~~~~--~~~~~~D~~~~~~~l~ 565 (726)
+...|+||+.||.-+ ....|.+..+.+.- .+.++.++-+=.-..+..| +..+..+. .......+.+.++.+.
T Consensus 15 ~p~~~~iilLHG~Gg--de~~~~~~~~~~~P-~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~ 91 (207)
T COG0400 15 DPAAPLLILLHGLGG--DELDLVPLPELILP-NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELA 91 (207)
T ss_pred CCCCcEEEEEecCCC--ChhhhhhhhhhcCC-CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHH
Confidence 345689999998432 33345453333322 3555544433221222222 22222221 1122344455666666
Q ss_pred HcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcC
Q 004866 566 EKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYS 645 (726)
Q Consensus 566 ~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~s 645 (726)
++--+|++||.+.|.|.|+.+++.++.++|++|+++|+.+|+.-... .
T Consensus 92 ~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~--------------------~------------ 139 (207)
T COG0400 92 EEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP--------------------E------------ 139 (207)
T ss_pred HHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------c------------
Confidence 66778999999999999999999999999999999998888643210 0
Q ss_pred cccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 646 PYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 646 p~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
+..+ ...+|++++||..|++||..++.++.+.|+..|.+ +.+ .-..||.... ++......|+...+
T Consensus 140 ~~~~---~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~-----v~~~~~~~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 140 LLPD---LAGTPILLSHGTEDPVVPLALAEALAEYLTASGAD-----VEVRWHEGGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred cccc---cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCC-----EEEEEecCCCcCCH-----HHHHHHHHHHHhcc
Confidence 0001 24678999999999999999999999999998853 444 3349996433 44555667887654
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=125.14 Aligned_cols=143 Identities=19% Similarity=0.197 Sum_probs=112.2
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch----HH--HHHHHHCCcEEEEEccCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR----SE--LKSLLDRGWVVAFADVRGG 534 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~----~~--~~~l~~~G~~v~~~d~RG~ 534 (726)
..+....+.++.+||++|...|++|++. ++.|+++..+=.|-......+. .. ...++.+||+|+..|.||.
T Consensus 15 ~~~~~~~v~V~MRDGvrL~~dIy~Pa~~---g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~ 91 (563)
T COG2936 15 AGYIERDVMVPMRDGVRLAADIYRPAGA---GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGR 91 (563)
T ss_pred cceeeeeeeEEecCCeEEEEEEEccCCC---CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccc
Confidence 3466777999999999999999999864 7889988776222211110111 11 1368999999999999999
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc
Q 004866 535 GGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612 (726)
Q Consensus 535 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 612 (726)
+++...|..-.. .+.+|-.++|+||++|++.+ .+||.+|.||+|+...++|...|.-.||++...+..|+..
T Consensus 92 ~~SeG~~~~~~~-----~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~ 163 (563)
T COG2936 92 GGSEGVFDPESS-----REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYR 163 (563)
T ss_pred ccCCcccceecc-----ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccc
Confidence 988766543222 37899999999999999987 8999999999999999999888888899999999888653
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-11 Score=122.94 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=91.0
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc--hHHHHHHHHCC----cEEEEEccCCCCCCCCccccc----
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW--RSELKSLLDRG----WVVAFADVRGGGGGGKKWHHD---- 544 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~--~~~~~~l~~~G----~~v~~~d~RG~g~~g~~~~~~---- 544 (726)
|..+.++|+.|++..+.+++|+|++.||. . .....+ ......+++.| .+++.++.-+.......|+..
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~-~-~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQ-S-GWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHT-T-HHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCC-c-cccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccc
Confidence 66788899999997778899999999995 1 111111 12234455554 555666655544333444422
Q ss_pred --ccccCCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccc
Q 004866 545 --GRRTKKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 545 --~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 611 (726)
.....+...+.+++ +.+.++.++--+++++.+|+|+||||+.++.++.++|++|.++++.+|.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 11112223455554 35666666655666669999999999999999999999999999999987764
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-10 Score=118.00 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=67.7
Q ss_pred CccEEEEEcCCCCCCCCccchHHH---HHHHHCCcEEEEEccCCCCCCCCccccccc---ccCCCCcH-HHHHHHHHHHH
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSEL---KSLLDRGWVVAFADVRGGGGGGKKWHHDGR---RTKKLNSI-KDFISCARFLI 565 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~---~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~---~~~~~~~~-~D~~~~~~~l~ 565 (726)
+.|+||+.||..+... .|...+ ..|...+|.|+++|.||+|.+......... .......+ +|+.+....|.
T Consensus 40 ~~~~vll~~~~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQ--DNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCcc--cchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 3466777676543321 232221 255567999999999999976432110000 00001123 44444344454
Q ss_pred H-cCCCCCCcE-EEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 566 E-KEIVKEHKL-AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 566 ~-~~~~d~~ri-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+ .+. +++ .|+|+||||++++.++.++|++++++|+.++.
T Consensus 118 ~~lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~ 158 (339)
T PRK07581 118 EKFGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGT 158 (339)
T ss_pred HHhCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecC
Confidence 4 333 684 78999999999999999999999999987543
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-09 Score=114.85 Aligned_cols=113 Identities=20% Similarity=0.269 Sum_probs=76.0
Q ss_pred ccEEEEEcCCCCCCCCc-----------cchHHH---HHHHHCCcEEEEEccCCC-CC-CCCccccc--ccc---cCCCC
Q 004866 494 NPGLLHGHGAYGELLDK-----------RWRSEL---KSLLDRGWVVAFADVRGG-GG-GGKKWHHD--GRR---TKKLN 552 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~-----------~~~~~~---~~l~~~G~~v~~~d~RG~-g~-~g~~~~~~--~~~---~~~~~ 552 (726)
.|.||++||..+..... .|...+ ..|...+|.|+.+|++|+ ++ .+...... +.. .....
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 58999999976644210 133332 244467999999999984 32 22221110 000 11135
Q ss_pred cHHHHHHHHHHHHHcCCCCCCc-EEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 553 SIKDFISCARFLIEKEIVKEHK-LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
+++|+.+.+..++++- .-++ ..++|+||||.+++.++.++|++++++|+.++..
T Consensus 128 ~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 182 (379)
T PRK00175 128 TIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSA 182 (379)
T ss_pred CHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCc
Confidence 7889888888777653 3356 4899999999999999999999999999887643
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-09 Score=106.64 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||..+.. ..|...+..| ++|.|+.+|+||+|.+... ...+++++.+.+..++++. ..++
T Consensus 3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CCCC
Confidence 6799999986644 4677777766 4799999999999976421 1126667666666666542 3479
Q ss_pred EEEEEecccHHHHHHHHHcCCC-ceeEEEEeCCcc
Q 004866 575 LAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVPFL 608 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~~ 608 (726)
+.++||||||.+++.++.++|+ +++++++.++..
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCC
Confidence 9999999999999999998865 499988876553
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-09 Score=98.09 Aligned_cols=223 Identities=14% Similarity=0.066 Sum_probs=142.9
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 543 (726)
..+.+.++.+.+..+-+.+ +- .+..-++|..||.-......-....+.+|.+.|+-++.+|++|.|++...|+.
T Consensus 9 ~~~~ivi~n~~ne~lvg~l-h~-----tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~ 82 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLL-HE-----TGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYY 82 (269)
T ss_pred eeeEEEeccCCCchhhcce-ec-----cCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCcccc
Confidence 5566778877777665522 21 24456899999853332211122345678889999999999999998777664
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCCh
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIA 623 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~ 623 (726)
. .+....+|+..+++++.... .---+|.|||-||..++..+..+++ .+-+|..+|-.|........-.+...
T Consensus 83 G----n~~~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l 154 (269)
T KOG4667|consen 83 G----NYNTEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYL 154 (269)
T ss_pred C----cccchHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHH
Confidence 2 22346699999999997532 2233799999999999999998887 56677777877766543111111111
Q ss_pred hhhcc------------cCCCCChhHH-HHHHh-cCcc-cccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCC
Q 004866 624 ADYEE------------FGYPGDIDDF-HAIRN-YSPY-DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYD 688 (726)
Q Consensus 624 ~~~~~------------~g~~~~~~~~-~~~~~-~sp~-~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~ 688 (726)
.+..+ ++.-++++-. +.+.. .++. ..|+ ..+|+|-+||..|..||.+.+.+|++.+..+.
T Consensus 155 ~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId--~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~--- 229 (269)
T KOG4667|consen 155 ERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKID--KQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHK--- 229 (269)
T ss_pred HHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcC--ccCceEEEeccCCceeechhHHHHHHhccCCc---
Confidence 11111 1222222211 11110 1111 1244 47999999999999999999999999887743
Q ss_pred CCCcEEEEcCCCCCCCchhhH
Q 004866 689 PKRPILLNLTTDIVEENRYLQ 709 (726)
Q Consensus 689 ~~~~~~~~~~~gH~~~~~~~~ 709 (726)
..+ .+++.|++......
T Consensus 230 ---L~i-IEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 230 ---LEI-IEGADHNYTGHQSQ 246 (269)
T ss_pred ---eEE-ecCCCcCccchhhh
Confidence 223 69999987664333
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.4e-09 Score=110.49 Aligned_cols=219 Identities=11% Similarity=-0.028 Sum_probs=125.7
Q ss_pred eEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCC----cEEEEEccCCCCCCC
Q 004866 464 SCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRG----WVVAFADVRGGGGGG 538 (726)
Q Consensus 464 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G----~~v~~~d~RG~g~~g 538 (726)
..+.+++.|. -|.+..++|+.|++.. .+++|+|++.||........ .......|.++| .+|+++|........
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~~R~ 256 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTTHRS 256 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCccccc
Confidence 3455666653 4667888999998865 56899999999975433222 223445677777 456788763222111
Q ss_pred CcccccccccCCCCcHHHHH--HHHHHHHHc-C-CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFI--SCARFLIEK-E-IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~-~-~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
.+. .....+.+++ +.+-++.++ . ..|+++.+|+|.||||+.++.++.++|++|.++++.+|.+-+...
T Consensus 257 ~el-------~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~- 328 (411)
T PRK10439 257 QEL-------PCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR- 328 (411)
T ss_pred ccC-------CchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc-
Confidence 110 0112333332 223344333 1 348899999999999999999999999999999999986422110
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
.+. ......+.+.+. ... .+...++|..|..+.+-.....++++.|+++|. .+.
T Consensus 329 --------------~~~-~~~~l~~~l~~~----~~~--~~~lr~~i~~G~~E~~~~~~~~~l~~~L~~~G~-----~~~ 382 (411)
T PRK10439 329 --------------GGQ-QEGVLLEQLKAG----EVS--ARGLRIVLEAGRREPMIMRANQALYAQLHPAGH-----SVF 382 (411)
T ss_pred --------------cCC-chhHHHHHHHhc----ccC--CCCceEEEeCCCCCchHHHHHHHHHHHHHHCCC-----cEE
Confidence 000 000112222221 011 111135555454333346778999999999984 345
Q ss_pred E-EcCCCCCCCchhhHHH-HHHHHHHHHHH
Q 004866 695 L-NLTTDIVEENRYLQCK-ESALETAFLIK 722 (726)
Q Consensus 695 ~-~~~~gH~~~~~~~~~~-~~~~~~~fl~~ 722 (726)
+ ...+||.... ++ ...+.+.||..
T Consensus 383 ~~~~~GGHd~~~----Wr~~L~~~L~~l~~ 408 (411)
T PRK10439 383 WRQVDGGHDALC----WRGGLIQGLIDLWQ 408 (411)
T ss_pred EEECCCCcCHHH----HHHHHHHHHHHHhc
Confidence 5 4456895322 22 23344566543
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=108.37 Aligned_cols=122 Identities=21% Similarity=0.139 Sum_probs=86.8
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
+.+|.++.+ ...+ ++..|.||++||.+... ..|...+..|. .+|.|+++|+||+|.+...... ....
T Consensus 111 ~~~~~~~~y---~~~G---~~~~~~ivllHG~~~~~--~~w~~~~~~L~-~~~~Via~DlpG~G~S~~p~~~----~~~~ 177 (383)
T PLN03084 111 SSDLFRWFC---VESG---SNNNPPVLLIHGFPSQA--YSYRKVLPVLS-KNYHAIAFDWLGFGFSDKPQPG----YGFN 177 (383)
T ss_pred cCCceEEEE---EecC---CCCCCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEECCCCCCCCCCCccc----cccc
Confidence 467877653 2222 12347899999976533 45776666665 5899999999999975332110 0113
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+++++...+..++++- ..+++.|+|+|+||.+++.++.++|++++++|+..|..
T Consensus 178 ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 178 YTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 46777777777776553 23689999999999999999999999999999998764
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-09 Score=112.80 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=61.5
Q ss_pred cchHHHH---HHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc-EEEEEecccHHH
Q 004866 511 RWRSELK---SLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK-LAGWGYSAGGLL 586 (726)
Q Consensus 511 ~~~~~~~---~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l 586 (726)
.|...+. .|...+|.|+.+|+||+|+... ....+.|+.+.+..+++.- +-++ +.++|+||||++
T Consensus 84 ~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~----------~~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~v 151 (343)
T PRK08775 84 WWEGLVGSGRALDPARFRLLAFDFIGADGSLD----------VPIDTADQADAIALLLDAL--GIARLHAFVGYSYGALV 151 (343)
T ss_pred cchhccCCCCccCccccEEEEEeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHH
Confidence 3555554 4545689999999999875411 1124566666665565542 2235 479999999999
Q ss_pred HHHHHHcCCCceeEEEEeCCcc
Q 004866 587 VAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 587 ~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.++.++|++++++|+.++..
T Consensus 152 A~~~A~~~P~~V~~LvLi~s~~ 173 (343)
T PRK08775 152 GLQFASRHPARVRTLVVVSGAH 173 (343)
T ss_pred HHHHHHHChHhhheEEEECccc
Confidence 9999999999999999988753
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.9e-10 Score=124.41 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=93.3
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHC-C-cEEEEEccC-CCCCCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR-G-WVVAFADVR-GGGGGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G-~~v~~~d~R-G~g~~g~~~~~~~~~~ 548 (726)
+.|-.. ..|+.|......++.|+||++|||.......... ....|+.+ + ++|+.+||| |.-++...... ..
T Consensus 75 sEdcl~--l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~ 148 (493)
T cd00312 75 SEDCLY--LNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---EL 148 (493)
T ss_pred CCcCCe--EEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCC---CC
Confidence 456544 4567787543456789999999985432222221 33455554 3 999999999 66566443221 12
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCcccc
Q 004866 549 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~ 610 (726)
.+...+.|.+++++|+.++- -.||+||.|+|+|+||+++++++.. .+.+|+++|+.+|....
T Consensus 149 ~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 149 PGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 23346899999999998751 2699999999999999999998885 24589999999887653
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=105.13 Aligned_cols=196 Identities=20% Similarity=0.220 Sum_probs=120.6
Q ss_pred HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH-cCCCCCCcEEEEEecccHHHHHHHHH
Q 004866 514 SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE-KEIVKEHKLAGWGYSAGGLLVAAAIN 592 (726)
Q Consensus 514 ~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~l~~~~~~ 592 (726)
..+..|+++||+|+++||-|-|. .|.. + .......-|.+.+++.+.. .+.....+++++|+|-||.-+++++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~---~y~~-~--~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGT---PYLN-G--RSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCC---cccC-c--HhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 34578899999999999998775 3321 1 1112345565666655554 24444579999999999999988874
Q ss_pred c----CCCc---eeEEEEeCCcccccccccCCCC-CCC-h---------hhhc---------------------------
Q 004866 593 C----CPDL---FRAVVLEVPFLDATNTLLYPIL-PLI-A---------ADYE--------------------------- 627 (726)
Q Consensus 593 ~----~p~~---f~a~v~~~p~~d~~~~~~~~~~-~~~-~---------~~~~--------------------------- 627 (726)
. .||+ +.++++..|..|+...+..-.. +.. . ..|.
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~ 170 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLA 170 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 4 4776 7899999998887654321000 000 0 0000
Q ss_pred ---------cc--C-----CCC-----ChhHHHHHHhcCc-ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcC
Q 004866 628 ---------EF--G-----YPG-----DIDDFHAIRNYSP-YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVREST 685 (726)
Q Consensus 628 ---------~~--g-----~~~-----~~~~~~~~~~~sp-~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~ 685 (726)
.+ + .+. ++.....+.+.+. +.. ....+.|+++.||..|..||+..+.++++++.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G 249 (290)
T PF03583_consen 171 DIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGG-DWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAG 249 (290)
T ss_pred HHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccC-CCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcC
Confidence 00 0 000 0111122222222 100 11136899999999999999999999999999998
Q ss_pred CCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 686 IYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 686 ~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
. ..+.+ ++..+|... ........++||...|
T Consensus 250 ~----a~V~~~~~~~~~H~~~----~~~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 250 G----ADVEYVRYPGGGHLGA----AFASAPDALAWLDDRF 282 (290)
T ss_pred C----CCEEEEecCCCChhhh----hhcCcHHHHHHHHHHH
Confidence 2 13444 788999532 2334456779998876
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-08 Score=103.20 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=135.3
Q ss_pred eceeeCCCCCEEEEEEeCC-----------------------------CC--cEEEEEEEECCCCceecccc-------c
Q 004866 125 ELSEVSPDHKFLAYTMYDK-----------------------------DN--DYFTLSVRNLNSGALCSKPQ-------A 166 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~-----------------------------g~--e~~~l~v~dl~tg~~~~~~~-------~ 166 (726)
.++.|||||++|||..-.. |+ ....|+|+|+++++...+.. .
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 3567999999999975311 11 13579999999997643221 1
Q ss_pred cccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceE---EEEEEc-CCCcEEEEEEcCCCceEE
Q 004866 167 VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVY---VNIRHT-KDFHFVCVHTFSTTSSKV 242 (726)
Q Consensus 167 ~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~---~~~~~s-~Dg~~l~~~~~~~~~~~l 242 (726)
.....+.|++|++.|++...++......+++.+..++.... +.++....+. ..+.+. +++..+++.+...+..+|
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~-~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV-VLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-EEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 24567899999998999888877777788888988875544 3444444332 133444 788877777777778999
Q ss_pred EEEeCCCCCCCeEEeeccCCce--EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEE
Q 004866 243 FLINAADPFSGLTLIWECEGLA--HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVE 320 (726)
Q Consensus 243 ~~~d~~~~~~~~~~l~~~~~~~--~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~ 320 (726)
|+++..+ +.++.|+...-.+ ...++++++.+||.++.... ....||+++++ ..+..+.|........-.
T Consensus 263 y~~~~~~--~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p----~~r~lY~v~~~---~~~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 263 YLYDLDG--GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNP----GERHLYRVSLD---SGGEPKCLTCEDGDHYSA 333 (353)
T ss_dssp EEEETTS--SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGT----TSBEEEEEETT---ETTEEEESSTTSSTTEEE
T ss_pred EEEcccc--cceeccccCceeecccceEcCCCCEEEEEecCCCC----CceEEEEEEeC---CCCCeEeccCCCCCceEE
Confidence 9999988 4567777666544 34677889999999997543 25889999885 134556565444333234
Q ss_pred EEeeeCCEEEEEEEeCCe
Q 004866 321 DVDFCKTHMALILREGRT 338 (726)
Q Consensus 321 ~~~~~~~~lv~~~~~~g~ 338 (726)
.++..+++++..++.-+.
T Consensus 334 ~~Spdg~y~v~~~s~~~~ 351 (353)
T PF00930_consen 334 SFSPDGKYYVDTYSGPDT 351 (353)
T ss_dssp EE-TTSSEEEEEEESSSS
T ss_pred EECCCCCEEEEEEcCCCC
Confidence 556666788777765443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=104.16 Aligned_cols=178 Identities=19% Similarity=0.255 Sum_probs=119.2
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHH
Q 004866 479 PLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI 558 (726)
Q Consensus 479 ~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~ 558 (726)
+..|++|.. .+.+|+||+.||-. .....|....+.+++.||+|+.+|...-... ....+.+++.
T Consensus 5 ~l~v~~P~~---~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~-----------~~~~~~~~~~ 68 (259)
T PF12740_consen 5 PLLVYYPSS---AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGGP-----------DDTDEVASAA 68 (259)
T ss_pred CeEEEecCC---CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCCC-----------CcchhHHHHH
Confidence 456788875 36799999999854 2334477888999999999999995542221 2235788889
Q ss_pred HHHHHHHHc---C-----CCCCCcEEEEEecccHHHHHHHHHcC-----CCceeEEEEeCCcccccccccCCCCCCChhh
Q 004866 559 SCARFLIEK---E-----IVKEHKLAGWGYSAGGLLVAAAINCC-----PDLFRAVVLEVPFLDATNTLLYPILPLIAAD 625 (726)
Q Consensus 559 ~~~~~l~~~---~-----~~d~~ri~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~ 625 (726)
+.++||.+. . ..|-+||+|+|||.||-++..++..+ +.+|+|+|+..|+-.+... ..
T Consensus 69 ~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~--~~-------- 138 (259)
T PF12740_consen 69 EVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG--SQ-------- 138 (259)
T ss_pred HHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc--cC--------
Confidence 999998872 1 14778999999999999999888876 5589999999997643211 00
Q ss_pred hcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCC--------CcChH--HHHHHHHHHHhcCCCCCCCcEEE
Q 004866 626 YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNT--------RFGVW--EAAKWVARVRESTIYDPKRPILL 695 (726)
Q Consensus 626 ~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~--------~V~~~--~~~~~~~~L~~~~~~~~~~~~~~ 695 (726)
..|. +..+.|.. . +...|+++|-+|... .|.|. +-.+|+++++... -.+.
T Consensus 139 ----~~P~-------v~~~~p~s-~--~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~p~------~~~v 198 (259)
T PF12740_consen 139 ----TEPP-------VLTYTPQS-F--DFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKPPS------WHFV 198 (259)
T ss_pred ----CCCc-------cccCcccc-c--CCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCCCE------EEEE
Confidence 0111 11112221 1 145788888777762 34444 4568888885421 1222
Q ss_pred EcCCCCC
Q 004866 696 NLTTDIV 702 (726)
Q Consensus 696 ~~~~gH~ 702 (726)
-.+.||.
T Consensus 199 ~~~~GH~ 205 (259)
T PF12740_consen 199 AKDYGHM 205 (259)
T ss_pred eCCCCch
Confidence 6789996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=98.04 Aligned_cols=222 Identities=17% Similarity=0.091 Sum_probs=140.2
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
+.+.+.+--..-+.|. |+.|. ...|++|++||||+...+..-. .....+.++||+|+.++|--+..
T Consensus 44 r~e~l~Yg~~g~q~VD--Iwg~~-----~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q------ 110 (270)
T KOG4627|consen 44 RVEHLRYGEGGRQLVD--IWGST-----NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ------ 110 (270)
T ss_pred chhccccCCCCceEEE--EecCC-----CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc------
Confidence 4445544322223444 55653 3458999999999865443322 34567788999999998764432
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc-CCCceeEEEEeCCcccccccccCCCCCC
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC-CPDLFRAVVLEVPFLDATNTLLYPILPL 621 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~~~~~~~ 621 (726)
...-...+.++...++|+.+. +-+.+.|.+.|||+|+++++.++++ +..++.++++.+|++++.... ....
T Consensus 111 ----~htL~qt~~~~~~gv~filk~-~~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~-~te~-- 182 (270)
T KOG4627|consen 111 ----VHTLEQTMTQFTHGVNFILKY-TENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELS-NTES-- 182 (270)
T ss_pred ----cccHHHHHHHHHHHHHHHHHh-cccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHh-CCcc--
Confidence 111224788999999999874 4466889999999999999887765 456788999999999875321 1000
Q ss_pred ChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCC
Q 004866 622 IAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDI 701 (726)
Q Consensus 622 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH 701 (726)
....|... +.....|+....-..++.|.|++.+..+.---++|...|++.++++. +.++++.+|
T Consensus 183 ----g~dlgLt~-----~~ae~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~-------~~~f~n~~h 246 (270)
T KOG4627|consen 183 ----GNDLGLTE-----RNAESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRKAS-------FTLFKNYDH 246 (270)
T ss_pred ----ccccCccc-----chhhhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcc-------eeecCCcch
Confidence 01122211 11223344322222378898999999996667999999999999864 223688899
Q ss_pred CCCchhhHHHHHHHHHHHHHHh
Q 004866 702 VEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 702 ~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
.-. ..+.+..-..++.||.+.
T Consensus 247 y~I-~~~~~~~~s~~~~~~~~~ 267 (270)
T KOG4627|consen 247 YDI-IEETAIDDSDVSRFLRNI 267 (270)
T ss_pred hhH-HHHhccccchHHHHHHHH
Confidence 421 122222223456666654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-07 Score=91.61 Aligned_cols=209 Identities=12% Similarity=0.078 Sum_probs=112.6
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc--cccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA--VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~--~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
....|++||++|.|.++..|. .+||++||++++.+++|.. ....+..+||+++.|||.... ..|++++|.|
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~--~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T 111 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGN--RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDT 111 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT
T ss_pred cCCCcCCCCCEEEEEeccCCC--cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-----CeEEEEECCc
Confidence 445799999999999988775 5799999999999999873 234578899999999998532 3799999998
Q ss_pred CCceeEEeeecCCce-EEEEEEcCCCcEEEEEEcCC-------------------CceEEEEEeCCCCCCCeEEeeccCC
Q 004866 203 TDEDALLLEESNENV-YVNIRHTKDFHFVCVHTFST-------------------TSSKVFLINAADPFSGLTLIWECEG 262 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~-~~~~~~s~Dg~~l~~~~~~~-------------------~~~~l~~~d~~~~~~~~~~l~~~~~ 262 (726)
.+ .++||+.++.-- +.......|++.++...... ..+.|+.+|+.+ ++.+.+.....
T Consensus 112 ~e-~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~~ 188 (386)
T PF14583_consen 112 LE-ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDTD 188 (386)
T ss_dssp ---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS
T ss_pred Cc-EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecCc
Confidence 75 457887765422 12222356777765543221 126799999998 55666665544
Q ss_pred c-eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceE--EEEeeeCCEEEEEEEeCCe-
Q 004866 263 L-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVV--EDVDFCKTHMALILREGRT- 338 (726)
Q Consensus 263 ~-~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l--~~~~~~~~~lv~~~~~~g~- 338 (726)
- -....+|....++..+.++... ..+.+|+.++.+ . +..+.+....+.... +.+...+..|++.....|.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~--~Vd~RiW~i~~d-g---~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWD--LVDQRIWTINTD-G---SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TT--TSS-SEEEEETT-S------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred cccCcccCCCCCCEEEEeccCCcc--eeceEEEEEEcC-C---CcceeeecCCCCcccccccccCCCCEEEEEeecCCCC
Confidence 2 1334556555555555543321 123578888876 2 233333333222222 3455567777775554443
Q ss_pred -eEEEEEecCCC
Q 004866 339 -YRLCSVSLPLP 349 (726)
Q Consensus 339 -~~l~~~~l~~~ 349 (726)
..|..+++.++
T Consensus 263 ~~~i~~~d~~t~ 274 (386)
T PF14583_consen 263 DFWIAGYDPDTG 274 (386)
T ss_dssp -EEEEEE-TTT-
T ss_pred ceEEEeeCCCCC
Confidence 36777887764
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-08 Score=123.37 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=84.2
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHH
Q 004866 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDF 557 (726)
Q Consensus 478 i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~ 557 (726)
+..++.+..... ....|.||++||..+.. ..|......|. .+|.|+.+|.||+|.+...-............++++
T Consensus 1356 ~~~~i~~~~~G~-~~~~~~vVllHG~~~s~--~~w~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1356 FSCLIKVHEVGQ-NAEGSVVLFLHGFLGTG--EDWIPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred eEEEEEEEecCC-CCCCCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHH
Confidence 566555433211 12357899999976654 35766666664 469999999999997642110000001122457777
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 558 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 558 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
.+.+..++++ ...+++.++|+||||.+++.++.++|++++++|+.++.
T Consensus 1432 a~~l~~ll~~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~ 1479 (1655)
T PLN02980 1432 ADLLYKLIEH--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGS 1479 (1655)
T ss_pred HHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCC
Confidence 7766666654 24479999999999999999999999999999987754
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=114.73 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=71.8
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 471 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 471 ~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
...||.+|.+..+ + +...|.||++||..+.. ..|......| .+||.|+.+|+||+|.+.... ...
T Consensus 8 ~~~~g~~l~~~~~---g---~~~~~~ivllHG~~~~~--~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~------~~~ 72 (582)
T PRK05855 8 VSSDGVRLAVYEW---G---DPDRPTVVLVHGYPDNH--EVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK------RTA 72 (582)
T ss_pred EeeCCEEEEEEEc---C---CCCCCeEEEEcCCCchH--HHHHHHHHHh-hcceEEEEecCCCCCCCCCCC------ccc
Confidence 4468888876543 1 12358999999986543 4466666666 679999999999999764221 111
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 551 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
..+++++.+.+..+++.-.. +.++.++||||||.+++.++.+
T Consensus 73 ~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 73 AYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred ccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhC
Confidence 23566666666666654211 2349999999999888777765
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=113.05 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=91.4
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch--HHHHHHHHCC-cEEEEEccCCCCCCCC-cccccc-
Q 004866 471 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR--SELKSLLDRG-WVVAFADVRGGGGGGK-KWHHDG- 545 (726)
Q Consensus 471 ~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~--~~~~~l~~~G-~~v~~~d~RG~g~~g~-~~~~~~- 545 (726)
.|.|..-+ .|+.|. .+..+.|+|||+|||.- .++.... ..-+.|+++| ++|+.+|||-+- +|. .+....
T Consensus 75 ~sEDCL~L--NIwaP~--~~a~~~PVmV~IHGG~y-~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~-lGfL~~~~~~~ 148 (491)
T COG2272 75 GSEDCLYL--NIWAPE--VPAEKLPVMVYIHGGGY-IMGSGSEPLYDGSALAARGDVVVVSVNYRLGA-LGFLDLSSLDT 148 (491)
T ss_pred ccccceeE--EeeccC--CCCCCCcEEEEEecccc-ccCCCcccccChHHHHhcCCEEEEEeCccccc-ceeeehhhccc
Confidence 46677544 466777 33456899999999622 1222222 3457899998 999999999643 221 111111
Q ss_pred -cccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEeCCccc
Q 004866 546 -RRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLD 609 (726)
Q Consensus 546 -~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~~d 609 (726)
........+.|++.+++|+.++- --||++|.|+|.|+|++.++.++.. |. +|+.+|+.+|-.-
T Consensus 149 ~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 149 EDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 11111257899999999998751 1399999999999999999988874 65 7999999888664
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-08 Score=91.53 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCC--------CcccccccccCCCCcHHHHHHHHHHHHHc
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG--------KKWHHDGRRTKKLNSIKDFISCARFLIEK 567 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g--------~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 567 (726)
+||.+.--+|.+. +.-...+..++..||.|++||+-.+.-+. ..|.+ +..-...+.|+.+.++||..+
T Consensus 41 ~li~i~DvfG~~~-~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~---~~~~~~~~~~i~~v~k~lk~~ 116 (242)
T KOG3043|consen 41 VLIVIQDVFGFQF-PNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMK---GHSPPKIWKDITAVVKWLKNH 116 (242)
T ss_pred EEEEEEeeecccc-HHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHh---cCCcccchhHHHHHHHHHHHc
Confidence 5555544444321 11234556778889999999975442111 12222 222345789999999999976
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcc
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPY 647 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~ 647 (726)
+ ++.+||++|.++||-++..+....| +|.|+++..|.. .+.++
T Consensus 117 g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~------------------------~d~~D---------- 159 (242)
T KOG3043|consen 117 G--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSF------------------------VDSAD---------- 159 (242)
T ss_pred C--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCc------------------------CChhH----------
Confidence 5 4589999999999988887777666 788888766521 11111
Q ss_pred cccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc-h------h---hHHHHHHHHH
Q 004866 648 DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-R------Y---LQCKESALET 717 (726)
Q Consensus 648 ~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~------~---~~~~~~~~~~ 717 (726)
+. +++.|++++-++.|..||+..-.++-++|++...- ...+.+|++.+||+.. | + ...+..++.+
T Consensus 160 --~~-~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~--~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~ 234 (242)
T KOG3043|consen 160 --IA-NVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAV--GSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFI 234 (242)
T ss_pred --Hh-cCCCCEEEEeecccccCCHHHHHHHHHHHhcCccc--ceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHH
Confidence 22 36789999999999999999999999999886532 1123338999999763 2 1 1223355668
Q ss_pred HHHHHhh
Q 004866 718 AFLIKMM 724 (726)
Q Consensus 718 ~fl~~~l 724 (726)
.||.++|
T Consensus 235 ~Wf~~y~ 241 (242)
T KOG3043|consen 235 SWFKHYL 241 (242)
T ss_pred HHHHHhh
Confidence 8988876
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-08 Score=100.59 Aligned_cols=221 Identities=16% Similarity=0.115 Sum_probs=128.8
Q ss_pred CCCccEEEEEcCCCCCCCCccc---hHHHHHHHHCCcEEEEEccC--------------CCC-CCCCcccccccccCCCC
Q 004866 491 ENQNPGLLHGHGAYGELLDKRW---RSELKSLLDRGWVVAFADVR--------------GGG-GGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~---~~~~~~l~~~G~~v~~~d~R--------------G~g-~~g~~~~~~~~~~~~~~ 552 (726)
+++.|++++.||-.... +.+ ..........|++++.+|.. |++ ++=..|.+...... ..
T Consensus 51 ~~~ipV~~~l~G~t~~~--~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~ 127 (316)
T COG0627 51 GRDIPVLYLLSGLTCNE--PNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PY 127 (316)
T ss_pred CCCCCEEEEeCCCCCCC--CceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-cc
Confidence 57789999999854321 222 22333444579999998433 332 12123333221111 34
Q ss_pred cHHHHHHH-HH-HHHHcCCCCC--CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC---CCCCChhh
Q 004866 553 SIKDFISC-AR-FLIEKEIVKE--HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP---ILPLIAAD 625 (726)
Q Consensus 553 ~~~D~~~~-~~-~l~~~~~~d~--~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~---~~~~~~~~ 625 (726)
.+++++.. +- .+.+...++. ++.+|.|+||||+-++.++..+|++|+.+.+.+|+++....+... ..++....
T Consensus 128 q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~ 207 (316)
T COG0627 128 QWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKA 207 (316)
T ss_pred chhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCcc
Confidence 56666542 22 2333344454 389999999999999999999999999999999999877544332 11111111
Q ss_pred -hcccCCCCChhHHHHHHhcCccccccc---CC---------CCCeEEE-EecCCCCc--ChHHHHHHHHHHHhcCCCCC
Q 004866 626 -YEEFGYPGDIDDFHAIRNYSPYDNIQK---DV---------LYPAVLV-TSSFNTRF--GVWEAAKWVARVRESTIYDP 689 (726)
Q Consensus 626 -~~~~g~~~~~~~~~~~~~~sp~~~i~~---~~---------~~P~lli-~g~~D~~V--~~~~~~~~~~~L~~~~~~~~ 689 (726)
...||.+.+ ...++++|..++.+ .. ..|.+++ +|..|... ....+..|.++++++|.+
T Consensus 208 ~~~~~G~~~~----~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~-- 281 (316)
T COG0627 208 FNAMLGPDSD----PAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIP-- 281 (316)
T ss_pred HHHhcCCCcc----ccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCC--
Confidence 112454432 23566677766653 21 3344555 44445322 233488999999999854
Q ss_pred CCcEEEEcCCCCCCCchhhHHH-HHHHHHHHHHHhhc
Q 004866 690 KRPILLNLTTDIVEENRYLQCK-ESALETAFLIKMME 725 (726)
Q Consensus 690 ~~~~~~~~~~gH~~~~~~~~~~-~~~~~~~fl~~~l~ 725 (726)
..+...++..|. ...+. ..+..+.|+...|+
T Consensus 282 -~~~~~~~~G~Hs----w~~w~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 282 -NGVRDQPGGDHS----WYFWASQLADHLPWLAGALG 313 (316)
T ss_pred -ceeeeCCCCCcC----HHHHHHHHHHHHHHHHHHhc
Confidence 122214567785 33333 45567889888775
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-07 Score=89.08 Aligned_cols=182 Identities=14% Similarity=0.012 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDRGW--VVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|+|+||--.+..........+++.+.|. .+..+|++ ...++.++.+..++++. .++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------------~~p~~a~~~l~~~i~~~--~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-------------------PFPEEAIAQLEQLIEEL--KPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC-------------------cCHHHHHHHHHHHHHhC--CCC
Confidence 37999985443322222344567777664 45555544 24566677777777653 334
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCC--CChhHHHHHHhcCcccccc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYP--GDIDDFHAIRNYSPYDNIQ 651 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~sp~~~i~ 651 (726)
.++|+|.|+||+.+.+++.+++ .++ |+..|.+.....+.. .+... ....++.. .+......++++.... +.
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~-~iG~~--~~~~~~e~~~~~~~~~~~l~~l~~~~-~~ 132 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQD-YIGEQ--TNPYTGESYELTEEHIEELKALEVPY-PT 132 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHH-hhCcc--ccCCCCccceechHhhhhcceEeccc-cC
Confidence 4999999999999999998764 344 888898876654321 11100 00011111 1112222233222111 11
Q ss_pred cCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHH
Q 004866 652 KDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFL 720 (726)
Q Consensus 652 ~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 720 (726)
...+.+++++..|..+++.++.+.++ .. ..++.++++|.+..-.+ ....+.+|+
T Consensus 133 --~~~~~lvll~~~DEvLd~~~a~~~~~---~~-------~~~i~~ggdH~f~~f~~---~l~~i~~f~ 186 (187)
T PF05728_consen 133 --NPERYLVLLQTGDEVLDYREAVAKYR---GC-------AQIIEEGGDHSFQDFEE---YLPQIIAFL 186 (187)
T ss_pred --CCccEEEEEecCCcccCHHHHHHHhc---Cc-------eEEEEeCCCCCCccHHH---HHHHHHHhh
Confidence 24578999999999999977655553 22 12236888998765333 333455665
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-07 Score=102.14 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCCCCC---ccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 495 PGLLHGHGAYGELLD---KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 495 P~vl~~hGg~~~~~~---~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
+-||++||......- ..-...+.+|+++||.|+++|+||.|.....+. ......+++.++++++.+. ..
T Consensus 189 ~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~------~ddY~~~~i~~al~~v~~~--~g 260 (532)
T TIGR01838 189 TPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKT------FDDYIRDGVIAALEVVEAI--TG 260 (532)
T ss_pred CcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCC------hhhhHHHHHHHHHHHHHHh--cC
Confidence 446677774322110 111357889999999999999999886533221 1112345677888888753 45
Q ss_pred CCcEEEEEecccHHHHHH----HHHcC-CCceeEEEEeCCccccc
Q 004866 572 EHKLAGWGYSAGGLLVAA----AINCC-PDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~----~~~~~-p~~f~a~v~~~p~~d~~ 611 (726)
.+++.++|+|+||.+++. ++..+ |++++++++.+..+|..
T Consensus 261 ~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~ 305 (532)
T TIGR01838 261 EKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFS 305 (532)
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCC
Confidence 689999999999998532 33444 77889888887777653
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=97.56 Aligned_cols=214 Identities=18% Similarity=0.198 Sum_probs=123.1
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHC-CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
+..|.||.+||.-. ....|......|... |+.|.++|..|+|-++ +...+ ......+....+..+..+-..
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s--~~~~~----~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS--PLPRG----PLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCCCCcCC--CCCCC----CceehhHHHHHHHHHHHhhcC
Confidence 34678899998433 224566666666654 7999999999966321 11111 125667777777666654333
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEE---EeCCcccccccc-------cC-------CCCCCC---h-hhhcc-
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV---LEVPFLDATNTL-------LY-------PILPLI---A-ADYEE- 628 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v---~~~p~~d~~~~~-------~~-------~~~~~~---~-~~~~~- 628 (726)
.++.++|+|+||+++..+|..+|+..+.+| ...+........ .. ...|.. . ..+.+
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 449999999999999999999999999999 444433221110 00 000000 0 00000
Q ss_pred --------cCCC-CChhHHHHHH------------------h-----cCcccccccCCCCCeEEEEecCCCCcChHHHHH
Q 004866 629 --------FGYP-GDIDDFHAIR------------------N-----YSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 676 (726)
Q Consensus 629 --------~g~~-~~~~~~~~~~------------------~-----~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~ 676 (726)
+.++ ...+....+. . ..+...+++..+.|+|+++|..|..+|.+.+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 0011 0011100010 0 122234555345999999999999999998888
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 677 WVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 677 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
+.+.+ .+. +... .+++||.-.- +......+....|+.++
T Consensus 286 ~~~~~--pn~----~~~~-I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 286 LKKKL--PNA----ELVE-IPGAGHLPHL-ERPEEVAALLRSFIARL 324 (326)
T ss_pred HHhhC--CCc----eEEE-eCCCCccccc-CCHHHHHHHHHHHHHHh
Confidence 87777 221 2222 6899995322 22233344456888764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=87.84 Aligned_cols=249 Identities=13% Similarity=0.095 Sum_probs=156.9
Q ss_pred eeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEec--CCCCCceEEEEEcC
Q 004866 127 SEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTD--QNKRPYQIYCSIIG 201 (726)
Q Consensus 127 ~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~--~~~~~~~l~~~~l~ 201 (726)
.-..|| |.+|.|++.. +||..++.+|+...++. .+-+..+.++|||++++|++.- +.....+||.++..
T Consensus 42 ~~l~PDI~GD~IiFt~~D------dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e 115 (668)
T COG4946 42 YYLNPDIYGDRIIFTCCD------DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSE 115 (668)
T ss_pred hhcCCcccCcEEEEEech------HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCC
Confidence 335665 8889998742 38999999999988876 5566789999999999997642 23345689999998
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC---ceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEE
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT---SSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLF 278 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~---~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~ 278 (726)
.++..+++|-. .+|---..|+|||+.|+.+..... ..++|.++.++. +..++.-... .-.+-.|| .+++-
T Consensus 116 ~Ge~kRiTyfG--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--~~e~LnlGpa--thiv~~dg-~ivig 188 (668)
T COG4946 116 DGEAKRITYFG--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--KTEPLNLGPA--THIVIKDG-IIVIG 188 (668)
T ss_pred CCcEEEEEEec--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--eeeeccCCce--eeEEEeCC-EEEEc
Confidence 88866666542 233222579999998877665443 368999998773 2333322221 11222344 44544
Q ss_pred ecC---cccC--CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCc
Q 004866 279 TDA---AKEG--QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKG 353 (726)
Q Consensus 279 t~~---~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~ 353 (726)
.|. +.+. +.....+|+.-... ...++.++.- +..+...-+.++++|+....+|...|+..|++...
T Consensus 189 RntydLP~WK~YkGGtrGklWis~d~----g~tFeK~vdl--~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkD--- 259 (668)
T COG4946 189 RNTYDLPHWKGYKGGTRGKLWISSDG----GKTFEKFVDL--DGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKD--- 259 (668)
T ss_pred cCcccCcccccccCCccceEEEEecC----Ccceeeeeec--CCCcCCceEEcceEEEEecccCccceEEeccCCch---
Confidence 442 1111 11223455543222 2345554432 23355566778999999999999999999997432
Q ss_pred ceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 354 VVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
+ +.++ .+.+. . ..+.+.|+.+++|.-.+ .||.||+++.+++.|.
T Consensus 260 ---l---rrHT-nFtdY----Y-~R~~nsDGkrIvFq~~G-----dIylydP~td~lekld 303 (668)
T COG4946 260 ---L---RRHT-NFTDY----Y-PRNANSDGKRIVFQNAG-----DIYLYDPETDSLEKLD 303 (668)
T ss_pred ---h---hhcC-Cchhc----c-ccccCCCCcEEEEecCC-----cEEEeCCCcCcceeee
Confidence 1 1111 11111 1 12446689999886554 9999999988877653
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=113.20 Aligned_cols=133 Identities=16% Similarity=0.065 Sum_probs=82.5
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK--RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+.|- +...|+.|+......+.|++||+|||.-..-.. ........++.++++|+.+|||-+- +|.-.........
T Consensus 105 sEDC--L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~ 181 (535)
T PF00135_consen 105 SEDC--LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPS 181 (535)
T ss_dssp ES-----EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHB
T ss_pred CchH--HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCc
Confidence 4565 445578898765555899999999973322111 1223335567789999999999432 1110000000002
Q ss_pred CCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCc
Q 004866 550 KLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPF 607 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~ 607 (726)
+...+.|.+.|++|+.++-- =||+||.|+|+|+||..+...+..- ..+|+.+|+.+|.
T Consensus 182 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 182 GNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 44578999999999997621 2999999999999999998887751 3589999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=94.29 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=79.3
Q ss_pred ccEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEEccCC-CCCCCCcccccccccCCCCcHHHHHHHHHHHHHcC--C
Q 004866 494 NPGLLHGHGAYGELLD-KRWRSELKSLLDRGWVVAFADVRG-GGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE--I 569 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG-~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~ 569 (726)
.-+||++-|-..+-.. +........|...||.|+.+..+- .+++|..=. .++.+|+.++++||+... .
T Consensus 33 ~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g~ 104 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGGH 104 (303)
T ss_dssp SSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS---
T ss_pred CcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhccc
Confidence 3478888773222222 333455667766899999999986 335543211 257899999999999872 2
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCC-----CceeEEEEeCCcccccccccC------------------------CCCC
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCP-----DLFRAVVLEVPFLDATNTLLY------------------------PILP 620 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p-----~~f~a~v~~~p~~d~~~~~~~------------------------~~~~ 620 (726)
...++|+|+|||-|.--++..+.... ..+.++|+++||.|-...... ..+|
T Consensus 105 ~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp 184 (303)
T PF08538_consen 105 FGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILP 184 (303)
T ss_dssp ---S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG-
T ss_pred cCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceee
Confidence 36789999999999999988887542 568999999999985432110 0000
Q ss_pred CChhhhcccCCCCChhHH---------HHHH----hcCcc-cccccCCCCCeEEEEecCCCCcChH-HHHHHHHHHHhcC
Q 004866 621 LIAADYEEFGYPGDIDDF---------HAIR----NYSPY-DNIQKDVLYPAVLVTSSFNTRFGVW-EAAKWVARVREST 685 (726)
Q Consensus 621 ~~~~~~~~~g~~~~~~~~---------~~~~----~~sp~-~~i~~~~~~P~lli~g~~D~~V~~~-~~~~~~~~L~~~~ 685 (726)
........++.|....-+ +.+. .-.-+ .... .+..|+|++.++.|.-||.+ .-.++.++++.+-
T Consensus 185 ~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG-~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~ 263 (303)
T PF08538_consen 185 REFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFG-KVSKPLLVLYSGKDEYVPPWVDKEALLERWKAAT 263 (303)
T ss_dssp ---GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGG-G--S-EEEEEE--TT-------------------
T ss_pred ccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhc-cCCCceEEEecCCCceeccccccccccccccccc
Confidence 000000000122211000 0000 00011 1122 36779999999999888876 4467777777653
Q ss_pred CCCC--CCcEEEEcCCCCCCCchhh---HHHHHHHHHHHH
Q 004866 686 IYDP--KRPILLNLTTDIVEENRYL---QCKESALETAFL 720 (726)
Q Consensus 686 ~~~~--~~~~~~~~~~gH~~~~~~~---~~~~~~~~~~fl 720 (726)
.+.. ...-+ .+++.|....... +.....++..||
T Consensus 264 ~~~~~s~~S~i-I~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 264 NPKIWSPLSGI-IPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccc-cccccccccccccccccccccccccccC
Confidence 2110 01112 6899997654222 223344556665
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=93.91 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=74.2
Q ss_pred CCccEEEEEcCCCCCC-C---------Cccc-hHHH---HHHHHCCcEEEEEccCCCCC--------CCCcccccccc--
Q 004866 492 NQNPGLLHGHGAYGEL-L---------DKRW-RSEL---KSLLDRGWVVAFADVRGGGG--------GGKKWHHDGRR-- 547 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~-~---------~~~~-~~~~---~~l~~~G~~v~~~d~RG~g~--------~g~~~~~~~~~-- 547 (726)
.+.++||+.|+-.+.. . .+.| ...+ ..|=-.-|.|+++|.-|++. .|..=...+.+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 3468999999843321 0 1223 2221 23333469999999998863 11111111111
Q ss_pred ---cCCCCcHHHHHHHHHHHHHcCCCCCCcEE-EEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 548 ---TKKLNSIKDFISCARFLIEKEIVKEHKLA-GWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 548 ---~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
.....++.|+.+++..++++-.+ +++. ++|+||||+.++.++.++|++++.+|+.+.
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 12236899999999888875333 5775 999999999999999999999999998754
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-07 Score=84.78 Aligned_cols=238 Identities=16% Similarity=0.035 Sum_probs=129.3
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
..++..||..+++.++ |.+ ++.+-.+.+-|+++... -.|....+.++.+||.|+..||||.|++-..=-.....
T Consensus 8 ~~l~~~DG~~l~~~~~-pA~----~~~~g~~~va~a~Gv~~-~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~ 81 (281)
T COG4757 8 AHLPAPDGYSLPGQRF-PAD----GKASGRLVVAGATGVGQ-YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQW 81 (281)
T ss_pred cccccCCCccCccccc-cCC----CCCCCcEEecccCCcch-hHhHHHHHHhhccCceEEEEecccccCCCccccccCcc
Confidence 5688999999998664 443 23343455566666431 23456677888899999999999999764321110001
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC-----------
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY----------- 616 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~----------- 616 (726)
....-...|+.++++++.+.. -...+..+|||+||.+...+.. +|..-.++|..++. .|...|..
T Consensus 82 ~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~ga-gwsg~m~~~~~l~~~~l~~ 157 (281)
T COG4757 82 RYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGA-GWSGWMGLRERLGAVLLWN 157 (281)
T ss_pred chhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEecccc-ccccchhhhhcccceeecc
Confidence 111124578889999998632 2357899999999987665544 56322222222211 12111100
Q ss_pred CCCC-CC----hhhhcccCCCCC-h-hHHHHHHhcC---------ccc-----ccccCCCCCeEEEEecCCCCcChHHHH
Q 004866 617 PILP-LI----AADYEEFGYPGD-I-DDFHAIRNYS---------PYD-----NIQKDVLYPAVLVTSSFNTRFGVWEAA 675 (726)
Q Consensus 617 ~~~~-~~----~~~~~~~g~~~~-~-~~~~~~~~~s---------p~~-----~i~~~~~~P~lli~g~~D~~V~~~~~~ 675 (726)
--.| ++ .....-+|...+ + ..+..++..+ |-. -.++ +++|++++....|+-+|+....
T Consensus 158 lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaa-VrtPi~~~~~~DD~w~P~As~d 236 (281)
T COG4757 158 LVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAA-VRTPITFSRALDDPWAPPASRD 236 (281)
T ss_pred ccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHH-hcCceeeeccCCCCcCCHHHHH
Confidence 0000 00 000111222211 1 1222222221 111 1223 7899999998889999999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEEcC---CCCCCCchhhHHHHHHHHHHHH
Q 004866 676 KWVARVRESTIYDPKRPILLNLT---TDIVEENRYLQCKESALETAFL 720 (726)
Q Consensus 676 ~~~~~L~~~~~~~~~~~~~~~~~---~gH~~~~~~~~~~~~~~~~~fl 720 (726)
+|...-+++-.+ ...+-+. -||.+--|+.....+.+.+.|+
T Consensus 237 ~f~~~y~nApl~----~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 237 AFASFYRNAPLE----MRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHhhhcCccc----ceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 998888876432 2222222 5896433333233344445554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=82.63 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=93.7
Q ss_pred ceeeCCCCCEEEEEEeCC----CC---cEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 126 LSEVSPDHKFLAYTMYDK----DN---DYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~----g~---e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.+.|+|+|++|++.++++ +. ....|+.++..+.....+.. .+.+..++|+|+|+.|+..... .+.+|.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~---~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS---MPAKVT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc---CCcccE
Confidence 346999999999987732 11 24578888877664433322 3347899999999999877432 233677
Q ss_pred EEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec--cCCceEEeeeecCCE
Q 004866 197 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE--CEGLAHCIVEHHEGF 274 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~g~~ 274 (726)
++++.. .....+. ... .-.+.|||+|++|++........+|.++|..+ . +.+.. ........|+|+|++
T Consensus 87 lyd~~~--~~i~~~~--~~~-~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~--~~i~~~~~~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 87 LYDVKG--KKIFSFG--TQP-RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--K--KKISTFEHSDATDVEWSPDGRY 157 (194)
T ss_pred EEcCcc--cEeEeec--CCC-ceEEEECCCCCEEEEEEccCCCcEEEEEECCC--C--EEeeccccCcEEEEEEcCCCCE
Confidence 777742 2222222 222 22578999999999887655556788899875 2 23332 223345678999999
Q ss_pred EEEEecC
Q 004866 275 LYLFTDA 281 (726)
Q Consensus 275 l~~~t~~ 281 (726)
|+..+..
T Consensus 158 ~~ta~t~ 164 (194)
T PF08662_consen 158 LATATTS 164 (194)
T ss_pred EEEEEec
Confidence 8877764
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=85.00 Aligned_cols=205 Identities=16% Similarity=0.132 Sum_probs=125.9
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
...+.+.+.+|..+..--.|-.....+.+..+||-+||.||+. ..|......|.+.|+.++.+|++|.|-....
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH--~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~---- 79 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSH--NDFKYIRPPLDEAGIRFIGINYPGFGFTPGY---- 79 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecCCCCCCceeEEEecCCCCCc--cchhhhhhHHHHcCeEEEEeCCCCCCCCCCC----
Confidence 3456677888887776666655444444556899999999965 6788889999999999999999998853211
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc-cc------------c
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL-DA------------T 611 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~-d~------------~ 611 (726)
.. ....-.+-..-++.|.++--++ +++.++|||.|+--++.++..+|- .++++..|+- -. .
T Consensus 80 --~~-~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~~--~g~~lin~~G~r~HkgIrp~~r~~~i 153 (297)
T PF06342_consen 80 --PD-QQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHPL--HGLVLINPPGLRPHKGIRPLSRMETI 153 (297)
T ss_pred --cc-cccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCcc--ceEEEecCCccccccCcCHHHHHHHH
Confidence 11 1123334444455555543344 899999999999999999998863 3566555431 00 0
Q ss_pred ccccCCCCCCCh------hhhcccCCCC--ChhHHHHHHhcCc---------ccccccCCCCCeEEEEecCCCCcChHHH
Q 004866 612 NTLLYPILPLIA------ADYEEFGYPG--DIDDFHAIRNYSP---------YDNIQKDVLYPAVLVTSSFNTRFGVWEA 674 (726)
Q Consensus 612 ~~~~~~~~~~~~------~~~~~~g~~~--~~~~~~~~~~~sp---------~~~i~~~~~~P~lli~g~~D~~V~~~~~ 674 (726)
.++ ..-+|... ..+...|--- -.+....++...- ++.+.+ .+.|.|++.|+.|..|--+.+
T Consensus 154 ~~l-~~~lp~~~~~~i~~~~y~~iG~KV~~GeeA~na~r~m~~~df~~q~~~I~~ln~-~~ikvli~ygg~DhLIEeeI~ 231 (297)
T PF06342_consen 154 NYL-YDLLPRFIINAIMYFYYRMIGFKVSDGEEAINAMRSMQNCDFEEQKEYIDKLNK-KPIKVLIAYGGKDHLIEEEIS 231 (297)
T ss_pred HHH-HHHhhHHHHHHHHHHHHHHhCeeecChHHHHHHHHHHHhcCHHHHHHHHHHhcc-CCCcEEEEEcCcchhhHHHHH
Confidence 000 00011100 0111123211 1222333332211 123334 468999999999988888888
Q ss_pred HHHHHHHHh
Q 004866 675 AKWVARVRE 683 (726)
Q Consensus 675 ~~~~~~L~~ 683 (726)
.++....+.
T Consensus 232 ~E~a~~f~~ 240 (297)
T PF06342_consen 232 FEFAMKFKG 240 (297)
T ss_pred HHHHHHhCC
Confidence 887777654
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=85.36 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCC--------------CCCccccccc--ccCC----
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGG--------------GGKKWHHDGR--RTKK---- 550 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~--------------~g~~~~~~~~--~~~~---- 550 (726)
+.++|+||+-||--+ .+.-|+.....||++||+|+++..|-... +-.+|..-.. .+-+
T Consensus 115 ~~k~PvvvFSHGLgg--sRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~i 192 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGG--SRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHI 192 (399)
T ss_pred CCCccEEEEeccccc--chhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEe
Confidence 578999999999544 33567888899999999999999996542 1122221100 0000
Q ss_pred -----CCcHHHHHHHHHHHHH---------------------cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 551 -----LNSIKDFISCARFLIE---------------------KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 551 -----~~~~~D~~~~~~~l~~---------------------~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
....+.+..|++-|.+ ++.+|..+++|+|||.||..++++...+ ..|+|+|+.
T Consensus 193 rNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~l 271 (399)
T KOG3847|consen 193 RNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIAL 271 (399)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeeee
Confidence 0123444444444433 1336778999999999999998888854 569999954
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=94.51 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=94.7
Q ss_pred EEEEEEECCC-CcEEEEEEEEcCCCCC---CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 465 CEQYDVPSHD-GISVPLTIIYSPKYKK---ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 465 ~~~~~~~s~d-G~~i~~~l~~p~~~~~---~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
...+++.... +.+++.++++|..... ..+.|+|++-||.-.. ...|....+.|++.||+|+.++..|+..-+..
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~ 115 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAP 115 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCC
Confidence 5556665433 5688999998876421 2479999999984222 45688889999999999999999997754333
Q ss_pred cccccccc----CCCCcHHHHHHHHHHHHHc---C----CCCCCcEEEEEecccHHHHHHHHHcCCC
Q 004866 541 WHHDGRRT----KKLNSIKDFISCARFLIEK---E----IVKEHKLAGWGYSAGGLLVAAAINCCPD 596 (726)
Q Consensus 541 ~~~~~~~~----~~~~~~~D~~~~~~~l~~~---~----~~d~~ri~i~G~S~GG~l~~~~~~~~p~ 596 (726)
-...+... .......|+...+++|.+. + -.|+.||++.|||+||+.++.++..+.+
T Consensus 116 ~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 116 AAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 33333111 1234567888888888876 3 4689999999999999999999876654
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-08 Score=97.02 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=63.3
Q ss_pred cEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEE
Q 004866 524 WVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 603 (726)
Q Consensus 524 ~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 603 (726)
|.|+++|.||.|.+...| ..........|+.+.++.+++.--. +++.++|+||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHW----DPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSCC----GSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCc----cCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 679999999999764211 1223345789999999999875333 4599999999999999999999999999999
Q ss_pred eCCc
Q 004866 604 EVPF 607 (726)
Q Consensus 604 ~~p~ 607 (726)
.+++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9985
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=105.56 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=64.5
Q ss_pred CccEEEEEcCCCCCCCCccchH-----HHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHH----HHHHH
Q 004866 493 QNPGLLHGHGAYGELLDKRWRS-----ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI----SCARF 563 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~-----~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~----~~~~~ 563 (726)
..|.||++||...... .|.. .+..|+++||.|+++|+..++ .. ... ....+.|.+ ++++.
T Consensus 66 ~~~plllvhg~~~~~~--~~d~~~~~s~v~~L~~~g~~v~~~d~G~~~---~~---~~~---~~~~l~~~i~~l~~~l~~ 134 (994)
T PRK07868 66 VGPPVLMVHPMMMSAD--MWDVTRDDGAVGILHRAGLDPWVIDFGSPD---KV---EGG---MERNLADHVVALSEAIDT 134 (994)
T ss_pred CCCcEEEECCCCCCcc--ceecCCcccHHHHHHHCCCEEEEEcCCCCC---hh---HcC---ccCCHHHHHHHHHHHHHH
Confidence 3478899999655432 2332 368899999999999963221 11 000 012444443 33333
Q ss_pred HHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCcccc
Q 004866 564 LIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPFLDA 610 (726)
Q Consensus 564 l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~d~ 610 (726)
+.+.. .+++.++|+||||.+++.++..+ |++++.+|+.+..+|+
T Consensus 135 v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 135 VKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT 179 (994)
T ss_pred HHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence 33222 25799999999999998777644 5688888876655543
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=101.04 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc----c-------c-----C-C----
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR----R-------T-----K-K---- 550 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~----~-------~-----~-~---- 550 (726)
+++|+||+-||-.+. +..|+.....||++||+|++++.|-+............ . . . .
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 679999999997663 45689999999999999999999954322111100000 0 0 0 0
Q ss_pred ----------CCcHHHHHHHHHHHHH--c------------------CCCCCCcEEEEEecccHHHHHHHHHcCCCceeE
Q 004866 551 ----------LNSIKDFISCARFLIE--K------------------EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRA 600 (726)
Q Consensus 551 ----------~~~~~D~~~~~~~l~~--~------------------~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a 600 (726)
..-..|+..+++.|.+ . +-+|.++|+++|||+||..++.++.+. .+|+|
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 0123455666666643 1 335788999999999999999988864 78999
Q ss_pred EEEeCC
Q 004866 601 VVLEVP 606 (726)
Q Consensus 601 ~v~~~p 606 (726)
+|+.-|
T Consensus 255 ~I~LD~ 260 (379)
T PF03403_consen 255 GILLDP 260 (379)
T ss_dssp EEEES-
T ss_pred EEEeCC
Confidence 996544
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-07 Score=86.23 Aligned_cols=134 Identities=21% Similarity=0.184 Sum_probs=97.2
Q ss_pred CCCceEEEEEEECC----CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCC
Q 004866 460 SEFYSCEQYDVPSH----DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG 535 (726)
Q Consensus 460 ~~~~~~~~~~~~s~----dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g 535 (726)
...+.++.+.+.+. ---..+..|+.|.. .+.+|+|++.||..-. ...|+...+.++++||+|++|+.-..-
T Consensus 11 ~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~---~G~yPVilF~HG~~l~--ns~Ys~lL~HIASHGfIVVAPQl~~~~ 85 (307)
T PF07224_consen 11 TGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSE---AGTYPVILFLHGFNLY--NSFYSQLLAHIASHGFIVVAPQLYTLF 85 (307)
T ss_pred cCCceeEEEeecCCCCCCCCCCCCeEEecCCc---CCCccEEEEeechhhh--hHHHHHHHHHHhhcCeEEEechhhccc
Confidence 45667777777321 12356777777763 4789999999986543 345667788999999999999976432
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHHc--------CCCCCCcEEEEEecccHHHHHHHHHcC-CC-ceeEEEEeC
Q 004866 536 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEK--------EIVKEHKLAGWGYSAGGLLVAAAINCC-PD-LFRAVVLEV 605 (726)
Q Consensus 536 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~-~f~a~v~~~ 605 (726)
. ..+..++++....++||-+. -..+-+++++.|||.||-.+.++|..+ .+ .|.|.|..-
T Consensus 86 ~-----------p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiD 154 (307)
T PF07224_consen 86 P-----------PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGID 154 (307)
T ss_pred C-----------CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheeccc
Confidence 1 23446788899999999753 113778999999999999999988866 33 388888777
Q ss_pred Cccc
Q 004866 606 PFLD 609 (726)
Q Consensus 606 p~~d 609 (726)
|+-.
T Consensus 155 PV~G 158 (307)
T PF07224_consen 155 PVAG 158 (307)
T ss_pred ccCC
Confidence 7654
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=94.59 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=77.5
Q ss_pred CCccEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRS-ELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
...|++|++||..+.. ...|.. ....|+. .++.|+++|+++++.. .+..+. . .-...-+++...+++|.++..
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a~-~-~~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQAV-N-NTRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHHH-H-hHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999965543 233433 3444554 6899999999986321 111110 0 001123566778888887655
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+.++|.++|||+||.+++.++.+.|++++.+++..|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 677899999999999999999999999999999887754
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.1e-07 Score=87.65 Aligned_cols=202 Identities=15% Similarity=0.006 Sum_probs=113.8
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHC----CcEEEEEccCCCCCCCCcc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR----GWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~----G~~v~~~d~RG~g~~g~~~ 541 (726)
+.+.+.+.-..+....+++|++..+..++|+++..||-......+- ......|+.. .-+++.+|+----.....+
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i-~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~ 148 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRI-PRILDSLIAAGEIPPAILVGIDYIDVKKRREEL 148 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCccccccEEEEeccHHHHhcCCh-HHHHHHHHHcCCCCCceEEecCCCCHHHHHHHh
Confidence 4444444333456677889999888889999999998433222221 2233445543 5677777754211111111
Q ss_pred cccccccCCCCcHHH-HHHH-HHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC
Q 004866 542 HHDGRRTKKLNSIKD-FISC-ARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY 616 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D-~~~~-~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~ 616 (726)
+ ....+.+ +... +=++ +..+ -++++-+++|.|+||+.+++++.++|++|..+++++|.+++.-. +
T Consensus 149 ~-------~n~~~~~~L~~eLlP~v-~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~--~ 218 (299)
T COG2382 149 H-------CNEAYWRFLAQELLPYV-EERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPL--D 218 (299)
T ss_pred c-------ccHHHHHHHHHHhhhhh-hccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCcc--c
Confidence 1 0111111 1111 1222 2222 26788899999999999999999999999999999998875410 0
Q ss_pred CCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCC-CCcChHHHHHHHHHHHhcCCCCCCCcEEE
Q 004866 617 PILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILL 695 (726)
Q Consensus 617 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D-~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 695 (726)
. ..+.. . +...+-++.+.. ... .++..|+.. ...+ ...++++.|+..+. ++.+
T Consensus 219 -~-------~~~~~------~---~~~l~~~~a~~~-~~~-~~l~~g~~~~~~~~--pNr~L~~~L~~~g~-----~~~y 272 (299)
T COG2382 219 -T-------QPQGE------V---AESLKILHAIGT-DER-IVLTTGGEEGDFLR--PNRALAAQLEKKGI-----PYYY 272 (299)
T ss_pred -c-------ccccc------h---hhhhhhhhccCc-cce-EEeecCCccccccc--hhHHHHHHHHhcCC-----ccee
Confidence 0 01111 1 111122222332 222 444555544 4444 46789999999884 4555
Q ss_pred -EcCCCCCCC
Q 004866 696 -NLTTDIVEE 704 (726)
Q Consensus 696 -~~~~gH~~~ 704 (726)
...+||-..
T Consensus 273 re~~GgHdw~ 282 (299)
T COG2382 273 REYPGGHDWA 282 (299)
T ss_pred eecCCCCchh
Confidence 334499543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00028 Score=77.31 Aligned_cols=253 Identities=16% Similarity=0.087 Sum_probs=151.3
Q ss_pred CeeECCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCC
Q 004866 54 PLRWGPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDH 133 (726)
Q Consensus 54 p~~~g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG 133 (726)
++++|.++.|+-..+|.+...++.+.... + +.+-|. +... ..+.+.|++||
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--------------------g--~~l~d~--i~~~-----~~~~~~W~~d~ 181 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLET--------------------G--KFLPDG--IENP-----KFSSVSWSDDG 181 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTT--------------------T--EEEEEE--EEEE-----ESEEEEECTTS
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCC--------------------C--cCcCCc--cccc-----ccceEEEeCCC
Confidence 45788999999888888887777766531 1 222221 1111 11237899999
Q ss_pred CEEEEEEeCCCCc------EEEEEEEECCCCcee--cccc---ccc-cceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 134 KFLAYTMYDKDND------YFTLSVRNLNSGALC--SKPQ---AVR-VSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 134 ~~la~~~~~~g~e------~~~l~v~dl~tg~~~--~~~~---~~~-~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+.+.|+....... ..+|+.+.+.++... .+.. ... +..+.+|+|+++|++....... .+.+|++++.
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~ 260 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLD 260 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECC
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEecc
Confidence 9999987655545 789999999887543 2211 112 4578899999999988766544 5799999998
Q ss_pred CC---C-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCC-CeE-EeeccCCc-eEEeeeecCC
Q 004866 202 ST---D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFS-GLT-LIWECEGL-AHCIVEHHEG 273 (726)
Q Consensus 202 t~---~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~-~~~-~l~~~~~~-~~~~~~~~g~ 273 (726)
.. . .-.++....+...+ .+... |..+++.++.+. ...|..+++.++.. ... .+.+.... ..-.+...++
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~-~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 337 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEY-YVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD 337 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EE-EEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT
T ss_pred ccCCCcCCcEEEeCCCCceEE-EEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC
Confidence 75 2 33444433333322 12222 666667776544 47899999988642 233 55555443 3345566788
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE-EeecCCCceEEEEe--eeCCEEEEEEEeCCee-EEEEEecCCC
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES-VFIDDQGLVVEDVD--FCKTHMALILREGRTY-RLCSVSLPLP 349 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~~--~~~~~lv~~~~~~g~~-~l~~~~l~~~ 349 (726)
+|++..+.++ ..+|..+++. ..+.. .++......+..+. ...+.+.+.+..--.| .++.+|+.++
T Consensus 338 ~Lvl~~~~~~------~~~l~v~~~~-----~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 338 YLVLSYRENG------SSRLRVYDLD-----DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEEETT------EEEEEEEETT------TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEEEECC------ccEEEEEECC-----CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 8888877654 3567777764 12221 12221223334433 3357888887776664 7899998765
Q ss_pred C
Q 004866 350 A 350 (726)
Q Consensus 350 ~ 350 (726)
+
T Consensus 407 ~ 407 (414)
T PF02897_consen 407 E 407 (414)
T ss_dssp C
T ss_pred C
Confidence 3
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00023 Score=73.74 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=84.9
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
..+.|||||+.++.+.... ..|+++|+.+++.+.... ......+.|+|||+.+|.+... ...|+++++.+.
T Consensus 34 ~~l~~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~----~~~l~~~d~~~~ 105 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDS----DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED----DNLVTVIDIETR 105 (300)
T ss_pred CceEECCCCCEEEEEECCC----CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC----CCeEEEEECCCC
Confidence 3567999999875553322 258999999998765322 2234568999999988766322 237888998764
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEec
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~ 280 (726)
. ....+.... ....+.++|||+++++..... ..++.+|..+.. ....+..........++++|+.|++.+.
T Consensus 106 ~-~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~--~~~~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 106 K-VLAEIPVGV--EPEGMAVSPDGKIVVNTSETT--NMAHFIDTKTYE-IVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred e-EEeEeeCCC--CcceEEECCCCCEEEEEecCC--CeEEEEeCCCCe-EEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 3 111222111 123578999999988766532 345667776532 1111222222223456788887776544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00032 Score=72.87 Aligned_cols=158 Identities=10% Similarity=0.118 Sum_probs=89.9
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-c-cccceeEEe--cCCCEEEEEEecCC-C------------
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-A-VRVSNIAWA--KDGQALIYVVTDQN-K------------ 190 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~-~~~~~~~Ws--pDg~~l~y~~~~~~-~------------ 190 (726)
.+||+.+.|.|..+ +. .|+.+||+|++...+.. . +-.....|+ .|++.++.....+. .
T Consensus 87 ~~s~~~~~~~Yv~~--~~---~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 87 FLSPDDRALYYVKN--GR---SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp EE-TTSSEEEEEET--TT---EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred EEecCCCeEEEEEC--CC---eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 58999999999753 22 58999999998765433 2 233346775 45777766554321 1
Q ss_pred ----CCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC----ceEEEEEeCCCCCCCeEEeeccCC
Q 004866 191 ----RPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT----SSKVFLINAADPFSGLTLIWECEG 262 (726)
Q Consensus 191 ----~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~----~~~l~~~d~~~~~~~~~~l~~~~~ 262 (726)
....|+.+++.+++ ...++++.. +...+.+||..-.++.-+..+. ..+||+++.++ +..+++..+..
T Consensus 162 ~~a~p~~~i~~idl~tG~-~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--~~~~~v~~~~~ 236 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGE-RKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--SNVKKVHRRME 236 (386)
T ss_dssp HHC---EEEEEEETTT---EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---T
T ss_pred HhhCCCceEEEEECCCCc-eeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--CcceeeecCCC
Confidence 23579999999875 455666543 3344667777666655554443 35899999887 45666665554
Q ss_pred ceE---EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 263 LAH---CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 263 ~~~---~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
+.. -+|.+||..+++..-..+. ..+.|+.++++
T Consensus 237 ~e~~gHEfw~~DG~~i~y~~~~~~~----~~~~i~~~d~~ 272 (386)
T PF14583_consen 237 GESVGHEFWVPDGSTIWYDSYTPGG----QDFWIAGYDPD 272 (386)
T ss_dssp TEEEEEEEE-TTSS-EEEEEEETTT------EEEEEE-TT
T ss_pred CcccccccccCCCCEEEEEeecCCC----CceEEEeeCCC
Confidence 322 2567899998887653332 25778888886
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-05 Score=89.43 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=97.9
Q ss_pred EeeceeeCCCCCEEEEEEeC---CCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecC-------CCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYD---KDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQ-------NKRP 192 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~---~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~-------~~~~ 192 (726)
.++.+++||||+++||.... .++....||+.+. +|+..+++.......+.|+|||++|+|..... ....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 46788999999999998742 2234678999997 44445555444578899999999999885321 1123
Q ss_pred ceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEE---EeCCCCCC---CeEEeeccCCc--e
Q 004866 193 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFL---INAADPFS---GLTLIWECEGL--A 264 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~---~d~~~~~~---~~~~l~~~~~~--~ 264 (726)
.++|++++..+.... .. +.. ...+.|||||++|++... .+||+ ....++.. .++.+.....+ .
T Consensus 430 gql~~~~vd~ge~~~---~~-~g~-Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 430 GQLARTPVDASAVAS---RV-PGP-ISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ceEEEEeccCchhhh---cc-CCC-cCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 477777776654221 11 111 346889999999999873 36777 45444321 12224433322 2
Q ss_pred EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 265 HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 265 ~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
...|. .++.|++.++.. +..++++.++
T Consensus 501 ~l~W~-~~~~L~V~~~~~-------~~~v~~v~vD 527 (591)
T PRK13616 501 SLDWR-TGDSLVVGRSDP-------EHPVWYVNLD 527 (591)
T ss_pred cceEe-cCCEEEEEecCC-------CCceEEEecC
Confidence 23343 455577766532 2457888887
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.8e-06 Score=84.46 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=79.5
Q ss_pred EEEEE-cCCCCCCCCccEEEEEcCC-CCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcH
Q 004866 480 LTIIY-SPKYKKENQNPGLLHGHGA-YGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 554 (726)
Q Consensus 480 ~~l~~-p~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 554 (726)
.|++. |.+.++ +.-|+|||+||| |.....+..-. .+..++. ..++++.||.-... ...+...+..+
T Consensus 108 ~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~-------~~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSS-------DEHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-------ccCCCcCchHH
Confidence 46666 544333 335999999996 33333222111 1223334 56899999875431 01223445678
Q ss_pred HHHHHHHHHHH-HcCCCCCCcEEEEEecccHHHHHHHHHc--C---CCceeEEEEeCCccccc
Q 004866 555 KDFISCARFLI-EKEIVKEHKLAGWGYSAGGLLVAAAINC--C---PDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 555 ~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~l~~~~~~~--~---p~~f~a~v~~~p~~d~~ 611 (726)
.++++..++|+ ++|. ++|.++|-||||.|++.++.. . ...-+.+|+.+|.+++.
T Consensus 179 ~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 179 RQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred HHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 99999999999 5554 689999999999999887642 1 12357899999999887
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=84.49 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=80.1
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHC-CcEEEEEccCCCCCCCCccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR-GWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~g~~~~ 542 (726)
+.+.+.+.+.|+ ++..++..|. ....|+++..|||-.+. -+|......+..+ -..++++|.||||+.--+-.
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~----~t~gpil~l~HG~G~S~--LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e 121 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPS----ATEGPILLLLHGGGSSA--LSFAIFASELKSKIRCRCLALDLRGHGETKVENE 121 (343)
T ss_pred cccccccCCCcc-eEEEEEecCC----CCCccEEEEeecCcccc--hhHHHHHHHHHhhcceeEEEeeccccCccccCCh
Confidence 345566666665 5666665554 23469999999974433 5688888777763 67779999999997532211
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
.+ ........|+.+.++++... .+.+|.++||||||.++...+..
T Consensus 122 ~d---lS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 122 DD---LSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred hh---cCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 11 12234567888888877632 45679999999999999877754
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-05 Score=74.59 Aligned_cols=144 Identities=19% Similarity=0.093 Sum_probs=81.5
Q ss_pred eEEEEEEECCCC-cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHH-HHHHCCcE-EEEEccCC-------
Q 004866 464 SCEQYDVPSHDG-ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELK-SLLDRGWV-VAFADVRG------- 533 (726)
Q Consensus 464 ~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~-v~~~d~RG------- 533 (726)
.++...+.|.++ ..=.+++..|++..++.+||||.+.-|.-- . +....... .+.+.=.. .+...++.
T Consensus 8 ~~~~~~l~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~v--f-~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~ 84 (264)
T COG2819 8 HFRERDLKSANTGRKYRIFIATPKNYPKPGGYPVLYMLDGNAV--F-NALTEIMLRILADLPPPVIVGIGYETILVFDPN 84 (264)
T ss_pred cceeEeeeecCCCcEEEEEecCCCCCCCCCCCcEEEEecchhh--h-chHHHHhhhhhhcCCCceEEEeccccccccccc
Confidence 344455666655 455688899998877777998766655311 1 11222222 22222211 22222221
Q ss_pred --CCCC---CC-ccccc---c-cc-cCCCCcHH-HHHHHHHHHHHcCC-CCCCcEEEEEecccHHHHHHHHHcCCCceeE
Q 004866 534 --GGGG---GK-KWHHD---G-RR-TKKLNSIK-DFISCARFLIEKEI-VKEHKLAGWGYSAGGLLVAAAINCCPDLFRA 600 (726)
Q Consensus 534 --~g~~---g~-~~~~~---~-~~-~~~~~~~~-D~~~~~~~l~~~~~-~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a 600 (726)
...| .. ..... + .. ..+...+. .+..-+.=++++.+ ++++|.+|+|||+||++++-++..+|+.|.+
T Consensus 85 ~r~~DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~ 164 (264)
T COG2819 85 RRAYDYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGR 164 (264)
T ss_pred cccccCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhce
Confidence 1111 10 00000 0 00 11222333 33445565666544 6899999999999999999999999999999
Q ss_pred EEEeCCcccc
Q 004866 601 VVLEVPFLDA 610 (726)
Q Consensus 601 ~v~~~p~~d~ 610 (726)
.++.+|-+-|
T Consensus 165 y~~~SPSlWw 174 (264)
T COG2819 165 YGLISPSLWW 174 (264)
T ss_pred eeeecchhhh
Confidence 9999996533
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-05 Score=80.86 Aligned_cols=123 Identities=17% Similarity=0.115 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc-------ccCCC
Q 004866 479 PLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR-------RTKKL 551 (726)
Q Consensus 479 ~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~-------~~~~~ 551 (726)
+..++.|+.. .....|++|+..|.-..............|++.|++-+++..+-.|..-..-..... ...+.
T Consensus 78 ~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~ 156 (348)
T PF09752_consen 78 RFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGR 156 (348)
T ss_pred EEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHh
Confidence 3446677754 234579999998853332211122335678888999999987766542111110000 01123
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
..+.+....+.||.++|+ .++|+.|.||||+|+..++...|....++-+.+
T Consensus 157 ~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls 207 (348)
T PF09752_consen 157 ATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLS 207 (348)
T ss_pred HHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeec
Confidence 456677788999999977 599999999999999999998888654444433
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=90.75 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=76.0
Q ss_pred CccEEEEEcCCCCCCCCccchH-HHHHHHH--CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRS-ELKSLLD--RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~--~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
..|++|++||.........|.. ....|.. ..+.|+++|++|+|... +..+.. .-...-+++.+.+++|.++..
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~~--~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSAA--YTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Cccccc--cHHHHHHHHHHHHHHHHHhhC
Confidence 4589999999655332234554 3445543 36999999999987532 111110 111122456666777765433
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
.+.+++.++|||+||.+++.++.+.|+++..+++..|.
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 57799999999999999999999999999999988775
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=95.47 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc----------c---------ccCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG----------R---------RTKKLN 552 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~----------~---------~~~~~~ 552 (726)
...|+||++||..+.. ..|......|+++||.|+.+|+||||.+...-...+ . ++.-..
T Consensus 447 ~g~P~VVllHG~~g~~--~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ 524 (792)
T TIGR03502 447 DGWPVVIYQHGITGAK--ENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQ 524 (792)
T ss_pred CCCcEEEEeCCCCCCH--HHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHH
Confidence 3468999999976643 457778888999999999999999997633200000 0 012233
Q ss_pred cHHHHHHHHHHHH------Hc----CCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 553 SIKDFISCARFLI------EK----EIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 553 ~~~D~~~~~~~l~------~~----~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
.+.|+......|. ++ +..+..++.++||||||+++..++..
T Consensus 525 ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 525 SILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 4577776666665 11 12457899999999999999988874
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=86.18 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=63.1
Q ss_pred hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHH----HHHHHHHcCCCCCCcEEEEEecccHHHHH
Q 004866 513 RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS----CARFLIEKEIVKEHKLAGWGYSAGGLLVA 588 (726)
Q Consensus 513 ~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~----~~~~l~~~~~~d~~ri~i~G~S~GG~l~~ 588 (726)
...+++|+++|+.|++++.|.-+...+ ...++|++. |++.+.+ .+...+|-++|+|+||.+++
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r-----------~~~ldDYv~~i~~Ald~V~~--~tG~~~vnl~GyC~GGtl~a 303 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHR-----------EWGLSTYVDALKEAVDAVRA--ITGSRDLNLLGACAGGLTCA 303 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhc-----------CCCHHHHHHHHHHHHHHHHH--hcCCCCeeEEEECcchHHHH
Confidence 456899999999999999998653211 124555554 4444443 35668999999999999988
Q ss_pred H----HHHcCCC-ceeEEEEeCCccccc
Q 004866 589 A----AINCCPD-LFRAVVLEVPFLDAT 611 (726)
Q Consensus 589 ~----~~~~~p~-~f~a~v~~~p~~d~~ 611 (726)
. ++..+++ +++.+++.+..+|..
T Consensus 304 ~~~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 304 ALVGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred HHHHHHHhcCCCCceeeEEeeecccccC
Confidence 6 5667785 799999888877754
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.4e-05 Score=85.15 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=76.8
Q ss_pred eeceeeCCCCCEEEEEEeCC-------CCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 124 EELSEVSPDHKFLAYTMYDK-------DNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~-------g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
+..++|||||++|+|..+.. .+...+|+++++++|+... .....+..+.|||||++|+|+.. .+||
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~------g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG------GKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC------CEEE
Confidence 67899999999998886531 1123578999998887655 33556899999999999999861 3777
Q ss_pred E---EEcCCCCceeE-----EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 197 C---SIIGSTDEDAL-----LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 197 ~---~~l~t~~~~~l-----v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+ .+.+.+. ..+ +...... -..++.|..|++ |++... .....+|.+++++.
T Consensus 472 Va~Vvr~~~G~-~~l~~~~~l~~~l~~-~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~ 529 (591)
T PRK13616 472 LAVVEQTEDGQ-YALTNPREVGPGLGD-TAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGS 529 (591)
T ss_pred EEEEEeCCCCc-eeecccEEeecccCC-ccccceEecCCE-EEEEec-CCCCceEEEecCCc
Confidence 7 3433332 222 2111111 124678999998 444433 44567899999874
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=84.08 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHHcCCCCCC
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIVKEH 573 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ 573 (726)
+.+|++|| +|+.. ..|......|++ ...|.++|..|.|.+.+.-... .....-.-+++.++ |-.+.+. .
T Consensus 91 ~plVliHG-yGAg~-g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~----d~~~~e~~fvesiE~WR~~~~L---~ 160 (365)
T KOG4409|consen 91 TPLVLIHG-YGAGL-GLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSI----DPTTAEKEFVESIEQWRKKMGL---E 160 (365)
T ss_pred CcEEEEec-cchhH-HHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCC----CcccchHHHHHHHHHHHHHcCC---c
Confidence 34556665 22221 235555666776 8999999999999765432211 12223345666665 4455554 5
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
++-|+|||+|||++...|.++|++++.+|+..|.
T Consensus 161 KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~ 194 (365)
T KOG4409|consen 161 KMILVGHSFGGYLAAKYALKYPERVEKLILVSPW 194 (365)
T ss_pred ceeEeeccchHHHHHHHHHhChHhhceEEEeccc
Confidence 9999999999999999999999999999998875
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=74.73 Aligned_cols=161 Identities=15% Similarity=0.176 Sum_probs=90.2
Q ss_pred EEEEcCCCCCCCCccchHH-HHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcE
Q 004866 497 LLHGHGAYGELLDKRWRSE-LKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKL 575 (726)
Q Consensus 497 vl~~hGg~~~~~~~~~~~~-~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 575 (726)
|+.+||-.++.. ..|.+. .+.|.+. +.|-.++.- .-..++.+..++..+.. +| +.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~------------------~P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWD------------------NPDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--T------------------S--HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccC------------------CCCHHHHHHHHHHHHhh--cC-CCe
Confidence 345554322222 345544 4555555 777766641 12456666666555542 33 459
Q ss_pred EEEEecccHHHHHHHH-HcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCC
Q 004866 576 AGWGYSAGGLLVAAAI-NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDV 654 (726)
Q Consensus 576 ~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~ 654 (726)
.++|||.|+.+++..+ .+....++++++.+|+..-... ... .....+. +.... . .
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~---~~~----~~~~~f~---------------~~p~~-~-l 113 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE---PFP----PELDGFT---------------PLPRD-P-L 113 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH---CCT----CGGCCCT---------------TSHCC-H-H
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc---chh----hhccccc---------------cCccc-c-c
Confidence 9999999999999999 7778899999999998431000 000 0111111 11111 1 2
Q ss_pred CCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc-hhhHHHH
Q 004866 655 LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-RYLQCKE 712 (726)
Q Consensus 655 ~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~ 712 (726)
..|.++|.+..|+.||+..+.+++++|.. ..+. .+++||+... ....+.+
T Consensus 114 ~~~~~viaS~nDp~vp~~~a~~~A~~l~a-------~~~~-~~~~GHf~~~~G~~~~p~ 164 (171)
T PF06821_consen 114 PFPSIVIASDNDPYVPFERAQRLAQRLGA-------ELII-LGGGGHFNAASGFGPWPE 164 (171)
T ss_dssp HCCEEEEEETTBSSS-HHHHHHHHHHHT--------EEEE-ETS-TTSSGGGTHSS-HH
T ss_pred CCCeEEEEcCCCCccCHHHHHHHHHHcCC-------CeEE-CCCCCCcccccCCCchHH
Confidence 34668888888999999999999999964 2333 6999997654 4444443
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=76.92 Aligned_cols=103 Identities=11% Similarity=0.048 Sum_probs=68.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.+..++|||+|+++|.+.... ...+.++|++ ++.+..........+.|||+|+.|+..... +....|..+|+.+
T Consensus 61 ~I~~~~WsP~g~~favi~g~~---~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~--n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSM---PAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG--NLNGDLEFWDVRK 134 (194)
T ss_pred ceEEEEECcCCCEEEEEEccC---CcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc--CCCcEEEEEECCC
Confidence 377889999999998875321 2268899997 433322223344578999999999987543 2234688888874
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEc
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTF 235 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~ 235 (726)
.+ .+... .......+.|||||++|+..+.
T Consensus 135 ~~---~i~~~-~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 135 KK---KISTF-EHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CE---Eeecc-ccCcEEEEEEcCCCCEEEEEEe
Confidence 32 22221 1222457899999999987654
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-06 Score=81.37 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=96.5
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
.-++.++++.||-+|...++-......+...-+||..-|..|. |. .....=++.||.|+-.|.+|.+|+-.-
T Consensus 213 NG~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGF-----YEvG~m~tP~~lgYsvLGwNhPGFagSTG~-- 285 (517)
T KOG1553|consen 213 NGQRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGF-----YEVGVMNTPAQLGYSVLGWNHPGFAGSTGL-- 285 (517)
T ss_pred CCeEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccc-----eEeeeecChHHhCceeeccCCCCccccCCC--
Confidence 3567889999999998766654432223334678888774331 10 011223567999999999998875221
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 612 (726)
....++..-..+++++.+..--..++.|.++|||-||+.++++|..+|+. +|+|+.+.|-|++-
T Consensus 286 -----P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-kavvLDAtFDDllp 349 (517)
T KOG1553|consen 286 -----PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-KAVVLDATFDDLLP 349 (517)
T ss_pred -----CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-eEEEeecchhhhhh
Confidence 12234556666778888876445678999999999999999999999985 99999998877653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00093 Score=69.85 Aligned_cols=244 Identities=13% Similarity=0.079 Sum_probs=121.2
Q ss_pred eeCCCCCEEEEEEe-----CCCCcEEEEEEEECCCCceecccc-cc--------ccceeEEecCCCEEEEEEecCCCCCc
Q 004866 128 EVSPDHKFLAYTMY-----DKDNDYFTLSVRNLNSGALCSKPQ-AV--------RVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 128 ~~SPDG~~la~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~-~~--------~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
.+||||+.|..... ..|.+.-.|-|+|++|++.+.... .. ....++.||||++||+...+. ..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---~~ 128 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---SP 128 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC---CC
Confidence 49999999866543 123333469999999998775322 11 123689999999998763331 24
Q ss_pred eEEEEEcCCCC-ce-------eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE
Q 004866 194 QIYCSIIGSTD-ED-------ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH 265 (726)
Q Consensus 194 ~l~~~~l~t~~-~~-------~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 265 (726)
.|-++|+.+.+ .. ..+|...+..| ...+.||+.+.+.....+....--...-.+ .-.++..+.
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~---~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~--~~~~v~~rP---- 199 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPDCYHIFPTANDTF---FMHCRDGSLAKVGYGTKGNPKIKPTEVFHP--EDEYLINHP---- 199 (352)
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEecCCcc---EEEeecCceEEEEecCCCceEEeeeeeecC--CccccccCC----
Confidence 67788887664 11 11222122222 123567777666555443311100000000 000111111
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCC---CCCceEEeecCC--C-----ceEEEEeeeCCEEEEEEEe
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP---SRTWESVFIDDQ--G-----LVVEDVDFCKTHMALILRE 335 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~v~~~~~--~-----~~l~~~~~~~~~lv~~~~~ 335 (726)
.+.+.++..+|+++++ .|+.+|+. ... ...|..+..... + ...-.++..++++|+....
T Consensus 200 -~~~~~dg~~~~vs~eG---------~V~~id~~-~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 200 -AYSNKSGRLVWPTYTG---------KIFQIDLS-SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred -ceEcCCCcEEEEecCC---------eEEEEecC-CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1244344666666652 26666643 111 122332211110 1 1122344446788875432
Q ss_pred -------CCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCC
Q 004866 336 -------GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYG 408 (726)
Q Consensus 336 -------~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~ 408 (726)
++..+++++|..+.+ .+ ..+++.....++ ..+.|++-.+++.+. ....+..+|.+++
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~k-----vi-----~~i~vG~~~~~i----avS~Dgkp~lyvtn~--~s~~VsViD~~t~ 332 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGK-----RL-----RKIELGHEIDSI----NVSQDAKPLLYALST--GDKTLYIFDAETG 332 (352)
T ss_pred CccccccCCCCEEEEEECCCCe-----EE-----EEEeCCCceeeE----EECCCCCeEEEEeCC--CCCcEEEEECcCC
Confidence 233589999987543 11 223333333233 245677734444332 2456889998887
Q ss_pred eE
Q 004866 409 KW 410 (726)
Q Consensus 409 ~~ 410 (726)
+.
T Consensus 333 k~ 334 (352)
T TIGR02658 333 KE 334 (352)
T ss_pred eE
Confidence 54
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0003 Score=72.93 Aligned_cols=194 Identities=10% Similarity=-0.002 Sum_probs=105.5
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
.+.|+|||+.++.+....+ .|+++|+.+++.+.... ......+.|+|||+.|++...+ ...++.++..+..
T Consensus 77 ~~~~~~~g~~l~~~~~~~~----~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~----~~~~~~~d~~~~~ 148 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDN----LVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET----TNMAHFIDTKTYE 148 (300)
T ss_pred EEEECCCCCEEEEEcCCCC----eEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC----CCeEEEEeCCCCe
Confidence 4579999998865532222 59999999876543322 2234678999999988876432 1245566776543
Q ss_pred ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-----C---ceEEeeeecCCEEE
Q 004866 205 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-----G---LAHCIVEHHEGFLY 276 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-----~---~~~~~~~~~g~~l~ 276 (726)
....+.. .... ..+.+++||++|++.... ...++++|+.++. ..+.+.... . .....++++|+.+|
T Consensus 149 ~~~~~~~-~~~~--~~~~~s~dg~~l~~~~~~--~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 149 IVDNVLV-DQRP--RFAEFTADGKELWVSSEI--GGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred EEEEEEc-CCCc--cEEEECCCCCEEEEEcCC--CCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEE
Confidence 1111111 1111 246789999998876432 2468888988742 122222111 0 11234567888766
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE--EeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
+..... ..+..++.. + .+....+... ..+.. +...+++|++....+| .|.++|+.++
T Consensus 223 ~~~~~~--------~~i~v~d~~-~---~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~~ 281 (300)
T TIGR03866 223 VALGPA--------NRVAVVDAK-T---YEVLDYLLVG--QRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAAL 281 (300)
T ss_pred EEcCCC--------CeEEEEECC-C---CcEEEEEEeC--CCcceEEECCCCCEEEEEcCCCC--eEEEEECCCC
Confidence 644322 235566654 2 1212222221 12333 4444566665543344 5788887653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.2e-05 Score=72.59 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=112.7
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccC------CCCCCCCccccccccc-CCCCc---HHHHHHHHHHH
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVR------GGGGGGKKWHHDGRRT-KKLNS---IKDFISCARFL 564 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~R------G~g~~g~~~~~~~~~~-~~~~~---~~D~~~~~~~l 564 (726)
-+||++||--... ..|......|--+..-.++|..+ -.|..+..|.....-. ....+ +.-..+.+..|
T Consensus 4 atIi~LHglGDsg--~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~L 81 (206)
T KOG2112|consen 4 ATIIFLHGLGDSG--SGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANL 81 (206)
T ss_pred EEEEEEecCCCCC--ccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHH
Confidence 4799999843322 34444433344456666776432 2344455666543222 11112 22223344455
Q ss_pred HHc---CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHH
Q 004866 565 IEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 641 (726)
Q Consensus 565 ~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 641 (726)
+++ .-++++||+|.|.|+||.+++.++..+|......+..+++..-.. ..+. +.+.
T Consensus 82 i~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~-----------~~~~--~~~~-------- 140 (206)
T KOG2112|consen 82 IDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS-----------IGLP--GWLP-------- 140 (206)
T ss_pred HHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch-----------hhcc--CCcc--------
Confidence 543 346889999999999999999999988654444444444332110 0000 1110
Q ss_pred HhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHH
Q 004866 642 RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAF 719 (726)
Q Consensus 642 ~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~f 719 (726)
.. ...|.++.||..|+.||..-..+..+.|+..++ + +.+ |++-+|. ..-+++.+...|
T Consensus 141 --------~~--~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~----~-~~f~~y~g~~h~-----~~~~e~~~~~~~ 200 (206)
T KOG2112|consen 141 --------GV--NYTPILLCHGTADPLVPFRFGEKSAQFLKSLGV----R-VTFKPYPGLGHS-----TSPQELDDLKSW 200 (206)
T ss_pred --------cc--CcchhheecccCCceeehHHHHHHHHHHHHcCC----c-eeeeecCCcccc-----ccHHHHHHHHHH
Confidence 00 146888999999999999999999999999883 3 555 8999994 344566667788
Q ss_pred HHH
Q 004866 720 LIK 722 (726)
Q Consensus 720 l~~ 722 (726)
+.+
T Consensus 201 ~~~ 203 (206)
T KOG2112|consen 201 IKT 203 (206)
T ss_pred HHH
Confidence 776
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=74.87 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=84.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
+=.+++||+|++||-++.. . ..-||....++.-.+..+. ...+..+.||||.++|+-...++ .+++.|+
T Consensus 227 VWfl~FS~nGkyLAsaSkD-~--Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~lwDv 298 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKD-S--TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLSLWDV 298 (519)
T ss_pred EEEEEEcCCCeeEeeccCC-c--eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH-----heeeccC
Confidence 3445799999999987532 2 2234544444331111111 33567789999999997764432 3888888
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCC-CCeEEeeccCCceEEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPF-SGLTLIWECEGLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~~~~~~~~g~~l~~~t 279 (726)
.++.. +..|...-+--..+.+|-|||..++..+.+ ..++.+|+++.. ..++-+.. .......+++||+.++.++
T Consensus 299 ~tgd~-~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d---r~i~~wdlDgn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 299 DTGDL-RHLYPSGLGFSVSSCAWCPDGFRFVTGSPD---RTIIMWDLDGNILGNWEGVRD-PKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred Ccchh-hhhcccCcCCCcceeEEccCCceeEecCCC---CcEEEecCCcchhhccccccc-ceeEEEEEcCCCcEEEEEe
Confidence 88752 334443311122468899999997755443 568888887621 11111100 0112234568999988887
Q ss_pred cC
Q 004866 280 DA 281 (726)
Q Consensus 280 ~~ 281 (726)
..
T Consensus 374 ~d 375 (519)
T KOG0293|consen 374 VD 375 (519)
T ss_pred cc
Confidence 53
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=78.58 Aligned_cols=211 Identities=12% Similarity=0.079 Sum_probs=114.7
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHC-CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
.|+.+-|.-|+. ...|.+....|-.. -+.++..|.||.|.+-..-+ ...-..-..|..+|++-+.+. +-.+
T Consensus 44 ~iLlipGalGs~-~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~R----kf~~~ff~~Da~~avdLM~aL---k~~~ 115 (277)
T KOG2984|consen 44 YILLIPGALGSY-KTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPER----KFEVQFFMKDAEYAVDLMEAL---KLEP 115 (277)
T ss_pred eeEecccccccc-cccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcc----cchHHHHHHhHHHHHHHHHHh---CCCC
Confidence 566667765543 34577776655542 49999999999886421100 000112246667777766554 4579
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCc--ccccccccCCCCCCChhhh--------cccCCCCCh----hHHHH
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF--LDATNTLLYPILPLIAADY--------EEFGYPGDI----DDFHA 640 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~--~d~~~~~~~~~~~~~~~~~--------~~~g~~~~~----~~~~~ 640 (726)
..|+|+|-||..++.+|+++++.+...|....- ++-...|....+.-...|- .-||.-.-+ +..+.
T Consensus 116 fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~ 195 (277)
T KOG2984|consen 116 FSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDV 195 (277)
T ss_pred eeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999876655544332 2222222222211111110 112211000 01111
Q ss_pred HHhcCc------ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHH
Q 004866 641 IRNYSP------YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESA 714 (726)
Q Consensus 641 ~~~~sp------~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 714 (726)
..++-- ...+-.++++|+|++||+.|+.|+-.+..-+-..+..+. +.+.++++|.+--++.. +-..
T Consensus 196 v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~-------~~~~peGkHn~hLrya~-eFnk 267 (277)
T KOG2984|consen 196 VDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAK-------VEIHPEGKHNFHLRYAK-EFNK 267 (277)
T ss_pred HHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccce-------EEEccCCCcceeeechH-HHHH
Confidence 122111 112223489999999999999999887654433333322 23368899975432211 1122
Q ss_pred HHHHHHHH
Q 004866 715 LETAFLIK 722 (726)
Q Consensus 715 ~~~~fl~~ 722 (726)
.+.+||.+
T Consensus 268 lv~dFl~~ 275 (277)
T KOG2984|consen 268 LVLDFLKS 275 (277)
T ss_pred HHHHHHhc
Confidence 35677764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-05 Score=77.34 Aligned_cols=141 Identities=8% Similarity=0.138 Sum_probs=96.6
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCcee
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA 207 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~ 207 (726)
++-|++.++... .+|+ .|-|+|.++|+...... .+++..+.-+|||+.++.. +...+||.+++.++...
T Consensus 367 ~~~~~e~~vigt-~dgD---~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-----Ndr~el~vididngnv~- 436 (668)
T COG4946 367 IQVDPEGDVIGT-NDGD---KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-----NDRFELWVIDIDNGNVR- 436 (668)
T ss_pred EccCCcceEEec-cCCc---eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-----cCceEEEEEEecCCCee-
Confidence 444455444432 2332 48899999998665433 5677889999999988775 23458999999988532
Q ss_pred EEeeecCCceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCCEEEEEecCc
Q 004866 208 LLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 208 lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~~ 282 (726)
++ +.......+++.|||+++||++.-..+- +..|.++|..+ ++.-.++... .+..+.+++||+.|||++++.
T Consensus 437 ~i-dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~--~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 437 LI-DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG--GKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred Ee-cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC--CeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 22 2333344568899999999998765442 36788899887 4444444433 355667889999999999864
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00029 Score=62.58 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=81.4
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc-cccCCCCcH-HHHHHHHHHHHHcCCCCC
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG-RRTKKLNSI-KDFISCARFLIEKEIVKE 572 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~-~~~~~~~~~-~D~~~~~~~l~~~~~~d~ 572 (726)
-+||..||.-.....+........|+.+||.|+.+++.---.. .... +...+..+. ...+.++..|.+. .+.
T Consensus 15 ~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~R----rtg~rkPp~~~~t~~~~~~~~~aql~~~--l~~ 88 (213)
T COG3571 15 VTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAAR----RTGRRKPPPGSGTLNPEYIVAIAQLRAG--LAE 88 (213)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhc----cccCCCCcCccccCCHHHHHHHHHHHhc--ccC
Confidence 4677889864443333344556789999999999997522110 0000 011111222 3344555555543 355
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEe-CCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE-VPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ 651 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~-~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~ 651 (726)
.++.|.|+||||-++.+++..----+.+.+|. +||.- -|.|+. . + ..++.
T Consensus 89 gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp-------------------pGKPe~---~---R----t~HL~ 139 (213)
T COG3571 89 GPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP-------------------PGKPEQ---L---R----TEHLT 139 (213)
T ss_pred CceeeccccccchHHHHHHHhhcCCcceEEEecCccCC-------------------CCCccc---c---h----hhhcc
Confidence 78999999999998887765422123333321 22211 134431 1 1 23455
Q ss_pred cCCCCCeEEEEecCCCCcChHHH
Q 004866 652 KDVLYPAVLVTSSFNTRFGVWEA 674 (726)
Q Consensus 652 ~~~~~P~lli~g~~D~~V~~~~~ 674 (726)
. +++|+||.||..|..=.-.+.
T Consensus 140 g-l~tPtli~qGtrD~fGtr~~V 161 (213)
T COG3571 140 G-LKTPTLITQGTRDEFGTRDEV 161 (213)
T ss_pred C-CCCCeEEeecccccccCHHHH
Confidence 5 899999999999965444443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0024 Score=67.89 Aligned_cols=261 Identities=15% Similarity=0.143 Sum_probs=129.3
Q ss_pred eceeeCCCCCEEEEEEeCC--CCcEEEEEEEECCCCceecccc-c---cccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDK--DNDYFTLSVRNLNSGALCSKPQ-A---VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~--g~e~~~l~v~dl~tg~~~~~~~-~---~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
+.+.+|||+++| |+.+.. .......+-++-++|....+.. . .....++.+||++.||...+. ...|..+
T Consensus 40 s~l~~~~~~~~L-Y~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~----~g~v~v~ 114 (345)
T PF10282_consen 40 SWLAVSPDGRRL-YVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG----GGSVSVF 114 (345)
T ss_dssp CCEEE-TTSSEE-EEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT----TTEEEEE
T ss_pred ceEEEEeCCCEE-EEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc----CCeEEEE
Confidence 345789999977 655554 2334445555665566554322 1 122457889999999887543 2367777
Q ss_pred EcCCCC-ceeE--Ee--e--ec-----CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE---e--eccC
Q 004866 199 IIGSTD-EDAL--LL--E--ES-----NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL---I--WECE 261 (726)
Q Consensus 199 ~l~t~~-~~~l--v~--~--~~-----d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~---l--~~~~ 261 (726)
++.... .... +. . .+ .....-.+.++|||+++++.... ...|++++++...+++.. + ....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCC
Confidence 776532 1111 11 1 01 11222356789999999876543 346777777654333322 1 1222
Q ss_pred CceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE---E--eecCC--CceEEEEeee--CCEEEEE
Q 004866 262 GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES---V--FIDDQ--GLVVEDVDFC--KTHMALI 332 (726)
Q Consensus 262 ~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---v--~~~~~--~~~l~~~~~~--~~~lv~~ 332 (726)
+.....++++|+.+|++..... ...++.++.. ...++. + ++... .....++.+. +++||+.
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~------~v~v~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSN------TVSVFDYDPS----DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTT------EEEEEEEETT----TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCC------cEEEEeeccc----CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 2345567788888888765432 2334444421 122221 1 11111 1134445544 5667766
Q ss_pred EEeCCeeEEEEEecCCCCCCcceeecccccccccCCCc-eeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 333 LREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKY-VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 333 ~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
-+. ...|.+++++...++ +... ..++.... -. ++.++++++.+++.-.. ..--.+|.+|.++|.+.
T Consensus 263 nr~--~~sI~vf~~d~~~g~----l~~~--~~~~~~G~~Pr----~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 263 NRG--SNSISVFDLDPATGT----LTLV--QTVPTGGKFPR----HFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ECT--TTEEEEEEECTTTTT----EEEE--EEEEESSSSEE----EEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEEE
T ss_pred ecc--CCEEEEEEEecCCCc----eEEE--EEEeCCCCCcc----EEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCcEE
Confidence 554 344555555322121 1100 11111000 01 12235677766554433 33357778888899887
Q ss_pred EEEe
Q 004866 412 IIQQ 415 (726)
Q Consensus 412 ~~~~ 415 (726)
....
T Consensus 330 ~~~~ 333 (345)
T PF10282_consen 330 PVGS 333 (345)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=63.99 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=57.9
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcH
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 554 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 554 (726)
|.+|.+..+.|++. +..+|+++||-...+ ..|...++.|+++||.|+..|.||+|.+.. . ......+
T Consensus 1 G~~L~~~~w~p~~~----~k~~v~i~HG~~eh~--~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g------~-rg~~~~~ 67 (79)
T PF12146_consen 1 GTKLFYRRWKPENP----PKAVVVIVHGFGEHS--GRYAHLAEFLAEQGYAVFAYDHRGHGRSEG------K-RGHIDSF 67 (79)
T ss_pred CcEEEEEEecCCCC----CCEEEEEeCCcHHHH--HHHHHHHHHHHhCCCEEEEECCCcCCCCCC------c-ccccCCH
Confidence 66788877777642 467999999864433 357888999999999999999999998742 1 1224678
Q ss_pred HHHHHHHHHHH
Q 004866 555 KDFISCARFLI 565 (726)
Q Consensus 555 ~D~~~~~~~l~ 565 (726)
+++++.+..++
T Consensus 68 ~~~v~D~~~~~ 78 (79)
T PF12146_consen 68 DDYVDDLHQFI 78 (79)
T ss_pred HHHHHHHHHHh
Confidence 88877776654
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-05 Score=78.80 Aligned_cols=123 Identities=24% Similarity=0.348 Sum_probs=83.8
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc-----cchHHHHHHHH-CCcEEEEEccCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-----RWRSELKSLLD-RGWVVAFADVRG 533 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~-----~~~~~~~~l~~-~G~~v~~~d~RG 533 (726)
......+++.+.. |+..|.+..+.-++.+ .. -.||+.-|. +..+.. .....++.++. .|..|+..||||
T Consensus 107 ~~~~~~kRv~Iq~-D~~~IDt~~I~~~~a~-~~--RWiL~s~GN-g~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpG 181 (365)
T PF05677_consen 107 DEVSSVKRVPIQY-DGVKIDTMAIHQPEAK-PQ--RWILVSNGN-GECYENRAMLDYKDDWIQRFAKELGANVLVFNYPG 181 (365)
T ss_pred ccccceeeEEEee-CCEEEEEEEeeCCCCC-CC--cEEEEEcCC-hHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCc
Confidence 3445677788876 9999998776644432 23 356665542 222211 12234555555 699999999999
Q ss_pred CCCCCCcccccccccCCCCcHHHHHHHHHHHHHcC-CCCCCcEEEEEecccHHHHHHHHHcC
Q 004866 534 GGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE-IVKEHKLAGWGYSAGGLLVAAAINCC 594 (726)
Q Consensus 534 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~l~~~~~~~~ 594 (726)
-|.+ .|... ...-+.|..++++||.++. -+.+++|.++|+|.||.+++.++..+
T Consensus 182 Vg~S------~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 182 VGSS------TGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred cccC------CCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 8865 23332 2456788999999999754 46889999999999999988876653
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=83.64 Aligned_cols=144 Identities=19% Similarity=0.180 Sum_probs=103.9
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc----cchHHHHHHHHCCcEEEEEccCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK----RWRSELKSLLDRGWVVAFADVRGGG 535 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~----~~~~~~~~l~~~G~~v~~~d~RG~g 535 (726)
...|.+|...+.+.||..+.. .-.|... ++.|+|+..||-..++... .-....-.|+++||-|-+-|.|| .
T Consensus 43 ~~gy~~E~h~V~T~DgYiL~l-hRIp~~~---~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n 117 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGYILTL-HRIPRGK---KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-N 117 (403)
T ss_pred HcCCceEEEEEEccCCeEEEE-eeecCCC---CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-c
Confidence 457889999999999984433 3344432 6789999999965543211 01233456788999999999999 6
Q ss_pred CCCCcccccccc--------cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEe
Q 004866 536 GGGKKWHHDGRR--------TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLE 604 (726)
Q Consensus 536 ~~g~~~~~~~~~--------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~ 604 (726)
.|++.-...... .+..-...|+-|.++++.+. +..+++..+|||.|+.....++...|+ .++.+++.
T Consensus 118 ~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aL 195 (403)
T KOG2624|consen 118 TYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIAL 195 (403)
T ss_pred ccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheeeee
Confidence 666553322221 12234678999999999864 567899999999999998888888776 68889999
Q ss_pred CCcccc
Q 004866 605 VPFLDA 610 (726)
Q Consensus 605 ~p~~d~ 610 (726)
+|++-+
T Consensus 196 AP~~~~ 201 (403)
T KOG2624|consen 196 APAAFP 201 (403)
T ss_pred cchhhh
Confidence 998733
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0008 Score=71.07 Aligned_cols=204 Identities=16% Similarity=0.117 Sum_probs=124.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc--cccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
..-++||-|++++|-..- + .|.|++..+-..+... ...++.+++|||-+.-|+|-.-..++.+.++-++.+.
T Consensus 308 WP~frWS~DdKy~Arm~~---~---sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTG---N---SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred cceEEeccCCceeEEecc---c---eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecC
Confidence 345799999999998742 1 3778887664433321 1457789999999999999765555667778788877
Q ss_pred CCCc--eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCc---------eEEEEEeCCCCCCCeEEeeccCCceEEeeee
Q 004866 202 STDE--DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTS---------SKVFLINAADPFSGLTLIWECEGLAHCIVEH 270 (726)
Q Consensus 202 t~~~--~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~---------~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 270 (726)
+.+. ..-++...| +.+.|-++|+||++...+.+. -+|+.++-.. -.+..+.-...-....|+|
T Consensus 382 s~~~iRt~nlfnVsD----ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd--Ipve~velke~vi~FaWEP 455 (698)
T KOG2314|consen 382 SKREIRTKNLFNVSD----CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD--IPVEVVELKESVIAFAWEP 455 (698)
T ss_pred ccceeeeccceeeec----cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC--CCceeeecchheeeeeecc
Confidence 6641 122343333 346789999999998876542 2455554333 2222332233334567889
Q ss_pred cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCC-CceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 271 HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQ-GLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 271 ~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
.|+.|.+++-.... .+...|.+... ..+|.-|..-+. ...--.+++.+..+++.........|..+|.+
T Consensus 456 ~gdkF~vi~g~~~k----~tvsfY~~e~~----~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 456 HGDKFAVISGNTVK----NTVSFYAVETN----IKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred CCCeEEEEEccccc----cceeEEEeecC----CCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 99999988854321 24555555422 234443221111 11122455566788877766555677778765
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=74.89 Aligned_cols=113 Identities=22% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCccEEEEEcCCCCCCCCcc-c----hHHHHHHHH-------CCcEEEEEccCCCC-C-CCCc-ccccccc---cCCCCc
Q 004866 492 NQNPGLLHGHGAYGELLDKR-W----RSELKSLLD-------RGWVVAFADVRGGG-G-GGKK-WHHDGRR---TKKLNS 553 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~-~----~~~~~~l~~-------~G~~v~~~d~RG~g-~-~g~~-~~~~~~~---~~~~~~ 553 (726)
.+..+||..|+-.+.+.... + .-.++.|+. .-|.|++.|+-|+. + .|.. ....++. .....+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 34578999998544221111 0 012333333 34999999999876 2 2221 1111111 123367
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEE-EEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 554 IKDFISCARFLIEKEIVKEHKLA-GWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
+.|.+.+-+.|+++--+ ++++ |+|+||||+.++..+..+|++...+|..+.
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 89999998888765333 4555 999999999999999999998877776654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0023 Score=74.07 Aligned_cols=247 Identities=6% Similarity=-0.106 Sum_probs=138.4
Q ss_pred CeeECCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCC
Q 004866 54 PLRWGPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDH 133 (726)
Q Consensus 54 p~~~g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG 133 (726)
++++|.++.|.....|.+...++.+.... + ++|.++ +... . ..+.|+|||
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~t--------------------g--~~l~~~--i~~~-----~-~~~~w~~D~ 183 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLET--------------------G--NWYPEL--LDNV-----E-PSFVWANDS 183 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCC--------------------C--CCCCcc--ccCc-----c-eEEEEeeCC
Confidence 36788899999998898888888876521 1 111111 1111 1 236899999
Q ss_pred CEEEEEEeCCC-CcEEEEEEEECCCC--ceecccc--ccccceeEEec-CCCEEEEEEecCCCCCceEEEEEcC--CCCc
Q 004866 134 KFLAYTMYDKD-NDYFTLSVRNLNSG--ALCSKPQ--AVRVSNIAWAK-DGQALIYVVTDQNKRPYQIYCSIIG--STDE 205 (726)
Q Consensus 134 ~~la~~~~~~g-~e~~~l~v~dl~tg--~~~~~~~--~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l~~~~l~--t~~~ 205 (726)
+.|.|+....+ ....+||..++.|+ +...+.. ...+.-..|.+ |++++++..... ....+++++.. ++..
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~ 261 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEP 261 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCc
Confidence 99999877543 24578999999998 3333322 11222234555 999888654433 23467776643 2222
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCC-CceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEecCcc
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFST-TSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTDAAK 283 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t~~~~ 283 (726)
..++..+.+..+.+ . ..+..+++.++.+ ....|..+++.+. +.++.+.+...+ ..-.+...++.|++..+..+
T Consensus 262 ~~~~~~~~~~~~~~--~--~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g 336 (686)
T PRK10115 262 FVFLPRRKDHEYSL--D--HYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLFTDWLVVEERQRG 336 (686)
T ss_pred eEEEECCCCCEEEE--E--eCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC
Confidence 22232333333322 1 2346677777654 4577888888743 456777766432 22234445778888877654
Q ss_pred cCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEe----eeCCEEEEEEEeCCe-eEEEEEecCC
Q 004866 284 EGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVD----FCKTHMALILREGRT-YRLCSVSLPL 348 (726)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~----~~~~~lv~~~~~~g~-~~l~~~~l~~ 348 (726)
..+|+.++.. . .....+....+.. ...+. ...+.+++....-.. ..++.+|+.+
T Consensus 337 ------~~~l~~~~~~-~---~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 337 ------LTSLRQINRK-T---REVIGIAFDDPAY-VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred ------EEEEEEEcCC-C---CceEEecCCCCce-EeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 3567777764 1 2333332122211 22111 223456666555444 4788888764
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.2e-05 Score=77.12 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=125.8
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHH
Q 004866 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIK 555 (726)
Q Consensus 476 ~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 555 (726)
..+.+.+..|++....++.|+++..||........ ......++..++.++..+....++.+-..+..... .....
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 105 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQS--LGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADS---EGYAE 105 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCccccccCc--chHHHHhhhceeEEeeeccccccccccccccccCc---ccccc
Confidence 56778888888755446899999999864433211 12567788889998887752222211111100000 00011
Q ss_pred HHHHHHHHHHHc---------CCCCCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEeCCcccccccccC-------
Q 004866 556 DFISCARFLIEK---------EIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLDATNTLLY------- 616 (726)
Q Consensus 556 D~~~~~~~l~~~---------~~~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d~~~~~~~------- 616 (726)
++.......... .....++....|.+.||..+..++...+ +..+.++...++-........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~ 185 (299)
T COG1073 106 DFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELA 185 (299)
T ss_pred ccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHH
Confidence 111111111110 1113367888888888888888777665 222222222221111110000
Q ss_pred -CCCCCC--hhhhcc-------cCCCCChhHHHHHHhcCcccccccCCC-CCeEEEEecCCCCcChHHHHHHHHHHHhcC
Q 004866 617 -PILPLI--AADYEE-------FGYPGDIDDFHAIRNYSPYDNIQKDVL-YPAVLVTSSFNTRFGVWEAAKWVARVREST 685 (726)
Q Consensus 617 -~~~~~~--~~~~~~-------~g~~~~~~~~~~~~~~sp~~~i~~~~~-~P~lli~g~~D~~V~~~~~~~~~~~L~~~~ 685 (726)
...+.. ...+.. +..+. .. ...+...++...+.+ +. .|+|++||..|..||..++.+++.+.+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~d~~~~~~~-i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~ 262 (299)
T COG1073 186 RELIDYLITPGGFAPLPAPEAPLDTLP-LR-AVLLLLLDPFDDAEK-ISPRPVLLVHGERDEVVPLRDAEDLYEAARERP 262 (299)
T ss_pred HhhhhhhccCCCCCCCCcccccccccc-cc-hhhhccCcchhhHhh-cCCcceEEEecCCCcccchhhhHHHHhhhccCC
Confidence 000000 000000 00000 01 223555667776765 55 799999999999999999999999998842
Q ss_pred CCCCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHHhh
Q 004866 686 IYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKMM 724 (726)
Q Consensus 686 ~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l 724 (726)
...+++++++|.... .........+...|+.++|
T Consensus 263 -----~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 263 -----KKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred -----ceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 123337888897653 3333455667789998876
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00026 Score=67.75 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=111.1
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCC-CCCccccccccc
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGG-GGKKWHHDGRRT 548 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~-~g~~~~~~~~~~ 548 (726)
+.-.+|.+|..|-..|+... ..+.|+||..-| ++..+ ..|...+.+|+..||.|+.+|.--|=| +...- ...
T Consensus 7 i~~~~~~~I~vwet~P~~~~-~~~~~tiliA~G-f~rrm-dh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I----~ef 79 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNE-PKRNNTILIAPG-FARRM-DHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDI----NEF 79 (294)
T ss_dssp EEETTTEEEEEEEE---TTS----S-EEEEE-T-T-GGG-GGGHHHHHHHHTTT--EEEE---B----------------
T ss_pred eEcCCCCEEEEeccCCCCCC-cccCCeEEEecc-hhHHH-HHHHHHHHHHhhCCeEEEeccccccccCCCCCh----hhc
Confidence 45578999999999998754 456788888775 45443 568889999999999999999654422 11110 000
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc----CCCCCCChh
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL----YPILPLIAA 624 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~----~~~~~~~~~ 624 (726)
.-....+|+..+++||.+.|. .++|++-.|.-|=++...++. ++ ..-+|..+|++|+..++- +..+.....
T Consensus 80 tms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~ 154 (294)
T PF02273_consen 80 TMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQLPIE 154 (294)
T ss_dssp -HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GG
T ss_pred chHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhhcchh
Confidence 001235788899999998765 579999999999999999985 55 567788889999876531 111100000
Q ss_pred hh---ccc-CCCCChhHH-HHHHh--c----CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcE
Q 004866 625 DY---EEF-GYPGDIDDF-HAIRN--Y----SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPI 693 (726)
Q Consensus 625 ~~---~~~-g~~~~~~~~-~~~~~--~----sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 693 (726)
.. ..+ |.--..+.+ ....+ + |-...++. ...|.+.+++..|.-|-..+..++.+.+.... --
T Consensus 155 ~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~-l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~------~k 227 (294)
T PF02273_consen 155 QLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKR-LSIPFIAFTANDDDWVKQSEVEELLDNINSNK------CK 227 (294)
T ss_dssp G--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT---S-EEEEEETT-TTS-HHHHHHHHTT-TT--------EE
T ss_pred hCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhh-CCCCEEEEEeCCCccccHHHHHHHHHhcCCCc------ee
Confidence 00 000 111111111 11111 1 22334554 78999999999999998777776665554422 23
Q ss_pred EE-EcCCCCCC
Q 004866 694 LL-NLTTDIVE 703 (726)
Q Consensus 694 ~~-~~~~gH~~ 703 (726)
++ .+|++|-.
T Consensus 228 lysl~Gs~HdL 238 (294)
T PF02273_consen 228 LYSLPGSSHDL 238 (294)
T ss_dssp EEEETT-SS-T
T ss_pred EEEecCccchh
Confidence 44 79999964
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0032 Score=66.65 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=80.1
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECC-CCceeccc---cccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-SGALCSKP---QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~-tg~~~~~~---~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+.+||||++|+.+.... ..|.+++++ +|+..... .......+.++|||+.||.+... ...|..+++.
T Consensus 39 ~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~~~ 110 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN----ANCVSVSPLD 110 (330)
T ss_pred cEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC----CCeEEEEEEC
Confidence 457999999886653322 246777775 45432221 12244678999999988776432 2467777775
Q ss_pred CCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeE-------EeeccCCceEEeeeecCC
Q 004866 202 STD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT-------LIWECEGLAHCIVEHHEG 273 (726)
Q Consensus 202 t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~-------~l~~~~~~~~~~~~~~g~ 273 (726)
+.. ....+........-..+.++|||++|++.... ...|+++|+.+. +.+. .+..........++++|+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~~-g~l~~~~~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSDD-GHLVAQEPAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECCC-CcccccCCCceecCCCCCCceEEECCCCC
Confidence 422 11111111111111235689999999876543 346788887652 2221 111122223446678888
Q ss_pred EEEEEec
Q 004866 274 FLYLFTD 280 (726)
Q Consensus 274 ~l~~~t~ 280 (726)
.+|+...
T Consensus 188 ~lyv~~~ 194 (330)
T PRK11028 188 YAYCVNE 194 (330)
T ss_pred EEEEEec
Confidence 7777643
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.7e-05 Score=73.69 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=79.9
Q ss_pred CccEEEEEcCCCCCCCCccchH----HHHHHHHCCcEEEEEccCC-----C---------------CCCCCccccccccc
Q 004866 493 QNPGLLHGHGAYGELLDKRWRS----ELKSLLDRGWVVAFADVRG-----G---------------GGGGKKWHHDGRRT 548 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~----~~~~l~~~G~~v~~~d~RG-----~---------------g~~g~~~~~~~~~~ 548 (726)
+.|-||.+||...+ ..-|.. ....|.+.++-++.+|-+- . .+....|.......
T Consensus 3 ~k~riLcLHG~~~n--a~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQN--AEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcC--HHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 35778999985432 233433 3344444489899888541 1 11223444433221
Q ss_pred CCCCcHHHHHHHHHHHHH----cCCCCCCcEEEEEecccHHHHHHHHHcC--------CCceeEEEEeCCcccccccccC
Q 004866 549 KKLNSIKDFISCARFLIE----KEIVKEHKLAGWGYSAGGLLVAAAINCC--------PDLFRAVVLEVPFLDATNTLLY 616 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~p~~d~~~~~~~ 616 (726)
....++.+++++|.+ +|-. .||+|+|.||.+++.++... ...||.+|+.+++.-....
T Consensus 81 ---~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--- 150 (212)
T PF03959_consen 81 ---HEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--- 150 (212)
T ss_dssp ---GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----
T ss_pred ---ccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---
Confidence 234444455555443 3433 59999999999998887531 2357899988886532110
Q ss_pred CCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEE
Q 004866 617 PILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLN 696 (726)
Q Consensus 617 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 696 (726)
+ ..+. ....++.|+|-|+|..|..+++..+.++++..... ..++.
T Consensus 151 ---------~------------------~~~~-~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~-------~~v~~ 195 (212)
T PF03959_consen 151 ---------Y------------------QELY-DEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD-------ARVIE 195 (212)
T ss_dssp ---------G------------------TTTT---TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH-------EEEEE
T ss_pred ---------h------------------hhhh-ccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC-------cEEEE
Confidence 0 0000 11136889999999999999999999999999873 12335
Q ss_pred cCCCCCCCc
Q 004866 697 LTTDIVEEN 705 (726)
Q Consensus 697 ~~~gH~~~~ 705 (726)
-++||....
T Consensus 196 h~gGH~vP~ 204 (212)
T PF03959_consen 196 HDGGHHVPR 204 (212)
T ss_dssp ESSSSS---
T ss_pred ECCCCcCcC
Confidence 688997544
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0013 Score=69.49 Aligned_cols=198 Identities=11% Similarity=0.045 Sum_probs=100.1
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-Ccee---cccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALC---SKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-g~~~---~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+.++|||++|..+. ..+ ..|.++++++ |... .... ......+.++|||+.||.... ....|+++++
T Consensus 84 ~i~~~~~g~~l~v~~-~~~---~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~----~~~~v~v~d~ 155 (330)
T PRK11028 84 HISTDHQGRFLFSAS-YNA---NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL----KEDRIRLFTL 155 (330)
T ss_pred EEEECCCCCEEEEEE-cCC---CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC----CCCEEEEEEE
Confidence 467999999886553 322 2488888864 3221 1111 123355789999998877643 2347888888
Q ss_pred CCCCc-e-----eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec---cCC---c----e
Q 004866 201 GSTDE-D-----ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE---CEG---L----A 264 (726)
Q Consensus 201 ~t~~~-~-----~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~---~~~---~----~ 264 (726)
.+... . .........+ ..+.++|||+++++..... +.|.+++++...++.+.+.. ... + .
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p--~~~~~~pdg~~lyv~~~~~--~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGP--RHMVFHPNQQYAYCVNELN--SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred CCCCcccccCCCceecCCCCCC--ceEEECCCCCEEEEEecCC--CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 65321 0 0011111222 2468899999998765433 45666665432123222211 100 1 1
Q ss_pred EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCce--EEeecC-CCceEEEEeeeCCEEEEEEEeCCeeEE
Q 004866 265 HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWE--SVFIDD-QGLVVEDVDFCKTHMALILREGRTYRL 341 (726)
Q Consensus 265 ~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~v~~~~-~~~~l~~~~~~~~~lv~~~~~~g~~~l 341 (726)
...++|+|+.+|. +++... ...++.++.+ ...++ ..++.. ....+ .+...+++|++....++.-.+
T Consensus 232 ~i~~~pdg~~lyv-~~~~~~-----~I~v~~i~~~----~~~~~~~~~~~~~~~p~~~-~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 232 DIHITPDGRHLYA-CDRTAS-----LISVFSVSED----GSVLSFEGHQPTETQPRGF-NIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred eEEECCCCCEEEE-ecCCCC-----eEEEEEEeCC----CCeEEEeEEEeccccCCce-EECCCCCEEEEEEccCCcEEE
Confidence 2345678877766 454321 2334444322 11221 111111 11111 344556788877655655555
Q ss_pred EEEec
Q 004866 342 CSVSL 346 (726)
Q Consensus 342 ~~~~l 346 (726)
+.++.
T Consensus 301 ~~~~~ 305 (330)
T PRK11028 301 YEIDG 305 (330)
T ss_pred EEEcC
Confidence 55553
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.9e-05 Score=71.23 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC--CCC
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI--VKE 572 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~--~d~ 572 (726)
-++.+.|-|-+.. .|......|-. -+.++.+.++|.+.. .+..-+.|+.+.++.|..+-. .-.
T Consensus 9 ~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~~r-----------~~ep~~~di~~Lad~la~el~~~~~d 73 (244)
T COG3208 9 RLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRGDR-----------FGEPLLTDIESLADELANELLPPLLD 73 (244)
T ss_pred eEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCcccc-----------cCCcccccHHHHHHHHHHHhccccCC
Confidence 3555666554432 23333333322 488999999998753 111244555555665554422 223
Q ss_pred CcEEEEEecccHHHHHHHHHcC------CCceeEEEEeCCcccccccccCCCCCCChh----hhccc-CCCC----ChhH
Q 004866 573 HKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDATNTLLYPILPLIAA----DYEEF-GYPG----DIDD 637 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~----~~~~~-g~~~----~~~~ 637 (726)
...+++||||||.++--++.+. |..|-..-+.+|..+-.... ...... ...++ |.|. ++|.
T Consensus 74 ~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i----~~~~D~~~l~~l~~lgG~p~e~led~El 149 (244)
T COG3208 74 APFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQI----HHLDDADFLADLVDLGGTPPELLEDPEL 149 (244)
T ss_pred CCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCc----cCCCHHHHHHHHHHhCCCChHHhcCHHH
Confidence 5799999999999998887643 22122222333422211100 011111 11122 4442 2332
Q ss_pred H-----------HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc
Q 004866 638 F-----------HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN 705 (726)
Q Consensus 638 ~-----------~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 705 (726)
. ..+..|.-... . .+.+|+..+.|..|..|...+...|.+..+..= +.. ..++||++..
T Consensus 150 ~~l~LPilRAD~~~~e~Y~~~~~-~-pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f-----~l~--~fdGgHFfl~ 219 (244)
T COG3208 150 MALFLPILRADFRALESYRYPPP-A-PLACPIHAFGGEKDHEVSRDELGAWREHTKGDF-----TLR--VFDGGHFFLN 219 (244)
T ss_pred HHHHHHHHHHHHHHhcccccCCC-C-CcCcceEEeccCcchhccHHHHHHHHHhhcCCc-----eEE--EecCcceehh
Confidence 2 22222222222 2 378999999999999997777666665554321 122 4588998654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.019 Score=58.24 Aligned_cols=262 Identities=13% Similarity=0.139 Sum_probs=128.4
Q ss_pred eceeeCCCCCEEEEEEeCCCC-cEEEEEEEECCCCceecccc---ccc-cceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDN-DYFTLSVRNLNSGALCSKPQ---AVR-VSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~-e~~~l~v~dl~tg~~~~~~~---~~~-~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+-++|+|++++| |+....|. ....-|-+|-++|+...+.. .+. ...++.++||+.+|...+.. ..|-+..
T Consensus 43 tyl~~~~~~~~L-Y~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~----g~v~v~p 117 (346)
T COG2706 43 TYLAVNPDQRHL-YVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS----GSVSVYP 117 (346)
T ss_pred ceEEECCCCCEE-EEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC----ceEEEEE
Confidence 445799999987 55555433 23345666777787655432 222 25688999998777664432 2444444
Q ss_pred cCC-C--Cce-eEEee-ec------CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe---EEeeccCCceE
Q 004866 200 IGS-T--DED-ALLLE-ES------NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL---TLIWECEGLAH 265 (726)
Q Consensus 200 l~t-~--~~~-~lv~~-~~------d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~---~~l~~~~~~~~ 265 (726)
+.. + ... .++.. +. ..+..-...++||+++|+...- +..++++++++.+.-.+ ..+.+..+...
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEEEcccCccccccccccCCCCCcce
Confidence 432 1 111 11111 11 0111112457999999986554 34567777777533211 12222233344
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE-----eecC--CCceEEEEeeeC--CEEEEEEEeC
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV-----FIDD--QGLVVEDVDFCK--THMALILREG 336 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v-----~~~~--~~~~l~~~~~~~--~~lv~~~~~~ 336 (726)
..+-|+++..|+++.-.. ...++.++-. .++++++ +|.+ .......+.+.. ++||+.- .
T Consensus 196 i~FHpn~k~aY~v~EL~s------tV~v~~y~~~----~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN--R 263 (346)
T COG2706 196 IVFHPNGKYAYLVNELNS------TVDVLEYNPA----VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN--R 263 (346)
T ss_pred EEEcCCCcEEEEEeccCC------EEEEEEEcCC----CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec--C
Confidence 455566776676665442 1233333321 1222221 1221 122334455554 4555444 4
Q ss_pred CeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEe
Q 004866 337 RTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQ 415 (726)
Q Consensus 337 g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~ 415 (726)
|...|..+.++...++ ..+....+..-..|. +++++..++.++..-....+ -.+|+.|.++|++.++..
T Consensus 264 g~dsI~~f~V~~~~g~--L~~~~~~~teg~~PR-------~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 264 GHDSIAVFSVDPDGGK--LELVGITPTEGQFPR-------DFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCeEEEEEEcCCCCE--EEEEEEeccCCcCCc-------cceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEeccc
Confidence 4445555444322111 111000000111222 34456666666555544444 688999999999887654
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=72.90 Aligned_cols=101 Identities=25% Similarity=0.336 Sum_probs=67.6
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc--C
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK--E 568 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~ 568 (726)
.+.|.++.+||-.|+. ..|......|+. -|--|+.+|.|-+|.+-.. .. ....++...+..+++. +
T Consensus 50 ~~~Pp~i~lHGl~GS~--~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~~----h~~~~ma~dv~~Fi~~v~~ 118 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSK--ENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----TV----HNYEAMAEDVKLFIDGVGG 118 (315)
T ss_pred CCCCceEEecccccCC--CCHHHHHHHhcccccCceEEEecccCCCCccc-----cc----cCHHHHHHHHHHHHHHccc
Confidence 4678999999977754 567777777776 4889999999999975322 11 1234444444444432 1
Q ss_pred CCCCCcEEEEEecccH-HHHHHHHHcCCCceeEEEE
Q 004866 569 IVKEHKLAGWGYSAGG-LLVAAAINCCPDLFRAVVL 603 (726)
Q Consensus 569 ~~d~~ri~i~G~S~GG-~l~~~~~~~~p~~f~a~v~ 603 (726)
..--.++.|.|||||| -++++.+...|++..-+|.
T Consensus 119 ~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv 154 (315)
T KOG2382|consen 119 STRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIV 154 (315)
T ss_pred ccccCCceecccCcchHHHHHHHHHhcCcccceeEE
Confidence 1234689999999999 6666666667887655553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0026 Score=67.62 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=103.5
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-Cceeccc--c-------------ccccceeEEecCCCEEEEEEecCCC
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKP--Q-------------AVRVSNIAWAKDGQALIYVVTDQNK 190 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-g~~~~~~--~-------------~~~~~~~~WspDg~~l~y~~~~~~~ 190 (726)
+.++|||++|..+ +..++ .+.+++++. |...... . ......+.++|||+.+|....
T Consensus 92 i~~~~~g~~l~va-ny~~g---~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl---- 163 (345)
T PF10282_consen 92 IAVDPDGRFLYVA-NYGGG---SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL---- 163 (345)
T ss_dssp EEECTTSSEEEEE-ETTTT---EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET----
T ss_pred EEEecCCCEEEEE-EccCC---eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec----
Confidence 4689999998665 55444 377788776 4433221 0 112346899999999977632
Q ss_pred CCceEEEEEcCCCC-c--e--eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE---eecc--
Q 004866 191 RPYQIYCSIIGSTD-E--D--ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL---IWEC-- 260 (726)
Q Consensus 191 ~~~~l~~~~l~t~~-~--~--~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~---l~~~-- 260 (726)
....|+.+++.... . . .+.......+ -.+.++|||+++++.......-.++.++..+ +.++. +...
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP--Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~--g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP--RHLAFSPDGKYAYVVNELSNTVSVFDYDPSD--GSLTEIQTISTLPE 239 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE--EEEEE-TTSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEESCET
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCC--cEEEEcCCcCEEEEecCCCCcEEEEeecccC--CceeEEEEeeeccc
Confidence 23478888886543 1 1 1111111222 2467899999998876544433444444223 33322 2111
Q ss_pred -C----CceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE--EeecCCCceEEEEee--eCCEEEE
Q 004866 261 -E----GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES--VFIDDQGLVVEDVDF--CKTHMAL 331 (726)
Q Consensus 261 -~----~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--v~~~~~~~~l~~~~~--~~~~lv~ 331 (726)
. ......+++||+.||+ +|+..+ ...++.++.. .+..+. .++- .+....++.+ .+++|++
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyv-snr~~~-----sI~vf~~d~~----~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYV-SNRGSN-----SISVFDLDPA----TGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEE-EECTTT-----EEEEEEECTT----TTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEE
T ss_pred cccccCCceeEEEecCCCEEEE-EeccCC-----EEEEEEEecC----CCceEEEEEEeC-CCCCccEEEEeCCCCEEEE
Confidence 1 1233457788887666 565432 2334444322 223332 2222 1223455555 5677777
Q ss_pred EEEeCCeeEEEEEecCC
Q 004866 332 ILREGRTYRLCSVSLPL 348 (726)
Q Consensus 332 ~~~~~g~~~l~~~~l~~ 348 (726)
.-...+.-.++.+|.++
T Consensus 309 a~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EETTTTEEEEEEEETTT
T ss_pred EecCCCeEEEEEEeCCC
Confidence 66666665666666544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.02 Score=61.17 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=88.8
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
...+||||+++ |+.+++| .|.++|+.+++.+.... .....+++.|+||++++.+... +..+..+|..+.+
T Consensus 41 ~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle 111 (369)
T PF02239_consen 41 GLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE 111 (369)
T ss_dssp EEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred EEEecCCCCEE-EEEcCCC----eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence 34689999986 5556655 48999999998775433 3345679999999999877543 3478888877664
Q ss_pred ceeEEe-eec----CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe-EEeeccCCceEEeeeecCCEEEEE
Q 004866 205 EDALLL-EES----NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL-TLIWECEGLAHCIVEHHEGFLYLF 278 (726)
Q Consensus 205 ~~~lv~-~~~----d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~g~~l~~~ 278 (726)
.-..+. ... ...-...+.-++++...+++..+ ..++|++|..+..... +.+..........+++++++|+..
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEcc--CCeEEEEEeccccccceeeecccccccccccCcccceeeec
Confidence 211121 111 01122456668888876666554 4589999987742111 222222223345678888888776
Q ss_pred ecCcccCCCCCCeEEEEeeCC
Q 004866 279 TDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.+... ++..+|..
T Consensus 190 ~~~sn--------~i~viD~~ 202 (369)
T PF02239_consen 190 ANGSN--------KIAVIDTK 202 (369)
T ss_dssp EGGGT--------EEEEEETT
T ss_pred ccccc--------eeEEEeec
Confidence 55432 46666654
|
... |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0012 Score=69.32 Aligned_cols=193 Identities=14% Similarity=0.118 Sum_probs=107.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-----ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.+...++||||+++|-+. .+| .++++|=.+|+.+-... .+.+..++||||++.|+-...|. .+.+
T Consensus 192 FV~~VRysPDG~~Fat~g-sDg----ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-----t~KI 261 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG-SDG----KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-----TIKI 261 (603)
T ss_pred ceeeEEECCCCCeEEEec-CCc----cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc-----eEEE
Confidence 366789999999987663 233 48999999998765322 34677899999999998775443 2444
Q ss_pred EEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEE
Q 004866 198 SIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFL 275 (726)
Q Consensus 198 ~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l 275 (726)
+|+.+.. ...++....-+.-.+++-|.+ + .|+-.+..+ .|-+++.+.+. .++.+........ ..+++++++|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqk-d-~lItVSl~G---~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQK-D-HLITVSLSG---TINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeC-C-eEEEEEcCc---EEEEecccCCC-hhheecccccceeEEEEcCCCCEE
Confidence 5665554 333343333222346777872 2 333333322 35566666643 3334433333322 3456777555
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
|-- ..+ ..|...+.. . +.-..+........|..+...+ +.++...-++ .|+++++.
T Consensus 336 ~Sg-syD--------G~I~~W~~~-~---g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd---~l~~~~~~ 392 (603)
T KOG0318|consen 336 YSG-SYD--------GHINSWDSG-S---GTSDRLAGKGHTNQIKGMAASESGELFTIGWDD---TLRVISLK 392 (603)
T ss_pred Eee-ccC--------ceEEEEecC-C---ccccccccccccceEEEEeecCCCcEEEEecCC---eEEEEecc
Confidence 433 333 236666654 2 1112233333345566777666 5555554444 35555553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0091 Score=62.53 Aligned_cols=116 Identities=13% Similarity=0.011 Sum_probs=72.6
Q ss_pred CCCEEEEEEeCCC-CcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEe-----cCCCCCceEEEEEcCCCC-
Q 004866 132 DHKFLAYTMYDKD-NDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVT-----DQNKRPYQIYCSIIGSTD- 204 (726)
Q Consensus 132 DG~~la~~~~~~g-~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~-----~~~~~~~~l~~~~l~t~~- 204 (726)
|+++ +|+.|..- .-..+|+|+|.++++.+.....+.......||||+.||.... ....+...|-.+|+.+.+
T Consensus 11 ~~~~-v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 11 DARR-VYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCCE-EEEECCcccccCceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 5665 67766541 001469999999998775433333333359999999988754 112234578888988876
Q ss_pred ceeEEeeecCCc-----eEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 205 EDALLLEESNEN-----VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 205 ~~~lv~~~~d~~-----~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
...+... +++. +-..+.+|||||+|++.. ....+.+-++|++++
T Consensus 90 ~~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 90 IADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGK 138 (352)
T ss_pred EeEEccC-CCchhhccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCC
Confidence 3333322 2211 112467899999997643 333567889999873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00058 Score=72.61 Aligned_cols=87 Identities=20% Similarity=0.121 Sum_probs=60.5
Q ss_pred hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH
Q 004866 513 RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 592 (726)
Q Consensus 513 ~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~ 592 (726)
....+.|++ |+-|++.|++--+. .....+.-.++|++..+...++. +.++ +-++|.|+||.++++++.
T Consensus 120 RS~V~~Ll~-g~dVYl~DW~~p~~--------vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 120 RSTVEALLP-DHDVYITDWVNARM--------VPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHHHhC-CCcEEEEeCCCCCC--------CchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence 455688888 99999999764331 11123345778888665555533 3445 999999999999776654
Q ss_pred cC-----CCceeEEEEeCCccccc
Q 004866 593 CC-----PDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 593 ~~-----p~~f~a~v~~~p~~d~~ 611 (726)
.. |...+.+++..+.+|..
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCC
Confidence 43 66789999888877754
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=70.98 Aligned_cols=140 Identities=11% Similarity=0.096 Sum_probs=89.3
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
..+||+|++||-.+ ++.|.|+|.+|-+..++.. .+.+..+.|+.|+-.|.-..+.+ ..|...++..++-
T Consensus 14 c~fSp~g~yiAs~~------~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~----~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS------RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKD----PKVQVWSLVQPEW 83 (447)
T ss_pred eeECCCCCeeeeee------eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeecc----ceEEEEEeeccee
Confidence 36999999999875 3679999999887777644 66788899999998888775533 2566667655431
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCCEEEEEecCc
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~~ 282 (726)
--.+-+..++ .....|||||+.|+..+.-.. +|-++.+.+..+ ..+.-.. ....+.+.+||+...+.+.++
T Consensus 84 ~ckIdeg~ag--ls~~~WSPdgrhiL~tseF~l--riTVWSL~t~~~--~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 84 YCKIDEGQAG--LSSISWSPDGRHILLTSEFDL--RITVWSLNTQKG--YLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred EEEeccCCCc--ceeeeECCCcceEeeeeccee--EEEEEEecccee--EEecccccCceeEEECCCCceeeeeeccc
Confidence 1112222222 245789999999987765443 344444433211 1222222 223466778888877777654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=65.93 Aligned_cols=104 Identities=11% Similarity=0.079 Sum_probs=71.1
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEE-E
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY-C 197 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~-~ 197 (726)
..-+...+|.+||..++-++ . |+ ..|.|||+++|..+++.. .+.++-+.|||||..||-++.|.. ..|| .
T Consensus 195 h~pVtsmqwn~dgt~l~tAS-~-gs--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav---frlw~e 267 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTAS-F-GS--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV---FRLWQE 267 (445)
T ss_pred CceeeEEEEcCCCCEEeecc-c-Cc--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce---eeeehh
Confidence 45677889999999987654 2 32 469999999998887753 457788999999999988866532 2344 2
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
+..-+. .+-+.. ........|||+|++|+|....
T Consensus 268 ~q~wt~--erw~lg---sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 268 NQSWTK--ERWILG---SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ccccee--cceecc---CCceeeeeecCCCCEEEEEEcC
Confidence 222221 122211 1133456799999999998764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00033 Score=72.29 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=118.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+-.|.+|||+++||+.- ..| .|+++...|++.+.... .+.+..+.|+.||+.|+.+. ...+||.++++
T Consensus 305 ~~e~FeVShd~~fia~~G-~~G----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-----~~GeV~v~nl~ 374 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAG-NNG----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-----GTGEVYVWNLR 374 (514)
T ss_pred hhheeEecCCCCeEEEcc-cCc----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-----CCceEEEEecC
Confidence 455678999999998863 333 59999999998765333 66889999999999887763 23489999998
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC----ceEEeeeecCCEEEE
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG----LAHCIVEHHEGFLYL 277 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~----~~~~~~~~~g~~l~~ 277 (726)
.... .-.+...+.-.-..++.|++|.|++..+.++- -.||-.+-.-..+.++++..-.. -....++||...|.+
T Consensus 375 ~~~~-~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 375 QNSC-LHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred Ccce-EEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 7631 11232333333356788999999887665441 23333222111234455443221 123456788888888
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEE
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSV 344 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~ 344 (726)
.++...+ ..+|+-++-- ..-.+|-+. ..+-..+..++... ...+.+.++.|...|+.+
T Consensus 453 aS~~~kn-----alrLVHvPS~--TVFsNfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 453 ASRVKKN-----ALRLVHVPSC--TVFSNFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhcccc-----ceEEEeccce--eeeccCCCC--CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 8876432 3677766532 112334211 11111223333332 445556677787777654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00033 Score=71.24 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=66.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc---cccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA---VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~---~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+..+.||||.++|.-- +-+| .+.++|+.||+.+..... ....+.+|.|||.+++....| ..++..+
T Consensus 271 ~V~yi~wSPDdryLlaC---g~~e--~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r~i~~wd 340 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLAC---GFDE--VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----RTIIMWD 340 (519)
T ss_pred ceEEEEECCCCCeEEec---CchH--heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-----CcEEEec
Confidence 56778999999997532 1222 389999999987765432 345778999999997655333 2566666
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
++..... -.+....+-..+++.++||++++.... ..++.+++.++
T Consensus 341 lDgn~~~--~W~gvr~~~v~dlait~Dgk~vl~v~~---d~~i~l~~~e~ 385 (519)
T KOG0293|consen 341 LDGNILG--NWEGVRDPKVHDLAITYDGKYVLLVTV---DKKIRLYNREA 385 (519)
T ss_pred CCcchhh--cccccccceeEEEEEcCCCcEEEEEec---ccceeeechhh
Confidence 6543210 001111122335666777777765542 23455555544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.015 Score=61.39 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=85.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc----cccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+.-.++||.|-|+|-. |..| .++|||....+.+... ..+.+..++|+.|+++|+..-. ...+...++..
T Consensus 61 ~vtVAkySPsG~yiASG-D~sG----~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGE-Grerfg~~F~~ 134 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASG-DVSG----KVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGE-GRERFGHVFLW 134 (603)
T ss_pred eeEEEEeCCCceEEeec-CCcC----cEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEec-CccceeEEEEe
Confidence 45556899999988765 5566 4999998764443321 1457788999999999988732 22233344444
Q ss_pred EcCC-----------------------------CCceeEEeeecC----------CceEEEEEEcCCCcEEEEEEcCCCc
Q 004866 199 IIGS-----------------------------TDEDALLLEESN----------ENVYVNIRHTKDFHFVCVHTFSTTS 239 (726)
Q Consensus 199 ~l~t-----------------------------~~~~~lv~~~~d----------~~~~~~~~~s~Dg~~l~~~~~~~~~ 239 (726)
|-|+ ....+..|+.+. ..|.-.+.+||||+.++-... .
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---D 211 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---D 211 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC---C
Confidence 4332 111122333221 122235789999998654333 3
Q ss_pred eEEEEEeCCCCCCCeEEeeccC--CceEE--eeeecCCEEEEEec
Q 004866 240 SKVFLINAADPFSGLTLIWECE--GLAHC--IVEHHEGFLYLFTD 280 (726)
Q Consensus 240 ~~l~~~d~~~~~~~~~~l~~~~--~~~~~--~~~~~g~~l~~~t~ 280 (726)
..++++|-.+++ .+..+.... .+..| .|+||+.+|+-.+.
T Consensus 212 gki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 212 GKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred ccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 479999988743 222232111 12222 45677777665543
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.7e-05 Score=87.42 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=85.9
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccch--HHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 471 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWR--SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 471 ~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~--~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
.+.|... ..|+.|......+ .|++|++|||.-.. ....|. .....+..+..+|+.++||-+- +| |...+..
T Consensus 92 ~sEDCLy--lNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~ 165 (545)
T KOG1516|consen 92 GSEDCLY--LNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDS 165 (545)
T ss_pred CcCCCce--EEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCC
Confidence 3556544 4467776543223 89999999973321 112232 2223455568999999999642 22 2212211
Q ss_pred c-CCCCcHHHHHHHHHHHHHc--CC-CCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCcc
Q 004866 548 T-KKLNSIKDFISCARFLIEK--EI-VKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFL 608 (726)
Q Consensus 548 ~-~~~~~~~D~~~~~~~l~~~--~~-~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 608 (726)
. .+...+.|.+.|++|+.++ .+ -||++|.|+|+|+||..+..++.. ...+|+.+|..++..
T Consensus 166 ~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 166 AAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 1 3445678999999999875 11 399999999999999998877753 125899999887754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.018 Score=61.51 Aligned_cols=255 Identities=13% Similarity=0.017 Sum_probs=119.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc---------cccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA---------VRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~---------~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.++++||||++|+.+....+ ++.|+|.+|.+.+..... .+...+.-+|++..++++..+ ..+|
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~----~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I 152 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPG----TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEI 152 (369)
T ss_dssp EEEEE--TTTEEEEEEEETT----EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEE
T ss_pred ceEEEcCCCCEEEEEecCCC----ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----CCeE
Confidence 45689999999977644444 589999999887753221 134566778888877776543 3489
Q ss_pred EEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCc---eEEeeeec
Q 004866 196 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGL---AHCIVEHH 271 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~---~~~~~~~~ 271 (726)
|..|......-.... ..-..+.-+..|+|||+|++...+. .+.+-++|+++ .+...+... ... ....+-|.
T Consensus 153 ~vVdy~d~~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~--sn~i~viD~~~--~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANG--SNKIAVIDTKT--GKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp EEEETTTSSCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGG--GTEEEEEETTT--TEEEEEEE-SSSBEETTEEEEEET
T ss_pred EEEEeccccccceee-ecccccccccccCcccceeeecccc--cceeEEEeecc--ceEEEEeeccccccccccccccCC
Confidence 999976653221111 1223344567899999999876554 34788888876 333222221 111 11222233
Q ss_pred CCEEEEEecCcccCCCCCCeEEEEeeCCCC-CCCCCceEE--eecCCCceEEEEeeeCCEEEEEE-EeCCeeEEEEEecC
Q 004866 272 EGFLYLFTDAAKEGQEADNHYLLRCPVDAS-FPSRTWESV--FIDDQGLVVEDVDFCKTHMALIL-REGRTYRLCSVSLP 347 (726)
Q Consensus 272 g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v--~~~~~~~~l~~~~~~~~~lv~~~-~~~g~~~l~~~~l~ 347 (726)
+.-.++.+...+.. ..-++-.+.. . -....|+.+ ++.......-..++..+++++-. .......|.++|..
T Consensus 228 ~~g~vw~~~~~~~~----~~~~ig~~~v-~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 228 GFGPVWATSGLGYF----AIPLIGTDPV-SVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp TTEEEEEEEBSSSS----EEEEEE--TT-T-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred CcceEEeeccccce----ecccccCCcc-ccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 33333333322211 0112222221 1 123456533 11111111223344556766652 12235578888865
Q ss_pred CCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 348 LPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
+.+ .+ ..+........+ ...++.+++.+.++.- ..-.+|..||.++.+..
T Consensus 303 tl~-----~~-----~~i~~~~~~~~~--h~ef~~dG~~v~vS~~--~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 303 TLK-----VV-----KTITPGPGKRVV--HMEFNPDGKEVWVSVW--DGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp GTE-----EE-----E-HHHHHT--EE--EEEE-TTSSEEEEEEE----TTEEEEEETTTTEEE
T ss_pred Ccc-----ee-----EEEeccCCCcEe--ccEECCCCCEEEEEEe--cCCCEEEEEECCCcEEE
Confidence 321 01 112111110011 2235678888766443 33349999998887643
|
... |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0017 Score=61.95 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=90.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCC--------
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNK-------- 190 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~-------- 190 (726)
++..+.++||++.||... +..|+++|+.++..-++.. ..++..+.|--||++.|-...|..-
T Consensus 42 qVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred ceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc
Confidence 677788999999998763 2469999999998755432 2467888999999988654322210
Q ss_pred ----------------------------CCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceE
Q 004866 191 ----------------------------RPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSK 241 (726)
Q Consensus 191 ----------------------------~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 241 (726)
+...|+.+|++... ...++- |.+ .+..++...|||++|+-..+.+ .
T Consensus 116 ~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP-e~~-~~i~sl~v~~dgsml~a~nnkG---~ 190 (311)
T KOG0315|consen 116 SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP-EDD-TSIQSLTVMPDGSMLAAANNKG---N 190 (311)
T ss_pred ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC-CCC-cceeeEEEcCCCcEEEEecCCc---c
Confidence 12346667776654 333332 222 3344678899999986544433 3
Q ss_pred EEEEeCCCC--CCCeEEeeccCCc----eEEeeeecCCEEEEEec
Q 004866 242 VFLINAADP--FSGLTLIWECEGL----AHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 242 l~~~d~~~~--~~~~~~l~~~~~~----~~~~~~~~g~~l~~~t~ 280 (726)
.|++++-+. ..++.++.+-... ...-++||+++|.-.+.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 555555332 2334555443322 23456788887765544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0097 Score=57.98 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=108.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.++....|+||++ |++.+.++ .+++||+++|+..+... ...+-.+++++|++.|.--..| ..|.++++
T Consensus 65 ~v~dv~~s~dg~~-alS~swD~----~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt 134 (315)
T KOG0279|consen 65 FVSDVVLSSDGNF-ALSASWDG----TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNT 134 (315)
T ss_pred EecceEEccCCce-EEeccccc----eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc-----ceeeeeee
Confidence 5788899999997 45544444 59999999998766433 3356789999999988654333 24555555
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCc-EEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce--EEeeeecCCEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFH-FVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA--HCIVEHHEGFLYL 277 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--~~~~~~~g~~l~~ 277 (726)
-+... ..+.++....+..-+.|+|... -++++..-+ .-+-++|+.+- +.+.......+. ...++|||.....
T Consensus 135 ~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D--ktvKvWnl~~~--~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 135 LGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD--KTVKVWNLRNC--QLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred cccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC--ceEEEEccCCc--chhhccccccccEEEEEECCCCCEEec
Confidence 33221 1122221122333478999963 333333322 34566677662 222222222221 2356788875443
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
++ ....++..|++ . ... +..-+....+..+....+++.+....+. .|.++|++++
T Consensus 210 ----Gg-----kdg~~~LwdL~-~--~k~---lysl~a~~~v~sl~fspnrywL~~at~~--sIkIwdl~~~ 264 (315)
T KOG0279|consen 210 ----GG-----KDGEAMLWDLN-E--GKN---LYSLEAFDIVNSLCFSPNRYWLCAATAT--SIKIWDLESK 264 (315)
T ss_pred ----CC-----CCceEEEEEcc-C--Cce---eEeccCCCeEeeEEecCCceeEeeccCC--ceEEEeccch
Confidence 11 13457777776 2 122 2222233445666666666666554433 3777887654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0027 Score=70.95 Aligned_cols=148 Identities=10% Similarity=0.073 Sum_probs=88.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc-cccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..++|+|++..++.+...+| .|.|||+.+++..... ....+..++|+|||+.|+.+..+ ..|.++|+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~Dg----tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~R 197 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDS----FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPR 197 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCC----eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECC
Confidence 4677899999998766654444 5999999998754322 23456789999999977655322 368888987
Q ss_pred CCCceeEEeeecCCceEE----EEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCE
Q 004866 202 STDEDALLLEESNENVYV----NIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGF 274 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~----~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~ 274 (726)
++.. ...+......... -..+++|+++|+....++. ...|.++|+......+..+.-.. ......++++.+.
T Consensus 198 sg~~-i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 198 KQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred CCcE-EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 7642 1122222111111 1235689998877665543 36799999885333333222111 1223344555555
Q ss_pred EEEEec
Q 004866 275 LYLFTD 280 (726)
Q Consensus 275 l~~~t~ 280 (726)
+|+...
T Consensus 277 l~lsGk 282 (568)
T PTZ00420 277 IYLIGK 282 (568)
T ss_pred EEEEEE
Confidence 655543
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00077 Score=62.84 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=69.9
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCccccccc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQK 652 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~ 652 (726)
++++|+|.|+|||.+.+++.++. . .+|+..|.+.....+.. .+.... .|. ..+++..+.++ +..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~-~ig~~~-~y~----~~~~~h~~eL~-------~~~ 123 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEG-KIDRPE-EYA----DIATKCVTNFR-------EKN 123 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHH-HhCCCc-chh----hhhHHHHHHhh-------hcC
Confidence 46999999999999999999864 2 45677888776432211 000000 011 11223333333 111
Q ss_pred CCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 653 DVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 653 ~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
.--.+++....|....+.++.+.++.. -.+.+++|+.|.+..-++. ...+++|+.
T Consensus 124 --p~r~~vllq~gDEvLDyr~a~~~y~~~---------y~~~v~~GGdH~f~~fe~~---l~~I~~F~~ 178 (180)
T PRK04940 124 --RDRCLVILSRNDEVLDSQRTAEELHPY---------YEIVWDEEQTHKFKNISPH---LQRIKAFKT 178 (180)
T ss_pred --cccEEEEEeCCCcccCHHHHHHHhccC---------ceEEEECCCCCCCCCHHHH---HHHHHHHHh
Confidence 112478888889999888777665322 0234478999988663333 344567764
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0013 Score=62.28 Aligned_cols=174 Identities=13% Similarity=0.097 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCCCCCccchHH----HHHHHHCCcEEEEEccCC------CC--CCC-------------Cccccccc-
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSE----LKSLLDRGWVVAFADVRG------GG--GGG-------------KKWHHDGR- 546 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~----~~~l~~~G~~v~~~d~RG------~g--~~g-------------~~~~~~~~- 546 (726)
+.|-||++||--. .+..|+.- ...|.+. +-.+.+|-+- .. +.+ ..|.....
T Consensus 4 ~k~rvLcLHGfrQ--sg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~ 80 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQ--SGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEA 80 (230)
T ss_pred CCceEEEecchhh--ccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccc
Confidence 3577999998533 33455432 2333334 6666666541 10 110 23443333
Q ss_pred ccCCCCcHHH-HHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC--CC------ceeEEEEeCCcccccccccCC
Q 004866 547 RTKKLNSIKD-FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC--PD------LFRAVVLEVPFLDATNTLLYP 617 (726)
Q Consensus 547 ~~~~~~~~~D-~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~--p~------~f~a~v~~~p~~d~~~~~~~~ 617 (726)
.......++. +....+|+.++|--| ||.|.|.|+.|++.+++.. .. -|+-+|..+|+.-..
T Consensus 81 ~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~------ 150 (230)
T KOG2551|consen 81 SFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPS------ 150 (230)
T ss_pred ccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCc------
Confidence 2222334555 445567788888887 9999999999999988721 10 256666666653211
Q ss_pred CCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEc
Q 004866 618 ILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNL 697 (726)
Q Consensus 618 ~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 697 (726)
.+.+ +.. +.. .+++|.|-|.|..|..||...+..+++....+ +++.-
T Consensus 151 -------------~~~~----~~~-------~~~-~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a--------~vl~H 197 (230)
T KOG2551|consen 151 -------------KKLD----ESA-------YKR-PLSTPSLHIFGETDTIVPSERSEQLAESFKDA--------TVLEH 197 (230)
T ss_pred -------------chhh----hhh-------hcc-CCCCCeeEEecccceeecchHHHHHHHhcCCC--------eEEec
Confidence 0110 000 012 37899999999999999999999999988764 23356
Q ss_pred CCCCCCCchhhHHHH
Q 004866 698 TTDIVEENRYLQCKE 712 (726)
Q Consensus 698 ~~gH~~~~~~~~~~~ 712 (726)
.+||.........+.
T Consensus 198 pggH~VP~~~~~~~~ 212 (230)
T KOG2551|consen 198 PGGHIVPNKAKYKEK 212 (230)
T ss_pred CCCccCCCchHHHHH
Confidence 789986553333333
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.033 Score=56.16 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=72.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|+|||++|+.... +| .++++++.+++...... ......+.|+|+++.|+.... ...|+++++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~-~g----~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~~~ 80 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG-DG----TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIRLWDL 80 (289)
T ss_pred CEEEEEEcCCCCEEEEeec-Cc----EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEEEEEc
Confidence 4667789999999988753 33 58999998886433222 224458899999987776643 347888888
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+++.. ..+..... ....+.|+++++.++... ....++++|+.+
T Consensus 81 ~~~~~~-~~~~~~~~-~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~ 124 (289)
T cd00200 81 ETGECV-RTLTGHTS-YVSSVAFSPDGRILSSSS---RDKTIKVWDVET 124 (289)
T ss_pred Ccccce-EEEeccCC-cEEEEEEcCCCCEEEEec---CCCeEEEEECCC
Confidence 765321 12222221 234578899987766544 234688888875
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=71.20 Aligned_cols=101 Identities=28% Similarity=0.307 Sum_probs=66.7
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDR--GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
.|.|+++||.++.. ..|......+... -|.|+.+|.||+|.+. . . ........+.+..+.++-..
T Consensus 21 ~~~i~~~hg~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~---~------~~~~~~~~~~~~~~~~~~~~- 87 (282)
T COG0596 21 GPPLVLLHGFPGSS--SVWRPVFKVLPALAARYRVIAPDLRGHGRSD-P---A------GYSLSAYADDLAALLDALGL- 87 (282)
T ss_pred CCeEEEeCCCCCch--hhhHHHHHHhhccccceEEEEecccCCCCCC-c---c------cccHHHHHHHHHHHHHHhCC-
Confidence 35899999987644 2333322222221 1999999999988764 0 0 11222223344444432222
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.++.+.|+|+||.++..++.++|++++++|+..+..
T Consensus 88 -~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 -EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred -CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999999888654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.037 Score=56.80 Aligned_cols=241 Identities=12% Similarity=0.107 Sum_probs=121.6
Q ss_pred eeceeeCCCCCEEEEEEe-----CCCCcEEEEEEEECCCCceecccc-c--------cccceeEEecCCCEEEEEEecCC
Q 004866 124 EELSEVSPDHKFLAYTMY-----DKDNDYFTLSVRNLNSGALCSKPQ-A--------VRVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~-~--------~~~~~~~WspDg~~l~y~~~~~~ 189 (726)
++.+.+||||+.+..... ..|...--|-++|..|=.+..... . .....+..|+|||++|+...-.
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP- 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP- 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS-
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC-
Confidence 345679999999875432 234444568899998865443211 1 1224578999999998764432
Q ss_pred CCCceEEEEEcCCCC-ce-------eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC
Q 004866 190 KRPYQIYCSIIGSTD-ED-------ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE 261 (726)
Q Consensus 190 ~~~~~l~~~~l~t~~-~~-------~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 261 (726)
...|=++|+...+ .. .++|...+..|+ ....||+.+.+.....+....- ...+....
T Consensus 117 --a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~---~lC~DGsl~~v~Ld~~Gk~~~~----------~t~~F~~~ 181 (342)
T PF06433_consen 117 --ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS---MLCGDGSLLTVTLDADGKEAQK----------STKVFDPD 181 (342)
T ss_dssp --SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEE---EEETTSCEEEEEETSTSSEEEE----------EEEESSTT
T ss_pred --CCeEEEEECCCCceeeeecCCCEEEEEecCCCceE---EEecCCceEEEEECCCCCEeEe----------eccccCCC
Confidence 2357777876553 11 112322222332 3456676666555433321100 01111111
Q ss_pred Cc---eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCC---------------CCCceEEeecCCCceEEEEe
Q 004866 262 GL---AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP---------------SRTWESVFIDDQGLVVEDVD 323 (726)
Q Consensus 262 ~~---~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~v~~~~~~~~l~~~~ 323 (726)
.+ ..+.....++.+||.|-.+ .|+.+++. ... ...|+ |. +..+-.++
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~Sy~G---------~v~~~dls-g~~~~~~~~~~~~t~~e~~~~Wr---PG--G~Q~~A~~ 246 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVSYEG---------NVYSADLS-GDSAKFGKPWSLLTDAEKADGWR---PG--GWQLIAYH 246 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEBTTS---------EEEEEEET-TSSEEEEEEEESS-HHHHHTTEE---E---SSS-EEEE
T ss_pred CcccccccceECCCCeEEEEecCC---------EEEEEecc-CCcccccCcccccCccccccCcC---Cc--ceeeeeec
Confidence 11 1122234567888876532 36666654 111 12333 11 22333444
Q ss_pred eeCCEEEEEEEe-------CCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCC
Q 004866 324 FCKTHMALILRE-------GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVM 396 (726)
Q Consensus 324 ~~~~~lv~~~~~-------~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~ 396 (726)
...++||+.... ++..+|+++|+.+++ ++ ..++++..+.+|.. +.+..=++|..+. .
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-----rv-----~Ri~l~~~~~Si~V----sqd~~P~L~~~~~--~ 310 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-----RV-----ARIPLEHPIDSIAV----SQDDKPLLYALSA--G 310 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-----EE-----EEEEEEEEESEEEE----ESSSS-EEEEEET--T
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCe-----EE-----EEEeCCCccceEEE----ccCCCcEEEEEcC--C
Confidence 456788887643 234689999987643 22 23555444434432 2344445555544 2
Q ss_pred CceEEEEECCCCeEE
Q 004866 397 PDAVVDYDLSYGKWN 411 (726)
Q Consensus 397 P~~~~~~d~~~~~~~ 411 (726)
-..++.+|..+|+..
T Consensus 311 ~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 311 DGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEETTT--EE
T ss_pred CCeEEEEeCcCCcEE
Confidence 258999999998754
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.011 Score=58.59 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=110.5
Q ss_pred eecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee-----ccc-cccccceeEEecCCCEEE
Q 004866 109 LDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC-----SKP-QAVRVSNIAWAKDGQALI 182 (726)
Q Consensus 109 ld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~-----~~~-~~~~~~~~~WspDg~~l~ 182 (726)
|+.+.|. +|++ .++.+.||.||++||-..+. + .|.+|++..-+.. +.. ..+....+.|+||-+.++
T Consensus 77 l~~~~LK-gH~~--~vt~~~FsSdGK~lat~~~D-r----~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 77 LNVSVLK-GHKK--EVTDVAFSSDGKKLATISGD-R----SIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVV 148 (420)
T ss_pred hhhhhhh-ccCC--ceeeeEEcCCCceeEEEeCC-c----eEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEE
Confidence 3555554 3332 67888999999999987642 2 4889998763211 111 123446689999999998
Q ss_pred EEEecCCCCCceEEEEEcCCCC----------ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCC
Q 004866 183 YVVTDQNKRPYQIYCSIIGSTD----------EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS 252 (726)
Q Consensus 183 y~~~~~~~~~~~l~~~~l~t~~----------~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~ 252 (726)
+... +...||.+.+.... .|-+-|++...--.+++.....+++|.-.+. .+.|.++++.+ .
T Consensus 149 v~~~----~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~---dt~i~lw~lkG--q 219 (420)
T KOG2096|consen 149 VSVK----RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL---DTKICLWDLKG--Q 219 (420)
T ss_pred EEEc----cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC---CCcEEEEecCC--c
Confidence 8754 33467666553211 1111122221112234555666666643222 35688888875 2
Q ss_pred CeEEeeccC-CceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec-CCCceEEEEeeeC-CEE
Q 004866 253 GLTLIWECE-GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID-DQGLVVEDVDFCK-THM 329 (726)
Q Consensus 253 ~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~~~~~-~~l 329 (726)
.+..+.... ......++|+|+.+....-.+ +.+++..=...+.+-.....++.- .....+-.+...+ ..-
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTp-------DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-------DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCC-------CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 233332222 234456788887655433222 244544433211111111111111 1112222222222 455
Q ss_pred EEEEEeCCeeEEEEEecC
Q 004866 330 ALILREGRTYRLCSVSLP 347 (726)
Q Consensus 330 v~~~~~~g~~~l~~~~l~ 347 (726)
.++.+.+|.-+|+-.|+.
T Consensus 293 ~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eEEEecCCcEEEeeccce
Confidence 667788898888777664
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.018 Score=63.92 Aligned_cols=114 Identities=10% Similarity=0.094 Sum_probs=72.8
Q ss_pred EeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCcee-------c-ccc-ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALC-------S-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~-------~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+..++||| |+++||-+. .+| .|.+||+.++... . +.. ...+..+.|+|++..++.+... .
T Consensus 77 ~V~~v~fsP~d~~~LaSgS-~Dg----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~----D 147 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS-EDG----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA----D 147 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe-CCC----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC----C
Confidence 567789999 888887664 334 5999999875321 1 111 2356778999997655555432 2
Q ss_pred ceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 193 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
..|.++|+.++.. ...+.... .....+.|+|||+.|+..+. ...|.++|+.++
T Consensus 148 gtVrIWDl~tg~~-~~~l~~h~-~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg 200 (493)
T PTZ00421 148 MVVNVWDVERGKA-VEVIKCHS-DQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDG 200 (493)
T ss_pred CEEEEEECCCCeE-EEEEcCCC-CceEEEEEECCCCEEEEecC---CCEEEEEECCCC
Confidence 3688889887642 22222222 22346889999998775544 346888898774
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.066 Score=53.89 Aligned_cols=195 Identities=11% Similarity=-0.004 Sum_probs=109.2
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEe-cCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWA-KDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~Ws-pDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
++.|.++...|.|+ |..+. .|+.+++++++........ ..++... +| ..|+++.. ..+.+.++.+++
T Consensus 4 gp~~d~~~g~l~~~-D~~~~---~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~-g~l~v~~~------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV-DIPGG---RIYRVDPDTGEVEVIDLPG-PNGMAFDRPD-GRLYVADS------GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEETTTTEEEEEESSS-EEEEEEECTT-SEEEEEET------TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEE-EcCCC---EEEEEECCCCeEEEEecCC-CceEEEEccC-CEEEEEEc------CceEEEecCCCc
Confidence 46788867777565 65554 5999999998765433333 4556666 66 55766632 134555887765
Q ss_pred ceeEEeeecC--C-ceEEEEEEcCCCcEEEEEEcCCC----c--eEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCE
Q 004866 205 EDALLLEESN--E-NVYVNIRHTKDFHFVCVHTFSTT----S--SKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGF 274 (726)
Q Consensus 205 ~~~lv~~~~d--~-~~~~~~~~s~Dg~~l~~~~~~~~----~--~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~ 274 (726)
...+.-...+ . ...-++.+.+||+ |+++..... . ..||.++... +.+.+..... .....++++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~---~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG---KVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS---EEEEEEEEESSEEEEEEETTSSE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC---eEEEEecCcccccceEECCcchh
Confidence 3333222112 1 2234688999999 666654332 1 5799999872 3334433322 223457889998
Q ss_pred EEEEecCcccCCCCCCeEEEEeeCCCCCCC--CCceEEeecCCC-ceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPVDASFPS--RTWESVFIDDQG-LVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~v~~~~~~-~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
||+.... +.+|++++++ .... ...+.++..... ....++.+.. +.|++... +..+|.+++.+
T Consensus 148 lyv~ds~--------~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~--~~~~I~~~~p~ 213 (246)
T PF08450_consen 148 LYVADSF--------NGRIWRFDLD-ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW--GGGRIVVFDPD 213 (246)
T ss_dssp EEEEETT--------TTEEEEEEEE-TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE--TTTEEEEEETT
T ss_pred eeecccc--------cceeEEEecc-ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc--CCCEEEEECCC
Confidence 8875432 2458888875 2221 111222222222 2477888875 56666655 33477788865
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=78.55 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=69.9
Q ss_pred ccEEEEEcCCCCCCCCccc--hHHHHHHHH-CCcEEEEEccCCCCCCCCccccccc----ccCCCCcHHHHHHHHHHHHH
Q 004866 494 NPGLLHGHGAYGELLDKRW--RSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGR----RTKKLNSIKDFISCARFLIE 566 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~--~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~----~~~~~~~~~D~~~~~~~l~~ 566 (726)
.|++|++-|. +. ....+ ...+..||+ .|-.|++...|-.|++-. +..... ...-...++|+..-++++..
T Consensus 29 gpifl~~ggE-~~-~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P-~~~~s~~nL~yLt~~QALaD~a~F~~~~~~ 105 (434)
T PF05577_consen 29 GPIFLYIGGE-GP-IEPFWINNGFMWELAKEFGALVVALEHRYYGKSQP-FGDLSTENLRYLTSEQALADLAYFIRYVKK 105 (434)
T ss_dssp SEEEEEE--S-S--HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-T-TGGGGGSTTTC-SHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-Cc-cchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCC-ccccchhhHHhcCHHHHHHHHHHHHHHHHH
Confidence 7999998553 21 11111 123455666 599999999998776421 111111 11223467888888888875
Q ss_pred cC-CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccc
Q 004866 567 KE-IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 567 ~~-~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~ 610 (726)
+- ..+..++.++|+||||.|++++-..+|++|.++++.++++..
T Consensus 106 ~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 106 KYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp HTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCH
T ss_pred hhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeee
Confidence 43 335569999999999999999999999999999999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.034 Score=62.31 Aligned_cols=113 Identities=9% Similarity=0.055 Sum_probs=72.7
Q ss_pred EeeceeeCCC-CCEEEEEEeCCCCcEEEEEEEECCCCce-ec--------ccc-ccccceeEEecCCCEEEEEEecCCCC
Q 004866 123 YEELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGAL-CS--------KPQ-AVRVSNIAWAKDGQALIYVVTDQNKR 191 (726)
Q Consensus 123 ~~~~~~~SPD-G~~la~~~~~~g~e~~~l~v~dl~tg~~-~~--------~~~-~~~~~~~~WspDg~~l~y~~~~~~~~ 191 (726)
.+..++|||+ ++.||-+. .+| .|+|||+.++.. .. +.. ...+..++|+|++..++.+...+
T Consensus 76 ~V~~lafsP~~~~lLASgS-~Dg----tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D--- 147 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGS-EDL----TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD--- 147 (568)
T ss_pred CEEEEEEcCCCCCEEEEEe-CCC----eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC---
Confidence 5677899997 66665543 344 599999986532 10 111 23567899999999887664322
Q ss_pred CceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 192 PYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
..|.++|+.+++.. ..+... .....+.|++||+.|+..+. ...|.++|+.++
T Consensus 148 -gtIrIWDl~tg~~~-~~i~~~--~~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg 199 (568)
T PTZ00420 148 -SFVNIWDIENEKRA-FQINMP--KKLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQ 199 (568)
T ss_pred -CeEEEEECCCCcEE-EEEecC--CcEEEEEECCCCCEEEEEec---CCEEEEEECCCC
Confidence 36888898876521 122212 22346889999998865543 246888898874
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0089 Score=66.26 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=85.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|+|++..+..+...++ .|.|||+.+++...... ...+..++|+|||+.|+....| ..|.++|+
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~Dg----tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~ 197 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADM----VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDP 197 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCC----EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEEC
Confidence 4667889999754444433333 59999999987654322 3456789999999977665332 36888898
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcC-CCceEEEEEeCCCCCCCeEEeeccC-Cce-EEeeeecCCEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS-TTSSKVFLINAADPFSGLTLIWECE-GLA-HCIVEHHEGFLYL 277 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~l~~~~-~~~-~~~~~~~g~~l~~ 277 (726)
.+++. ...+..........+.|++++..|+....+ .....|.++|+.+.......+.... ... ...++++++.||.
T Consensus 198 rsg~~-v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 198 RDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI 276 (493)
T ss_pred CCCcE-EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE
Confidence 77642 111111111122346788888877654433 2346789999876432222221111 111 2345667776665
Q ss_pred Ee
Q 004866 278 FT 279 (726)
Q Consensus 278 ~t 279 (726)
.+
T Consensus 277 gg 278 (493)
T PTZ00421 277 GS 278 (493)
T ss_pred EE
Confidence 54
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0053 Score=56.20 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=78.5
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhc
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYE 627 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~ 627 (726)
+|-....+|.++.+..-+..- ++.+.+++||.|+.+++..+.+....++++++.+|.- +.+.
T Consensus 37 ~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd-~~~~-------------- 98 (181)
T COG3545 37 DWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD-VSRP-------------- 98 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC-cccc--------------
Confidence 344568899999888776542 4569999999999999999987666788888887742 2210
Q ss_pred ccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhc
Q 004866 628 EFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRES 684 (726)
Q Consensus 628 ~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~ 684 (726)
.. ....+..++|+...+ ...|.+++....|+.|++++++.+++++-.+
T Consensus 99 -----~~--~~~~~~tf~~~p~~~--lpfps~vvaSrnDp~~~~~~a~~~a~~wgs~ 146 (181)
T COG3545 99 -----EI--RPKHLMTFDPIPREP--LPFPSVVVASRNDPYVSYEHAEDLANAWGSA 146 (181)
T ss_pred -----cc--chhhccccCCCcccc--CCCceeEEEecCCCCCCHHHHHHHHHhccHh
Confidence 00 011233445554333 4778899999999999999999999888653
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0004 Score=70.00 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=62.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
-+..+.|||||++||-.+- +. .+.+||-.+|+.+.... ...+..++||.|+|-|+-.+.|. .|-.+++
T Consensus 369 lVn~V~fSPd~r~IASaSF-Dk----SVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs-----TLKvw~V 438 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASF-DK----SVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS-----TLKVWDV 438 (480)
T ss_pred heeeEEECCCccEEEEeec-cc----ceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc-----eEEEEEe
Confidence 4566789999999998753 33 38999999998776433 34667899999998665443333 3444455
Q ss_pred CCCCceeEEeeec---CCceEEEEEEcCCCcEEE
Q 004866 201 GSTDEDALLLEES---NENVYVNIRHTKDFHFVC 231 (726)
Q Consensus 201 ~t~~~~~lv~~~~---d~~~~~~~~~s~Dg~~l~ 231 (726)
.+.+ +.++-+ |+-| .+.|||||+.++
T Consensus 439 ~tkK---l~~DLpGh~DEVf--~vDwspDG~rV~ 467 (480)
T KOG0271|consen 439 RTKK---LKQDLPGHADEVF--AVDWSPDGQRVA 467 (480)
T ss_pred eeee---ecccCCCCCceEE--EEEecCCCceee
Confidence 4432 222222 3333 468999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0026 Score=65.15 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=70.4
Q ss_pred EEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 122 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 122 ~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
..++.++|.|+|++|+-++- + .+..+||+.|+..+.... ...+.+++|-+||.-+.-...|.. .+| +|
T Consensus 262 ~RVs~VafHPsG~~L~Tasf-D----~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~---~Rv--WD 331 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASF-D----STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL---GRV--WD 331 (459)
T ss_pred hhheeeeecCCCceeeeccc-c----cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch---hhe--ee
Confidence 46888999999999987643 2 347899999997665433 346789999999975443333322 234 46
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 245 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 245 (726)
+.++. -+++++..-.. ..++.|||+|-.|+-. ..+.+..||-+
T Consensus 332 lRtgr-~im~L~gH~k~-I~~V~fsPNGy~lATg-s~Dnt~kVWDL 374 (459)
T KOG0272|consen 332 LRTGR-CIMFLAGHIKE-ILSVAFSPNGYHLATG-SSDNTCKVWDL 374 (459)
T ss_pred cccCc-EEEEecccccc-eeeEeECCCceEEeec-CCCCcEEEeee
Confidence 66663 34444432222 3578999999877633 33334444433
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0051 Score=65.62 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=66.3
Q ss_pred CCccEEEE----EcCCCCCCCCccc--hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHH
Q 004866 492 NQNPGLLH----GHGAYGELLDKRW--RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLI 565 (726)
Q Consensus 492 ~~~P~vl~----~hGg~~~~~~~~~--~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 565 (726)
.+.|.||. +|| +|.. .| ..++-.-+..|.-|..+-+.-..+-| .+++|+..+....+
T Consensus 67 ~krP~vViDPRAGHG-pGIG---GFK~dSevG~AL~~GHPvYFV~F~p~P~pg-------------QTl~DV~~ae~~Fv 129 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIG---GFKPDSEVGVALRAGHPVYFVGFFPEPEPG-------------QTLEDVMRAEAAFV 129 (581)
T ss_pred CCCCeEEeCCCCCCC-CCcc---CCCcccHHHHHHHcCCCeEEEEecCCCCCC-------------CcHHHHHHHHHHHH
Confidence 45787774 465 2221 23 23344445569988888876544322 47888877655444
Q ss_pred Hc---CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEE-EeCCccccc
Q 004866 566 EK---EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV-LEVPFLDAT 611 (726)
Q Consensus 566 ~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v-~~~p~~d~~ 611 (726)
++ -.-+..|..++|.+.||.+++.+++.+|+++.-+| +.+|+.-|.
T Consensus 130 ~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywa 179 (581)
T PF11339_consen 130 EEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWA 179 (581)
T ss_pred HHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccccc
Confidence 42 11233499999999999999999999999886554 456654443
|
Their function is unknown. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0037 Score=63.28 Aligned_cols=71 Identities=15% Similarity=0.052 Sum_probs=50.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+-..+|||||++||-.+ | ..++++||+.|..+...-. ..-+..++|||||+.|+-... ...|.+++..
T Consensus 118 Vl~~~fsp~g~~l~tGs---G--D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~-----dg~I~lwdpk 187 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGS---G--DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK-----DGSIRLWDPK 187 (480)
T ss_pred EEEEEecCCCceEEecC---C--CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc-----CCeEEEecCC
Confidence 44568999999987542 3 4689999999865543322 334677999999999976543 3468888876
Q ss_pred CCC
Q 004866 202 STD 204 (726)
Q Consensus 202 t~~ 204 (726)
+++
T Consensus 188 tg~ 190 (480)
T KOG0271|consen 188 TGQ 190 (480)
T ss_pred CCC
Confidence 665
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.018 Score=63.64 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=88.1
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEEC-CCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNL-NSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl-~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
...+..++|||||++|+=..+ ..+|+|||+ ..+..+.... ...+..+.|+|+|+.|+-...| ..|++
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~-----D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~tvri 272 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSD-----DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----GTVRI 272 (456)
T ss_pred ccceeeeEECCCCcEEEEecC-----CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCC-----CcEEE
Confidence 346788899999996655432 357999999 4445444322 3456889999999555444333 36888
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC-eEEeeccCCc---eEEeeeecCC
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG-LTLIWECEGL---AHCIVEHHEG 273 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~-~~~l~~~~~~---~~~~~~~~g~ 273 (726)
+++.+++....+ ..... ....+.+++||++|+..+. ...|.++|+.++... .+.+...... ....++++++
T Consensus 273 Wd~~~~~~~~~l-~~hs~-~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 273 WDVRTGECVRKL-KGHSD-GISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred EeccCCeEEEee-eccCC-ceEEEEECCCCCEEEEcCC---CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 888886532222 22222 2345789999999876533 456888899874311 1233333323 2234557777
Q ss_pred EEEEEec
Q 004866 274 FLYLFTD 280 (726)
Q Consensus 274 ~l~~~t~ 280 (726)
.++..+.
T Consensus 348 ~ll~~~~ 354 (456)
T KOG0266|consen 348 YLLSASL 354 (456)
T ss_pred EEEEecC
Confidence 6665544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.014 Score=64.36 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=117.3
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc-c-ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-Q-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
+..+..++.||||++||-..+ +| -+.|||..+|--.... . ...+..+.|+.+|+.++-...|.+ |..+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~e-Dg----KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-----VRAw 419 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAE-DG----KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-----VRAW 419 (893)
T ss_pred ccceeeEEECCCCcEEEeccC-CC----cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-----EEee
Confidence 557788899999999988754 23 3999999988544322 2 346788999999998887766654 5555
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE-eeccCCceE-EeeeecCCEEE
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL-IWECEGLAH-CIVEHHEGFLY 276 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~-l~~~~~~~~-~~~~~~g~~l~ 276 (726)
|+.... .--.|..+.+.-+.-++..|.|.-++ .......+|++++++++ +..- +...++.+. ..++++|+.|+
T Consensus 420 DlkRYr-NfRTft~P~p~QfscvavD~sGelV~--AG~~d~F~IfvWS~qTG--qllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 420 DLKRYR-NFRTFTSPEPIQFSCVAVDPSGELVC--AGAQDSFEIFVWSVQTG--QLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred eecccc-eeeeecCCCceeeeEEEEcCCCCEEE--eeccceEEEEEEEeecC--eeeehhcCCCCcceeeEEccccCeEE
Confidence 554332 12244445555555567777787654 34445678999999994 4333 333344333 35678888777
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEec
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l 346 (726)
-.+... ..+++.+=-. .+..+++ ....++.-..+.+.++.|.+...+ | +|..+|.
T Consensus 495 S~SWDk-------TVRiW~if~s----~~~vEtl-~i~sdvl~vsfrPdG~elaVaTld-g--qItf~d~ 549 (893)
T KOG0291|consen 495 SGSWDK-------TVRIWDIFSS----SGTVETL-EIRSDVLAVSFRPDGKELAVATLD-G--QITFFDI 549 (893)
T ss_pred eccccc-------eEEEEEeecc----CceeeeE-eeccceeEEEEcCCCCeEEEEEec-c--eEEEEEh
Confidence 655432 2455544221 1222332 222334334566667777666543 3 3444443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.018 Score=55.69 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=85.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCC-----------
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNK----------- 190 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~----------- 190 (726)
++..+.|+|-..-+.++.. |+ -.|.+||..+++.+..+. ........|+|||.++++...++.-
T Consensus 66 svdql~w~~~~~d~~atas--~d--k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~ 141 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATAS--GD--KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV 141 (313)
T ss_pred chhhheeCCCCCcceEEec--CC--ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccccee
Confidence 5667788887777666543 32 258999999998887654 4455678999999999887544320
Q ss_pred ---------------CCceEEEEEcCCCCceeEEeeecCC--------ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeC
Q 004866 191 ---------------RPYQIYCSIIGSTDEDALLLEESNE--------NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINA 247 (726)
Q Consensus 191 ---------------~~~~l~~~~l~t~~~~~lv~~~~d~--------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 247 (726)
..+.++...-|-+...++-|.+..+ .-.+-+.++|+|||+++.+.+ .-+-++|+
T Consensus 142 ~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD---AlvSLWD~ 218 (313)
T KOG1407|consen 142 NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD---ALVSLWDV 218 (313)
T ss_pred ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc---ceeeccCh
Confidence 1123444444433333333322111 111236789999999876653 23556666
Q ss_pred CCCCCCeEEeeccCCc-eEEeeeecCCEEEEE
Q 004866 248 ADPFSGLTLIWECEGL-AHCIVEHHEGFLYLF 278 (726)
Q Consensus 248 ~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~ 278 (726)
+.-- =.+.++.-+-. ....++++|+.|.-.
T Consensus 219 ~ELi-C~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 219 DELI-CERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred hHhh-hheeeccccCceEEEEeccCcceeecc
Confidence 4410 01233222222 234677888866543
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0017 Score=66.07 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=75.9
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHH---HCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHH----HHHHHHH
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLL---DRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS----CARFLIE 566 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~---~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~----~~~~l~~ 566 (726)
.++|+++-|-||.. .-|......|. ...+.|+.....|+...... ..........+++|.++ .++.++.
T Consensus 2 ~~li~~IPGNPGlv--~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV--EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChH--HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 47899999999853 34445555555 34899999999998754333 00012234456666655 3344433
Q ss_pred cCCCCCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEeCCcc
Q 004866 567 KEIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFL 608 (726)
Q Consensus 567 ~~~~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~ 608 (726)
+......++.++|||.|+|+++.++.+.+ ..++.+++..|.+
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 22114579999999999999999999998 6778888888865
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.26 Score=50.21 Aligned_cols=246 Identities=15% Similarity=0.119 Sum_probs=113.4
Q ss_pred EEEEEECC--CCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEe---eecCCceEEE
Q 004866 149 TLSVRNLN--SGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLL---EESNENVYVN 220 (726)
Q Consensus 149 ~l~v~dl~--tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~---~~~d~~~~~~ 220 (726)
.|++++++ +|+...... ..+...++|+|+++.||....+.....-..|.+|-.++.- .++- ....++ +.
T Consensus 17 gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p--~y 93 (346)
T COG2706 17 GIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPP--CY 93 (346)
T ss_pred ceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCC--eE
Confidence 36666655 455433221 4466789999999999877554332233445555433321 1111 112233 34
Q ss_pred EEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc----------eE-EeeeecCCEEEEEecCcccCCCCC
Q 004866 221 IRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL----------AH-CIVEHHEGFLYLFTDAAKEGQEAD 289 (726)
Q Consensus 221 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~----------~~-~~~~~~g~~l~~~t~~~~~~~~~~ 289 (726)
++.++||++|+......+.-.++-+..++.-..+..+....+. .. ..++|+++.|+. .+.+.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v-~DLG~D----- 167 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV-PDLGTD----- 167 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE-eecCCc-----
Confidence 6779999998876655543333333332211111111111111 12 235677765544 454432
Q ss_pred CeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCC
Q 004866 290 NHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK 369 (726)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 369 (726)
...+++++.. ......-..+ .+..+-.=--+++.++.+|++.--++.-.++.++-..++ +..+.. ...+|+
T Consensus 168 ri~~y~~~dg-~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~------~~~lQ~-i~tlP~ 238 (346)
T COG2706 168 RIFLYDLDDG-KLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK------FEELQT-IDTLPE 238 (346)
T ss_pred eEEEEEcccC-cccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce------EEEeee-eccCcc
Confidence 2445555411 1111111112 222111111345556677766655665556666543221 211111 112332
Q ss_pred ------ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeec
Q 004866 370 ------YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQN 417 (726)
Q Consensus 370 ------~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~ 417 (726)
+...|. .+.|+..+ +.-.....-=.+|.+|..+++++.+....
T Consensus 239 dF~g~~~~aaIh----is~dGrFL-YasNRg~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 239 DFTGTNWAAAIH----ISPDGRFL-YASNRGHDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred ccCCCCceeEEE----ECCCCCEE-EEecCCCCeEEEEEEcCCCCEEEEEEEec
Confidence 222222 34555543 33333333446778888888887766544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.017 Score=60.00 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=86.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc-----cccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-----VRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-----~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
-+....|+|+|+..++++.++ --+|.+|+.+++...+... .....|.-|||++.|++.- ....|++
T Consensus 259 Pi~~a~f~p~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-----~~G~I~l 329 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGRR----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-----NNGHIHL 329 (514)
T ss_pred ccceeeecCCCceEEEecccc----eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-----cCceEEe
Confidence 345567999999777765332 3489999999987765431 2456789999999887762 3345666
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC---ceEEeeeecCCE
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG---LAHCIVEHHEGF 274 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~~~~~~~~g~~ 274 (726)
....|++ ++..-.-.....++.||.||+.|+++... .+||++|+... .........+ +....++.+|..
T Consensus 330 LhakT~e---li~s~KieG~v~~~~fsSdsk~l~~~~~~---GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 330 LHAKTKE---LITSFKIEGVVSDFTFSSDSKELLASGGT---GEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGSY 401 (514)
T ss_pred ehhhhhh---hhheeeeccEEeeEEEecCCcEEEEEcCC---ceEEEEecCCc--ceEEEEeecCccceeeeeecCCCce
Confidence 5555543 11111111223467899999988765543 38999999874 2222222222 223345567776
Q ss_pred EEEEecC
Q 004866 275 LYLFTDA 281 (726)
Q Consensus 275 l~~~t~~ 281 (726)
|+.-++.
T Consensus 402 lA~GS~~ 408 (514)
T KOG2055|consen 402 LATGSDS 408 (514)
T ss_pred EEeccCc
Confidence 6655553
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.2 Score=55.67 Aligned_cols=238 Identities=11% Similarity=0.041 Sum_probs=136.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+....|+--|.+||+....-| +|.||+..+...+.... ......++.||||+.|+-... ..+|.+++.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klg----QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e-----DgKVKvWn~ 379 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLG----QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE-----DGKVKVWNT 379 (893)
T ss_pred eeeEEEecccCCEEEEcCCccc----eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC-----CCcEEEEec
Confidence 3455678888999999876655 68888887765443322 346778999999997765432 246777787
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE--EeeeecCCEEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH--CIVEHHEGFLYLF 278 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~--~~~~~~g~~l~~~ 278 (726)
-++- =.++|.+.... ...+.|+.+|+.|+-.+-++ .+..+|+... ...+.++.+..-.. ..+++.|..+ +.
T Consensus 380 ~Sgf-C~vTFteHts~-Vt~v~f~~~g~~llssSLDG---tVRAwDlkRY-rNfRTft~P~p~QfscvavD~sGelV-~A 452 (893)
T KOG0291|consen 380 QSGF-CFVTFTEHTSG-VTAVQFTARGNVLLSSSLDG---TVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDPSGELV-CA 452 (893)
T ss_pred cCce-EEEEeccCCCc-eEEEEEEecCCEEEEeecCC---eEEeeeeccc-ceeeeecCCCceeeeEEEEcCCCCEE-Ee
Confidence 6552 24466665544 35688999999887655544 3566676543 23455544333222 2344445543 33
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE--EeeeCCEEEEEEEeCCeeEEEEEecCCCCCCccee
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVH 356 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~ 356 (726)
...+ .|.|+.+++. .++..+++.+.++ .+.. +.+.++ +++..+-+-. +++++.=...
T Consensus 453 G~~d-------~F~IfvWS~q----TGqllDiLsGHEg-PVs~l~f~~~~~-~LaS~SWDkT--VRiW~if~s~------ 511 (893)
T KOG0291|consen 453 GAQD-------SFEIFVWSVQ----TGQLLDILSGHEG-PVSGLSFSPDGS-LLASGSWDKT--VRIWDIFSSS------ 511 (893)
T ss_pred eccc-------eEEEEEEEee----cCeeeehhcCCCC-cceeeEEccccC-eEEeccccce--EEEEEeeccC------
Confidence 3322 4778888776 3555566655433 3443 555555 4444444433 3444432110
Q ss_pred ecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCC
Q 004866 357 LKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYG 408 (726)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~ 408 (726)
....+++.+..+- +..+.+++..+.+.-. -++|-.+|.+.+
T Consensus 512 ---~~vEtl~i~sdvl----~vsfrPdG~elaVaTl----dgqItf~d~~~~ 552 (893)
T KOG0291|consen 512 ---GTVETLEIRSDVL----AVSFRPDGKELAVATL----DGQITFFDIKEA 552 (893)
T ss_pred ---ceeeeEeecccee----EEEEcCCCCeEEEEEe----cceEEEEEhhhc
Confidence 0123455554433 3446788888766432 246666776544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.076 Score=53.46 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=72.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|+|+++.++... ..| .|+++|+.+++...... ......+.|+|+++.|+... ....|+++++
T Consensus 95 ~i~~~~~~~~~~~~~~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~~~~i~i~d~ 164 (289)
T cd00200 95 YVSSVAFSPDGRILSSSS-RDK----TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS-----QDGTIKLWDL 164 (289)
T ss_pred cEEEEEEcCCCCEEEEec-CCC----eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc-----CCCcEEEEEc
Confidence 456678999987766553 233 48999999776554322 33567899999977665542 1236888888
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+++... .+.... .....+.++|+++.|++... ...+.++|+..
T Consensus 165 ~~~~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~ 208 (289)
T cd00200 165 RTGKCVA-TLTGHT-GEVNSVAFSPDGEKLLSSSS---DGTIKLWDLST 208 (289)
T ss_pred cccccce-eEecCc-cccceEEECCCcCEEEEecC---CCcEEEEECCC
Confidence 7554211 222222 12345789999998887765 34688888876
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.16 Score=52.50 Aligned_cols=249 Identities=13% Similarity=-0.009 Sum_probs=128.5
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
++.|-|+.+.|.|+ |..|+ .|+-+++++|+.........+.....-.++..|+-.. ..+++.++.++..
T Consensus 29 gP~w~~~~~~L~w~-DI~~~---~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-------~g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWV-DILGG---RIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-------HGVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEE-eCCCC---eEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-------cccEEEeccCCce
Confidence 46799999999776 77775 4899999988765544445555666655555554442 1355555543332
Q ss_pred eeEEeeec-CC--ceEEEEEEcCCCcEEEEEEc-----CC---CceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCC
Q 004866 206 DALLLEES-NE--NVYVNIRHTKDFHFVCVHTF-----ST---TSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEG 273 (726)
Q Consensus 206 ~~lv~~~~-d~--~~~~~~~~s~Dg~~l~~~~~-----~~---~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~ 273 (726)
.+++.+.. +. ..+-+....|||++-+=... .. ....||+++..+ ...+.+...- -.-...++|||+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g--~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG--GVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC--CEEEeecCcEEecCceEECCCCC
Confidence 12222211 11 11224567888875433333 11 124699998744 3333333211 112346789999
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCCC-CCCC-CCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCC
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVDA-SFPS-RTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAG 351 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~ 351 (726)
.||+.-... .+|++++++. .... +.-..+..........++..+.+..+.+....+-..|.+++.+ +.
T Consensus 176 tly~aDT~~--------~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~- 245 (307)
T COG3386 176 TLYVADTPA--------NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK- 245 (307)
T ss_pred EEEEEeCCC--------CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc-
Confidence 888864432 4688887751 1111 1111122222334456677776554443444443577778765 21
Q ss_pred CcceeecccccccccCCC-ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004866 352 KGVVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 410 (726)
Q Consensus 352 ~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 410 (726)
. ...+.+|. .......+ ..+.+++.++.+....+ ....-|...|.+
T Consensus 246 ----l-----~~~i~lP~~~~t~~~Fg---G~~~~~L~iTs~~~~~~-~~~~~~~~~G~l 292 (307)
T COG3386 246 ----L-----LGEIKLPVKRPTNPAFG---GPDLNTLYITSARSGMS-RMLTADPLGGGL 292 (307)
T ss_pred ----E-----EEEEECCCCCCccceEe---CCCcCEEEEEecCCCCC-ccccccccCceE
Confidence 1 12455663 21111111 22357777777766665 322234434443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.034 Score=53.80 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=89.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..+.|.-||++||-.+. ++ .+.|++++.++.+..-. .+.+..+.|.|-..-++.+...+ ..|.++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~-dk----tv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d----k~ir~w 92 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF-DK----TVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD----KTIRIW 92 (313)
T ss_pred cceEEEEcccCceeeeccc-CC----ceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC----ceEEEE
Confidence 4556789999999998753 22 36788887774332211 12445688998877777775432 267778
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC---ceEEeeeecCCEE
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG---LAHCIVEHHEGFL 275 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~~~~~~~~g~~l 275 (726)
|+.+++....+ +...+. ..+.|||||+++++.... ..|-.+|..+ .+++...+. ..+..+. ..+.+
T Consensus 93 d~r~~k~~~~i-~~~~en--i~i~wsp~g~~~~~~~kd---D~it~id~r~----~~~~~~~~~~~e~ne~~w~-~~nd~ 161 (313)
T KOG1407|consen 93 DIRSGKCTARI-ETKGEN--INITWSPDGEYIAVGNKD---DRITFIDART----YKIVNEEQFKFEVNEISWN-NSNDL 161 (313)
T ss_pred EeccCcEEEEe-eccCcc--eEEEEcCCCCEEEEecCc---ccEEEEEecc----cceeehhcccceeeeeeec-CCCCE
Confidence 88776522222 112222 347899999999876654 3567777654 222222221 2233343 55668
Q ss_pred EEEecCcccCCCCCCeEEEEee
Q 004866 276 YLFTDAAKEGQEADNHYLLRCP 297 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~ 297 (726)
+|++|..+ ...|+.++
T Consensus 162 Fflt~GlG------~v~ILsyp 177 (313)
T KOG1407|consen 162 FFLTNGLG------CVEILSYP 177 (313)
T ss_pred EEEecCCc------eEEEEecc
Confidence 88888643 35566665
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.04 Score=54.79 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=79.4
Q ss_pred cEEEeecccccccCCceEEee---ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc--eec---cc--cccccceeEE
Q 004866 105 EQKLLDYNQEAERFGGYAYEE---LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LCS---KP--QAVRVSNIAW 174 (726)
Q Consensus 105 ~~~lld~n~~~~~~~~~~~~~---~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~--~~~---~~--~~~~~~~~~W 174 (726)
.-.|.|.+. .++.+ ...+. -.++.|.|=.+|.+. +++ .|.++|+..-. +.. +. ....+..+.|
T Consensus 123 tvrLWDlR~-~~cqg-~l~~~~~pi~AfDp~GLifA~~~---~~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~F 195 (311)
T KOG1446|consen 123 TVRLWDLRV-KKCQG-LLNLSGRPIAAFDPEGLIFALAN---GSE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEF 195 (311)
T ss_pred eEEeeEecC-CCCce-EEecCCCcceeECCCCcEEEEec---CCC--eEEEEEecccCCCCceeEccCCCCccceeeeEE
Confidence 445677662 23332 33332 247999997777764 232 48888876532 111 11 1336788999
Q ss_pred ecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeee-c-CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 175 AKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEE-S-NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 175 spDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~-~-d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
|||||.|+.+.. ...++++|.-++.. .-.+++ + ....-++..++|||++|+..+.++ .|++++++++
T Consensus 196 S~dGK~iLlsT~-----~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg---~i~vw~~~tg 264 (311)
T KOG1446|consen 196 SPDGKSILLSTN-----ASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG---TIHVWNLETG 264 (311)
T ss_pred cCCCCEEEEEeC-----CCcEEEEEccCCcE-eeeEeeccCCCCcceeEEECCCCcEEEEecCCC---cEEEEEcCCC
Confidence 999999999853 34688888766641 112221 1 222336788999999998665533 5788888774
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.037 Score=58.21 Aligned_cols=230 Identities=16% Similarity=0.123 Sum_probs=132.0
Q ss_pred EEEEEcCCCCCCCCccEEEEEcCCCCC---CCCccc-hHHHHHHHH-CCcEEEEE-ccCCCCC-CCC-------------
Q 004866 480 LTIIYSPKYKKENQNPGLLHGHGAYGE---LLDKRW-RSELKSLLD-RGWVVAFA-DVRGGGG-GGK------------- 539 (726)
Q Consensus 480 ~~l~~p~~~~~~~~~P~vl~~hGg~~~---~~~~~~-~~~~~~l~~-~G~~v~~~-d~RG~g~-~g~------------- 539 (726)
..|+.|++. ..+...+|++-||... ...+.+ ......+|. -|-+|+.. +++-+.- |..
T Consensus 52 l~I~vP~~~--~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIAy 129 (367)
T PF10142_consen 52 LTIYVPKND--KNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIAY 129 (367)
T ss_pred EEEEECCCC--CCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHHH
Confidence 457778762 2445688999988621 111222 334455555 35555543 3333321 111
Q ss_pred ccc---ccccccCCC-----CcHHHHHHHHHHHH-HcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC-Cccc
Q 004866 540 KWH---HDGRRTKKL-----NSIKDFISCARFLI-EKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV-PFLD 609 (726)
Q Consensus 540 ~~~---~~~~~~~~~-----~~~~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~-p~~d 609 (726)
.|. +.+...|-. ...--.+++++.+. ++...+.++-.|.|.|==|..+..++. ...|++|++..+ +++|
T Consensus 130 tW~~fl~~~d~~w~l~~PMtka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN 208 (367)
T PF10142_consen 130 TWRKFLETGDPEWPLHLPMTKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLN 208 (367)
T ss_pred HHHHHhccCCccchhhhhHHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCC
Confidence 121 111111110 01222233444443 334567799999999999999888877 567777776432 3444
Q ss_pred cccccc-----CC-CCCCChhhhcccCCC---CChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHH
Q 004866 610 ATNTLL-----YP-ILPLIAADYEEFGYP---GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVAR 680 (726)
Q Consensus 610 ~~~~~~-----~~-~~~~~~~~~~~~g~~---~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~ 680 (726)
+...+. +. ..+.....|...|-. ..++..+.+.-.+|+.+.++ ...|-++|.+..|+--.+..+.-++..
T Consensus 209 ~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~r-L~~PK~ii~atgDeFf~pD~~~~y~d~ 287 (367)
T PF10142_consen 209 MKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDR-LTMPKYIINATGDEFFVPDSSNFYYDK 287 (367)
T ss_pred cHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHh-cCccEEEEecCCCceeccCchHHHHhh
Confidence 433211 11 222222222222322 23455566677899999987 799999999999988888899999999
Q ss_pred HHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 681 VRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 681 L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
|...+ .+.+.|+++|+... ........+|+...
T Consensus 288 L~G~K------~lr~vPN~~H~~~~----~~~~~~l~~f~~~~ 320 (367)
T PF10142_consen 288 LPGEK------YLRYVPNAGHSLIG----SDVVQSLRAFYNRI 320 (367)
T ss_pred CCCCe------eEEeCCCCCcccch----HHHHHHHHHHHHHH
Confidence 98633 34447999998655 22333456777654
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.017 Score=60.66 Aligned_cols=207 Identities=13% Similarity=0.019 Sum_probs=119.0
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-HHHHHHHH-CCcEEEEEccCCCCC---CCCccccc------
Q 004866 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLD-RGWVVAFADVRGGGG---GGKKWHHD------ 544 (726)
Q Consensus 476 ~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~-~G~~v~~~d~RG~g~---~g~~~~~~------ 544 (726)
.++...+.|... +.--.||++=||+|+..+..|. ...+.+|+ -+.+|+.++|.|.+. +|..+.-.
T Consensus 20 sKLEyri~ydd~----Ke~kaIvfiI~GfG~dan~~~~d~~r~~iA~~fnvv~I~V~YHCf~~R~q~~A~~~~~~~D~~i 95 (403)
T PF11144_consen 20 SKLEYRISYDDE----KEIKAIVFIIPGFGADANSNYLDFMREYIAKKFNVVVISVNYHCFCNRPQYGAKFYFDDIDKEI 95 (403)
T ss_pred ceeeEEeecCCC----CCceEEEEEeCCcCCCcchHHHHHHHHHHHHhCCEEEEEeeeeheeeccccCchhcCCHHHHHH
Confidence 356666666543 2234677777788877665554 45677777 488888888888663 22211100
Q ss_pred --------------------------------------cc--------------------ccCCCCcHHHHHHHHHHHHH
Q 004866 545 --------------------------------------GR--------------------RTKKLNSIKDFISCARFLIE 566 (726)
Q Consensus 545 --------------------------------------~~--------------------~~~~~~~~~D~~~~~~~l~~ 566 (726)
+. .++|.-...|.+.|+.++++
T Consensus 96 Lk~~L~~i~i~~~~i~~~~~~~~~~~~L~~~I~~lK~~~~L~~d~kl~ls~tl~P~n~EYQN~GIMqAiD~INAl~~l~k 175 (403)
T PF11144_consen 96 LKKSLEKINIDSESINTYDNAEQIYELLNQNITELKEQGILPQDYKLNLSCTLIPPNGEYQNFGIMQAIDIINALLDLKK 175 (403)
T ss_pred HHHHHHHcCccccccccchhHHHHHHHHHHHHHHHHhcCCCCCCcEEeEEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 00 00122245677888888887
Q ss_pred cCCCC--CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccc-ccccCCCCC-----------------C----C
Q 004866 567 KEIVK--EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT-NTLLYPILP-----------------L----I 622 (726)
Q Consensus 567 ~~~~d--~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~-~~~~~~~~~-----------------~----~ 622 (726)
.-... .-++..+|+|+|||++..++.-.|.+|.+++-.++.+-.. .......+. + -
T Consensus 176 ~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~~~~~~~~i~~~~K 255 (403)
T PF11144_consen 176 IFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEFFNFKNIRIYCFDK 255 (403)
T ss_pred hhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccccccCCEEEEEEec
Confidence 62222 3489999999999999999999999999999776654321 111100000 0 0
Q ss_pred hhhhcccCCCC--ChhHHHHHHhcCcccccccCC---CCCe-EEEEecCCCCcChHHHHHHHHHHHhcCCC
Q 004866 623 AADYEEFGYPG--DIDDFHAIRNYSPYDNIQKDV---LYPA-VLVTSSFNTRFGVWEAAKWVARVRESTIY 687 (726)
Q Consensus 623 ~~~~~~~g~~~--~~~~~~~~~~~sp~~~i~~~~---~~P~-lli~g~~D~~V~~~~~~~~~~~L~~~~~~ 687 (726)
..|....+.|. .++ ...++..--..++.-+. +.|. +..|+..|+.+|+.+-.++++.|+++|-+
T Consensus 256 t~Wt~n~~S~~~Fs~~-~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfd 325 (403)
T PF11144_consen 256 TFWTRNKNSPYYFSKA-RYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNLGFD 325 (403)
T ss_pred cccccCCCCccccChH-HHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHcCCC
Confidence 00111112221 111 12233222222222111 2233 45688889999999999999999999965
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.01 Score=59.37 Aligned_cols=196 Identities=15% Similarity=0.119 Sum_probs=96.6
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHH-HCCcE--EEEEcc--CCCCCCCCccccc--------ccccCCCCc----HHH
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLL-DRGWV--VAFADV--RGGGGGGKKWHHD--------GRRTKKLNS----IKD 556 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~-~~G~~--v~~~d~--RG~g~~g~~~~~~--------~~~~~~~~~----~~D 556 (726)
.|+ |++||.-+. ..+|..+++.+. ++|.+ ++.+++ -|.=.+...|... ...++.... ..=
T Consensus 12 tPT-ifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w 88 (255)
T PF06028_consen 12 TPT-IFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW 88 (255)
T ss_dssp EEE-EEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred CcE-EEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence 444 577775443 356889999987 55542 444443 3432332222211 111111112 233
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC------CCceeEEEEeCCcccccccccCCCCCCChhhhcccC
Q 004866 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 630 (726)
Q Consensus 557 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g 630 (726)
+..++.+|.++--+ +++=++||||||......+..+ |.+=+-+...+|+-...... . .........-|
T Consensus 89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~-~---~~~~~~~~~~g 162 (255)
T PF06028_consen 89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMN-D---DQNQNDLNKNG 162 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCS-C----TTTT-CSTT-
T ss_pred HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccc-c---cchhhhhcccC
Confidence 45567777766434 7999999999999999888764 33444444444544433211 1 00001112234
Q ss_pred CCCC-hhHHHHHHhc-CcccccccCCCCCeEEEEec------CCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-EcCCCC
Q 004866 631 YPGD-IDDFHAIRNY-SPYDNIQKDVLYPAVLVTSS------FNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDI 701 (726)
Q Consensus 631 ~~~~-~~~~~~~~~~-sp~~~i~~~~~~P~lli~g~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH 701 (726)
|.. .+.+..+.+. . .++.+ ...+|-|.|. .|-+||...++.+..-++..... -....+ -+++.|
T Consensus 163 -p~~~~~~y~~l~~~~~--~~~p~--~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~--Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 163 -PKSMTPMYQDLLKNRR--KNFPK--NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKS--YQEKTVTGKDAQH 235 (255)
T ss_dssp -BSS--HHHHHHHHTHG--GGSTT--T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSE--EEEEEEESGGGSC
T ss_pred -CcccCHHHHHHHHHHH--hhCCC--CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCc--eEEEEEECCCCcc
Confidence 432 2334444432 1 23332 3446778887 67899998888887777765421 122333 345789
Q ss_pred CCCc
Q 004866 702 VEEN 705 (726)
Q Consensus 702 ~~~~ 705 (726)
+...
T Consensus 236 S~Lh 239 (255)
T PF06028_consen 236 SQLH 239 (255)
T ss_dssp CGGG
T ss_pred ccCC
Confidence 6444
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.15 Score=49.74 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=48.2
Q ss_pred EEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 122 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 122 ~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
-++..++|||.|++||-.+ .+. +..|+.-..++..-+.. +..+-.++||++|+.|+-.+.+ ..||+
T Consensus 62 rsVRsvAwsp~g~~La~aS-FD~----t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-----KSVWi 131 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASAS-FDA----TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD-----KSVWI 131 (312)
T ss_pred heeeeeeecCCCcEEEEee-ccc----eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC-----CeEEE
Confidence 3678889999999999875 333 34555555554333222 3356789999999999877543 35777
Q ss_pred EEcCCC
Q 004866 198 SIIGST 203 (726)
Q Consensus 198 ~~l~t~ 203 (726)
..+..+
T Consensus 132 We~ded 137 (312)
T KOG0645|consen 132 WEIDED 137 (312)
T ss_pred EEecCC
Confidence 776543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.088 Score=53.14 Aligned_cols=119 Identities=15% Similarity=0.032 Sum_probs=71.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.+..+++||||+.+|+.....+ ...|++....+.....+ .......+.|++||. ++..... .....+++ +..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~--~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~--~~~~~~~~-~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDG--GRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDG--SGGVRVVR-DSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCC--CCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcC--CCceEEEE-ecCC
Confidence 4567889999999999873222 45689888765443332 333677899999965 5444222 12223332 2222
Q ss_pred CC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC
Q 004866 203 TD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 248 (726)
Q Consensus 203 ~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 248 (726)
+. ....+-......-...+.+||||..+++........+||+.-+.
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 32 22222111111123568999999999999877777788887553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0071 Score=56.66 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=56.7
Q ss_pred HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 514 SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 514 ~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
.....|+++|+.|+-+|-+- -|.. .........|+...+++..++- ..+|+.++|.|+|+=+.-.+.++
T Consensus 20 ~~a~~l~~~G~~VvGvdsl~------Yfw~---~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~~~nr 88 (192)
T PF06057_consen 20 QIAEALAKQGVPVVGVDSLR------YFWS---ERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPFIYNR 88 (192)
T ss_pred HHHHHHHHCCCeEEEechHH------HHhh---hCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHHHHhh
Confidence 45688999999999999541 1111 1122345677777777666552 44899999999999999999998
Q ss_pred CCCc----eeEEEEeCC
Q 004866 594 CPDL----FRAVVLEVP 606 (726)
Q Consensus 594 ~p~~----f~a~v~~~p 606 (726)
.|.- ++.+++.+|
T Consensus 89 Lp~~~r~~v~~v~Ll~p 105 (192)
T PF06057_consen 89 LPAALRARVAQVVLLSP 105 (192)
T ss_pred CCHHHHhheeEEEEecc
Confidence 8874 444554444
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.33 Score=47.53 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=106.2
Q ss_pred EeeceeeCCC-CCEEEEEEeCCCCcEEEEEEEECCCCceec-ccc-----ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-----AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPD-G~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.+-.++|+|- |..||-. |. .-.|+++++.++.... .+. .-.+..++|+|.|+.|+-.++|.+- -|
T Consensus 16 r~W~~awhp~~g~ilAsc----g~-Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~---~I 87 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASC----GT-DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV---VI 87 (312)
T ss_pred cEEEEEeccCCceEEEee----cC-CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE---EE
Confidence 3555689998 7744332 22 2358999988654322 111 2256789999999988888776531 22
Q ss_pred EEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe---EEeeccCCceEEeeeec
Q 004866 196 YCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL---TLIWECEGLAHCIVEHH 271 (726)
Q Consensus 196 ~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~---~~l~~~~~~~~~~~~~~ 271 (726)
|. + ..+. +-.-+.+..+.. .=.++||++|.+|+..+..+ .+|++....+ .+. ..|.+...++.-.+.|.
T Consensus 88 w~-k-~~~efecv~~lEGHEnE-VK~Vaws~sG~~LATCSRDK---SVWiWe~ded-dEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 88 WK-K-EDGEFECVATLEGHENE-VKCVAWSASGNYLATCSRDK---SVWIWEIDED-DEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred ee-c-CCCceeEEeeeeccccc-eeEEEEcCCCCEEEEeeCCC---eEEEEEecCC-CcEEEEeeeccccccccEEEEcC
Confidence 22 2 2222 222222222221 22578999999998766543 4677766532 333 23444555555555566
Q ss_pred CCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCC-CceEE--EEeeeCCEEEEEEEeCCeeEEEE
Q 004866 272 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQ-GLVVE--DVDFCKTHMALILREGRTYRLCS 343 (726)
Q Consensus 272 g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~--~~~~~~~~lv~~~~~~g~~~l~~ 343 (726)
-..|++....+. ..++++-..+ ..|+.+..-+. ...+- .|+..+.+|+ ...+++.-.|++
T Consensus 161 t~dlL~S~SYDn------TIk~~~~~~d-----ddW~c~~tl~g~~~TVW~~~F~~~G~rl~-s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 161 TEDLLFSCSYDN------TIKVYRDEDD-----DDWECVQTLDGHENTVWSLAFDNIGSRLV-SCSDDGTVSIWR 223 (312)
T ss_pred CcceeEEeccCC------eEEEEeecCC-----CCeeEEEEecCccceEEEEEecCCCceEE-EecCCcceEeee
Confidence 666777776653 2566665433 56765432221 11222 2333344544 556667777776
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.072 Score=52.97 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=64.3
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
..+||+-|.+||.... +|. +.|+|+.|-..-.... .-.+.+++||+||+.|+-.+ +...+-++|+-.+
T Consensus 28 ~~~Fs~~G~~lAvGc~-nG~----vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-----~D~si~lwDl~~g 97 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCA-NGR----VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-----RDWSIKLWDLLKG 97 (405)
T ss_pred eEEeccCcceeeeecc-CCc----EEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-----CCceeEEEeccCC
Confidence 4579999999999974 563 8999998865333211 22467899999999886553 2346777888666
Q ss_pred C-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 204 D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 204 ~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
. ..++.|.. +-+ +..|.|-.+-.++.+.-.. .-++++..+
T Consensus 98 s~l~rirf~s--pv~--~~q~hp~k~n~~va~~~~~--sp~vi~~s~ 138 (405)
T KOG1273|consen 98 SPLKRIRFDS--PVW--GAQWHPRKRNKCVATIMEE--SPVVIDFSD 138 (405)
T ss_pred CceeEEEccC--ccc--eeeeccccCCeEEEEEecC--CcEEEEecC
Confidence 4 33344432 222 3455554443333322111 145566655
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.06 Score=54.21 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=83.7
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCC--cE--EEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDN--DY--FTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~--e~--~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.....+..+.|||+ |-++...... .. ..|+.++.+ ++...... ......++|+||++.||++... ..+|
T Consensus 85 ~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~----~~~i 158 (246)
T PF08450_consen 85 FNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF----NGRI 158 (246)
T ss_dssp TEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT----TTEE
T ss_pred cCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc----ccee
Confidence 44667788999999 4444322211 11 469999998 65444322 2344679999999999887432 3479
Q ss_pred EEEEcCCCC---c-eeEEeeecCC-ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCceEEee-
Q 004866 196 YCSIIGSTD---E-DALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGLAHCIV- 268 (726)
Q Consensus 196 ~~~~l~t~~---~-~~lv~~~~d~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~~~~~- 268 (726)
+++++.... . ..++...... .+.-++.+..+|+ |++... ....|++++.++ .....+.-. .......+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~G--~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPDG--KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETTS--CEEEEEE-SSSSEEEEEEE
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCCc--cEEEEEcCCCCCEEEEEEE
Confidence 999985332 2 2223232222 2345688888896 444443 335788888764 223333333 22223334
Q ss_pred eecCCEEEEEec
Q 004866 269 EHHEGFLYLFTD 280 (726)
Q Consensus 269 ~~~g~~l~~~t~ 280 (726)
.++.+.||+.|.
T Consensus 234 g~~~~~L~vTta 245 (246)
T PF08450_consen 234 GPDGKTLYVTTA 245 (246)
T ss_dssp STTSSEEEEEEB
T ss_pred CCCCCEEEEEeC
Confidence 256678888764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0011 Score=69.30 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=62.0
Q ss_pred CCCccEEEEEcCCCCCCCCccch-HHHHHHHH---CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWR-SELKSLLD---RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE 566 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~---~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 566 (726)
+.+.|++|++||..+......|. .....|.+ +++.|+++|+...... .+..+... -...-.-+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~n--~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVAN--TRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhhh--HHHHHHHHHHHHHHHHh
Confidence 45679999999976655233443 44555555 4899999998743221 11111100 00011222334666665
Q ss_pred cCCCCCCcEEEEEecccHHHHHHHHHcCCC--ceeEEEEeCC
Q 004866 567 KEIVKEHKLAGWGYSAGGLLVAAAINCCPD--LFRAVVLEVP 606 (726)
Q Consensus 567 ~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~p 606 (726)
...+++++|-|+|||.||++++.+...... .+..+...-|
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 555789999999999999999999987766 5566665444
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0069 Score=59.86 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHH--------HHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSL--------LDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE 566 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l--------~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 566 (726)
..||++||..|+. ..+......+ ....+.++..|+..... .++ +..-....+-+..+++.+.+
T Consensus 5 ~pVlFIhG~~Gs~--~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~~~----g~~l~~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGSY--KQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---AFH----GRTLQRQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCCH--hHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---ccc----cccHHHHHHHHHHHHHHHHH
Confidence 5688999854432 1222222211 11257788888765321 111 11101122334456666654
Q ss_pred c---CCCCCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEe
Q 004866 567 K---EIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLE 604 (726)
Q Consensus 567 ~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~ 604 (726)
. ....+.+|.++||||||.++-.++...+ +.++.+|..
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl 119 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITL 119 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEE
Confidence 3 2457899999999999998888776533 345555543
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.022 Score=51.49 Aligned_cols=52 Identities=21% Similarity=0.123 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
......++-++.++++. .|+ .++|+|.|.|||.+.++..++. +++++ ..|.+
T Consensus 40 h~p~~a~~ele~~i~~~-~~~-~p~ivGssLGGY~At~l~~~~G--irav~-~NPav 91 (191)
T COG3150 40 HDPQQALKELEKAVQEL-GDE-SPLIVGSSLGGYYATWLGFLCG--IRAVV-FNPAV 91 (191)
T ss_pred CCHHHHHHHHHHHHHHc-CCC-CceEEeecchHHHHHHHHHHhC--Chhhh-cCCCc
Confidence 35566677777777653 232 3899999999999999998752 34443 34443
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.035 Score=60.73 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=67.5
Q ss_pred CCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEE
Q 004866 103 KIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQAL 181 (726)
Q Consensus 103 ~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l 181 (726)
.++++++|+|.++.+ ++..+..-++|-|+++++|.....|.+.-.|-.+..+.|....... .-.+..++|.+|++.+
T Consensus 107 ~e~~~~ld~~~~~dd--~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~v~~~~~~~~~~~~~~~g~ 184 (712)
T KOG2237|consen 107 KEEEVFLDPNALGDD--GTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTVVIDVKFSGPVWTHDGKGV 184 (712)
T ss_pred cccceecCCccCCCC--ceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCccceeeeeeccCCceeeccCCce
Confidence 678999999999877 5778888899999999999998888887777777777776554333 5577889999999999
Q ss_pred EEEEec
Q 004866 182 IYVVTD 187 (726)
Q Consensus 182 ~y~~~~ 187 (726)
+|.+..
T Consensus 185 ~y~~w~ 190 (712)
T KOG2237|consen 185 SYLAWA 190 (712)
T ss_pred Eeeeec
Confidence 887653
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.012 Score=61.43 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=61.5
Q ss_pred hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHH-----HHHHHHHHcCCCCCCcEEEEEecccHHHH
Q 004866 513 RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI-----SCARFLIEKEIVKEHKLAGWGYSAGGLLV 587 (726)
Q Consensus 513 ~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~-----~~~~~l~~~~~~d~~ri~i~G~S~GG~l~ 587 (726)
...+..|+++|..|+.++.|+-...-. ...++|.+ .|++.+.+. +-.++|=+.|+|.||.+.
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd~~~~-----------~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~ 195 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPDASLA-----------AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLL 195 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCchHhhh-----------hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHH
Confidence 456789999999999999987553211 23455554 555555543 344789999999999999
Q ss_pred HHHHHcCCCc-eeEEEEeCCccccc
Q 004866 588 AAAINCCPDL-FRAVVLEVPFLDAT 611 (726)
Q Consensus 588 ~~~~~~~p~~-f~a~v~~~p~~d~~ 611 (726)
+.++..++.. ++.+......+|..
T Consensus 196 ~~ala~~~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 196 AAALALMAAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred HHHHHhhhhcccccceeeecchhhc
Confidence 9888877776 77777666555543
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=69.41 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=63.0
Q ss_pred ccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHH
Q 004866 510 KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 589 (726)
Q Consensus 510 ~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~ 589 (726)
..|...+..|.+.||.+ ..|.+|.| ..|+.... ....++++.+.++.+.++ ....++.|+||||||.++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g~g---YDwR~~~~---~~~~~~~Lk~lIe~~~~~--~g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFGFG---YDFRQSNR---LPETMDGLKKKLETVYKA--SGGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCcccCC---CCcccccc---HHHHHHHHHHHHHHHHHH--cCCCCEEEEEECHhHHHHHH
Confidence 45778889999999976 67999866 34554211 122456666666666543 22368999999999999999
Q ss_pred HHHcCCCc----eeEEEEeCCcc
Q 004866 590 AINCCPDL----FRAVVLEVPFL 608 (726)
Q Consensus 590 ~~~~~p~~----f~a~v~~~p~~ 608 (726)
.+..+|+. ++..|+.++..
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCCC
Confidence 88888874 46666665543
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0016 Score=68.39 Aligned_cols=112 Identities=19% Similarity=0.098 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCCCCccch-HHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC---C
Q 004866 496 GLLHGHGAYGELLDKRWR-SELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI---V 570 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~-~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~---~ 570 (726)
++|++|||--.+-.++.. .....|+. ...+|+.+|||=+. +|--+.-......|.-..-|..-|++|+.++-. -
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFGG 215 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFGG 215 (601)
T ss_pred EEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhCC
Confidence 889999963222222222 12345555 46888999999543 444333222333444567899999999987622 2
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEeCCccc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLD 609 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d 609 (726)
||+||.++|.|+|+..+.+=+. .| .+|+-+|+++|-.+
T Consensus 216 np~~vTLFGESAGaASv~aHLl-sP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 216 NPSRVTLFGESAGAASVVAHLL-SPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CcceEEEeccccchhhhhheec-CCCchhhHHHHHhhcCCCC
Confidence 9999999999999866654333 24 38999999998765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.51 Score=48.65 Aligned_cols=163 Identities=10% Similarity=0.119 Sum_probs=80.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
...+++|.|||++.+. +..- ...+-|+|++.++.+.... .+...-+-|.++ .|+-...| ..+..+.++.
T Consensus 97 ~~~~~ls~dgk~~~V~-N~TP--a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~--~F~~lC~D-----Gsl~~v~Ld~ 166 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQ-NFTP--ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR--GFSMLCGD-----GSLLTVTLDA 166 (342)
T ss_dssp GGGEEE-TTSSEEEEE-EESS--SEEEEEEETTTTEEEEEEEGTSEEEEEEEETT--EEEEEETT-----SCEEEEEETS
T ss_pred ccceEEccCCcEEEEE-ccCC--CCeEEEEECCCCceeeeecCCCEEEEEecCCC--ceEEEecC-----CceEEEEECC
Confidence 3456899999998654 4332 2459999999998876543 333333344433 22211111 1233334432
Q ss_pred CC-c---eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeE-Ee---ecc--C-----CceE-E
Q 004866 203 TD-E---DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT-LI---WEC--E-----GLAH-C 266 (726)
Q Consensus 203 ~~-~---~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~-~l---~~~--~-----~~~~-~ 266 (726)
.. . ..-+|...+++.|....++.++..++|.+..+ .||.+|+.+...++. +. +.. . ++.+ .
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G---~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG---NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS---EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC---EEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 21 1 11244444444455566677776667766544 689999877432211 11 111 0 1111 2
Q ss_pred eeeecCCEEEEEecCcccC-CCCCCeEEEEeeCC
Q 004866 267 IVEHHEGFLYLFTDAAKEG-QEADNHYLLRCPVD 299 (726)
Q Consensus 267 ~~~~~g~~l~~~t~~~~~~-~~~~~~~l~~~~~~ 299 (726)
.+.+..++||++-+.+.+. .......|+.+|+.
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 2334567888887643322 11223678888886
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0094 Score=68.16 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=75.0
Q ss_pred CCEEEEEEeCCCCcEEEEEEEECCCCceecc-cc-ccccceeEEecCCCEEEE-EEecCCCCCceEEEEEcCCCCceeE-
Q 004866 133 HKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-AVRVSNIAWAKDGQALIY-VVTDQNKRPYQIYCSIIGSTDEDAL- 208 (726)
Q Consensus 133 G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-~~~~~~~~WspDg~~l~y-~~~~~~~~~~~l~~~~l~t~~~~~l- 208 (726)
..+|||..+..| .|.++|.+++....+ .. ...+..+.|||||+.|+| +......+...||+.+|.+.....+
T Consensus 318 ~tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vk 393 (912)
T TIGR02171 318 KAKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVK 393 (912)
T ss_pred eeeEEEEEcCCC----eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceE
Confidence 356999987555 699999998876654 33 445678999999999999 6554423456799999987653222
Q ss_pred -EeeecC-CceEEEEEEcCCCcEEEEEEcCCCc---------eEEEEEeCCCCC-CCeEEeecc
Q 004866 209 -LLEESN-ENVYVNIRHTKDFHFVCVHTFSTTS---------SKVFLINAADPF-SGLTLIWEC 260 (726)
Q Consensus 209 -v~~~~d-~~~~~~~~~s~Dg~~l~~~~~~~~~---------~~l~~~d~~~~~-~~~~~l~~~ 260 (726)
-.+... +++ .+.++|..+++...+.+. ..-|.+....++ ++++.|...
T Consensus 394 l~ve~aaiprw----rv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dg 453 (912)
T TIGR02171 394 LPVENAAIPRW----RVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDG 453 (912)
T ss_pred eecccccccce----EecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhcc
Confidence 112111 222 347778776554433221 235777766543 556666543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.023 Score=63.98 Aligned_cols=114 Identities=13% Similarity=0.220 Sum_probs=71.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc---ccc-------cccceeEEecCCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK---PQA-------VRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~---~~~-------~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+..+.++|.|+.||.+. .+| .+++||+.++..... ... ..+..++|+|||..|++...+.
T Consensus 140 pVl~l~~~p~~~fLAvss-~dG----~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---- 210 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSS-CDG----KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---- 210 (933)
T ss_pred ceeeeeEcCCCCEEEEEe-cCc----eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----
Confidence 567788999999999985 566 499999999864321 111 1245689999977777664432
Q ss_pred ceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 193 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.|..++..+-...-.+-......-+..++|||.|+||+-..- ..+|-++|.++
T Consensus 211 -~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~---~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 -TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL---DGQILVWNVDT 263 (933)
T ss_pred -eEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc---CCcEEEEeccc
Confidence 455555544321111111111222567899999999975443 34677777764
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0094 Score=65.60 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=77.7
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc----------------hHHHHHHHHCCcEEEEEc-cCCCCCC
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW----------------RSELKSLLDRGWVVAFAD-VRGGGGG 537 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~----------------~~~~~~l~~~G~~v~~~d-~RG~g~~ 537 (726)
+..+..|++..++. ....|+||+++||||.+..... ...-..|.+.+ .++.+| .+|.|-+
T Consensus 60 ~~~lFyw~~~s~~~--~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~-~~l~iDqP~G~G~S 136 (462)
T PTZ00472 60 DKHYFYWAFGPRNG--NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEA-YVIYVDQPAGVGFS 136 (462)
T ss_pred CceEEEEEEEcCCC--CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccccc-CeEEEeCCCCcCcc
Confidence 55777777766542 3457999999999996522111 00112455554 456666 5676632
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHcC---C-------CceeEEEEeCC
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCC---P-------DLFRAVVLEVP 606 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~---p-------~~f~a~v~~~p 606 (726)
-.... .....-....+|+...++.+.++ +.....++.|+|+||||..+..++.+- . =-+++++...|
T Consensus 137 ~~~~~--~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 137 YADKA--DYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred cCCCC--CCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 11100 00111123456776666655433 333457999999999998886666431 0 13788888888
Q ss_pred ccccc
Q 004866 607 FLDAT 611 (726)
Q Consensus 607 ~~d~~ 611 (726)
++|..
T Consensus 215 ~~dp~ 219 (462)
T PTZ00472 215 LTDPY 219 (462)
T ss_pred ccChh
Confidence 88764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.64 Score=46.52 Aligned_cols=248 Identities=12% Similarity=0.023 Sum_probs=124.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.+|+||..|+-+. .+. .|.++|..+|..+.... .-++.-+.|......+.+... .....|...++
T Consensus 16 ~i~sl~fs~~G~~litss-~dD----sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---k~d~tIryLsl 87 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS-EDD----SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---KEDDTIRYLSL 87 (311)
T ss_pred ceeEEEecCCCCEEEEec-CCC----eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---CCCCceEEEEe
Confidence 456678999999998753 222 48999999998766433 335566788888888888754 22346777777
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEec
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~ 280 (726)
-+.+ -.-.|..... -..++..+|-+... +++.. ...|+++|+.... .+-+..-........+|.|-.|++..+
T Consensus 88 ~dNk-ylRYF~GH~~-~V~sL~~sP~~d~F-lS~S~--D~tvrLWDlR~~~--cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 88 HDNK-YLRYFPGHKK-RVNSLSVSPKDDTF-LSSSL--DKTVRLWDLRVKK--CQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred ecCc-eEEEcCCCCc-eEEEEEecCCCCeE-Eeccc--CCeEEeeEecCCC--CceEEecCCCcceeECCCCcEEEEecC
Confidence 6543 1112322222 23467778877544 33332 2357777876532 111211122223344555544433332
Q ss_pred CcccCCCCCCeEEEEeeCCCCCCCCCceEEeecC-CCceEE--EEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceee
Q 004866 281 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDD-QGLVVE--DVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHL 357 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~--~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~ 357 (726)
.. . .+|| |+. .-+++.++.+.... ...... .++..++.|++..+.+ .++++|--.|.-+ ..+
T Consensus 161 ~~--~-----IkLy--D~R-s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G~~~--~tf 225 (311)
T KOG1446|consen 161 SE--L-----IKLY--DLR-SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDGTVK--STF 225 (311)
T ss_pred CC--e-----EEEE--Eec-ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCCcEe--eeE
Confidence 21 1 3343 333 33344444433221 122222 3455567777766543 3455553222100 000
Q ss_pred cccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEE
Q 004866 358 KELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNI 412 (726)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~ 412 (726)
.+.+....+|. +..+.+|+..+.... + =+.|+.|+++++....
T Consensus 226 -s~~~~~~~~~~-------~a~ftPds~Fvl~gs-~---dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 226 -SGYPNAGNLPL-------SATFTPDSKFVLSGS-D---DGTIHVWNLETGKKVA 268 (311)
T ss_pred -eeccCCCCcce-------eEEECCCCcEEEEec-C---CCcEEEEEcCCCcEee
Confidence 01111112221 223456776543322 2 2478888888886543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0017 Score=44.33 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=20.2
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSV 152 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v 152 (726)
..+.|||||++|+|++++.+...++||+
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4578999999999999887333567775
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.027 Score=64.63 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=81.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC----------Cceeccc----------cccccceeEEecCCCEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS----------GALCSKP----------QAVRVSNIAWAKDGQALI 182 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t----------g~~~~~~----------~~~~~~~~~WspDg~~l~ 182 (726)
.+..++|||||++||..+|. ..|.||+-+. |...... -...+.++.|+||++.|+
T Consensus 71 sv~CVR~S~dG~~lAsGSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ceeEEEECCCCCeEeeccCc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 67778999999999997653 3567777662 1111100 023567899999998776
Q ss_pred EEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC
Q 004866 183 YVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG 262 (726)
Q Consensus 183 y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 262 (726)
-...| +.|.+++..+.. ...+.. ......-++.|.|-|||++-.+.+. +-.+|. +.+ -+-.+.++...+
T Consensus 146 S~s~D-----nsViiwn~~tF~-~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDr-tikvwr--t~d-w~i~k~It~pf~ 214 (942)
T KOG0973|consen 146 SVSLD-----NSVIIWNAKTFE-LLKVLR-GHQSLVKGVSWDPIGKYFASQSDDR-TLKVWR--TSD-WGIEKSITKPFE 214 (942)
T ss_pred Eeccc-----ceEEEEccccce-eeeeee-cccccccceEECCccCeeeeecCCc-eEEEEE--ccc-ceeeEeeccchh
Confidence 66444 356666665543 112222 1222334789999999988655543 234444 222 012234444433
Q ss_pred c-------eEEeeeecCCEEEEEe
Q 004866 263 L-------AHCIVEHHEGFLYLFT 279 (726)
Q Consensus 263 ~-------~~~~~~~~g~~l~~~t 279 (726)
. ....|+|||.+|....
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred hCCCcceeeecccCCCcCeecchh
Confidence 1 1346789998776543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.33 Score=52.06 Aligned_cols=254 Identities=14% Similarity=0.120 Sum_probs=128.2
Q ss_pred eeceeeCCCCCEEE-EEEe-----CCCCcEEEEEEEECCCCceecccc-----ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 124 EELSEVSPDHKFLA-YTMY-----DKDNDYFTLSVRNLNSGALCSKPQ-----AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 124 ~~~~~~SPDG~~la-~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~-----~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
+..+.+||..+||+ |+.. ...+|.-+|.|||+.||....... .....-+.||.|+++++-...+
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~----- 326 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN----- 326 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-----
Confidence 44557899999876 3321 122355789999999998665321 1234568999999977654321
Q ss_pred ceEEEEEcCCCCceeEEeeecC--CceEEEEEEcCCCcEEEEEEcCCCc--eEEEEEeCCCCCCCeE--EeeccCCceEE
Q 004866 193 YQIYCSIIGSTDEDALLLEESN--ENVYVNIRHTKDFHFVCVHTFSTTS--SKVFLINAADPFSGLT--LIWECEGLAHC 266 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv~~~~d--~~~~~~~~~s~Dg~~l~~~~~~~~~--~~l~~~d~~~~~~~~~--~l~~~~~~~~~ 266 (726)
.|-++...+ -.+++... ..-.-+.+|||-+..|++-+..... .++-++.+-+.. .++ .+. ...++..
T Consensus 327 -sisIyEtps----f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlf-nVsDckL 399 (698)
T KOG2314|consen 327 -SISIYETPS----FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLF-NVSDCKL 399 (698)
T ss_pred -eEEEEecCc----eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccce-eeeccEE
Confidence 233333211 01111000 0001145899999999887654432 456666654421 111 111 1223455
Q ss_pred eeeecCCEEEEEecCcccC---CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceE-EEEeeeCCEEEEEEEeCCeeEEE
Q 004866 267 IVEHHEGFLYLFTDAAKEG---QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVV-EDVDFCKTHMALILREGRTYRLC 342 (726)
Q Consensus 267 ~~~~~g~~l~~~t~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l-~~~~~~~~~lv~~~~~~g~~~l~ 342 (726)
.|-..|+.|.+.+++.... ..-.|+.|++++-. +. ...+++-. +..| -++.+.+++..+.........+.
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK-dI----pve~velk-e~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK-DI----PVEVVELK-ESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeecc-CC----Cceeeecc-hheeeeeeccCCCeEEEEEcccccccee
Confidence 6667899998888753211 12236777777643 11 11222221 2222 23444566655555544455555
Q ss_pred EEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCC
Q 004866 343 SVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSY 407 (726)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~ 407 (726)
.+.+.+...+ . .....++...+. ...+++.+..+++..-. .+-+.++-||+.-
T Consensus 474 fY~~e~~~~~----~----~lVk~~dk~~~N---~vfwsPkG~fvvva~l~-s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 474 FYAVETNIKK----P----SLVKELDKKFAN---TVFWSPKGRFVVVAALV-SRRGDLEFYDTDY 526 (698)
T ss_pred EEEeecCCCc----h----hhhhhhcccccc---eEEEcCCCcEEEEEEec-ccccceEEEecch
Confidence 5554422111 0 012234443221 12345666655443211 2667888888753
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.028 Score=57.87 Aligned_cols=191 Identities=13% Similarity=0.014 Sum_probs=105.9
Q ss_pred EEeeceeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 122 AYEELSEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 122 ~~~~~~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
..++++.|+|. +.-||-. ..+| .+.+|++++..++.... ...++.++|.|+|+.|.-+.+|.+++ |
T Consensus 218 ~~v~~~~fhP~~~~~~lat~-s~Dg----tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR---l-- 287 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATA-SADG----TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR---L-- 287 (459)
T ss_pred cceeeEEEccCCCccceeee-ccCC----ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh---h--
Confidence 36888899998 4456544 3455 38899998866655322 44788999999999998888887653 3
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc--eEEeeeecCCEE
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL--AHCIVEHHEGFL 275 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~--~~~~~~~~g~~l 275 (726)
+|+.++. .+++.|....-..+++|.+||.-++ +.. -.+--.++|+.++. -..+...--+ ....++|.|-++
T Consensus 288 WD~~tk~--ElL~QEGHs~~v~~iaf~~DGSL~~-tGG--lD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsPNGy~l 360 (459)
T KOG0272|consen 288 WDLETKS--ELLLQEGHSKGVFSIAFQPDGSLAA-TGG--LDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSPNGYHL 360 (459)
T ss_pred cccccch--hhHhhcccccccceeEecCCCceee-ccC--ccchhheeecccCc--EEEEecccccceeeEeECCCceEE
Confidence 4666653 3444444433334689999998654 222 12223445776642 2222222212 223456766544
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE--EeeeCCEEEEEEEeCCeeEEEE
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCS 343 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~ 343 (726)
+--+. +. ..+|+.+... .. .-++|.. ...+.. +.+..++.+++...+...+|+.
T Consensus 361 ATgs~-Dn------t~kVWDLR~r-----~~-ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 361 ATGSS-DN------TCKVWDLRMR-----SE-LYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred eecCC-CC------cEEEeeeccc-----cc-ceecccc-cchhhheEecccCCeEEEEcccCcceeeec
Confidence 32221 11 2455554432 11 1123322 122333 3333567777777777776654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.054 Score=52.99 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+....+||||...|+. ++.-.+++|||+.++.+.... ...+.+++|+|.-=+|.-.. . ..|.++++.
T Consensus 194 ~v~t~~vSpDGslcasG-----gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~-----~sIkIwdl~ 262 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASG-----GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-A-----TSIKIWDLE 262 (315)
T ss_pred cEEEEEECCCCCEEecC-----CCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-C-----CceEEEecc
Confidence 46677899999999883 333468999999998765322 44678899999865554432 1 236667776
Q ss_pred CCC-ceeEEeee------cCCceEEEEEEcCCCcEEEE
Q 004866 202 STD-EDALLLEE------SNENVYVNIRHTKDFHFVCV 232 (726)
Q Consensus 202 t~~-~~~lv~~~------~d~~~~~~~~~s~Dg~~l~~ 232 (726)
++. .+.+-.+. ...+..++++||+||..|+-
T Consensus 263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 654 22221111 12345678999999999863
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.035 Score=63.75 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=72.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+.++.||||+.+||-.. .+ ..|.|||..+.+.+.... ...+.++.|.|=|++|+-...| +.-+||+ +
T Consensus 131 DV~Dv~Wsp~~~~lvS~s-~D----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD---rtikvwr--t 200 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVS-LD----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD---RTLKVWR--T 200 (942)
T ss_pred ccceeccCCCccEEEEec-cc----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC---ceEEEEE--c
Confidence 577889999999987653 22 358999999986555433 3457789999999988776443 3345555 3
Q ss_pred CCCCceeEE---ee-ecCCceEEEEEEcCCCcEEEEEEc-CCCceEEEEEeC
Q 004866 201 GSTDEDALL---LE-ESNENVYVNIRHTKDFHFVCVHTF-STTSSKVFLINA 247 (726)
Q Consensus 201 ~t~~~~~lv---~~-~~d~~~~~~~~~s~Dg~~l~~~~~-~~~~~~l~~~d~ 247 (726)
.+-+....+ |+ .+...+|..++|||||+||+.... .+..+-+-+++-
T Consensus 201 ~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 201 SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 221111112 22 223457788999999999975432 223333444443
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=55.88 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEEccCCCC-CCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 496 GLLHGHGAYGELL--DKRWRSELKSLLDRGWVVAFADVRGGG-GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 496 ~vl~~hGg~~~~~--~~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
.||++ ||-+... .+.-.+...+|.+.+|..+.+..|-+- +||.- .-..+.+|+..++++++-.++.
T Consensus 38 ~vvfi-GGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~fS-- 106 (299)
T KOG4840|consen 38 KVVFI-GGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGFS-- 106 (299)
T ss_pred EEEEE-cccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCcc--
Confidence 45555 4444332 222345567888899999999988654 34322 1124789999999988876654
Q ss_pred CcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCccccc
Q 004866 573 HKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~~ 611 (726)
..|.++|||-|.-=.+..+++ .|..++|+|+++|+.|..
T Consensus 107 t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 499999999999777777743 356789999999999865
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.38 Score=53.24 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=80.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc--eecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~--~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+....+||||+.++.+. ..+ .+.++++.+++ ...... ...+..+.|||||+.|+=.. + ...|+++
T Consensus 161 sv~~~~fs~~g~~l~~~~-~~~----~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s-~----D~tiriw 230 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAAS-SDG----LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS-D----DKTLRIW 230 (456)
T ss_pred ceEEEEEcCCCCeEEEcc-CCC----cEEEeecccccchhhccccccccceeeeEECCCCcEEEEec-C----CceEEEe
Confidence 345578999999988874 333 37888887666 222211 33568899999999554332 2 2478888
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe-EEeeccCCceE-EeeeecCCEEE
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL-TLIWECEGLAH-CIVEHHEGFLY 276 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~~-~~~~~~g~~l~ 276 (726)
++.....-..++. ....+...+.++|+|+. +++...+. .+.++|+.+ ++. +.+....+.+. ..++++|..|+
T Consensus 231 d~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~-i~Sgs~D~--tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 231 DLKDDGRNLKTLK-GHSTYVTSVAFSPDGNL-LVSGSDDG--TVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred eccCCCeEEEEec-CCCCceEEEEecCCCCE-EEEecCCC--cEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEE
Confidence 8833322222332 22233456889999954 44444333 466677776 333 33444444433 34556666554
Q ss_pred EE
Q 004866 277 LF 278 (726)
Q Consensus 277 ~~ 278 (726)
..
T Consensus 305 s~ 306 (456)
T KOG0266|consen 305 SA 306 (456)
T ss_pred Ec
Confidence 44
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0015 Score=58.78 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc
Q 004866 559 SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT 613 (726)
Q Consensus 559 ~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 613 (726)
+--+|++++.. |.+..+.|.||||++++....++|++|..+|+.+|++|...+
T Consensus 89 AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardf 141 (227)
T COG4947 89 AYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDF 141 (227)
T ss_pred HHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHh
Confidence 44456776543 477889999999999999999999999999999999997643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.018 Score=63.80 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=76.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+...+|.|+..|+|-. +..-++++||+.+|..+++.. ...+..+++||+|++|+-.. ....|.++|+
T Consensus 537 DV~cv~FHPNs~Y~aTG-----SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-----ed~~I~iWDl 606 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATG-----SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-----EDGLIKIWDL 606 (707)
T ss_pred ccceEEECCcccccccC-----CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-----cCCcEEEEEc
Confidence 45567899999988654 223469999999998877643 44678899999999886542 2346888999
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+++..-....+..+. ..++++|.||..|+... ..+.|.++|+..
T Consensus 607 ~~~~~v~~l~~Ht~t--i~SlsFS~dg~vLasgg---~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGT--IYSLSFSRDGNVLASGG---ADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcccCc--eeEEEEecCCCEEEecC---CCCeEEEEEchh
Confidence 887521112222222 23678899999886433 345666778754
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.074 Score=53.43 Aligned_cols=233 Identities=15% Similarity=0.159 Sum_probs=111.0
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC-CCCCC--CCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG-AYGEL--LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hG-g~~~~--~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
+++.-| .|++++. + .++++.|+||-.|- |.... ...-|...........++++=+|.+|+.+-...+-
T Consensus 4 v~t~~G-~v~V~v~---G-~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p---- 74 (283)
T PF03096_consen 4 VETPYG-SVHVTVQ---G-DPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLP---- 74 (283)
T ss_dssp EEETTE-EEEEEEE---S-S--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT---------
T ss_pred eccCce-EEEEEEE---e-cCCCCCceEEEeccccccchHHHHHHhcchhHHHHhhceEEEEEeCCCCCCCccccc----
Confidence 445556 5666553 2 23346899999997 32211 11112222333444569999999999986322222
Q ss_pred ccCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc-------c---
Q 004866 547 RTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL-------L--- 615 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-------~--- 615 (726)
......+++++.+.+..++++ +. +.+..+|--+|+++-+..|..+|+++.+.|+..|...-..++ .
T Consensus 75 ~~y~yPsmd~LAe~l~~Vl~~f~l---k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~ 151 (283)
T PF03096_consen 75 EGYQYPSMDQLAEMLPEVLDHFGL---KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWL 151 (283)
T ss_dssp TT-----HHHHHCTHHHHHHHHT------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH---
T ss_pred ccccccCHHHHHHHHHHHHHhCCc---cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccc
Confidence 122234667766655555544 32 678999999999999999999999999999988865432211 0
Q ss_pred --CCCCCCChhhh---cccCCCC---ChhH--------------------HHHHHhcCcccccccCCCCCeEEEEecCCC
Q 004866 616 --YPILPLIAADY---EEFGYPG---DIDD--------------------FHAIRNYSPYDNIQKDVLYPAVLVTSSFNT 667 (726)
Q Consensus 616 --~~~~~~~~~~~---~~~g~~~---~~~~--------------------~~~~~~~sp~~~i~~~~~~P~lli~g~~D~ 667 (726)
.....-....+ ..||... +.+. .+.+.++..+....+...+|+|+++|..-+
T Consensus 152 L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp 231 (283)
T PF03096_consen 152 LYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSP 231 (283)
T ss_dssp ----CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTST
T ss_pred ccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCc
Confidence 00000000011 1122110 0011 111222233332223367899999998877
Q ss_pred CcChHHHHHHHHHHHhcCCCCCCCcEEE-EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 668 RFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 668 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
...++.++..+|-..+ .-++ ..++|= .-..++-..++..+..+.+=+
T Consensus 232 --~~~~vv~~ns~Ldp~~------ttllkv~dcGg--lV~eEqP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 232 --HVDDVVEMNSKLDPTK------TTLLKVADCGG--LVLEEQPGKLAEAFKLFLQGM 279 (283)
T ss_dssp --THHHHHHHHHHS-CCC------EEEEEETT-TT---HHHH-HHHHHHHHHHHHHHT
T ss_pred --chhhHHHHHhhcCccc------ceEEEecccCC--cccccCcHHHHHHHHHHHccC
Confidence 4467888999986543 3344 556543 223344455555555554443
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.017 Score=62.98 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=71.7
Q ss_pred EEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 122 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 122 ~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+.+..+..||+|+.||-+.....-+...|++++..+=.... +.. .-.+..++|||||++|+-...|+. ..|| .
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt---~sl~--~ 600 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT---VSLY--E 600 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce---EEee--e
Confidence 57888999999999998766556677889999976643333 111 225678999999999987765543 2333 3
Q ss_pred cCCCCceeEEe--eecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEE
Q 004866 200 IGSTDEDALLL--EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 245 (726)
Q Consensus 200 l~t~~~~~lv~--~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 245 (726)
......+..-| .....+..-+..|+||+++ +++++++-.-.+|..
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEE 647 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEec
Confidence 22211111111 1112223346789999999 344444434444544
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.033 Score=52.26 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCCccEEEEEcCCCCCCCCccc---------------hHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 481 TIIYSPKYKKENQNPGLLHGHGAYGELLDKRW---------------RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 481 ~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~---------------~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
+|+..++. ...+..++|.+||+--. -...| -+.+..-.+.||-|++.|.-- .+.|++.-
T Consensus 89 FiF~s~~~-lt~~~kLlVLIHGSGvV-rAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~----~~kfye~k 162 (297)
T KOG3967|consen 89 FIFMSEDA-LTNPQKLLVLIHGSGVV-RAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNR----ERKFYEKK 162 (297)
T ss_pred eEEEChhH-hcCccceEEEEecCceE-ecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCch----hhhhhhcc
Confidence 34554443 23445689999995211 01111 244566667899999988652 22344321
Q ss_pred ccc--CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC
Q 004866 546 RRT--KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD 596 (726)
Q Consensus 546 ~~~--~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~ 596 (726)
... .-...++-+...-.+++. ...+..++++-||+||++++-++.+.|+
T Consensus 163 ~np~kyirt~veh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 163 RNPQKYIRTPVEHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred cCcchhccchHHHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCC
Confidence 111 122456666666666663 3467899999999999999999999886
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.79 Score=54.79 Aligned_cols=195 Identities=11% Similarity=0.012 Sum_probs=98.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc----ee--c---cccccccceeEEecCCCEEEEEEecCCCCCc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA----LC--S---KPQAVRVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~----~~--~---~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
.+..++|||||++||-+. .+| .|.|||+.+.. .. + .........+.|+|....++.+... ..
T Consensus 485 ~V~~i~fs~dg~~latgg-~D~----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~----Dg 555 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG-VNK----KIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF----EG 555 (793)
T ss_pred cEEEEEECCCCCEEEEEe-CCC----EEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeC----CC
Confidence 356678999999988764 233 48999976421 10 1 1112245678998864333444322 23
Q ss_pred eEEEEEcCCCCceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeee-ec
Q 004866 194 QIYCSIIGSTDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVE-HH 271 (726)
Q Consensus 194 ~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~-~~ 271 (726)
.|.++|+.+++. ...+..... ....+.|+| |+..|+..+.+ ..|.++|+.++. ....+..........+. ++
T Consensus 556 ~v~lWd~~~~~~-~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~~~~~-~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 556 VVQVWDVARSQL-VTEMKEHEK-RVWSIDYSSADPTLLASGSDD---GSVKLWSINQGV-SIGTIKTKANICCVQFPSES 629 (793)
T ss_pred eEEEEECCCCeE-EEEecCCCC-CEEEEEEcCCCCCEEEEEcCC---CEEEEEECCCCc-EEEEEecCCCeEEEEEeCCC
Confidence 688888876542 222322222 234678886 67766544432 357888887632 22223222111122232 34
Q ss_pred CCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 272 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 272 g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
|..|+.. ..+ ..|..+|+. ... .....+..+ ...+..+.+.....+++...++. |.++|+.
T Consensus 630 g~~latg-s~d--------g~I~iwD~~-~~~-~~~~~~~~h--~~~V~~v~f~~~~~lvs~s~D~~--ikiWd~~ 690 (793)
T PLN00181 630 GRSLAFG-SAD--------HKVYYYDLR-NPK-LPLCTMIGH--SKTVSYVRFVDSSTLVSSSTDNT--LKLWDLS 690 (793)
T ss_pred CCEEEEE-eCC--------CeEEEEECC-CCC-ccceEecCC--CCCEEEEEEeCCCEEEEEECCCE--EEEEeCC
Confidence 5444433 322 235555554 211 112222222 23455565555556666666665 5556654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.22 Score=52.79 Aligned_cols=141 Identities=14% Similarity=0.246 Sum_probs=92.5
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCC--CEEEEEEecCCCCCceEEEEEc
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDG--QALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg--~~l~y~~~~~~~~~~~l~~~~l 200 (726)
++||-|.+++|+.+ |+ .|+|.++ |+..-+... ...+..+.|||-| ..|+|-.-...+.+.++..+.|
T Consensus 137 ~k~s~~D~y~ARvv---~~---sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI 209 (561)
T COG5354 137 LKFSIDDKYVARVV---GS---SLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI 209 (561)
T ss_pred eeeeecchhhhhhc---cC---eEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence 47999999999985 32 4899998 554433222 3577889999964 4577765555667777777777
Q ss_pred CCCC--ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC--------ceEEEEEeCCCCCCCeEEeeccCC-ceEEeee
Q 004866 201 GSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT--------SSKVFLINAADPFSGLTLIWECEG-LAHCIVE 269 (726)
Q Consensus 201 ~t~~--~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~--------~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~ 269 (726)
..+. ...-++...+ +.+.|.+.|++|++....+. .+.||++++.. ..........+ .+.+.|+
T Consensus 210 p~~s~l~tk~lfk~~~----~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 210 PKNSVLVTKNLFKVSG----VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWE 283 (561)
T ss_pred cCCCeeeeeeeEeecc----cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeec
Confidence 6443 2222333222 46789999999988654332 37899999875 22222223233 3457788
Q ss_pred ecCCEEEEEec
Q 004866 270 HHEGFLYLFTD 280 (726)
Q Consensus 270 ~~g~~l~~~t~ 280 (726)
|+++.|.+++.
T Consensus 284 p~S~~F~vi~g 294 (561)
T COG5354 284 PLSSRFAVISG 294 (561)
T ss_pred ccCCceeEEec
Confidence 99999999884
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=2.1 Score=47.79 Aligned_cols=221 Identities=14% Similarity=0.153 Sum_probs=124.3
Q ss_pred cceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC--ceEEEEEe
Q 004866 169 VSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT--SSKVFLIN 246 (726)
Q Consensus 169 ~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~--~~~l~~~d 246 (726)
.+.++-|||++.++|.-.....+.+.|...++.+++.- -++-.. ...++.|.+|++.++++..... ..+||...
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~---~d~i~~-~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEEL---PDEITN-TSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEeccccccc---chhhcc-cccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 46678999999999987666667788999999887511 011111 1235689999999999886554 47899999
Q ss_pred CCCCCCCeEEeeccCCc-eEEee--eecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEe
Q 004866 247 AADPFSGLTLIWECEGL-AHCIV--EHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVD 323 (726)
Q Consensus 247 ~~~~~~~~~~l~~~~~~-~~~~~--~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~ 323 (726)
+.++...-+.|....+. ....+ +..+..+++..+... ...+..++.+ .++ ..++.+.+...+... .++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~------tsE~~ll~a~-~p~-~~p~vv~pr~~g~eY-~~e 277 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHI------TSEVRLLDAD-DPE-AEPKVVLPRENGVEY-SVE 277 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCc------ceeEEEEecC-CCC-CceEEEEEcCCCcEE-eee
Confidence 98754444445544333 22222 233444555443221 2456666665 443 456666655444433 344
Q ss_pred eeCCEEEEEEEeCCe-eEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEE
Q 004866 324 FCKTHMALILREGRT-YRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVD 402 (726)
Q Consensus 324 ~~~~~lv~~~~~~g~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 402 (726)
-.+++.++..+.+|. ..|....+. . .+..|+ . .++-+... .+. + .+.-.+.+++....-.. +.++.
T Consensus 278 h~~d~f~i~sN~~gknf~l~~ap~~-~-~~~~w~--~----~I~h~~~~-~l~-~--~~~f~~~lVl~eR~~gl-p~v~v 344 (682)
T COG1770 278 HGGDRFYILSNADGKNFKLVRAPVS-A-DKSNWR--E----LIPHREDV-RLE-G--VDLFADHLVLLERQEGL-PRVVV 344 (682)
T ss_pred ecCcEEEEEecCCCcceEEEEccCC-C-ChhcCe--e----eeccCCCc-eee-e--eeeeccEEEEEecccCC-ceEEE
Confidence 457888888898883 356655541 1 111121 1 12222221 111 1 12223445555544333 46666
Q ss_pred EECCCCeEEEEEe
Q 004866 403 YDLSYGKWNIIQQ 415 (726)
Q Consensus 403 ~d~~~~~~~~~~~ 415 (726)
.+.++++...+.-
T Consensus 345 ~~~~~~~~~~i~f 357 (682)
T COG1770 345 RDRKTGEERGIAF 357 (682)
T ss_pred EecCCCceeeEEe
Confidence 7777777665543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.37 Score=52.30 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=85.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+..+.|||||++||.... .| .+.|+|.++.+.+.... ...++.++|. +. ++-+- .+...|..+|
T Consensus 219 ~vtSv~ws~~G~~LavG~~-~g----~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~-~lssG----sr~~~I~~~d 286 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGTS-DG----TVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS-VLSSG----SRDGKILNHD 286 (484)
T ss_pred ceEEEEECCCCCEEEEeec-CC----eEEEEehhhccccccccCCcCceeEEEecc--Cc-eEEEe----cCCCcEEEEE
Confidence 5667789999999999853 44 48999998876655332 3467889998 22 22221 2344677777
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLF 278 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~ 278 (726)
+...+...-+... ...-..++.|++|+++++ ..+..+.+++.|..... .+..+......+. ..|.|.-..|+..
T Consensus 287 vR~~~~~~~~~~~-H~qeVCgLkws~d~~~lA---SGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 287 VRISQHVVSTLQG-HRQEVCGLKWSPDGNQLA---SGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred Eecchhhhhhhhc-ccceeeeeEECCCCCeec---cCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEE
Confidence 7665421111211 122346889999999986 44456788888885532 3344444444433 3455655555443
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.059 Score=58.42 Aligned_cols=167 Identities=15% Similarity=0.058 Sum_probs=92.3
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHH-CC--cEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH--c
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLD-RG--WVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE--K 567 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G--~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~--~ 567 (726)
-.|+++..||.+...-...|...++.++. .| .-|..+|++-.-+ +.+-....+-.+...++.+. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig----------G~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG----------GANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC----------CcchHHHHHHHHHHhhhhhhhhh
Confidence 35889999998732222334444433333 33 3344455552111 01111122333333332222 2
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCCce-eEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCc
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLF-RAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 646 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f-~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 646 (726)
+..-...|.++|+|||..++..+.....|.+ .|+||. ++.+.. ...+ -|.+++ . +
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCi-gypl~~-----vdgp--------rgirDE--~---L----- 300 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCI-GYPLDT-----VDGP--------RGIRDE--A---L----- 300 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEe-cccccC-----CCcc--------cCCcch--h---h-----
Confidence 3335578999999999877777666555544 444432 221100 0000 033221 1 1
Q ss_pred ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC
Q 004866 647 YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE 704 (726)
Q Consensus 647 ~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 704 (726)
. ..+.|+|||.|..|.++++...+++.+++++.. ..++ ..+++|.+.
T Consensus 301 ----l-dmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~-----elhV-I~~adhsma 347 (784)
T KOG3253|consen 301 ----L-DMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEV-----ELHV-IGGADHSMA 347 (784)
T ss_pred ----H-hcCCceEEEecCCcccCCHHHHHHHHHHhhccc-----eEEE-ecCCCcccc
Confidence 1 257799999999999999999999999999864 3333 578999754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.024 Score=61.11 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=72.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc-cc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|.|=-.-+.-+. +...+|.+||+.+++.... .. .+.+.+++|||||+.|+-...| ..|+.|+-
T Consensus 679 KI~slRfHPLAadvLa~a----syd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-----g~~rVy~P 749 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVA----SYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-----GTLRVYEP 749 (1012)
T ss_pred eEEEEEecchhhhHhhhh----hccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC-----ceEEEeCC
Confidence 466678888433322221 2246799999999865432 22 4577899999999999877544 35777766
Q ss_pred CCCCceeEEeeecCC--ceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCC
Q 004866 201 GSTDEDALLLEESNE--NVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~--~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~ 249 (726)
.+.++ -+++.+.. .--..+.|.=||++|++..-.+. ..+|-++|..+
T Consensus 750 rs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 750 RSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 55432 24443321 11234678889999988765443 35677777655
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.62 Score=47.44 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=39.9
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC-ceecccccc--ccceeEEecCCCEEEEE
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG-ALCSKPQAV--RVSNIAWAKDGQALIYV 184 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg-~~~~~~~~~--~~~~~~WspDg~~l~y~ 184 (726)
--.|||||++|.-+.+.-.+.+-.|-|+|.+.+ +.+...... .-..+.|.|||++|+..
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 346999999986665544444567999999833 333222222 33568999999999876
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=60.76 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=64.6
Q ss_pred HCCcEEEEEccCCCCC---CCCcccccccc---cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC
Q 004866 521 DRGWVVAFADVRGGGG---GGKKWHHDGRR---TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC 594 (726)
Q Consensus 521 ~~G~~v~~~d~RG~g~---~g~~~~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~ 594 (726)
+.+-.++.+..|-.|+ +|.+=+..... ..-.....|+...+.+|....-.....|.++|+||||+|++|.=..+
T Consensus 109 ~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKY 188 (492)
T KOG2183|consen 109 ELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKY 188 (492)
T ss_pred hhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcC
Confidence 3688899999998775 44441111111 12245688999999999887556678999999999999999999999
Q ss_pred CCceeEEEE-eCCcc
Q 004866 595 PDLFRAVVL-EVPFL 608 (726)
Q Consensus 595 p~~f~a~v~-~~p~~ 608 (726)
|.+..++++ .+|++
T Consensus 189 PHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 189 PHIVLGALAASAPVL 203 (492)
T ss_pred hhhhhhhhhccCceE
Confidence 998776665 45654
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.022 Score=56.57 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=64.3
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGW--VVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
+..++|++||- .......-....|....-|+ .++...++..|.. ..|..+. ..-..+..++...++.|.+. .
T Consensus 17 ~~~vlvfVHGy-n~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d~--~~a~~s~~~l~~~L~~L~~~--~ 90 (233)
T PF05990_consen 17 DKEVLVFVHGY-NNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYDR--ESARFSGPALARFLRDLARA--P 90 (233)
T ss_pred CCeEEEEEeCC-CCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhhh--hhHHHHHHHHHHHHHHHHhc--c
Confidence 45799999974 33322221222233233333 7899999977752 1122111 11123445555566666654 3
Q ss_pred CCCcEEEEEecccHHHHHHHHHcC----C-----CceeEEEEeCCcccc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCC----P-----DLFRAVVLEVPFLDA 610 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~----p-----~~f~a~v~~~p~~d~ 610 (726)
...+|-|++||||+.+++.++.+. + .+|..+|+.+|=+|.
T Consensus 91 ~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 91 GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 458999999999999999887542 1 245566666665543
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.038 Score=60.50 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=76.7
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc---------h--------HHHHHHHHCCcEEEEEcc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW---------R--------SELKSLLDRGWVVAFADV 531 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~---------~--------~~~~~l~~~G~~v~~~d~ 531 (726)
.+....+..+..|++..++ . ....|+||++.||||.+.-... . ..-..|.+. ..++.+|.
T Consensus 17 ~~~~~~~~~lfyw~~~s~~-~-~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~iD~ 93 (415)
T PF00450_consen 17 PVNDNENAHLFYWFFESRN-D-PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLFIDQ 93 (415)
T ss_dssp EECTTTTEEEEEEEEE-SS-G-GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEEE--
T ss_pred ecCCCCCcEEEEEEEEeCC-C-CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEEEee
Confidence 3444466788877776554 2 3557999999999996521110 0 011234443 67888997
Q ss_pred CCCCCCCCcccccccccCCCCcHHHHHHHHHHH-HHcCCCCCCcEEEEEecccHHHHHHHHH----cC------CCceeE
Q 004866 532 RGGGGGGKKWHHDGRRTKKLNSIKDFISCARFL-IEKEIVKEHKLAGWGYSAGGLLVAAAIN----CC------PDLFRA 600 (726)
Q Consensus 532 RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l-~~~~~~d~~ri~i~G~S~GG~l~~~~~~----~~------p~~f~a 600 (726)
+-+.||...-........-....+|+..+++.+ ...+.....++.|+|.||||..+-.++. +. +=-+++
T Consensus 94 PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkG 173 (415)
T PF00450_consen 94 PVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKG 173 (415)
T ss_dssp STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEE
T ss_pred cCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccccc
Confidence 766666443222111111123445555555433 3344455669999999999987655543 22 223899
Q ss_pred EEEeCCccccc
Q 004866 601 VVLEVPFLDAT 611 (726)
Q Consensus 601 ~v~~~p~~d~~ 611 (726)
+++..|++|..
T Consensus 174 i~IGng~~dp~ 184 (415)
T PF00450_consen 174 IAIGNGWIDPR 184 (415)
T ss_dssp EEEESE-SBHH
T ss_pred ceecCcccccc
Confidence 99999998764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.019 Score=58.55 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=80.8
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHC---------CcEEEEEccCCCCCCCCcccc
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR---------GWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~---------G~~v~~~d~RG~g~~g~~~~~ 543 (726)
-.|.+||...+.|+..+..++.--|+..||.||+. ..|...+..|.+- -|-|++|..+|.|=+
T Consensus 131 IeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv--~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwS------ 202 (469)
T KOG2565|consen 131 IEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSV--REFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWS------ 202 (469)
T ss_pred hcceeEEEEEecCCccccCCcccceEEecCCCchH--HHHHhhhhhhcCccccCCccceeEEEeccCCCCcccC------
Confidence 46889998878887654444444567889999964 3444555555543 378999999987732
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEE
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 602 (726)
++.-..|.+..+-..-..+-+...|+ ++-.|.|+-+|..++..++.-+|+.+.+.=
T Consensus 203 d~~sk~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 203 DAPSKTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred cCCccCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 23333444444433333344455566 789999999999999999999999766543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.21 Score=53.58 Aligned_cols=156 Identities=10% Similarity=0.057 Sum_probs=97.0
Q ss_pred eeeCCCCCEEEEEEeC----CCC---cEEEEEEEECCCCcee--ccccccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 127 SEVSPDHKFLAYTMYD----KDN---DYFTLSVRNLNSGALC--SKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~----~g~---e~~~l~v~dl~tg~~~--~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
+.|.+-|+-|...... .|. ....||+++.. |+.. ++...+-+.++.|+|+|+-|...-- -.+..+-+
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG---fMPAkvti 298 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYG---FMPAKVTI 298 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEe---cccceEEE
Confidence 4699999987765432 221 13579999998 4433 3444667889999999998877631 34567777
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCEE
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGFL 275 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~l 275 (726)
+++... +++.-+..+.. .+.|+|-|++|++.--..-..++-++|..+. +.|.... +.....|+|||.+|
T Consensus 299 fnlr~~----~v~df~egpRN-~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----K~i~~~~a~~tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 299 FNLRGK----PVFDFPEGPRN-TAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----KLIAKFKAANTTVFEWSPDGEYF 369 (566)
T ss_pred EcCCCC----EeEeCCCCCcc-ceEECCCCCEEEEeecCCCCCceEEEeccch----hhccccccCCceEEEEcCCCcEE
Confidence 777542 34443333322 3568999999998776554455556676551 2333222 23445788999998
Q ss_pred EEEecCcccCCCCC-CeEEEEee
Q 004866 276 YLFTDAAKEGQEAD-NHYLLRCP 297 (726)
Q Consensus 276 ~~~t~~~~~~~~~~-~~~l~~~~ 297 (726)
+..|..++-. .. .++|+-+.
T Consensus 370 lTATTaPRlr--vdNg~Kiwhyt 390 (566)
T KOG2315|consen 370 LTATTAPRLR--VDNGIKIWHYT 390 (566)
T ss_pred EEEeccccEE--ecCCeEEEEec
Confidence 8888765311 11 15666554
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.032 Score=55.26 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=67.6
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
-.+.||.|...||-.+ .+| .|.||.+.||.-+.... ..++..+.||.|+..|+-..+| ..+.+|-+.
T Consensus 267 lci~FSRDsEMlAsGs-qDG----kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-----~tvRiHGlK 336 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGS-QDG----KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-----QTVRIHGLK 336 (508)
T ss_pred EEEeecccHHHhhccC-cCC----cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-----ceEEEeccc
Confidence 3456889988887664 344 48999999998665322 3467789999999988776544 356777777
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEE
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVF 243 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 243 (726)
+++.-. -|. ....|.....+++||.+|+-.+ ++++-.+|
T Consensus 337 SGK~LK-Efr-GHsSyvn~a~ft~dG~~iisaS-sDgtvkvW 375 (508)
T KOG0275|consen 337 SGKCLK-EFR-GHSSYVNEATFTDDGHHIISAS-SDGTVKVW 375 (508)
T ss_pred cchhHH-Hhc-CccccccceEEcCCCCeEEEec-CCccEEEe
Confidence 765100 111 1223434577899999976444 33333444
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.041 Score=54.69 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=64.2
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEEC---CCCceecc---cc----ccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNL---NSGALCSK---PQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl---~tg~~~~~---~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.++||||+.||...-+. ++.||.+ ..|+...+ .. ...+..++|||++++++-.+.|..+ +||
T Consensus 234 aavSP~GRFia~~gFTp-----DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w---riw 305 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTP-----DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW---RIW 305 (420)
T ss_pred eeeCCCCcEEEEecCCC-----CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE---EEe
Confidence 47999999999875432 3666664 23432221 11 1245678999999999877666543 555
Q ss_pred EEEcCCCC-ceeEEee------ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 197 CSIIGSTD-EDALLLE------ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 197 ~~~l~t~~-~~~lv~~------~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
-.|+.-.. +|.-+.. .....-.+.+..||.|+.|+++..+ .|.++..+++
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs----~l~~~~se~g 362 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS----DLKVFASEDG 362 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC----ceEEEEcccC
Confidence 44432211 1211111 1111222467889999999876643 4666666653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=54.69 Aligned_cols=123 Identities=14% Similarity=0.178 Sum_probs=87.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
+.-+++||--+.+.-+....| .+.+||+.+..+..-.. .....+++|||-...|+.+- +...+|+.+|+
T Consensus 167 vRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV----G~Dkki~~yD~ 238 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV----GYDKKINIYDI 238 (673)
T ss_pred EEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe----cccceEEEeec
Confidence 345678999999988876666 58999998765443211 22456789999988887764 23358999999
Q ss_pred CCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC
Q 004866 201 GSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE 261 (726)
Q Consensus 201 ~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 261 (726)
++.. .+.++|+.+ +..++++++|.+|+..... .+|+.+|+.....+++.+....
T Consensus 239 ~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG~s~---G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 239 RSQASTDRLTYSHP----LSTVAFSECGTYLCAGNSK---GELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred ccccccceeeecCC----cceeeecCCceEEEeecCC---ceEEEEecccCCCCceEeeecc
Confidence 9877 778887643 3457899999999876554 4799999987544444444433
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.14 Score=56.02 Aligned_cols=117 Identities=10% Similarity=0.140 Sum_probs=70.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc---cc--ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK---PQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~---~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.++..++||||++|||+.-. ...||-+..+..-.+.. .. .-....+.++-|+..+++...+ ...+..
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~----~~~le~ 455 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN----IFSLEE 455 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc----cceeEE
Confidence 45667899999999998532 13345444443211110 01 1134567899999999998633 235656
Q ss_pred EEcCCCC-ceeEEeeec-CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 198 SIIGSTD-EDALLLEES-NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 198 ~~l~t~~-~~~lv~~~~-d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
..+.++. +...-..+. ..+....+..|+||.||+..+. ...|+.+++++.
T Consensus 456 ~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~ 507 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST---RGQIFVYNLETL 507 (691)
T ss_pred EEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec---cceEEEEEcccc
Confidence 6665554 221111111 2233345778999999988774 457999999984
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.028 Score=55.81 Aligned_cols=97 Identities=21% Similarity=0.127 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcE
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKL 575 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 575 (726)
.|+++|++-|.. ..|....+.|...++.|..+.++|.+.. .....+++++++..-..+.+- ...++.
T Consensus 2 ~lf~~p~~gG~~--~~y~~la~~l~~~~~~v~~i~~~~~~~~----------~~~~~si~~la~~y~~~I~~~-~~~gp~ 68 (229)
T PF00975_consen 2 PLFCFPPAGGSA--SSYRPLARALPDDVIGVYGIEYPGRGDD----------EPPPDSIEELASRYAEAIRAR-QPEGPY 68 (229)
T ss_dssp EEEEESSTTCSG--GGGHHHHHHHTTTEEEEEEECSTTSCTT----------SHEESSHHHHHHHHHHHHHHH-TSSSSE
T ss_pred eEEEEcCCccCH--HHHHHHHHhCCCCeEEEEEEecCCCCCC----------CCCCCCHHHHHHHHHHHhhhh-CCCCCe
Confidence 578888876633 5677777777666689999999987621 112246666655432222211 112389
Q ss_pred EEEEecccHHHHHHHHHcC---CCceeEEEEeC
Q 004866 576 AGWGYSAGGLLVAAAINCC---PDLFRAVVLEV 605 (726)
Q Consensus 576 ~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~ 605 (726)
.++|+|+||.++..+|.+- -.....+++..
T Consensus 69 ~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 69 VLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp EEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred eehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 9999999999998887652 22344555444
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0052 Score=64.95 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=43.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 184 (726)
.+..+.+||||++||.++ .+| .|+|.|..+.+.+-+.. .+..--++||||||+|+.-
T Consensus 292 ~in~f~FS~DG~~LA~VS-qDG----fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-QDG----FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEe-cCc----eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec
Confidence 677889999999999985 455 49999998877654432 2344457999999988654
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.011 Score=63.31 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred ccEEEEEcCC-CCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc----
Q 004866 494 NPGLLHGHGA-YGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK---- 567 (726)
Q Consensus 494 ~P~vl~~hGg-~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---- 567 (726)
.-+|+|.||| +-.+...+..+....|+. .|+-|+.+||--. .....+...+.+.-+.-|++.+
T Consensus 396 ~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLA-----------PEaPFPRaleEv~fAYcW~inn~all 464 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLA-----------PEAPFPRALEEVFFAYCWAINNCALL 464 (880)
T ss_pred ceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccC-----------CCCCCCcHHHHHHHHHHHHhcCHHHh
Confidence 3489999995 555566677777777876 5999999998743 4445677899999999999976
Q ss_pred CCCCCCcEEEEEecccHHHHHHHH
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAI 591 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~ 591 (726)
|+ ..+||++.|.|+||.+.+..+
T Consensus 465 G~-TgEriv~aGDSAGgNL~~~Va 487 (880)
T KOG4388|consen 465 GS-TGERIVLAGDSAGGNLCFTVA 487 (880)
T ss_pred Cc-ccceEEEeccCCCcceeehhH
Confidence 44 458999999999998765544
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.1 Score=45.07 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=64.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec--ccc--cc-ccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS--KPQ--AV-RVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~--~~~--~~-~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.+..++|+|||...++.. +.... ..+.+..+|.... +.. .. .+..+.+||||.++++...+... .+|++
T Consensus 67 ~l~~PS~d~~g~~W~v~~---~~~~~-~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~--~~v~v 140 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDD---GSGGV-RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGG--GRVYV 140 (253)
T ss_pred ccccccccCCCCEEEEEc---CCCce-EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCC--CeEEE
Confidence 567889999977554432 22222 2333444444332 222 12 57889999999999998755432 46776
Q ss_pred EEcCCCC---ceeEE--eee--cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 198 SIIGSTD---EDALL--LEE--SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 198 ~~l~t~~---~~~lv--~~~--~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
-.+-... ...+. ..- ....-..++.|+++++.+++.......... ++...+
T Consensus 141 a~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG 198 (253)
T PF10647_consen 141 AGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDG 198 (253)
T ss_pred EEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE-EEEccC
Confidence 6553221 11111 000 101122478999999877666554433222 355444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.043 Score=58.52 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=77.8
Q ss_pred CccEEEEEcC-CCCCCCCccc----hHHHHHHHH-CCcEEEEEccCCCCCC---CCcccccccccCCCCcHHHHHHHHHH
Q 004866 493 QNPGLLHGHG-AYGELLDKRW----RSELKSLLD-RGWVVAFADVRGGGGG---GKKWHHDGRRTKKLNSIKDFISCARF 563 (726)
Q Consensus 493 ~~P~vl~~hG-g~~~~~~~~~----~~~~~~l~~-~G~~v~~~d~RG~g~~---g~~~~~~~~~~~~~~~~~D~~~~~~~ 563 (726)
..|+.|++-| |+.. ..| ...+..||+ .|-.|+....|-.|.+ +..=....+...-...+.|+...++.
T Consensus 85 ~gPiFLmIGGEgp~~---~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~ 161 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPES---DKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKA 161 (514)
T ss_pred CCceEEEEcCCCCCC---CCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHH
Confidence 3589999877 3332 222 123445555 6999999999987643 11100011111123457788877777
Q ss_pred HHHc-CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccc
Q 004866 564 LIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 564 l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~ 610 (726)
+-.+ +.-++.+...+|+||-|.|++|.=..+|++..++|+.++.+..
T Consensus 162 ~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A 209 (514)
T KOG2182|consen 162 MNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLA 209 (514)
T ss_pred HHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeE
Confidence 7654 4567679999999999999999999999999999888766543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=2.3 Score=50.81 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=67.4
Q ss_pred eeceeeCCC-CCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEec-CCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAK-DGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPD-G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+..+.|+|. +++||-+ +.+| .|.+||+.+++.+.... ...+..++|+| |+..|+-.. . ...|.+++
T Consensus 535 v~~l~~~~~~~~~las~-~~Dg----~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-~----Dg~v~iWd 604 (793)
T PLN00181 535 LSGICWNSYIKSQVASS-NFEG----VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-D----DGSVKLWS 604 (793)
T ss_pred eeeEEeccCCCCEEEEE-eCCC----eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-C----CCEEEEEE
Confidence 455678775 5666544 4444 59999999987654322 34567899997 666554442 2 23688888
Q ss_pred cCCCCceeEEeeecCCceEEEEEE-cCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 200 IGSTDEDALLLEESNENVYVNIRH-TKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~-s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+.++.. ...+.... ....+.| +++|++|+..+.+ ..|+++|+.++
T Consensus 605 ~~~~~~-~~~~~~~~--~v~~v~~~~~~g~~latgs~d---g~I~iwD~~~~ 650 (793)
T PLN00181 605 INQGVS-IGTIKTKA--NICCVQFPSESGRSLAFGSAD---HKVYYYDLRNP 650 (793)
T ss_pred CCCCcE-EEEEecCC--CeEEEEEeCCCCCEEEEEeCC---CeEEEEECCCC
Confidence 876542 11222111 1234556 5678888765543 46889998764
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0089 Score=58.29 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=48.7
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcE---EEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 497 LLHGHGAYGELLDKRWRSELKSLLDRGWV---VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 497 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
||++||-.+ .....|......|.++||. |+..+|-...... ...... ........+.+.++.+. .++-.
T Consensus 4 VVlVHG~~~-~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~--~~~~~~--~~~~~~~~l~~fI~~Vl--~~TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGG-NAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSP--SVQNAH--MSCESAKQLRAFIDAVL--AYTGA- 75 (219)
T ss_dssp EEEE--TTT-TTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHT--HHHHHH--B-HHHHHHHHHHHHHHH--HHHT--
T ss_pred EEEECCCCc-chhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCC--cccccc--cchhhHHHHHHHHHHHH--HhhCC-
Confidence 567787543 2446789999999999999 7999985433210 000000 01112234444444444 34566
Q ss_pred cEEEEEecccHHHHHHHHHc
Q 004866 574 KLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~ 593 (726)
||=|+|||+||.++-+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999888764
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.2 Score=43.26 Aligned_cols=176 Identities=10% Similarity=0.050 Sum_probs=98.0
Q ss_pred EEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEE
Q 004866 147 YFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRH 223 (726)
Q Consensus 147 ~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~ 223 (726)
..+|++|.+.||.-..... ...+..++-+||++.|+... ...|.++|+.+.. ..+..|+..... ...+.+
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~kN-VtaVgF 91 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTKN-VTAVGF 91 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccCCc-eEEEEE
Confidence 3579999999998665433 44667899999999887653 2378889998876 456667654332 345778
Q ss_pred cCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCC
Q 004866 224 TKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP 303 (726)
Q Consensus 224 s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~ 303 (726)
--||++++-.+ .+++ +.++|+..+. ..++......+...+-|.+..=+|..+..+ + |...|+. .
T Consensus 92 ~~dgrWMyTgs-eDgt--~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg------~--irvWDl~-~-- 155 (311)
T KOG0315|consen 92 QCDGRWMYTGS-EDGT--VKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSG------N--IRVWDLG-E-- 155 (311)
T ss_pred eecCeEEEecC-CCce--EEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCC------c--EEEEEcc-C--
Confidence 89999986433 3333 4444555421 222222222222223333333344444332 3 4455554 1
Q ss_pred CCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 304 SRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 304 ~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
..--..++ ++.+..+..+.+.. +.++...+..| .++++++-.
T Consensus 156 ~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG--~cyvW~l~~ 198 (311)
T KOG0315|consen 156 NSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKG--NCYVWRLLN 198 (311)
T ss_pred CccccccC-CCCCcceeeEEEcCCCcEEEEecCCc--cEEEEEccC
Confidence 01113344 44566777766553 33444444444 456666654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.22 Score=52.88 Aligned_cols=149 Identities=17% Similarity=0.096 Sum_probs=84.8
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce-ecccc-------ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-CSKPQ-------AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~-~~~~~-------~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+.+..-.|.|+.+-...+...+| +|++||+..-+. +++.. .......+|++||+.|+-...|. .
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---S 340 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---S 340 (641)
T ss_pred eeeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---c
Confidence 456777789999999877766555 489999876532 22211 11346789999999987654432 2
Q ss_pred ceEEEEEcCCCC--ceeEEeeecCC-ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe---EEeeccCCceEE
Q 004866 193 YQIYCSIIGSTD--EDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL---TLIWECEGLAHC 266 (726)
Q Consensus 193 ~~l~~~~l~t~~--~~~lv~~~~d~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~---~~l~~~~~~~~~ 266 (726)
-++|- .++-. ....+-..... .-...+.+|+||++|+ +++....|-++||......+ .-|..+.....+
T Consensus 341 IQ~W~--~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll---SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 341 IQIWD--KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL---SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred eeeee--cCCcccccceEeeeccCCCCceeEEEeccccchhh---hccCCCceeeeeccccccchhhhcCCCccCCCCcc
Confidence 34443 33222 11222111111 1234688999999997 34444567778886643211 122233334445
Q ss_pred eeeecCCEEEEEecC
Q 004866 267 IVEHHEGFLYLFTDA 281 (726)
Q Consensus 267 ~~~~~g~~l~~~t~~ 281 (726)
.++|+.+.++--+..
T Consensus 416 ~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSA 430 (641)
T ss_pred ccCCCceEEEecccc
Confidence 567777655554443
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.059 Score=52.70 Aligned_cols=174 Identities=17% Similarity=0.151 Sum_probs=95.9
Q ss_pred EEEEcCCCCCCCCccEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHH
Q 004866 481 TIIYSPKYKKENQNPGLLHGHGAYGELLDK--RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI 558 (726)
Q Consensus 481 ~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~ 558 (726)
|+..|+. + -.||++-||.-....| .|+...+.|+++||+|++.-|.-+= .... . -...+..+.
T Consensus 9 wvl~P~~-----P-~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tf----DH~~--~---A~~~~~~f~ 73 (250)
T PF07082_consen 9 WVLIPPR-----P-KGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTF----DHQA--I---AREVWERFE 73 (250)
T ss_pred EEEeCCC-----C-CEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCC----cHHH--H---HHHHHHHHH
Confidence 6676652 1 2678877764433233 4677789999999999998886321 1000 0 112355667
Q ss_pred HHHHHHHHcCCCCCC--cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChh----hhcccCCC
Q 004866 559 SCARFLIEKEIVKEH--KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAA----DYEEFGYP 632 (726)
Q Consensus 559 ~~~~~l~~~~~~d~~--ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~----~~~~~g~~ 632 (726)
.|++.|.+.+..++. .+.-+|||+|.-+-+.+....+.--++-|+ ..+-|.. ....+|+... ...|| .|
T Consensus 74 ~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gnil-iSFNN~~---a~~aIP~~~~l~~~l~~EF-~P 148 (250)
T PF07082_consen 74 RCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNIL-ISFNNFP---ADEAIPLLEQLAPALRLEF-TP 148 (250)
T ss_pred HHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEE-EecCChH---HHhhCchHhhhccccccCc-cC
Confidence 788888876544433 678899999999888877654332222222 1222211 1233343211 01233 12
Q ss_pred CChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcC
Q 004866 633 GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVREST 685 (726)
Q Consensus 633 ~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~ 685 (726)
.-.+....++++- .+.. .+||-=..|.. .|+..+.+.|+.+.
T Consensus 149 sP~ET~~li~~~Y---~~~r-----nLLIkF~~D~i---Dqt~~L~~~L~~r~ 190 (250)
T PF07082_consen 149 SPEETRRLIRESY---QVRR-----NLLIKFNDDDI---DQTDELEQILQQRF 190 (250)
T ss_pred CHHHHHHHHHHhc---CCcc-----ceEEEecCCCc---cchHHHHHHHhhhc
Confidence 2223333343321 2222 46666556654 38899999999864
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.4 Score=54.48 Aligned_cols=156 Identities=12% Similarity=-0.036 Sum_probs=89.9
Q ss_pred CCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCE
Q 004866 103 KIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQA 180 (726)
Q Consensus 103 ~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~ 180 (726)
+.++.+|+.- +..+...++|-||+++|..++ .+.|.++++.++....... ...+..+.+.|.+..
T Consensus 86 ~~~~~iL~Rf--------tlp~r~~~v~g~g~~iaagsd-----D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 86 GEEDTILARF--------TLPIRDLAVSGSGKMIAAGSD-----DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred CCccceeeee--------eccceEEEEecCCcEEEeecC-----ceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 4555566543 234455679999999998754 3568999988764433322 456778999999998
Q ss_pred EEEEEecCCCCCceEEEEEcCCCC-ceeE--Ee---eecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe
Q 004866 181 LIYVVTDQNKRPYQIYCSIIGSTD-EDAL--LL---EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL 254 (726)
Q Consensus 181 l~y~~~~~~~~~~~l~~~~l~t~~-~~~l--v~---~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 254 (726)
|+....+ ..|+.+++.++. ...+ +. +..+.+....++|+|+|..+++...+ ..|-+++..+.....
T Consensus 153 LAvss~d-----G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d---~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 153 LAVSSCD-----GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD---NTVKVYSRKGWELQF 224 (933)
T ss_pred EEEEecC-----ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC---CeEEEEccCCceehe
Confidence 8887544 368888887653 1111 11 11112344578999997666554433 245555555432111
Q ss_pred EEeeccC-Cce-EEeeeecCCEEEEEe
Q 004866 255 TLIWECE-GLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 255 ~~l~~~~-~~~-~~~~~~~g~~l~~~t 279 (726)
+...... ... ...|+|.|.+|+-.+
T Consensus 225 ~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred eecccccccceEEEEEcCCCcEEeeec
Confidence 1111111 111 235677777665544
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.63 Score=46.53 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=64.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..+.||+||++|.-++ ++. .+.+||+..|..+.... ...+....|.|-.+..+....-+. .-++.+++
T Consensus 67 pi~sl~WS~dgr~LltsS-~D~----si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~----sp~vi~~s 137 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSS-RDW----SIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE----SPVVIDFS 137 (405)
T ss_pred ceeEEEecCCCCEeeeec-CCc----eeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC----CcEEEEec
Confidence 467789999999997664 333 48899999998654322 334456677776554444332111 23445555
Q ss_pred CCCceeEEeeecCCceEEEE---EEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 202 STDEDALLLEESNENVYVNI---RHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~---~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+... ++-..++....... .+.+-|+||+..... ..+.++|.++
T Consensus 138 ~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK---Gkllv~~a~t 184 (405)
T KOG1273|consen 138 DPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSK---GKLLVYDAET 184 (405)
T ss_pred CCcee-eccCCCccccccccccccccCCCCEEEEecCc---ceEEEEecch
Confidence 43322 22222222211112 367889998754433 3566777766
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.4 Score=48.02 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCC
Q 004866 654 VLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEE 704 (726)
Q Consensus 654 ~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~ 704 (726)
...|.|++....|..|++.+.+++++..++.|. .+.. +.+.+|..-
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~-----~V~~~~f~~S~HV~H 224 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARRKGW-----DVRAEKFEDSPHVAH 224 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCC-----eEEEecCCCCchhhh
Confidence 468999999999999999999999999999884 3433 778888643
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.021 Score=38.82 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=20.9
Q ss_pred cccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 167 VRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 167 ~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.....+.|||||++|+|++........+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 3567899999999999998654223445663
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.9 Score=44.87 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=80.3
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc-cchHHHHHHHHCCcEEEEEccCCCC-CCCCcc--
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-RWRSELKSLLDRGWVVAFADVRGGG-GGGKKW-- 541 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~~~-- 541 (726)
|.+++.. ++.++.+ ++.|... +.+.-+||.+||......-+ .-.+....|.++||+.+.+..+.-- ..-...
T Consensus 63 e~~~L~~-~~~~fla-L~~~~~~--~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~ 138 (310)
T PF12048_consen 63 EVQWLQA-GEERFLA-LWRPANS--AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRAT 138 (310)
T ss_pred hcEEeec-CCEEEEE-EEecccC--CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCC
Confidence 4455554 6666665 6666543 34456899999853333222 2345678899999999998877510 000000
Q ss_pred -----ccccccc---------------------CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCC
Q 004866 542 -----HHDGRRT---------------------KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP 595 (726)
Q Consensus 542 -----~~~~~~~---------------------~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p 595 (726)
..++... .....+.-+.+++.++.+++. .+|+|+|++.|+++++.++...+
T Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~~ 215 (310)
T PF12048_consen 139 EAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEKP 215 (310)
T ss_pred CCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcCC
Confidence 0000000 001223444566666666653 45999999999999999998765
Q ss_pred C-ceeEEEEeCCc
Q 004866 596 D-LFRAVVLEVPF 607 (726)
Q Consensus 596 ~-~f~a~v~~~p~ 607 (726)
. ...+.|++.+.
T Consensus 216 ~~~~daLV~I~a~ 228 (310)
T PF12048_consen 216 PPMPDALVLINAY 228 (310)
T ss_pred CcccCeEEEEeCC
Confidence 4 36778866553
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.2 Score=46.58 Aligned_cols=159 Identities=12% Similarity=0.123 Sum_probs=98.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+......|.|.|+..+++ +| .+-+.|+.+|..+.... ...+...++.|||- .|... .....|-++|
T Consensus 306 V~~ls~h~tgeYllsAs~-d~----~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtg---t~d~~vkiwd 375 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASN-DG----TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTG---TPDGVVKIWD 375 (506)
T ss_pred ceeeeeccCCcEEEEecC-Cc----eEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEecc---CCCceEEEEE
Confidence 456678999999988754 33 36678899987654433 23467899999984 33322 1234778888
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGFLYL 277 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~l~~ 277 (726)
+.++. ...-|.....+ .-.+.+|.+|-||+..++.+ .|.++||.... .++.+.... +...+.++..|..|.+
T Consensus 376 lks~~-~~a~Fpght~~-vk~i~FsENGY~Lat~add~---~V~lwDLRKl~-n~kt~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 376 LKSQT-NVAKFPGHTGP-VKAISFSENGYWLATAADDG---SVKLWDLRKLK-NFKTIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred cCCcc-ccccCCCCCCc-eeEEEeccCceEEEEEecCC---eEEEEEehhhc-ccceeeccccccceeEEEcCCCCeEEe
Confidence 87654 22223222222 23578999999998877654 38888986532 333443332 2345667767776665
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEe
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVF 311 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ 311 (726)
..+ ..++|.+.-. ...|+.+.
T Consensus 450 ~g~---------~l~Vy~~~k~----~k~W~~~~ 470 (506)
T KOG0289|consen 450 AGS---------DLQVYICKKK----TKSWTEIK 470 (506)
T ss_pred ecc---------eeEEEEEecc----cccceeee
Confidence 522 3667777643 47898764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.17 Score=53.47 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=71.4
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
+++|||.+ |+|+.-.+|+ |.||||.....+.... .++.+.+..|+||..|+---.| +-|..+|+.++.
T Consensus 515 La~spDak-vcFsccsdGn----I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD-----ntvRcWDlregr 584 (705)
T KOG0639|consen 515 LAISPDAK-VCFSCCSDGN----IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD-----NTVRCWDLREGR 584 (705)
T ss_pred hhcCCccc-eeeeeccCCc----EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc-----cceeehhhhhhh
Confidence 57899998 6788877775 9999998776555433 4567789999999988654322 356677776543
Q ss_pred ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 205 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+ ..-+.-.... .++..+|.+.||++...+ +.++++....+
T Consensus 585 q-lqqhdF~SQI--fSLg~cP~~dWlavGMen---s~vevlh~skp 624 (705)
T KOG0639|consen 585 Q-LQQHDFSSQI--FSLGYCPTGDWLAVGMEN---SNVEVLHTSKP 624 (705)
T ss_pred h-hhhhhhhhhh--eecccCCCccceeeeccc---CcEEEEecCCc
Confidence 1 1111111111 246679999999987653 45777777653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.6 Score=45.36 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=95.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
....++++|+++ |..+... ..+.++|.++........ ...-..++|+||++.+|.+.... ....+...+-.+.
T Consensus 77 ~~i~v~~~~~~v-yv~~~~~---~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid~~t~ 150 (381)
T COG3391 77 AGVAVNPAGNKV-YVTTGDS---NTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--GNNTVSVIDAATN 150 (381)
T ss_pred cceeeCCCCCeE-EEecCCC---CeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc--CCceEEEEeCCCC
Confidence 356789999986 4444332 358999977766554333 22456789999999998875421 3457888887766
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE------eeccCCceEEeeeecCCEEEE
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL------IWECEGLAHCIVEHHEGFLYL 277 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~------l~~~~~~~~~~~~~~g~~l~~ 277 (726)
.....++.... + .++.++|+|+.+++.. ...+.|.++|..+. .... +..........++++|..+|+
T Consensus 151 ~~~~~~~vG~~-P--~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~--~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 151 KVTATIPVGNT-P--TGVAVDPDGNKVYVTN--SDDNTVSVIDTSGN--SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred eEEEEEecCCC-c--ceEEECCCCCeEEEEe--cCCCeEEEEeCCCc--ceeccccccccccCCCCceEEECCCCCEEEE
Confidence 52222332222 2 4678899999988776 34577888887652 2221 212222234457788888777
Q ss_pred EecCcccCCCCCCeEEEEeeCC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.-.... ...+..++..
T Consensus 224 ~~~~~~------~~~v~~id~~ 239 (381)
T COG3391 224 ANDGSG------SNNVLKIDTA 239 (381)
T ss_pred EeccCC------CceEEEEeCC
Confidence 654331 1346666654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=56.50 Aligned_cols=135 Identities=8% Similarity=-0.012 Sum_probs=80.2
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCcee
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA 207 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~ 207 (726)
++|||+.|--. ......+.++|.++.+...... ..+.....++|||+++|.+.++... ...+-.++.++. ...
T Consensus 200 lpnDGk~l~~~----~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~-G~tl~em~a~e~-d~~ 273 (635)
T PRK02888 200 LPNDGKDLDDP----KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE-GVTLAEMMAAER-DWV 273 (635)
T ss_pred cCCCCCEeecc----cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc-CcceeeeccccC-ceE
Confidence 79999977322 2334568899999876554323 4455678999999999998754322 223433333221 222
Q ss_pred EEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC----CCCCeEEeeccCCceEEeeeecCCEEEEEe
Q 004866 208 LLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD----PFSGLTLIWECEGLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 208 lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~----~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t 279 (726)
++|.-... -.+.+|||+.++. .+.|-++|..+ +..-...|.-........++|||+++|+..
T Consensus 274 vvfni~~i-----ea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 274 VVFNIARI-----EEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred EEEchHHH-----HHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence 23321110 1457899988862 35788999876 212223333344445567889999877643
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=52.36 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=64.2
Q ss_pred eeeCCC-CCEEEEEEeCCCCcEEEEEEEECCCCceecccc--cc--ccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 127 SEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AV--RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 127 ~~~SPD-G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~--~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..+|+ +.-+||. .+-|. .+.++|..+|+...... .+ -++.-.|||||++||-+.++-......|-++|..
T Consensus 10 ~a~~p~~~~avafa-RRPG~---~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 10 VAAHPTRPEAVAFA-RRPGT---FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred eeeCCCCCeEEEEE-eCCCc---EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 468994 4445555 56774 47899999998775432 22 3467899999999988877654445567777876
Q ss_pred CCCceeEEeeecC-CceEEEEEEcCCCcEEEEEE
Q 004866 202 STDEDALLLEESN-ENVYVNIRHTKDFHFVCVHT 234 (726)
Q Consensus 202 t~~~~~lv~~~~d-~~~~~~~~~s~Dg~~l~~~~ 234 (726)
.+-..+--|.... ++ -.+.+.|||+.|++..
T Consensus 86 ~~~~ri~E~~s~GIGP--Hel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGP--HELLLMPDGETLVVAN 117 (305)
T ss_pred CCcEEEeEecCCCcCh--hhEEEcCCCCEEEEEc
Confidence 2212211121110 11 1357899999988754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.84 Score=44.37 Aligned_cols=198 Identities=9% Similarity=0.015 Sum_probs=103.6
Q ss_pred ceeeCC-CCCEEEEEEeC----CCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 126 LSEVSP-DHKFLAYTMYD----KDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 126 ~~~~SP-DG~~la~~~~~----~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
++++|| --++||..... .|+ -.|+|.+++.++-+.+.. .+...+++|++....++++...+ ..|.
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~--G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD----GSLr 86 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGN--GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD----GSLR 86 (311)
T ss_pred eeEecccccchhheeehhhcccccC--ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC----ceEE
Confidence 346787 23345544221 232 359999997444333211 34567899999998888886533 2466
Q ss_pred EEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEE--eeeecCCE
Q 004866 197 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHC--IVEHHEGF 274 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~--~~~~~g~~ 274 (726)
++|+..+......+.|.... ..++.|++-.++++++++=+.+-+||..+... .++.+. ......| .++|.-..
T Consensus 87 l~d~~~~s~Pi~~~kEH~~E-V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---Sv~Tf~-gh~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKRE-VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---SVQTFN-GHNSCIYQAAFSPHIPN 161 (311)
T ss_pred EeccCCCCcchhHHHhhhhh-eEEeccccccceeEEeeccCCceEeecCCCCc---ceEeec-CCccEEEEEecCCCCCC
Confidence 66765444445556554333 23577888888888777544556677655533 223322 2222333 34444444
Q ss_pred EEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
++..+..++ ..+|+.++. + ++...+-.+..+..-.++.-.+..++++...++. |+.+|+.
T Consensus 162 lfas~Sgd~------~l~lwdvr~---~--gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~--vr~wDir 221 (311)
T KOG0277|consen 162 LFASASGDG------TLRLWDVRS---P--GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL--VRGWDIR 221 (311)
T ss_pred eEEEccCCc------eEEEEEecC---C--CceeEEEeccceeEeecccccCCcEEEecCCCce--EEEEehh
Confidence 444443332 244554433 2 2223222232222223444456788877766654 4445653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.1 Score=44.42 Aligned_cols=207 Identities=14% Similarity=0.154 Sum_probs=112.0
Q ss_pred cEEEeecccccccCCceEEeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCce----ecccc-ccccceeEEecCC
Q 004866 105 EQKLLDYNQEAERFGGYAYEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGAL----CSKPQ-AVRVSNIAWAKDG 178 (726)
Q Consensus 105 ~~~lld~n~~~~~~~~~~~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~----~~~~~-~~~~~~~~WspDg 178 (726)
.+.+|..|+-++. . .-+..|.|.- |-++|..+ +.+ .+..|||+++|.. +++.. ...+..++|+.+|
T Consensus 137 ~~~~L~~~kns~~-~--aPlTSFDWne~dp~~igtS-SiD----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s 208 (364)
T KOG0290|consen 137 LQSVLNNNKNSEF-C--APLTSFDWNEVDPNLIGTS-SID----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS 208 (364)
T ss_pred hhhhhccCccccc-C--CcccccccccCCcceeEee-ccc----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCc
Confidence 3445555543222 1 1466777865 44544443 332 3578999999832 33322 3467889999999
Q ss_pred CEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCC-ceEEEEEEcCCCc-EEEEEEcCCCceEEEEEeCCCCCCCeEE
Q 004866 179 QALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNE-NVYVNIRHTKDFH-FVCVHTFSTTSSKVFLINAADPFSGLTL 256 (726)
Q Consensus 179 ~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~-~~~~~~~~s~Dg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~ 256 (726)
+.+|-+... ...|.+.||..-+..+++|+.+.. .-.+.++|++..- +++ .-...+++|-++|+.-+......
T Consensus 209 ~~~FASvga----DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA--Tf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 209 RDVFASVGA----DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA--TFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred cceEEEecC----CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHh--hhhcCCceEEEEEecCCCcceeh
Confidence 888776432 236888898887777889987652 2235566766543 332 22234578999999887655444
Q ss_pred eeccCCceEE-eeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee---CCEEEEE
Q 004866 257 IWECEGLAHC-IVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC---KTHMALI 332 (726)
Q Consensus 257 l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~---~~~lv~~ 332 (726)
+......+.. .|.|....-+. |-.+ +.+....|+..-+....-.+++.-..+..+..++|. .+.+.+.
T Consensus 283 L~~H~a~VNgIaWaPhS~~hic-taGD-------D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHIC-TAGD-------DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred hhcCcccccceEecCCCCceee-ecCC-------cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEE
Confidence 5444433332 33333332222 2211 245566666511111222233333334455555554 3566555
Q ss_pred E
Q 004866 333 L 333 (726)
Q Consensus 333 ~ 333 (726)
+
T Consensus 355 ~ 355 (364)
T KOG0290|consen 355 F 355 (364)
T ss_pred e
Confidence 4
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.23 Score=53.73 Aligned_cols=115 Identities=11% Similarity=0.218 Sum_probs=72.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCE-EEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQA-LIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~-l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+++.|-|.+||-.++ .| ++.||.+.||..+.... .+.+..++|+|.++. |+-...... +++.+-
T Consensus 402 ~Vr~iSvdp~G~wlasGsd-DG----tvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-----~~ivnp 471 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSD-DG----TVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-----VLIVNP 471 (733)
T ss_pred eEEEEEecCCcceeeecCC-CC----cEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-----eEEeCc
Confidence 5667789999999987653 34 49999999998776544 557788999998863 222222211 111111
Q ss_pred --C-------------------------------C---CCce-eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEE
Q 004866 201 --G-------------------------------S---TDED-ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVF 243 (726)
Q Consensus 201 --~-------------------------------t---~~~~-~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 243 (726)
| + .+.. .++..-.. -.-++.|..+|.||+.....+....+.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k--~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK--SIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC--ccceeeeecCCceEEEeccCCCcceEE
Confidence 1 0 0000 00100000 012578999999999988888888888
Q ss_pred EEeCCC
Q 004866 244 LINAAD 249 (726)
Q Consensus 244 ~~d~~~ 249 (726)
+..+..
T Consensus 550 iHQLSK 555 (733)
T KOG0650|consen 550 IHQLSK 555 (733)
T ss_pred EEeccc
Confidence 888876
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.41 Score=49.48 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=46.8
Q ss_pred EeeceeeCCCCCEEEEEEe-----CCC-CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPDHKFLAYTMY-----DKD-NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~-----~~g-~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.....++.|||+.-+=... ... .+.-.||.+|+.++....+.. .....+++||||++.||++-. ...+|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT----~~~~i 187 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT----PANRI 187 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC----CCCeE
Confidence 3445678999985432222 111 122358888886554444433 334567999999999999843 23478
Q ss_pred EEEEcC
Q 004866 196 YCSIIG 201 (726)
Q Consensus 196 ~~~~l~ 201 (726)
+++++.
T Consensus 188 ~r~~~d 193 (307)
T COG3386 188 HRYDLD 193 (307)
T ss_pred EEEecC
Confidence 888775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.083 Score=59.12 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=60.0
Q ss_pred cEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEE
Q 004866 146 DYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIR 222 (726)
Q Consensus 146 e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~ 222 (726)
+.+.|.|+|..|-+.++... .+...++.||||||||+-...|. .|..+|+.++. .|.+.+.. + ..++.
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----tIr~wDlpt~~lID~~~vd~--~--~~sls 624 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----TIRTWDLPTGTLIDGLLVDS--P--CTSLS 624 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----cEEEEeccCcceeeeEecCC--c--ceeeE
Confidence 35679999998877665432 45778999999999999887654 58889998887 66555432 2 24678
Q ss_pred EcCCCcEEEEEEc
Q 004866 223 HTKDFHFVCVHTF 235 (726)
Q Consensus 223 ~s~Dg~~l~~~~~ 235 (726)
+||+|.+|+....
T Consensus 625 ~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 625 FSPNGDFLATVHV 637 (910)
T ss_pred ECCCCCEEEEEEe
Confidence 8999999975443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=3.1 Score=42.69 Aligned_cols=142 Identities=9% Similarity=0.041 Sum_probs=87.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
++-.++.+|+.+++|-. +|+ ---|+|++.+|+..- ++. .+.+....||.||..|+-- ....+|.++..
T Consensus 66 svFavsl~P~~~l~aTG---GgD--D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG-----dmsG~v~v~~~ 135 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATG---GGD--DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG-----DMSGKVLVFKV 135 (399)
T ss_pred ceEEEEeCCCCceEEec---CCC--ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec-----CCCccEEEEEc
Confidence 45566789966655432 233 346899999998442 333 5577889999999866543 23457888888
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t 279 (726)
.++.....+..+-++. .-+.|.|-+..|+..+.++ .+|.+.+... +..+.+........ ..+.|+|++++...
T Consensus 136 stg~~~~~~~~e~~di--eWl~WHp~a~illAG~~DG---svWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDI--EWLKWHPRAHILLAGSTDG---SVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ccCceEEEeecccCce--EEEEecccccEEEeecCCC---cEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEe
Confidence 8876444444333333 2368999887777655543 5888887663 23333433222222 23557888876655
Q ss_pred c
Q 004866 280 D 280 (726)
Q Consensus 280 ~ 280 (726)
.
T Consensus 210 ~ 210 (399)
T KOG0296|consen 210 D 210 (399)
T ss_pred c
Confidence 4
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=95.27 E-value=5 Score=49.22 Aligned_cols=114 Identities=10% Similarity=0.078 Sum_probs=69.0
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc------------------ccccceeEEecCCCEEEEEEe
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ------------------AVRVSNIAWAKDGQALIYVVT 186 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~------------------~~~~~~~~WspDg~~l~y~~~ 186 (726)
.+++++++|+.| |+.|..+ ..|+++|+.++....+.. ...-..++++|++..||++..
T Consensus 627 ~GIavd~~gn~L-YVaDt~n---~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 627 QGLAYNAKKNLL-YVADTEN---HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cEEEEeCCCCEE-EEEeCCC---ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 345788888876 5556544 358888988876543211 011235789998777877642
Q ss_pred cCCCCCceEEEEEcCCCCceeEEeeec------C------C--ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 187 DQNKRPYQIYCSIIGSTDEDALLLEES------N------E--NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 187 ~~~~~~~~l~~~~l~t~~~~~lv~~~~------d------~--~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
..++|++++..++.. .++... + . ..-.+++++|||++|++.... .+.|+++|+.++
T Consensus 703 ----~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~tg 772 (1057)
T PLN02919 703 ----GQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKTG 772 (1057)
T ss_pred ----CCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCCC
Confidence 235788888765431 111100 0 0 011357899999998876543 357888988763
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.22 Score=50.71 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=71.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+.++++++++.+|||-.++.. .+|+++|+.+-+.+.... .+....+++++||..|+-. .+. ..-|.++.+
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~---GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATA-SeK---GTVIRVf~v 203 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTS---GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATA-SEK---GTVIRVFSV 203 (391)
T ss_pred ceEeeccCCCCceEEecCCCCC---ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEe-ccC---ceEEEEEEc
Confidence 4566678888889999755443 359999988765544322 4567789999999977654 332 234555566
Q ss_pred CCCCceeEEeeecCCceE---EEEEEcCCCcEEEEEEcCCCceEEEEEeC
Q 004866 201 GSTDEDALLLEESNENVY---VNIRHTKDFHFVCVHTFSTTSSKVFLINA 247 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~---~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 247 (726)
.+++ .+++--.+.+. .+++++||+++|..+++.. +-.|+.++.
T Consensus 204 ~~G~---kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEGQ---KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLEK 249 (391)
T ss_pred CCcc---EeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-eEEEEEecc
Confidence 5442 24433222222 3678999999987766543 344555443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=3.8 Score=40.93 Aligned_cols=173 Identities=12% Similarity=0.109 Sum_probs=88.9
Q ss_pred cEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEE
Q 004866 105 EQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQAL 181 (726)
Q Consensus 105 ~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l 181 (726)
-++-++.-.++.-.. .+++++|.||.+.|+.+.|..+ .|+.++++ |+.+.... .....++++..+++ +
T Consensus 8 y~~~i~~~~l~g~~~---e~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~ 78 (248)
T PF06977_consen 8 YRVVIEAKPLPGILD---ELSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-Y 78 (248)
T ss_dssp -EEEEEEEE-TT--S----EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-E
T ss_pred cEEEEeeeECCCccC---CccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-E
Confidence 355566444543322 5889999999999877776544 48889985 66554322 23456788987764 3
Q ss_pred EEEEecCCCCCceEEEEEcCCCC--cee---EEe--ee--cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCC
Q 004866 182 IYVVTDQNKRPYQIYCSIIGSTD--EDA---LLL--EE--SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS 252 (726)
Q Consensus 182 ~y~~~~~~~~~~~l~~~~l~t~~--~~~---lv~--~~--~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~ 252 (726)
+.+ . .+..+|+.+++.... .+. .-+ .. .+..-+-+++|.+.++.|++... .....||-++......
T Consensus 79 vl~-~---Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 79 VLS-E---ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGF 153 (248)
T ss_dssp EEE-E---TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS
T ss_pred EEE-E---cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCcc
Confidence 333 2 234588888884332 111 111 11 12222568999999888876543 3345688887622111
Q ss_pred CeEEee--cc-------CCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 253 GLTLIW--EC-------EGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 253 ~~~~l~--~~-------~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
...... .. .+-....+.+..++||++++.. ..|+.+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es--------~~l~~~d~~ 201 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES--------RLLLELDRQ 201 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT--------TEEEEE-TT
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCC--------CeEEEECCC
Confidence 111111 00 0111233457778999998865 346777654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.85 Score=47.40 Aligned_cols=145 Identities=15% Similarity=0.061 Sum_probs=75.5
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc-cc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
..+++++||..||-.- .+| .++|++..+-..... .. ...+.++.|||||+.|+++..+ ...||- +.+
T Consensus 148 k~vaf~~~gs~latgg-~dg----~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d----~~~VW~--~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-TDG----TLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD----SARVWS--VNT 216 (398)
T ss_pred eEEEEcCCCCEeeecc-ccc----eEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC----ceEEEE--ecc
Confidence 4568999999998762 334 589999544433222 11 3456789999999999998543 234554 444
Q ss_pred CC-ceeEEeeecCCceEEEEEEcCCC--cEEEEEEc--CCCceEEEEEeCCCCC--CCeEEeeccCCc-eEEeeeecCCE
Q 004866 203 TD-EDALLLEESNENVYVNIRHTKDF--HFVCVHTF--STTSSKVFLINAADPF--SGLTLIWECEGL-AHCIVEHHEGF 274 (726)
Q Consensus 203 ~~-~~~lv~~~~d~~~~~~~~~s~Dg--~~l~~~~~--~~~~~~l~~~d~~~~~--~~~~~l~~~~~~-~~~~~~~~g~~ 274 (726)
+. -..+.-.+.+.. +..+.++.|+ ..|.+... +.....++.+-+-.+. ...+....+... ....++.+|+.
T Consensus 217 g~~~a~~t~~~k~~~-~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 217 GAALARKTPFSKDEM-FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred CchhhhcCCcccchh-hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 32 111111122322 2345566665 33333332 2222222222222211 122222233333 34567888888
Q ss_pred EEEEecC
Q 004866 275 LYLFTDA 281 (726)
Q Consensus 275 l~~~t~~ 281 (726)
+.+-|+.
T Consensus 296 ~AlGT~d 302 (398)
T KOG0771|consen 296 LALGTMD 302 (398)
T ss_pred EEEeccC
Confidence 8888874
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.2 Score=50.22 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=68.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+.-+.|+-|.-++..+...++ -+.++++..-+..-... ....+...||||||.|+-++.- ..+|-...+.
T Consensus 51 i~yieW~ads~~ilC~~yk~~----~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF----~lriTVWSL~ 122 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDP----KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEF----DLRITVWSLN 122 (447)
T ss_pred hhheeeeccceeeeeeeeccc----eEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecc----eeEEEEEEec
Confidence 445679999999998877666 38899998776654322 2356788999999999887532 2245555565
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST 237 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~ 237 (726)
+.. -.++-..... .-+++++|||++.++.+.++
T Consensus 123 t~~-~~~~~~pK~~--~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 123 TQK-GYLLPHPKTN--VKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred cce-eEEecccccC--ceeEEECCCCceeeeeeccc
Confidence 542 1222111111 13578999999999888764
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.6 Score=46.66 Aligned_cols=132 Identities=17% Similarity=0.286 Sum_probs=87.5
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC-CCCCC--CCccc-hHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG-AYGEL--LDKRW-RSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hG-g~~~~--~~~~~-~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
+++..+.+.-| .|++.|+= .++++.|+||..|. |-... ...-| .+.++.++++ ++|+-+|.+|+-.-...
T Consensus 22 ~~e~~V~T~~G-~v~V~V~G----d~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~ 95 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYG----DPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPS 95 (326)
T ss_pred ceeeeeccccc-cEEEEEec----CCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCcc
Confidence 45555666667 46665542 23346788999997 32221 11112 3567788888 99999999998642221
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
+ .......+.+|+.+-+-.+.+. ..-+-|.-+|--+|+++-++.|..||+++-+.|++.+..
T Consensus 96 ~----p~~y~yPsmd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 96 F----PEGYPYPSMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred C----CCCCCCCCHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence 1 1222234677777766666643 223678899999999999999999999999999887653
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.85 Score=46.57 Aligned_cols=113 Identities=14% Similarity=0.056 Sum_probs=76.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc--cccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
++....||.||.+||-. +-.| .|.|+...+|...... .-....-+.|.|-+..|+.-..+ ..||.+.+
T Consensus 108 SVt~~~FshdgtlLATG-dmsG----~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~D-----GsvWmw~i 177 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATG-DMSG----KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD-----GSVWMWQI 177 (399)
T ss_pred ceEEEEEccCceEEEec-CCCc----cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCC-----CcEEEEEC
Confidence 67788999999999875 5556 4899999998655432 12345668899987766665333 36999999
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.+.. ...++.....+-- .-.+.||||.|+....+ ..|.++|+.++
T Consensus 178 p~~~-~~kv~~Gh~~~ct-~G~f~pdGKr~~tgy~d---gti~~Wn~ktg 222 (399)
T KOG0296|consen 178 PSQA-LCKVMSGHNSPCT-CGEFIPDGKRILTGYDD---GTIIVWNPKTG 222 (399)
T ss_pred CCcc-eeeEecCCCCCcc-cccccCCCceEEEEecC---ceEEEEecCCC
Confidence 8853 2334443333322 23579999998765553 34777888874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.4 Score=49.27 Aligned_cols=191 Identities=16% Similarity=0.222 Sum_probs=103.1
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEE-EEcCCCC
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC-SIIGSTD 204 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~-~~l~t~~ 204 (726)
.+-|-+++|.... ..| .|-|+|+++...+.... .+...+++-+||++.++-...|.+-+....-. .+.+..+
T Consensus 419 ~Fvpgd~~Iv~G~-k~G----el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 419 KFVPGDRYIVLGT-KNG----ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred EecCCCceEEEec-cCC----ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc
Confidence 5778888887764 344 38899999987766544 45667788899999987765443311111111 1111111
Q ss_pred ceeE------EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEE
Q 004866 205 EDAL------LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYL 277 (726)
Q Consensus 205 ~~~l------v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~ 277 (726)
..++ +.+-++. ...+..||||++|++..-+. +-.||.+|.=. -...+....-. ....+++|.+ +.+
T Consensus 494 ~k~lsl~~~rtLel~dd--vL~v~~Spdgk~LaVsLLdn-TVkVyflDtlK---FflsLYGHkLPV~smDIS~DSk-liv 566 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDD--VLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLK---FFLSLYGHKLPVLSMDISPDSK-LIV 566 (888)
T ss_pred ceeeeeccceEEecccc--EEEEEEcCCCcEEEEEeccC-eEEEEEeccee---eeeeecccccceeEEeccCCcC-eEE
Confidence 1111 1122222 24578899999999876543 45667666321 01111111111 2235667666 444
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee-CCEEEEEEEeCCeeEEEEEe
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC-KTHMALILREGRTYRLCSVS 345 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~~ 345 (726)
...++. |.+++-+|+. +.- +.++.++.. +-.+... ..+++++...+|. +..+|
T Consensus 567 TgSADK------nVKiWGLdFG-DCH----KS~fAHdDS--vm~V~F~P~~~~FFt~gKD~k--vKqWD 620 (888)
T KOG0306|consen 567 TGSADK------NVKIWGLDFG-DCH----KSFFAHDDS--VMSVQFLPKTHLFFTCGKDGK--VKQWD 620 (888)
T ss_pred eccCCC------ceEEeccccc-hhh----hhhhcccCc--eeEEEEcccceeEEEecCcce--EEeec
Confidence 444442 6888888876 322 234445432 2333333 5677888777764 34454
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.71 Score=50.22 Aligned_cols=146 Identities=10% Similarity=-0.061 Sum_probs=85.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+-+++||+||+++|-. |+ ...++|+|..+-++.. ... ...+-.++|+|=.+.|+-+.-. .....|..++.
T Consensus 303 eVCgLkws~d~~~lASG----gn-DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~ 375 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASG----GN-DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNT 375 (484)
T ss_pred eeeeeEECCCCCeeccC----CC-ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEc
Confidence 46678999999998754 33 2359999985544332 222 4467789999998888876422 23346777777
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t 279 (726)
.++.. +-.........++.||+..+.|+.+.... .++|-+++..+. .....+......+. ..++|||..+...+
T Consensus 376 ~~g~~---i~~vdtgsQVcsL~Wsk~~kEi~sthG~s-~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 376 NTGAR---IDSVDTGSQVCSLIWSKKYKELLSTHGYS-ENQITLWKYPSM-KLVAELLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred CCCcE---ecccccCCceeeEEEcCCCCEEEEecCCC-CCcEEEEecccc-ceeeeecCCcceeEEEEECCCCCEEEEec
Confidence 76641 11112233456899999999987665432 234444443331 12223333333222 34567777665544
Q ss_pred c
Q 004866 280 D 280 (726)
Q Consensus 280 ~ 280 (726)
.
T Consensus 451 ~ 451 (484)
T KOG0305|consen 451 A 451 (484)
T ss_pred c
Confidence 3
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=8.1 Score=42.93 Aligned_cols=168 Identities=11% Similarity=0.088 Sum_probs=86.3
Q ss_pred CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc----CCceEEeeeecCCEEEEEecCcccCCCCC
Q 004866 214 NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC----EGLAHCIVEHHEGFLYLFTDAAKEGQEAD 289 (726)
Q Consensus 214 d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~----~~~~~~~~~~~g~~l~~~t~~~~~~~~~~ 289 (726)
+..+....+.||||.+|++.+-.. ..||.+.-+. .-..+.+... .+.....++-+++.+++.+..
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~~~--~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~-------- 449 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTVSR--TKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN-------- 449 (691)
T ss_pred CccceeeeccCCCCCEEEEeeccc--eEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecc--------
Confidence 344444567899999999877543 3466655433 1111211111 112233445678877777732
Q ss_pred CeEEEEeeCCCCCCCCCceEEeecCCCceEEE--EeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccC
Q 004866 290 NHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL 367 (726)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (726)
.+.|....++ .+.......+.+......|.. ....+++|.+.. +...|+++++.+.+.+ .+ ...+
T Consensus 450 ~~~le~~el~-~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~~~------~l---~~rl 516 (691)
T KOG2048|consen 450 IFSLEEFELE-TPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLESH------LL---KVRL 516 (691)
T ss_pred cceeEEEEec-CcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccceee------cc---hhcc
Confidence 2456666665 444433333332211222333 334567777665 5567899998765421 11 1122
Q ss_pred CCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEE
Q 004866 368 PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNI 412 (726)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~ 412 (726)
+..+..+ +.+ .++.+.+++..++ .++|.+|+...++.+
T Consensus 517 n~~vTa~--~~~-~~~~~~lvvats~----nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 517 NIDVTAA--AFS-PFVRNRLVVATSN----NQVFEFDIEARNLTR 554 (691)
T ss_pred Ccceeee--ecc-ccccCcEEEEecC----CeEEEEecchhhhhh
Confidence 2211111 111 2455666666555 589999996655433
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.12 Score=51.69 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.|+++|++-|.. ..|.+....|... ..|+....+|.+.-. ....+++|..+..-..+.+- -....
T Consensus 1 ~pLF~fhp~~G~~--~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~-QP~GP 66 (257)
T COG3319 1 PPLFCFHPAGGSV--LAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRV-QPEGP 66 (257)
T ss_pred CCEEEEcCCCCcH--HHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHh-CCCCC
Confidence 5688899976633 5567777777666 889999999876421 22346777666544444321 12358
Q ss_pred EEEEEecccHHHHHHHHHc
Q 004866 575 LAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~ 593 (726)
..+.|+|+||.++..++.+
T Consensus 67 y~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 67 YVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred EEEEeeccccHHHHHHHHH
Confidence 9999999999999988876
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.8 Score=48.55 Aligned_cols=137 Identities=11% Similarity=0.142 Sum_probs=75.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+-+.++|||.++|.=. +|...+++|.+.|-..+..-. ..-+..+.|+|-| .||.+. ...+..+||-.+-.
T Consensus 454 Vyg~sFsPd~rfLlSc-----SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFata-s~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSC-----SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATA-SHDQTARLWSTDHN 525 (707)
T ss_pred eeeeeecccccceeec-----cCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEec-CCCceeeeeecccC
Confidence 4566899999988543 223458899988875543322 1234457788865 555543 22334467765532
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEE
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLY 276 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~ 276 (726)
.+ .++.+-+-.|-.. +.+.|++.|++-.+ ....+.++|..++. .++.++.....+. ..++|+|..|.
T Consensus 526 ~P-lRifaghlsDV~c---v~FHPNs~Y~aTGS---sD~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 526 KP-LRIFAGHLSDVDC---VSFHPNSNYVATGS---SDRTVRLWDVSTGN-SVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred Cc-hhhhcccccccce---EEECCcccccccCC---CCceEEEEEcCCCc-EEEEecCCCCceEEEEEcCCCceEe
Confidence 21 2222212222221 57899999986432 23456777877742 3444444333333 35678887554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.19 Score=51.05 Aligned_cols=116 Identities=8% Similarity=0.141 Sum_probs=73.7
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+-.+..++++|--..|.-+...++ .|.++|+.++.++.... .-....++|+| ..+-|+.. ++.+.||.+|
T Consensus 187 ~Dti~svkfNpvETsILas~~sDr----sIvLyD~R~~~Pl~KVi~~mRTN~IswnP--eafnF~~a---~ED~nlY~~D 257 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDR----SIVLYDLRQASPLKKVILTMRTNTICWNP--EAFNFVAA---NEDHNLYTYD 257 (433)
T ss_pred CCceeEEecCCCcchheeeeccCC----ceEEEecccCCccceeeeeccccceecCc--cccceeec---cccccceehh
Confidence 346677788998888766543223 39999999998876544 44667899999 45556543 3456799998
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+..-....-++...- .-..++.+||-|+-++-.+.+ ..|.+++...
T Consensus 258 mR~l~~p~~v~~dhv-sAV~dVdfsptG~EfvsgsyD---ksIRIf~~~~ 303 (433)
T KOG0268|consen 258 MRNLSRPLNVHKDHV-SAVMDVDFSPTGQEFVSGSYD---KSIRIFPVNH 303 (433)
T ss_pred hhhhcccchhhcccc-eeEEEeccCCCcchhcccccc---ceEEEeecCC
Confidence 764433333443221 223578899999987644432 2355555544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.8 Score=42.01 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=104.6
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
+...+||.|.++|.- +|.|. -|+|+|+..-+.-+... ...+..+.|....+.|+-...+ ..|.++|.
T Consensus 103 vk~~af~~ds~~llt----gg~ek-llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd-----~tVRLWD~ 172 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLT----GGQEK-LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD-----KTVRLWDH 172 (334)
T ss_pred eeeEEecccchhhhc----cchHH-HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC-----CceEEEEe
Confidence 455677777777643 34433 47888887655433222 3456678899888888665322 24667777
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC---ceEEeeeecCCEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG---LAHCIVEHHEGFLYL 277 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~~~~~~~~g~~l~~ 277 (726)
.++.....+.- +.+ ..++..|+||++|.+...+ .|-.+|..+ +.++....- .....+.|+. .+|+
T Consensus 173 rTgt~v~sL~~-~s~--VtSlEvs~dG~ilTia~gs----sV~Fwdaks----f~~lKs~k~P~nV~SASL~P~k-~~fV 240 (334)
T KOG0278|consen 173 RTGTEVQSLEF-NSP--VTSLEVSQDGRILTIAYGS----SVKFWDAKS----FGLLKSYKMPCNVESASLHPKK-EFFV 240 (334)
T ss_pred ccCcEEEEEec-CCC--CcceeeccCCCEEEEecCc----eeEEecccc----ccceeeccCccccccccccCCC-ceEE
Confidence 77652222221 111 2356789999999876543 356666654 222332222 1223444544 5555
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEec
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSL 346 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l 346 (726)
..+. .++++++|.. .... .........+ .+-.+.... +.+|...+++|.-+|+....
T Consensus 241 aGge--------d~~~~kfDy~-TgeE--i~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 241 AGGE--------DFKVYKFDYN-TGEE--IGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ecCc--------ceEEEEEecc-CCce--eeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 4443 3778888876 2211 1110111111 233344333 57788889999989888764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.87 Score=47.33 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=64.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc-cc---ccccceeEEecCCC--EEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ---AVRVSNIAWAKDGQ--ALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~-~~---~~~~~~~~WspDg~--~l~y~~~~~~~~~~~l~ 196 (726)
.+.++.|||||+.||++... ...||++.+|..++. +. ...+....|+.|+. .++..........-.++
T Consensus 188 eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~ 261 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGAD------SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC 261 (398)
T ss_pred ccccceeCCCCcEEEEecCC------ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence 67888999999999998422 378999999965542 21 33567788888872 23222222111111222
Q ss_pred EEEcCCC----CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 197 CSIIGST----DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 197 ~~~l~t~----~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
...+..+ .....+.. .. -...+.+|+||+++++.+.++ .|-++++.+
T Consensus 262 ~~~~w~~~~~l~~~~~~~~--~~-siSsl~VS~dGkf~AlGT~dG---sVai~~~~~ 312 (398)
T KOG0771|consen 262 DISLWSGSNFLRLRKKIKR--FK-SISSLAVSDDGKFLALGTMDG---SVAIYDAKS 312 (398)
T ss_pred Eeeeeccccccchhhhhhc--cC-cceeEEEcCCCcEEEEeccCC---cEEEEEece
Confidence 2222222 11111111 00 123567899999999988743 455555543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.9 Score=46.38 Aligned_cols=153 Identities=11% Similarity=0.059 Sum_probs=83.3
Q ss_pred EeeceeeCCCCCE-EEEEEeCCCCcEEEEEEEECCCC----ce--------ecccc---ccccceeEEecCCCEEEEEEe
Q 004866 123 YEELSEVSPDHKF-LAYTMYDKDNDYFTLSVRNLNSG----AL--------CSKPQ---AVRVSNIAWAKDGQALIYVVT 186 (726)
Q Consensus 123 ~~~~~~~SPDG~~-la~~~~~~g~e~~~l~v~dl~tg----~~--------~~~~~---~~~~~~~~WspDg~~l~y~~~ 186 (726)
.+..++|-|-+.. ||+.. +.| |.+|..+.- .. .++.. ...+.++.|.+||..+.-.+.
T Consensus 142 nvtclawRPlsaselavgC-r~g-----IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGC-RAG-----ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred ceeEEEeccCCcceeeeee-cce-----eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 4556778886655 44443 444 666654321 11 11111 124578999999987765543
Q ss_pred cCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEE-eCCCCCCCeEEeeccCCceE
Q 004866 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI-NAADPFSGLTLIWECEGLAH 265 (726)
Q Consensus 187 ~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~-d~~~~~~~~~~l~~~~~~~~ 265 (726)
. ...+.+.+.++++...+... .-+. +.-+.|||||.+|+-.+-+. ...||-. ..-+ .+...+.+. ....
T Consensus 216 g----sssi~iWdpdtg~~~pL~~~-glgg-~slLkwSPdgd~lfaAt~da-vfrlw~e~q~wt--~erw~lgsg-rvqt 285 (445)
T KOG2139|consen 216 G----SSSIMIWDPDTGQKIPLIPK-GLGG-FSLLKWSPDGDVLFAATCDA-VFRLWQENQSWT--KERWILGSG-RVQT 285 (445)
T ss_pred C----cceEEEEcCCCCCccccccc-CCCc-eeeEEEcCCCCEEEEecccc-eeeeehhcccce--ecceeccCC-ceee
Confidence 3 23677888887764333311 1122 33478999999987554432 2344411 1111 112222222 2223
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.-|+|+|+.|+|..... ..||.+..+
T Consensus 286 acWspcGsfLLf~~sgs--------p~lysl~f~ 311 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGS--------PRLYSLTFD 311 (445)
T ss_pred eeecCCCCEEEEEEcCC--------ceEEEEeec
Confidence 45789999988887643 347777654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.3 Score=44.99 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=66.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCE---------EEEEEecCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQA---------LIYVVTDQNKR 191 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~---------l~y~~~~~~~~ 191 (726)
.+..++|.|-|+.||-.++ ++ +|.+|....+....... ...+..+.|||+|.. |+-...
T Consensus 361 ~V~alk~n~tg~LLaS~Sd-D~----TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----- 430 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSD-DG----TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----- 430 (524)
T ss_pred ceEEEEECCCCceEEEecC-CC----eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec-----
Confidence 5777889999998887654 23 58888865443322111 224567889998852 222211
Q ss_pred CceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 192 PYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
..-|.++++..+.. .-.|.....+. .++++||||+||+..+.++ -|.+++..+
T Consensus 431 dstV~lwdv~~gv~-i~~f~kH~~pV-ysvafS~~g~ylAsGs~dg---~V~iws~~~ 483 (524)
T KOG0273|consen 431 DSTVKLWDVESGVP-IHTLMKHQEPV-YSVAFSPNGRYLASGSLDG---CVHIWSTKT 483 (524)
T ss_pred CCeEEEEEccCCce-eEeeccCCCce-EEEEecCCCcEEEecCCCC---eeEeccccc
Confidence 23567777776641 12232222222 2578999999998544433 466666655
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.7 Score=44.75 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=71.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+....+|+||++|..+- |+ .|.++|..+-+.+.-.. ..++.+.+-+|+. .+|..- +....+|.+|..|
T Consensus 187 VtSlEvs~dG~ilTia~---gs---sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaG----ged~~~~kfDy~T 255 (334)
T KOG0278|consen 187 VTSLEVSQDGRILTIAY---GS---SVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAG----GEDFKVYKFDYNT 255 (334)
T ss_pred CcceeeccCCCEEEEec---Cc---eeEEeccccccceeeccCccccccccccCCC-ceEEec----CcceEEEEEeccC
Confidence 55678999999987652 22 38899998876654333 6678888999986 565542 3456899999988
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+.+ +-.|......-..-+.+||||..-+ +-+.+++-.||......
T Consensus 256 geE-i~~~nkgh~gpVhcVrFSPdGE~yA-sGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 256 GEE-IGSYNKGHFGPVHCVRFSPDGELYA-SGSEDGTIRLWQTTPGK 300 (334)
T ss_pred Cce-eeecccCCCCceEEEEECCCCceee-ccCCCceEEEEEecCCC
Confidence 853 3333211111123478899997433 22333455677665543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=6.2 Score=39.42 Aligned_cols=194 Identities=13% Similarity=0.067 Sum_probs=99.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
-+..+.||+|.++|+-+ +.+| .|.|||.-|...+.... ..-+...++||.|+.++---.+ +..-++++
T Consensus 57 Ki~~~~ws~Dsr~ivSa-SqDG----klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-----N~Csiy~l 126 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSA-SQDG----KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-----NKCSIYPL 126 (343)
T ss_pred ceeeeEecCCcCeEEee-ccCC----eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC-----ceeEEEec
Confidence 35567899999998665 4556 38999988875544322 2346778999999988775433 23344455
Q ss_pred CCCCce---eEEeeecCCceEEE-EEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeee-cCCE
Q 004866 201 GSTDED---ALLLEESNENVYVN-IRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEH-HEGF 274 (726)
Q Consensus 201 ~t~~~~---~lv~~~~d~~~~~~-~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~-~g~~ 274 (726)
.+...+ .+.-+-....-|++ ..+.+|+. |+ +.+ +....-++|++++. ..+.+....+++ ...++| +++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-il-T~S--GD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-IL-TGS--GDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCc-eE-ecC--CCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCe
Confidence 443211 11111122223443 55666554 43 222 23345667888742 223333333332 234556 4443
Q ss_pred EEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
|+...-+. ..+|+.+.. +.-..-+ +..+..|..+..+. +.-+.+..+++.-++ +|+.
T Consensus 202 -FvSg~cD~------~aklWD~R~------~~c~qtF-~ghesDINsv~ffP~G~afatGSDD~tcRl--yDlR 259 (343)
T KOG0286|consen 202 -FVSGGCDK------SAKLWDVRS------GQCVQTF-EGHESDINSVRFFPSGDAFATGSDDATCRL--YDLR 259 (343)
T ss_pred -EEeccccc------ceeeeeccC------cceeEee-cccccccceEEEccCCCeeeecCCCceeEE--Eeec
Confidence 33322221 234544322 1122222 33345677777775 455556677775555 4554
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.42 Score=52.13 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc-h--------------------HHHHHHHHCCcEEEEEccC
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW-R--------------------SELKSLLDRGWVVAFADVR 532 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~-~--------------------~~~~~l~~~G~~v~~~d~R 532 (726)
.+..+..|++...+ .....|+|+++-||||.+....+ . ..-..|.+. ..++.+|.+
T Consensus 48 ~~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllfiDqP 124 (433)
T PLN03016 48 ENVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM-ANIIFLDQP 124 (433)
T ss_pred CCeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-CcEEEecCC
Confidence 35667776665543 23467999999999985431100 0 001223332 567888866
Q ss_pred CCCCCCCcccccccccCC-CCcHHHHHHHHH-HHHHcCCCCCCcEEEEEecccHHHHHHHHHc----C-----CC-ceeE
Q 004866 533 GGGGGGKKWHHDGRRTKK-LNSIKDFISCAR-FLIEKEIVKEHKLAGWGYSAGGLLVAAAINC----C-----PD-LFRA 600 (726)
Q Consensus 533 G~g~~g~~~~~~~~~~~~-~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~----~-----p~-~f~a 600 (726)
-+.||... ........ ....+|+...++ |+...+..-...+.|+|.||||..+-.++.+ . +. -+++
T Consensus 125 vGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 55555422 11111111 112346655554 3434443345679999999999766555432 1 11 4788
Q ss_pred EEEeCCccccc
Q 004866 601 VVLEVPFLDAT 611 (726)
Q Consensus 601 ~v~~~p~~d~~ 611 (726)
++...|+++..
T Consensus 203 i~iGNg~t~~~ 213 (433)
T PLN03016 203 YMLGNPVTYMD 213 (433)
T ss_pred eEecCCCcCch
Confidence 89999987764
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.6 Score=42.82 Aligned_cols=179 Identities=18% Similarity=0.138 Sum_probs=91.9
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCC-----cEEEEEccCCCCCCCCccccccc-------ccCCCCcHHHH---
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRG-----WVVAFADVRGGGGGGKKWHHDGR-------RTKKLNSIKDF--- 557 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G-----~~v~~~d~RG~g~~g~~~~~~~~-------~~~~~~~~~D~--- 557 (726)
..|+ |++||.-|.. .++..++..|+.+| -.++.+|.-|+=..-........ ......+..|.
T Consensus 45 ~iPT-IfIhGsgG~a--sS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIPT-IFIHGSGGTA--SSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccce-EEEecCCCCh--hHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 4565 4667654422 34566666666655 45777787775321111111100 01122334443
Q ss_pred -HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC------CCceeEEEEeCCcccccccccCCCCCCChhhhcccC
Q 004866 558 -ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 630 (726)
Q Consensus 558 -~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g 630 (726)
..+..+|.++-.+ .++=++||||||......+..+ |.+=+-+.+.+|+- ......+.. . ..+..-+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN-~~~l~~de~--v--~~v~~~~ 194 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN-VGNLVPDET--V--TDVLKDG 194 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc-ccccCCCcc--h--heeeccC
Confidence 4566777766433 6899999999998887777653 55544444445543 111111111 1 1111112
Q ss_pred CC-CChhHHHHHHhcCcccccccCCCCCeEEEEecC------CCCcChHHHHHHHHHHHhcC
Q 004866 631 YP-GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSF------NTRFGVWEAAKWVARVREST 685 (726)
Q Consensus 631 ~~-~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~------D~~V~~~~~~~~~~~L~~~~ 685 (726)
.+ .....++++... +..+.+ ..-+|+|-|.. |-+||...+...+.-+...+
T Consensus 195 ~~~~~t~y~~y~~~n--~k~v~~--~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ 252 (288)
T COG4814 195 PGLIKTPYYDYIAKN--YKKVSP--NTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNG 252 (288)
T ss_pred ccccCcHHHHHHHhc--ceeCCC--CcEEEEEecccccCCcCCCceechHhHHHHHHhccCc
Confidence 11 111122333221 111222 34467888763 56899989888888888775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.17 Score=56.67 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=47.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEec
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTD 187 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~ 187 (726)
.+.++.+|||||||+-++ .++ .|++||+-||..+.... .....++.+||.|..|+-+..+
T Consensus 578 ritd~~FS~DgrWlisas-mD~----tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISAS-MDS----TIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ceeeeEeCCCCcEEEEee-cCC----cEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 688899999999998774 334 59999999998765433 4456789999999999887544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.67 Score=49.24 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=63.1
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
..+.|-| .||... ..| .++|+|.++...+.+-. ....+.+.++|||..|+..+.| ..||++.+.....
T Consensus 413 ~~fhpsg-~va~Gt-~~G----~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d-----~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGT-ATG----RWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD-----NHIYIYRVSANGR 481 (626)
T ss_pred eeccCcc-eEEEee-ccc----eEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC-----CeEEEEEECCCCc
Confidence 3578888 777764 445 47899999865554322 3345678999999999987544 3688887765542
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEE
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCV 232 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~ 232 (726)
....+..-...+...+.||+|+++|.-
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEe
Confidence 222222222356677899999999863
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.91 E-value=8.8 Score=41.73 Aligned_cols=200 Identities=9% Similarity=-0.012 Sum_probs=104.9
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCC--EEEEEEecCCCCCceEEEEEcCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQ--ALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~--~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.++||+|..+.|..+. + .++++++.+-+...-.. ..+++.++.||-+. .+++-.-...+.+..|.++....
T Consensus 130 ~~qfs~dEsl~arlv~---n---ev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVS---N---EVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred ccccccchhhhhhhhc---c---eEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 3579999999888763 3 37888887643222111 44678889998744 33322223334555565555542
Q ss_pred CCceeEEeeecCCceE----EEEEEcCCCcEEEEEEcCC---------CceEEEEEeCCCCCCCeEEeeccCCceEEeee
Q 004866 203 TDEDALLLEESNENVY----VNIRHTKDFHFVCVHTFST---------TSSKVFLINAADPFSGLTLIWECEGLAHCIVE 269 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~----~~~~~s~Dg~~l~~~~~~~---------~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 269 (726)
......+ ....|| +...|.+-|.-|++.+... +.+.||+++..+ .....++......+.+.|+
T Consensus 204 ~~~~~~~---a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 204 EGQHQPV---ANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSVPLLKEGPVHDVTWS 279 (566)
T ss_pred ccccchh---hhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEEecCCCCCceEEEEC
Confidence 2111111 112233 5678999998876654321 236899999984 2222233222223455678
Q ss_pred ecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 270 HHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 270 ~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+.+..|.++.---. .++-..++. .+..--+++.+ ..-.-+.+.++.|++..--+-...+-++|..+
T Consensus 280 ~s~~EF~VvyGfMP-------Akvtifnlr-----~~~v~df~egp-RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 280 PSGREFAVVYGFMP-------AKVTIFNLR-----GKPVFDFPEGP-RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCEEEEEEeccc-------ceEEEEcCC-----CCEeEeCCCCC-ccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 88888887754211 223334443 11111112222 22223455555666555444344677777654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=6 Score=38.98 Aligned_cols=119 Identities=10% Similarity=0.019 Sum_probs=75.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+=.+.++.|.++|.-. +....+.+||+++|+.+..-. ...+..+.|+++|..++++....-.....|-..++.
T Consensus 54 avW~~Did~~s~~liTG-----SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITG-----SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred eEEEEEecCCcceeeec-----cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 34344567777776443 334569999999998776533 335667899999999998864444445567677765
Q ss_pred CCC------ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 202 STD------EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 202 t~~------~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
... +..+....++.. ....-|+|-+++|+....+ ..|-.+|+.++
T Consensus 129 ~~~~~~~s~ep~~kI~t~~sk-it~a~Wg~l~~~ii~Ghe~---G~is~~da~~g 179 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSK-ITSALWGPLGETIIAGHED---GSISIYDARTG 179 (327)
T ss_pred CChhhhcccCceEEecCCccc-eeeeeecccCCEEEEecCC---CcEEEEEcccC
Confidence 321 112222222222 2456799999998754433 35778888774
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.32 Score=50.29 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=68.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-c-----cccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-A-----VRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~-----~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.+..+.+|+||..|.-. .+.+ .|-++|+.+.+...... . .....+.||||+++++--..+ ..||
T Consensus 343 ~vtSl~ls~~g~~lLss-sRDd----tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----gsv~ 412 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSS-SRDD----TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----GSVY 412 (459)
T ss_pred ceeeEeeccCCeEEeee-cCCC----ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC-----CcEE
Confidence 56778899999998765 3333 48899999988766432 1 135678999999987765433 3699
Q ss_pred EEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEE
Q 004866 197 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCV 232 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~ 232 (726)
++++.+++-...+-......-...++|+|.|++|+-
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 999988873222322222212346899999999863
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.9 Score=43.82 Aligned_cols=119 Identities=11% Similarity=0.100 Sum_probs=71.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+...++.|||-.++- |..+..|.|||+.++..+.... .+.+..+.|+.+|=+|+....|. .|.++||.
T Consensus 350 ~ts~~fHpDgLifgt-----gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-----~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGT-----GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-----SVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEec-----cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-----eEEEEEeh
Confidence 445678888854432 3444579999999886443322 34667899999998887764332 38888886
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW 258 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 258 (726)
... ....+.-.+..-...+.+...|++|.+. +..-.||..+-.+ ..++.+.
T Consensus 420 Kl~-n~kt~~l~~~~~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~--k~W~~~~ 470 (506)
T KOG0289|consen 420 KLK-NFKTIQLDEKKEVNSLSFDQSGTYLGIA---GSDLQVYICKKKT--KSWTEIK 470 (506)
T ss_pred hhc-ccceeeccccccceeEEEcCCCCeEEee---cceeEEEEEeccc--ccceeee
Confidence 443 1112222221112456788899999876 2334566666544 4455443
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.69 Score=50.46 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=77.0
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc-h--------------------HHHHHHHHCCcEE
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW-R--------------------SELKSLLDRGWVV 526 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~-~--------------------~~~~~l~~~G~~v 526 (726)
+.+....|..+-.|++.... .....|+|+++-||||.+..... . ..-..|.+. ..+
T Consensus 44 ~~v~~~~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anl 120 (437)
T PLN02209 44 IGIGEEENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT-ANI 120 (437)
T ss_pred EEecCCCCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc-CcE
Confidence 33433445666666665443 23457999999999986522111 0 000133333 467
Q ss_pred EEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHH-HcCCCCCCcEEEEEecccHHHHHHHHHc----C-----CC
Q 004866 527 AFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLI-EKEIVKEHKLAGWGYSAGGLLVAAAINC----C-----PD 596 (726)
Q Consensus 527 ~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~l~~~~~~~----~-----p~ 596 (726)
+.+|.+-+.||...-..... ..-....+|+...++... ..+......+.|+|.||||..+-.++.. . +.
T Consensus 121 lfiDqPvGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~ 199 (437)
T PLN02209 121 IFLDQPVGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPP 199 (437)
T ss_pred EEecCCCCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCc
Confidence 88887766655422111011 111123466666555443 3343445689999999999765554431 1 11
Q ss_pred -ceeEEEEeCCccccc
Q 004866 597 -LFRAVVLEVPFLDAT 611 (726)
Q Consensus 597 -~f~a~v~~~p~~d~~ 611 (726)
-+++++...|++|..
T Consensus 200 inl~Gi~igng~td~~ 215 (437)
T PLN02209 200 INLQGYVLGNPITHIE 215 (437)
T ss_pred eeeeeEEecCcccChh
Confidence 368888888988753
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.32 Score=53.78 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=87.3
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEEccCCCCCC----CCcccc--cccccC
Q 004866 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGG----GKKWHH--DGRRTK 549 (726)
Q Consensus 477 ~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~----g~~~~~--~~~~~~ 549 (726)
.|...+.+|.+. +++ .+..+-||+.......-. .....-+.+||+++.-|- ||.+. ...|.. ....++
T Consensus 16 ~i~fev~LP~~W--NgR--~~~~GgGG~~G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~df 90 (474)
T PF07519_consen 16 NIRFEVWLPDNW--NGR--FLQVGGGGFAGGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDF 90 (474)
T ss_pred eEEEEEECChhh--ccC--eEEECCCeeeCcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHH
Confidence 777778888743 232 555555666544322110 013455678999999884 22222 122220 111234
Q ss_pred CCCcHHHHHHHHHHHHHcCC-CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc
Q 004866 550 KLNSIKDFISCARFLIEKEI-VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~-~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 612 (726)
+...+.+...+.+.|++.-| ..|++-...|.|-||-.++.++-++|+.|.++|+.+|.+++..
T Consensus 91 a~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~ 154 (474)
T PF07519_consen 91 AYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTH 154 (474)
T ss_pred HhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHH
Confidence 45566777778888887644 3688999999999999999999999999999999999887643
|
It also includes several bacterial homologues of unknown function. |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=12 Score=40.34 Aligned_cols=150 Identities=9% Similarity=0.059 Sum_probs=87.1
Q ss_pred cccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-----ccc--ccccceeEEecCCCEEEEEE
Q 004866 113 QEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-----KPQ--AVRVSNIAWAKDGQALIYVV 185 (726)
Q Consensus 113 ~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-----~~~--~~~~~~~~WspDg~~l~y~~ 185 (726)
++.-.|+ .-.++.+++-|.|-+++- |+-.|++.+||+.+-.... +.. ...+.++.||+.|..|+...
T Consensus 160 Ei~l~hg-tk~Vsal~~Dp~GaR~~s-----Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 160 EIQLKHG-TKIVSALAVDPSGARFVS-----GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred eEeccCC-ceEEEEeeecCCCceeee-----ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 3333444 778899999999998743 4556889999998753221 111 22457899999999998874
Q ss_pred ecCCCCCceEEEEEcCCCCceeEEeeecC----------C--ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC
Q 004866 186 TDQNKRPYQIYCSIIGSTDEDALLLEESN----------E--NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG 253 (726)
Q Consensus 186 ~~~~~~~~~l~~~~l~t~~~~~lv~~~~d----------~--~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~ 253 (726)
.. .+..++|.+.-+ .+-+-..| + .-.....|.|+.+..++++...++-.||-++ .....
T Consensus 234 g~-----aqakl~DRdG~~--~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~--~~k~q 304 (641)
T KOG0772|consen 234 GS-----AQAKLLDRDGFE--IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN--NTKSQ 304 (641)
T ss_pred cC-----cceeEEccCCce--eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC--Cchhh
Confidence 32 123333322211 00010000 0 0011347999999999988877766666544 33344
Q ss_pred eEEeeccCC------ceEEeeeecCCEEEE
Q 004866 254 LTLIWECEG------LAHCIVEHHEGFLYL 277 (726)
Q Consensus 254 ~~~l~~~~~------~~~~~~~~~g~~l~~ 277 (726)
.+.+..+.. ...+.|++||..++-
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhh
Confidence 445544332 234567788876443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.1 Score=42.02 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=73.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC-------CCceecc-c-cccccceeEEecCCCEEEEEEecCCCCCc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-------SGALCSK-P-QAVRVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~-------tg~~~~~-~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
.+....||++|++++++.|..=+....|.++|+. +.++... . .........|+|-++.|++.- ...
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-----e~G 169 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-----EDG 169 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-----CCC
Confidence 4556679999999999988765556778999987 3332322 1 234667789999999998863 334
Q ss_pred eEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 194 QIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 194 ~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.|-++|+.++.+-+-.-++. ..-..++++|+|..+.+-. ...++.. ++|..+
T Consensus 170 ~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~d~T~FiT~-s~Dttak--l~D~~t 221 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEH-SSKINDLQFSRDRTYFITG-SKDTTAK--LVDVRT 221 (327)
T ss_pred cEEEEEcccCceeeechhhh-ccccccccccCCcceEEec-ccCccce--eeeccc
Confidence 68888887764211110111 1122357889999986543 3333333 344444
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.29 Score=49.90 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=55.8
Q ss_pred CCcEEEeecccccc-----cCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeE
Q 004866 103 KIEQKLLDYNQEAE-----RFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIA 173 (726)
Q Consensus 103 ~~~~~lld~n~~~~-----~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~ 173 (726)
.++-+|+|...+.. .|.| .+..+++||||.+||-+++ .| .-|+|..+.+|+.+.... ...+.+++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llATASe-KG---TVIRVf~v~~G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLATASE-KG---TVIRVFSVPEGQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred CceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEEecc-Cc---eEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence 34566777654432 2332 6788899999999999875 45 369999999998765433 23667899
Q ss_pred EecCCCEEEEEE
Q 004866 174 WAKDGQALIYVV 185 (726)
Q Consensus 174 WspDg~~l~y~~ 185 (726)
|+||++.|..+.
T Consensus 226 Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 226 FSPDSQFLAASS 237 (391)
T ss_pred ECCCCCeEEEec
Confidence 999999877764
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.096 Score=51.51 Aligned_cols=46 Identities=26% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCC----CceeEEEE
Q 004866 558 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP----DLFRAVVL 603 (726)
Q Consensus 558 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p----~~f~a~v~ 603 (726)
..|++|+.+.--..+++|.+.|||-||.+|..++...+ +++..++.
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~ 118 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYS 118 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEE
Confidence 45666665442223457999999999999999887643 34555553
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.3 Score=44.00 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=80.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc-ccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.++-+.|.|--.-+..+. |. .+++.+||+.||+.+.. .-.+.+.++.|+-||..|.-+..| .+|.++|..
T Consensus 133 rVg~V~wHPtA~NVLlsa---g~-Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-----KkvRv~dpr 203 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSA---GS-DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-----KKVRVIDPR 203 (472)
T ss_pred eEEEEeecccchhhHhhc---cC-CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-----ceeEEEcCC
Confidence 567778888777766653 22 35799999999986643 225677889999999988766544 367777776
Q ss_pred CCCceeEEeeecC--CceEEEEEEcCCCcEEEEEEcC-CCceEEEEEeCCCCCCC--eEEeeccCCceEEeeeecCCEEE
Q 004866 202 STDEDALLLEESN--ENVYVNIRHTKDFHFVCVHTFS-TTSSKVFLINAADPFSG--LTLIWECEGLAHCIVEHHEGFLY 276 (726)
Q Consensus 202 t~~~~~lv~~~~d--~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~~~~~~--~~~l~~~~~~~~~~~~~~g~~l~ 276 (726)
++. ++.+... +.--..+-|-.+|+ |+-+--+ .+..++-++|...-... ...+....+....+.++|.+.+|
T Consensus 204 ~~~---~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 204 RGT---VVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred CCc---EeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence 653 2222110 00112244566777 3322222 23355666665442211 12222222223345566666666
Q ss_pred EEecC
Q 004866 277 LFTDA 281 (726)
Q Consensus 277 ~~t~~ 281 (726)
+..-.
T Consensus 280 l~GKG 284 (472)
T KOG0303|consen 280 LCGKG 284 (472)
T ss_pred EEecC
Confidence 65443
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.35 E-value=12 Score=43.28 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=106.9
Q ss_pred EeeceeeCCCCCEEEEEE----------------------eCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCC
Q 004866 123 YEELSEVSPDHKFLAYTM----------------------YDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQ 179 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~----------------------~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~ 179 (726)
.+...+|||+|+.+++.. +..|.+..+++++|.++ ....... ...+..+.|.+|++
T Consensus 102 ~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 180 (620)
T COG1506 102 GVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGR 180 (620)
T ss_pred ccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCc
Confidence 456778999999998821 11122456777777766 2222211 33455677777778
Q ss_pred EEEEEEecCCCCC--ceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-----ceEEEEEeCCCCCC
Q 004866 180 ALIYVVTDQNKRP--YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-----SSKVFLINAADPFS 252 (726)
Q Consensus 180 ~l~y~~~~~~~~~--~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-----~~~l~~~d~~~~~~ 252 (726)
.++.........+ ...+.....++.. ....+.......+.+.+||+.+.+...... ...+++++.+. +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 255 (620)
T COG1506 181 LVASIRLDDDADPWVTNLYVLIEGNGEL---ESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGEL--G 255 (620)
T ss_pred eeEEeeeccccCCceEeeEEEecCCCce---EEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccc--c
Confidence 7877766543111 1222222222222 111223333456788999998877765433 24566666222 1
Q ss_pred CeEEeeccCC---c-eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCE
Q 004866 253 GLTLIWECEG---L-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTH 328 (726)
Q Consensus 253 ~~~~l~~~~~---~-~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 328 (726)
.........+ + ......-++..+++++..... ...++..... . .. ..+. ..+...+..++..++.
T Consensus 256 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~l~~~~~~-~--~~--~~~~-~~~~~~v~~f~~~~~~ 324 (620)
T COG1506 256 EVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGGG-----SSPLFRVDDL-G--GG--VEGL-SGDDGGVPGFDVDGRK 324 (620)
T ss_pred ccceeeccCCcccCcHHhccccCCCcEEEEEecCCC-----ceEEEEEecc-C--Cc--eeee-cCCCceEEEEeeCCCE
Confidence 1111111110 0 000111356667776665321 3556665532 1 11 2222 2233567777777788
Q ss_pred EEEEEEeCCe-eEEEEEec
Q 004866 329 MALILREGRT-YRLCSVSL 346 (726)
Q Consensus 329 lv~~~~~~g~-~~l~~~~l 346 (726)
+++....... +++++++.
T Consensus 325 ~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 325 LALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred EEEEecCCCCccceEEEcC
Confidence 8888777664 57887764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.79 Score=50.27 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=43.9
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 184 (726)
+..+.++++-|||..|.... |+ .++++|+..|..++... .+.+..++||.||+.++-.
T Consensus 12 ~hci~d~afkPDGsqL~lAA---g~---rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAA---GS---RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred ccchheeEECCCCceEEEec---CC---EEEEEeCCCcccccccccccceEEEEEEccCCceeccC
Confidence 33567788999999998874 33 49999999987665432 4567789999999977543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.3 Score=45.18 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=50.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..++||++|+.+.-++ .+ ..|.+||++||..+.-.. ......+.+-||+..+|+.-. ...+|..+|+.
T Consensus 260 ~Vrd~~~s~~g~~fLS~s-fD----~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~----sd~ki~~wDiR 330 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSAS-FD----RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG----SDKKIRQWDIR 330 (503)
T ss_pred hhhhhhccccCCeeeeee-cc----eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec----CCCcEEEEecc
Confidence 466778999999875543 22 359999999998775433 334466889999977777643 22367777776
Q ss_pred CCC
Q 004866 202 STD 204 (726)
Q Consensus 202 t~~ 204 (726)
+++
T Consensus 331 s~k 333 (503)
T KOG0282|consen 331 SGK 333 (503)
T ss_pred chH
Confidence 653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=3.9 Score=40.79 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=70.5
Q ss_pred EeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+..+.+|| |++..+-. |-+ ..-++||+..|..++... ...+..+.|-|+|..|+--+.| ....++|
T Consensus 188 DV~slsl~p~~~ntFvSg----~cD-~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD-----~tcRlyD 257 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSG----GCD-KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD-----ATCRLYD 257 (343)
T ss_pred cEEEEecCCCCCCeEEec----ccc-cceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC-----ceeEEEe
Confidence 566778999 88865432 222 246899999997776543 3467789999999877654322 2455667
Q ss_pred cCCCCceeEEeeecCCce-EEEEEEcCCCcEEEEEEcCCCceEEEEEeC
Q 004866 200 IGSTDEDALLLEESNENV-YVNIRHTKDFHFVCVHTFSTTSSKVFLINA 247 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~-~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 247 (726)
|...+ ...+|+.....+ ..++.+|..||.|+....+ ....++|.
T Consensus 258 lRaD~-~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDt 302 (343)
T KOG0286|consen 258 LRADQ-ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDT 302 (343)
T ss_pred ecCCc-EEeeeccCcccCCceeEEEcccccEEEeeecC---CceeEeec
Confidence 76653 455676433322 2578999999988754322 23445554
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.3 Score=41.58 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=56.0
Q ss_pred CCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CC--cEEEEEccCCCCCCCCccccccccc-CCCCcHHHHHHHHHHHH
Q 004866 490 KENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RG--WVVAFADVRGGGGGGKKWHHDGRRT-KKLNSIKDFISCARFLI 565 (726)
Q Consensus 490 ~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G--~~v~~~d~RG~g~~g~~~~~~~~~~-~~~~~~~D~~~~~~~l~ 565 (726)
.....|+|+++-|.||.. .-|......|.. .+ .-|..+-.-|+-.....-.++.... ...-+.+|.+.=--..+
T Consensus 25 ~~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFi 102 (301)
T KOG3975|consen 25 SGEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFI 102 (301)
T ss_pred CCCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHH
Confidence 345679999999998843 223333333332 22 3344444444444332222222221 12234555544322333
Q ss_pred HcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 566 EKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 566 ~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
++-.....||.++|||-|+||++.++..
T Consensus 103 k~~~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 103 KEYVPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred HHhCCCCCEEEEEecchhHHHHHHHhhh
Confidence 3333344799999999999999999873
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.3 Score=50.03 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=66.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+-++.||-++-.|--++|+ ++++|++...+-+.+.. .+.+..++|.|-....|.+-.- ..+|.++.|-
T Consensus 371 DILDlSWSKn~fLLSSSMDK------TVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL----D~KvRiWsI~ 440 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDK------TVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL----DGKVRLWSIS 440 (712)
T ss_pred hheecccccCCeeEeccccc------cEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc----ccceEEeecC
Confidence 45567899988777655543 58999999888777655 5567889999966666555322 2467777774
Q ss_pred CCCceeEEeeecCC-ceEEEEEEcCCCcEEEEEEcCC
Q 004866 202 STDEDALLLEESNE-NVYVNIRHTKDFHFVCVHTFST 237 (726)
Q Consensus 202 t~~~~~lv~~~~d~-~~~~~~~~s~Dg~~l~~~~~~~ 237 (726)
.. .+++. .|- .....++++|||++.++.+-.+
T Consensus 441 d~---~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 441 DK---KVVDW-NDLRDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred cC---eeEee-hhhhhhheeEEeccCCceEEEEEecc
Confidence 32 22321 121 2234678899999988876543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.12 E-value=5.1 Score=40.21 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=70.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc----c-ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----Q-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~----~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
-+..+++.|.|.+|+...+. ..++++|++|-+...-. . .+.+..+.+|+.|+ ||.+...+ ..|.+
T Consensus 218 ~vrsiSfHPsGefllvgTdH-----p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkD----G~Ikl 287 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDH-----PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKD----GAIKL 287 (430)
T ss_pred eeeeEeecCCCceEEEecCC-----CceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccC----CcEEe
Confidence 45667899999999987654 35899999886543211 1 34567788999885 77775432 24555
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+|=-++.--..+-...+..-..+..+++|||||+ .++-.+-++++.+.+
T Consensus 288 wDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL---sSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 288 WDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL---SSGKDSTVKLWEIST 336 (430)
T ss_pred eccccHHHHHHHHhhcCCceeeeEEEccCCeEEe---ecCCcceeeeeeecC
Confidence 5532222101111122333446778999999986 333445677777766
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.47 Score=48.93 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=66.7
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHH--CCcEEEEEccCCCCC-CCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLD--RGWVVAFADVRGGGG-GGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~d~RG~g~-~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
-+++++||- .......-...+|-..+ .-.+.+.+-++-.|. .|..+ .+..-..+..++...+++|.+..-.
T Consensus 117 ~vlvFvHGf-Nntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~----DreS~~~Sr~aLe~~lr~La~~~~~- 190 (377)
T COG4782 117 TVLVFVHGF-NNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNY----DRESTNYSRPALERLLRYLATDKPV- 190 (377)
T ss_pred eEEEEEccc-CCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeeccc----chhhhhhhHHHHHHHHHHHHhCCCC-
Confidence 488999973 32222211222333333 334555566664442 11111 1111224678888899999877543
Q ss_pred CCcEEEEEecccHHHHHHHHHc--------CCCceeEEEEeCCccccc
Q 004866 572 EHKLAGWGYSAGGLLVAAAINC--------CPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~--------~p~~f~a~v~~~p~~d~~ 611 (726)
.+|.|+.||||.++++.++-+ .+..|+-+|+.+|=+|.-
T Consensus 191 -~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D 237 (377)
T COG4782 191 -KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD 237 (377)
T ss_pred -ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence 799999999999999887654 234578888888877653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.07 E-value=8.4 Score=39.82 Aligned_cols=113 Identities=9% Similarity=0.048 Sum_probs=63.8
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc----c-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----Q-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~----~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
++.||| +.+..-..|+=...|+++...+|...... . ...+..+.|||..+.++.+..-+ ..|.+.|+
T Consensus 216 ~LdWSp----~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D----gsIrIWDi 287 (440)
T KOG0302|consen 216 GLDWSP----IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD----GSIRIWDI 287 (440)
T ss_pred eeeccc----ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC----ceEEEEEe
Confidence 457898 23332233544567999999988654322 1 23567799999999999876432 25667777
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+++....++........--++|+.+-..|+. - +....+.++||..
T Consensus 288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLas-G--~DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLAS-G--GDDGTLSIWDLRQ 333 (440)
T ss_pred cCCCccceeEeeccCCceeeEEccCCcceeee-c--CCCceEEEEEhhh
Confidence 77653323332221211112677766553332 2 2233466667654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=2.2 Score=45.70 Aligned_cols=148 Identities=9% Similarity=0.026 Sum_probs=86.6
Q ss_pred eEEeece--eeCCCCCEEEEEEeCCC---Cc---EEEEEEEECCCCceeccc--cccccceeEEecCCCEEEEEEecCCC
Q 004866 121 YAYEELS--EVSPDHKFLAYTMYDKD---ND---YFTLSVRNLNSGALCSKP--QAVRVSNIAWAKDGQALIYVVTDQNK 190 (726)
Q Consensus 121 ~~~~~~~--~~SPDG~~la~~~~~~g---~e---~~~l~v~dl~tg~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~ 190 (726)
++.++++ .|.+.|++|.+.+.+.- .. .++||+.++... -.++. ..+.+.++.|.|+++.+....- -
T Consensus 220 lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g---~ 295 (561)
T COG5354 220 LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISG---Y 295 (561)
T ss_pred eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEec---c
Confidence 4445543 69999999998765432 11 257999999743 33322 2556789999999999988751 1
Q ss_pred CCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec--cCCceEEee
Q 004866 191 RPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE--CEGLAHCIV 268 (726)
Q Consensus 191 ~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~~~~~ 268 (726)
.+..+-.+++.+. +++--+...-. .+.+||.++||++..-......+-++|..+ ..+.+.. ...-..+.|
T Consensus 296 ~pa~~s~~~lr~N----l~~~~Pe~~rN-T~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~~~~n~s~~~w 367 (561)
T COG5354 296 MPASVSVFDLRGN----LRFYFPEQKRN-TIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAFNGLNTSYCDW 367 (561)
T ss_pred cccceeecccccc----eEEecCCcccc-cccccCcccEEEEecCCccccceEEeccCC---ceEEEEEeecCCceEeec
Confidence 2345666666542 23222211110 245799999999877665555555666654 3333322 112223457
Q ss_pred eecCCEEEEEec
Q 004866 269 EHHEGFLYLFTD 280 (726)
Q Consensus 269 ~~~g~~l~~~t~ 280 (726)
++|+..++.-+.
T Consensus 368 spd~qF~~~~~t 379 (561)
T COG5354 368 SPDGQFYDTDTT 379 (561)
T ss_pred cCCceEEEecCC
Confidence 777775554443
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.5 Score=60.02 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=65.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.++++||+.+.. ..|......| ..++.|+.++.+|.+.. .....+++++.+.+...+..-. ...+
T Consensus 1069 ~~l~~lh~~~g~~--~~~~~l~~~l-~~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~~p 1134 (1296)
T PRK10252 1069 PTLFCFHPASGFA--WQFSVLSRYL-DPQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PHGP 1134 (1296)
T ss_pred CCeEEecCCCCch--HHHHHHHHhc-CCCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CCCC
Confidence 5688889876643 3455555555 45799999999988632 0112466666665544443311 1257
Q ss_pred EEEEEecccHHHHHHHHHc---CCCceeEEEEeCC
Q 004866 575 LAGWGYSAGGLLVAAAINC---CPDLFRAVVLEVP 606 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~~p 606 (726)
..++|+|+||.++..++.+ .++....+++..+
T Consensus 1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 9999999999999998875 4777777776554
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.24 Score=48.75 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.6
Q ss_pred CcEEEEEecccHHHHHHHHH
Q 004866 573 HKLAGWGYSAGGLLVAAAIN 592 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~ 592 (726)
.+|.++|||+||.++-.++.
T Consensus 78 ~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALG 97 (217)
T ss_pred ccceEEEecccHHHHHHHHH
Confidence 58999999999999877765
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.56 E-value=15 Score=39.11 Aligned_cols=113 Identities=11% Similarity=0.076 Sum_probs=66.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..+.|+-||..||+.. .+| .+.+|+..++....+.. .+.+..+.|..+|.+|+-...|. .+.++|.-
T Consensus 237 dVT~L~Wn~~G~~LatG~-~~G----~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~-----ttilwd~~ 306 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGS-EDG----EARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTILWDAH 306 (524)
T ss_pred CcceEEecCCCCeEEEee-cCc----EEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCc-----cEEEEecc
Confidence 467789999999999985 445 48899987765444433 55678899999999887654332 45666765
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
++.. ...|+....+ -+++.|-.+.++. ++.....-.||.++.+.
T Consensus 307 ~g~~-~q~f~~~s~~-~lDVdW~~~~~F~--ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 307 TGTV-KQQFEFHSAP-ALDVDWQSNDEFA--TSSTDGCIHVCKVGEDR 350 (524)
T ss_pred CceE-EEeeeeccCC-ccceEEecCceEe--ecCCCceEEEEEecCCC
Confidence 5531 1222222111 1345565444432 22222223455555544
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.5 Score=47.68 Aligned_cols=140 Identities=17% Similarity=0.070 Sum_probs=81.4
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHH----------------HHHHHCCcEEEEEccC
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSEL----------------KSLLDRGWVVAFADVR 532 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~----------------~~l~~~G~~v~~~d~R 532 (726)
.+....|..+..|++-... .....|+||++-||||-+.-.+...+. -.|-+ =-.++..|-+
T Consensus 50 ~v~~~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk-~aNiLfLd~P 126 (454)
T KOG1282|consen 50 TVNESEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNK-EANILFLDQP 126 (454)
T ss_pred ECCCCCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccc-cccEEEEecC
Confidence 3444568889888876653 224569999999999854211211110 01111 1346777777
Q ss_pred CCCCCCCcccccccccCCCCcHHHHHH-HHHHHHHcCCCCCCcEEEEEecccHHHHHHHH----HcC-----CC-ceeEE
Q 004866 533 GGGGGGKKWHHDGRRTKKLNSIKDFIS-CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAI----NCC-----PD-LFRAV 601 (726)
Q Consensus 533 G~g~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~----~~~-----p~-~f~a~ 601 (726)
-+.||.-.=........-....+|... ..+|+.+.+.--.....|.|-||+|..+-++| ... |. -+|+.
T Consensus 127 vGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~ 206 (454)
T KOG1282|consen 127 VGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGY 206 (454)
T ss_pred CcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEE
Confidence 655543221111111112233455544 45677777766678999999999996554444 322 21 37899
Q ss_pred EEeCCccccc
Q 004866 602 VLEVPFLDAT 611 (726)
Q Consensus 602 v~~~p~~d~~ 611 (726)
+...|++|..
T Consensus 207 ~IGNg~td~~ 216 (454)
T KOG1282|consen 207 AIGNGLTDPE 216 (454)
T ss_pred EecCcccCcc
Confidence 9999988754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.67 Score=50.48 Aligned_cols=62 Identities=27% Similarity=0.233 Sum_probs=45.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee-cccc---ccccceeEEecCCCEEEEEEecCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC-SKPQ---AVRVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~-~~~~---~~~~~~~~WspDg~~l~y~~~~~~ 189 (726)
++-+++|||||+++|-+. .+| .|+|++..+++.. .... ..+-..+.|.=||+.|+.+.++..
T Consensus 722 qIf~~AWSpdGr~~AtVc-KDg----~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVC-KDG----TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred ceeEEEECCCCcceeeee-cCc----eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 566789999999999875 455 4999999988632 2211 224456899999999999877653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.1 Score=49.74 Aligned_cols=114 Identities=9% Similarity=0.078 Sum_probs=66.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEE--EE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY--CS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~--~~ 198 (726)
.+..++|||||+++|-... |. ...+.||+++....+.... .-++..++|+|-+++|.-...... .--.+| +.
T Consensus 80 ~~t~vAfS~~GryvatGEc--G~-~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHD-MIVnv~dWr~ 155 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGEC--GR-TPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHD-MIVNVNDWRV 155 (1080)
T ss_pred ceeEEEEcCCCcEEEeccc--CC-CccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccc-eEEEhhhhhh
Confidence 4667789999999988742 22 3568999999876554333 335678999999998864422111 001122 32
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
++..... .+ ......+++|.||.|.+-..+++ -.+|.++...
T Consensus 156 N~~~asn--ki-----ss~Vsav~fsEdgSYfvT~gnrH--vk~wyl~~~~ 197 (1080)
T KOG1408|consen 156 NSSGASN--KI-----SSVVSAVAFSEDGSYFVTSGNRH--VKLWYLQIQS 197 (1080)
T ss_pred ccccccc--cc-----ceeEEEEEEccCCceeeeeeeee--EEEEEeeccc
Confidence 3211110 01 11123467899999876554432 4567666654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=92.05 E-value=11 Score=46.46 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=65.4
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----------------ccccceeEEecCCCEEEEEEecCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----------------AVRVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----------------~~~~~~~~WspDg~~l~y~~~~~~ 189 (726)
++.++|++..| |+.+..+ ..|+++|+.+|....... .....+++++|||+.||++...
T Consensus 687 gVa~dp~~g~L-yVad~~~---~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 687 DVCFEPVNEKV-YIAMAGQ---HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred EEEEecCCCeE-EEEECCC---CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 35789977765 4445433 358999998775432110 0123458899999999887432
Q ss_pred CCCceEEEEEcCCCCceeEEeee------------cCC-------ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 190 KRPYQIYCSIIGSTDEDALLLEE------------SNE-------NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 190 ~~~~~l~~~~l~t~~~~~lv~~~------------~d~-------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.++|+++++.++....+.... .+. ....++.+++||+ |++... ....|.++|.++
T Consensus 761 --n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs--~N~rIrviD~~t 834 (1057)
T PLN02919 761 --SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS--YNHKIKKLDPAT 834 (1057)
T ss_pred --CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC--CCCEEEEEECCC
Confidence 357888888765421111000 000 0113567889997 444432 245688888876
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.6 Score=43.74 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=43.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQ 188 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~ 188 (726)
.+..++||.|+..|.-.+ -..++++--+.+|+.+.... ...+....|++||..|.-.+.|.
T Consensus 308 Gvt~l~FSrD~SqiLS~s-----fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 308 GVTCLSFSRDNSQILSAS-----FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred CeeEEEEccCcchhhccc-----ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 355678999999885432 23578999999998776533 22456678999999987765553
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=91.61 E-value=33 Score=41.58 Aligned_cols=148 Identities=12% Similarity=0.081 Sum_probs=82.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEE----ECCCCceecccc-ccccceeEEecCCCEEEEEEecCCC----CCc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVR----NLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNK----RPY 193 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~----dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~----~~~ 193 (726)
.+-++.+-+|...|.++. .+| +|.+. +..+.+.-.+.. ..++..++||||+..|+++.....- +..
T Consensus 77 ~ivs~~yl~d~~~l~~~~-~~G----di~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIAL-ASG----DIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred cEEEEEeccCCCcEEEEE-CCc----eEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 456677888998887775 455 36677 555554333333 5578889999999999888643210 000
Q ss_pred e-EE-------------EEEcCCCCceeE------------------------EeeecCCceEEEEEEcCCCcEEEEEEc
Q 004866 194 Q-IY-------------CSIIGSTDEDAL------------------------LLEESNENVYVNIRHTKDFHFVCVHTF 235 (726)
Q Consensus 194 ~-l~-------------~~~l~t~~~~~l------------------------v~~~~d~~~~~~~~~s~Dg~~l~~~~~ 235 (726)
+ |. -+.+|=|++++. ... .|+ .-+.++|-.||+|+++++-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd-~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDD-GRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCC-CceEEEECCCCcEEEEEEE
Confidence 0 10 111221110000 000 111 2357899999999999886
Q ss_pred C--CC-ceEEEEEeCCCCCCCeEEeeccCCceE--EeeeecCCEEEEEec
Q 004866 236 S--TT-SSKVFLINAADPFSGLTLIWECEGLAH--CIVEHHEGFLYLFTD 280 (726)
Q Consensus 236 ~--~~-~~~l~~~d~~~~~~~~~~l~~~~~~~~--~~~~~~g~~l~~~t~ 280 (726)
. .+ ...+.+++-++ .+.-.....++.+ ..|.|.|..++-...
T Consensus 230 ~~~~~~~R~iRVy~ReG---~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 230 EPETGSRRVIRVYSREG---ELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred EcCCCceeEEEEECCCc---eEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 2 23 35677776653 4444444444443 245577775554443
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.4 Score=51.02 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=56.9
Q ss_pred CEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEE-EEcCC--CceEEEEEeCCCCCCCeE
Q 004866 179 QALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCV-HTFST--TSSKVFLINAADPFSGLT 255 (726)
Q Consensus 179 ~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~-~~~~~--~~~~l~~~d~~~~~~~~~ 255 (726)
..|+|... .+ .+|.+.|.......++-.+.... ...+.|||||++|++ ++-++ +.+.||+.+|.+....+.
T Consensus 319 tkiAfv~~-~~---~~L~~~D~dG~n~~~ve~~~~~~--i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~v 392 (912)
T TIGR02171 319 AKLAFRND-VT---GNLAYIDYTKGASRAVEIEDTIS--VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLV 392 (912)
T ss_pred eeEEEEEc-CC---CeEEEEecCCCCceEEEecCCCc--eecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCce
Confidence 45777642 11 27888888765443331332222 246899999999999 55555 578899999988554443
Q ss_pred EeeccCC-ceEEeeeecCCE-EEEEecCc
Q 004866 256 LIWECEG-LAHCIVEHHEGF-LYLFTDAA 282 (726)
Q Consensus 256 ~l~~~~~-~~~~~~~~~g~~-l~~~t~~~ 282 (726)
.|.-... -...-+-..|++ +.++++.+
T Consensus 393 kl~ve~aaiprwrv~e~gdt~ivyv~~a~ 421 (912)
T TIGR02171 393 KLPVENAAIPRWRVLENGDTVIVYVSDAS 421 (912)
T ss_pred EeecccccccceEecCCCCeEEEEEcCCC
Confidence 3321111 112233345554 66666644
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.50 E-value=22 Score=37.92 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=39.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 184 (726)
+..+.-||+|.+|+-+. ..| +||+|.+.||+.+.... -..+.-+.|+.||+.|+-.
T Consensus 84 v~al~s~n~G~~l~ag~-i~g----~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT-ISG----NLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred eeeeecCCCceEEEeec-ccC----cEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEec
Confidence 45567799999987652 334 49999999998775432 2245668899999877544
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.28 Score=52.89 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=53.2
Q ss_pred cchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHH
Q 004866 511 RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAA 590 (726)
Q Consensus 511 ~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~ 590 (726)
.|...++.|.+.||..- .+++|. +-.|+.+.. .....+..+...++.+.+.. ..+|.|+||||||.++...
T Consensus 66 ~~~~li~~L~~~GY~~~-~~l~~~---pYDWR~~~~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~f 136 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRG-KDLFAA---PYDWRLSPA--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYF 136 (389)
T ss_pred hHHHHHHHHHhcCcccC-CEEEEE---eechhhchh--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHH
Confidence 47888899999887531 111211 112332221 11123455555555554432 5899999999999999998
Q ss_pred HHcCCC------ceeEEEEeCCc
Q 004866 591 INCCPD------LFRAVVLEVPF 607 (726)
Q Consensus 591 ~~~~p~------~f~a~v~~~p~ 607 (726)
+...+. .+++.|+.++.
T Consensus 137 l~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 137 LQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred HHhccchhhHHhhhhEEEEeCCC
Confidence 887643 36777776653
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.57 Score=39.83 Aligned_cols=43 Identities=14% Similarity=-0.026 Sum_probs=34.9
Q ss_pred CCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC
Q 004866 655 LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE 704 (726)
Q Consensus 655 ~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 704 (726)
..|+|++.+..|+.+|+..+.++.++|... +.+. ..+.||+..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s------~lvt-~~g~gHg~~ 76 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGS------RLVT-VDGAGHGVY 76 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCc------eEEE-EeccCccee
Confidence 578999999999999999999999998763 2232 688899854
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.7 Score=48.98 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=70.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc----------cccccceeEEecCC-CEEEEEEecCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP----------QAVRVSNIAWAKDG-QALIYVVTDQNKR 191 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~----------~~~~~~~~~WspDg-~~l~y~~~~~~~~ 191 (726)
-+.++.++|||+...... ..| ..++++..+-+..... ...++.++.+.|-. ..++++..|.
T Consensus 453 lITAvcy~PdGk~avIGt-~~G----~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS--- 524 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGT-FNG----YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS--- 524 (712)
T ss_pred hheeEEeccCCceEEEEE-ecc----EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC---
Confidence 467788999999987775 556 3777777665543211 11257888888643 3588886553
Q ss_pred CceEEEEEcCCCCceeEEeee-cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 192 PYQIYCSIIGSTDEDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~~~-~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+|.++|+.+.. -+..|.. .+..--...+++.||++|+..+ .++.||+++.+.
T Consensus 525 --rIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s---eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 525 --RIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSAS---EDSWVYIWKNDS 577 (712)
T ss_pred --ceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEee---cCceEEEEeCCC
Confidence 68888874332 1111211 1111124567899999998777 346788888765
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.13 E-value=24 Score=37.62 Aligned_cols=60 Identities=20% Similarity=0.091 Sum_probs=39.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEec
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTD 187 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~ 187 (726)
.+-.+++||||++||.+- . ...|.|||..|.+.+.... .+.+.+++|-..-..+|-...|
T Consensus 204 eil~~avS~Dgkylatgg----~-d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG----R-DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred eeEEEEEcCCCcEEEecC----C-CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC
Confidence 455678999999998862 1 2357899999999887632 4456666665444445544444
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=6.1 Score=39.45 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=64.9
Q ss_pred ccccceeEEecCC-CEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCc--eEE
Q 004866 166 AVRVSNIAWAKDG-QALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTS--SKV 242 (726)
Q Consensus 166 ~~~~~~~~WspDg-~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~--~~l 242 (726)
..+..+++++|-. +.++|.+... ...+..|..+.++.+++....+-.||-.-.+|+||++|+-+.+.-.. ..|
T Consensus 67 paR~Hgi~~~p~~~ravafARrPG----tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPG----TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCC----ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceE
Confidence 3455678888865 4566765332 24566777776655555555555677667799999999988776543 456
Q ss_pred EEEeCCCCCCCeEEeecc----CCceEEeeeecCCEEEEEecC
Q 004866 243 FLINAADPFSGLTLIWEC----EGLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 243 ~~~d~~~~~~~~~~l~~~----~~~~~~~~~~~g~~l~~~t~~ 281 (726)
=++|...+ ...+-+- -+..+..+.+||..+.+ .|.
T Consensus 143 GvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvv-anG 181 (366)
T COG3490 143 GVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVV-ANG 181 (366)
T ss_pred EEEecccc---cceecccccCCcCcceeEEecCCcEEEE-eCC
Confidence 66676542 2222221 12345566677776655 453
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.03 E-value=13 Score=37.74 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=55.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-----C--ceecc--------ccccccceeEEe-------cCCCEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-----G--ALCSK--------PQAVRVSNIAWA-------KDGQAL 181 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-----g--~~~~~--------~~~~~~~~~~Ws-------pDg~~l 181 (726)
+.+.+|||||.-|...+...+ |.++++-. + ..+.. ...+.+....|= |+...+
T Consensus 52 ~kgckWSPDGSciL~~sedn~-----l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNC-----LNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCe-----eeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 345689999999877654332 56665421 1 11110 011233445563 343333
Q ss_pred EEEEecCCCCCceEEEEEcCCCCceeEEeee---cCC-ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 182 IYVVTDQNKRPYQIYCSIIGSTDEDALLLEE---SNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 182 ~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~---~d~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+.++ +..-|.++|.-+++. +.-|.. .|. .-..++.+||||.+|+..-+ +-|.+.|+..+
T Consensus 127 a~ss-----r~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----rcirvFdt~Rp 189 (406)
T KOG2919|consen 127 AVSS-----RDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----RCIRVFDTSRP 189 (406)
T ss_pred eecc-----ccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeeccc----ceEEEeeccCC
Confidence 3332 222466667666541 112211 111 01136789999999975333 34777777544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.7 Score=46.64 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=35.2
Q ss_pred ccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceE---EEEEEcCCCcEEEE
Q 004866 168 RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVY---VNIRHTKDFHFVCV 232 (726)
Q Consensus 168 ~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~---~~~~~s~Dg~~l~~ 232 (726)
.+..++|||||+.|+.+..|. -|.+.+..+.. |+ . .-..|| +=+.||||||||+.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~e---Ll-g-~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQE---LL-G-VMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEecCc-----eEEEeeccHHH---HH-H-HHHhhccceEEEEEcCCccEEEe
Confidence 456789999999999986543 35555554432 11 0 112244 34789999999974
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.5 Score=45.45 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=63.9
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC--------C-----Cceeccc--c---ccccceeEEecCCCEEE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN--------S-----GALCSKP--Q---AVRVSNIAWAKDGQALI 182 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~--------t-----g~~~~~~--~---~~~~~~~~WspDg~~l~ 182 (726)
...+..++|||+|..||-..| |+ .+++|-.. + .+...+. . ...+..++|+||+..+.
T Consensus 65 ~~aVN~vRf~p~gelLASg~D--~g---~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGD--GG---EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cceeEEEEEcCCcCeeeecCC--Cc---eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 347888999999999987643 22 34555443 3 1111100 0 13456789999999888
Q ss_pred EEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEc
Q 004866 183 YVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTF 235 (726)
Q Consensus 183 y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~ 235 (726)
..+.+ +.++.+|+..++..... ..+..+.-+++|.|-++|+.-.+.
T Consensus 140 s~s~d-----ns~~l~Dv~~G~l~~~~--~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 140 SGSVD-----NSVRLWDVHAGQLLAIL--DDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred eeecc-----ceEEEEEeccceeEeec--cccccccceeecchhhhhhhhhcc
Confidence 87654 36788888877633222 123334456889999998865443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.52 E-value=5.2 Score=41.32 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=73.0
Q ss_pred EEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 122 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 122 ~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
..++++.|++ .-++|+..- ..+|.+||+++|....... ......+..+|..+.|+-...++ .+.+||-
T Consensus 261 ~~Vs~V~w~d--~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr-----~irl~DP 329 (423)
T KOG0313|consen 261 EPVSSVVWSD--ATVIYSVSW----DHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR-----HIRLWDP 329 (423)
T ss_pred cceeeEEEcC--CCceEeecc----cceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC-----ceeecCC
Confidence 3678889998 557787643 3579999999997654322 33456788899887666554332 4667776
Q ss_pred CCCCceeEEeeecC-CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLLEESN-ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~~d-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.++....+.+.-.. ..+...+.|+|-..+++++...+....+| |+.+
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW--DvRS 377 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW--DVRS 377 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE--Eecc
Confidence 65542222222111 22445689999999999887766555544 5554
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.54 Score=42.38 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
.+.+...++.+.++.- +.+|.+.|||+||.++..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 4455566666665533 4899999999999998877654
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=90.26 E-value=6.2 Score=44.38 Aligned_cols=110 Identities=14% Similarity=0.024 Sum_probs=61.5
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD- 204 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~- 204 (726)
...+||||+++..+.. +.....++..++..+........... .-++.+||+..++. .+.|-.+|..+..
T Consensus 239 ~v~~spdGk~afvTsy-NsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V~-------gn~V~VID~~t~~~ 308 (635)
T PRK02888 239 NVDTDYDGKYAFSTCY-NSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTIG-------GSKVPVVDGRKAAN 308 (635)
T ss_pred cceECCCCCEEEEecc-CcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEEC-------CCEEEEEECCcccc
Confidence 4579999999876641 11112356677664433222111111 12567899977652 2468888876610
Q ss_pred -ceeEEee--ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 205 -EDALLLE--ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 205 -~~~lv~~--~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
...++.. .+..+ -++.+||||++++++. ..++.+-++|+++
T Consensus 309 ~~~~v~~yIPVGKsP--HGV~vSPDGkylyVan--klS~tVSVIDv~k 352 (635)
T PRK02888 309 AGSALTRYVPVPKNP--HGVNTSPDGKYFIANG--KLSPTVTVIDVRK 352 (635)
T ss_pred CCcceEEEEECCCCc--cceEECCCCCEEEEeC--CCCCcEEEEEChh
Confidence 0112221 22223 2577899999998654 3345677788765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=90.05 E-value=15 Score=36.24 Aligned_cols=188 Identities=12% Similarity=0.046 Sum_probs=89.7
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCcee
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA 207 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~ 207 (726)
..+++++|... +..+ .|+.+|..+|+.+-... ........ ..++..+|+... ...|+.+++.+++..-
T Consensus 32 ~~~~~~~v~~~-~~~~----~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~-----~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 32 AVPDGGRVYVA-SGDG----NLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTS-----DGSLYALDAKTGKVLW 100 (238)
T ss_dssp EEEETTEEEEE-ETTS----EEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEET-----TSEEEEEETTTSCEEE
T ss_pred EEEeCCEEEEE-cCCC----EEEEEECCCCCEEEEeecccccccee-eecccccccccc-----eeeeEecccCCcceee
Confidence 34567766554 4333 59999999998653222 22222222 344556766541 1278999987775211
Q ss_pred EEeeec--CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCce--------EEeeeecCCEEE
Q 004866 208 LLLEES--NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGLA--------HCIVEHHEGFLY 276 (726)
Q Consensus 208 lv~~~~--d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~--------~~~~~~~g~~l~ 276 (726)
...... ............++..+++... ...|+.+|++++...++.-... .... ...+.-.++.+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred eeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 111111 1111122222334777766654 3468888887743212111111 1111 111112344666
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE-EeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED-VDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~-~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
+.+... .++.+++. .. ...|+.. .. .+.. ....++.|++.. .+ ..|+.+|+.++
T Consensus 178 ~~~~~g---------~~~~~d~~-tg-~~~w~~~-~~----~~~~~~~~~~~~l~~~~-~~--~~l~~~d~~tG 232 (238)
T PF13360_consen 178 VSSGDG---------RVVAVDLA-TG-EKLWSKP-IS----GIYSLPSVDGGTLYVTS-SD--GRLYALDLKTG 232 (238)
T ss_dssp EECCTS---------SEEEEETT-TT-EEEEEEC-SS-----ECECEECCCTEEEEEE-TT--TEEEEEETTTT
T ss_pred EEcCCC---------eEEEEECC-CC-CEEEEec-CC----CccCCceeeCCEEEEEe-CC--CEEEEEECCCC
Confidence 554332 15556765 32 2236322 11 1223 445567777666 43 46778887764
|
... |
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.2 Score=46.97 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=58.7
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcE---EEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDRGWV---VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
.++++||. +.. ...|......+...||. +..+++.+...-+.. ....+-+.+-++....+ ...
T Consensus 61 pivlVhG~-~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~ql~~~V~~~l~~--~ga 126 (336)
T COG1075 61 PIVLVHGL-GGG-YGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSL----------AVRGEQLFAYVDEVLAK--TGA 126 (336)
T ss_pred eEEEEccC-cCC-cchhhhhhhhhcchHHHhcccccccccccCCCccc----------cccHHHHHHHHHHHHhh--cCC
Confidence 46778886 221 23355555556666777 777777755211100 01222223333333322 233
Q ss_pred CcEEEEEecccHHHHHHHHHcCC--CceeEEEEeCCc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCP--DLFRAVVLEVPF 607 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p--~~f~a~v~~~p~ 607 (726)
.++.+.|||+||.++..++...+ .+++.++...+.
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 89999999999999999888887 778888876653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.68 E-value=5.8 Score=41.41 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=60.1
Q ss_pred EEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecC---CceEEEEEEc
Q 004866 149 TLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESN---ENVYVNIRHT 224 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d---~~~~~~~~~s 224 (726)
.|++||..++..+.... .+.+.++.-++||..|.-...| ..+-.+|+.+.+. +.+|.... ...+..+.+|
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD-----dtl~viDlRt~eI-~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD-----DTLKVIDLRTKEI-RQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC-----CceeeeecccccE-EEEeeccccccccccceeEEC
Confidence 48888887776665433 5578889999999888766333 2466677766532 23333211 1112356789
Q ss_pred CCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 225 KDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 225 ~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
||+.|++-.+. ...||++++.++
T Consensus 397 pd~~YvaAGS~---dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSA---DGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccC---CCcEEEEEccCc
Confidence 99999975444 346899998874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.64 E-value=19 Score=36.38 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=62.8
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCC------------Ccee---cc--cc---ccccceeEEecCCCEEEEEEe
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS------------GALC---SK--PQ---AVRVSNIAWAKDGQALIYVVT 186 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t------------g~~~---~~--~~---~~~~~~~~WspDg~~l~y~~~ 186 (726)
.++||||..+|-.+ -...|.++|++- |+.. ++ +. .+.+..+.|.|-.. |+.+..
T Consensus 118 aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-ILiS~s 191 (430)
T KOG0640|consen 118 AAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-ILISGS 191 (430)
T ss_pred eeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-eEEecc
Confidence 46999999987653 234589999861 1110 11 11 23456678888765 444432
Q ss_pred cCCCCCceEEEEEcCCCC--ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 187 DQNKRPYQIYCSIIGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 187 ~~~~~~~~l~~~~l~t~~--~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+..-|.+.|+.... ..-.++.+..+ ...+++.|.|.+|++.... .-+.++|+.+
T Consensus 192 ----rD~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTdH---p~~rlYdv~T 247 (430)
T KOG0640|consen 192 ----RDNTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTDH---PTLRLYDVNT 247 (430)
T ss_pred ----CCCeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecCC---CceeEEeccc
Confidence 33457777775442 11223433322 2357889999999876653 3466777765
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=32 Score=38.97 Aligned_cols=161 Identities=9% Similarity=-0.061 Sum_probs=85.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEc-C
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII-G 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l-~ 201 (726)
.+..+.+|+||+.+|+.. ++ ...|++.... +....+........+.|.++| +++-. .+ ..+..|.+..- +
T Consensus 344 ~~~s~avS~~g~~~A~~~---~~-~~~l~~~~~g-~~~~~~~~g~~Lt~PS~d~~g-~vWtv-~~--g~~~~vv~~~~~g 414 (573)
T PRK13614 344 GPASPAESPVSQTVAFLN---GS-RTTLYTVSPG-QPARALTSGSTLTRPSFSPQD-WVWTA-GP--GGNGRIVAYRPTG 414 (573)
T ss_pred cccceeecCCCceEEEec---CC-CcEEEEecCC-CcceeeecCCCccCCcccCCC-CEEEe-eC--CCCceEEEEecCC
Confidence 355678999999999973 22 2467776653 333322223346778899888 56533 22 22235555442 2
Q ss_pred CCC---ce--eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC-CCCCeEEeeccC------CceEEeee
Q 004866 202 STD---ED--ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD-PFSGLTLIWECE------GLAHCIVE 269 (726)
Q Consensus 202 t~~---~~--~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~-~~~~~~~l~~~~------~~~~~~~~ 269 (726)
++. .. .+.....+..-...+..|+||-.+++.....+...|++.-+.. ..+.++.|.... ......|
T Consensus 415 ~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W- 493 (573)
T PRK13614 415 VAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAW- 493 (573)
T ss_pred CcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEE-
Confidence 211 11 1111111222245688999999998877655555666643321 123444443321 1112223
Q ss_pred ecCCEEEEEecCcccCCCCCCeEEEEeeC
Q 004866 270 HHEGFLYLFTDAAKEGQEADNHYLLRCPV 298 (726)
Q Consensus 270 ~~g~~l~~~t~~~~~~~~~~~~~l~~~~~ 298 (726)
-+++.|++++...++ +..++.+.+
T Consensus 494 ~~~~sl~V~~~~~~~-----~~~~~~v~v 517 (573)
T PRK13614 494 VGDSTVVVTKASATS-----NVVPELLSV 517 (573)
T ss_pred cCCCEEEEEeccCCC-----cceEEEEEe
Confidence 456778888764432 344555555
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.62 E-value=5.1 Score=45.18 Aligned_cols=129 Identities=10% Similarity=0.060 Sum_probs=78.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec--ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS--KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~--~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
++.+++|||--...-++...+| .|.+||+.--.... ++. .+-+.-+.|+|++.+|+-. +|..+|.+++
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG----~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG-----GRDK~vkiWd 248 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSG----YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG-----GRDKMVKIWD 248 (839)
T ss_pred hhhceeeccCCCceEEEecCCc----eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec-----CCCccEEEEe
Confidence 4566788885444434444445 48899987543322 222 3345667899988777654 2445677778
Q ss_pred cCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC
Q 004866 200 IGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG 262 (726)
Q Consensus 200 l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 262 (726)
.+++. ....+.+... + ..-+.|-|+..+.+-++.......|+++|+..+--+...+....+
T Consensus 249 ~t~~~~~~~~tInTia-p-v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIA-P-VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred ccCCCccceeEEeecc-e-eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 77655 3333332211 1 234789999998887777777788999999765433333433333
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.54 E-value=30 Score=36.26 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=73.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce-ecccc--------ccccceeEEecCCCEEEEEEecCCCCCc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-CSKPQ--------AVRVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~-~~~~~--------~~~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
.+-+..|+|=...+.- .|+|...|.||.+-.+-. ..++. ..+++-+.|.|--.-++.+. ...+
T Consensus 83 ~vLDi~w~PfnD~vIA----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa----g~Dn 154 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIA----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA----GSDN 154 (472)
T ss_pred cccccccCccCCceee----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc----cCCc
Confidence 3445679997776533 366778899998754422 22221 12567889999877777664 3345
Q ss_pred eEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 194 QIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 194 ~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.|.+++++++.. .+... .+....++.|+-||..|+-++.+ ..|.++|..+
T Consensus 155 ~v~iWnv~tgea-li~l~--hpd~i~S~sfn~dGs~l~TtckD---KkvRv~dpr~ 204 (472)
T KOG0303|consen 155 TVSIWNVGTGEA-LITLD--HPDMVYSMSFNRDGSLLCTTCKD---KKVRVIDPRR 204 (472)
T ss_pred eEEEEeccCCce-eeecC--CCCeEEEEEeccCCceeeeeccc---ceeEEEcCCC
Confidence 899999999853 22222 22234578899999998765543 3678888766
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=89.41 E-value=4.4 Score=33.25 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=42.1
Q ss_pred eeEEecCCCEEEEEEecCC-------------CCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC
Q 004866 171 NIAWAKDGQALIYVVTDQN-------------KRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST 237 (726)
Q Consensus 171 ~~~WspDg~~l~y~~~~~~-------------~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~ 237 (726)
+++.++|+..|||+..... ....+|+++|..+++..+++ +. -.|--+++.|+|+++|++....
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~--L~fpNGVals~d~~~vlv~Et~- 77 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DG--LYFPNGVALSPDESFVLVAETG- 77 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EE--ESSEEEEEE-TTSSEEEEEEGG-
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hC--CCccCeEEEcCCCCEEEEEecc-
Confidence 3556677567888754322 12357999999987654444 22 2344578999999999887653
Q ss_pred CceEEEEEeCC
Q 004866 238 TSSKVFLINAA 248 (726)
Q Consensus 238 ~~~~l~~~d~~ 248 (726)
..+|..+-++
T Consensus 78 -~~Ri~rywl~ 87 (89)
T PF03088_consen 78 -RYRILRYWLK 87 (89)
T ss_dssp -GTEEEEEESS
T ss_pred -CceEEEEEEe
Confidence 2345554443
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=18 Score=41.21 Aligned_cols=165 Identities=14% Similarity=0.040 Sum_probs=85.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce-----eccccccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-----CSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~-----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.+..+++|+||+.+|+.. ..+ ..|++-.+..+.. ...........+.|.++| +++-. +......++.+
T Consensus 364 ~~~s~avS~~g~~~A~v~-~~~---~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv--d~~~~~~~vl~ 436 (599)
T PRK13613 364 PLRRVAVSRDESRAAGIS-ADG---DSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVV--DRDPADPRLLW 436 (599)
T ss_pred CccceEEcCCCceEEEEc-CCC---cEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEe--cCCCCCceEEE
Confidence 355678999999999984 222 4688877655543 112223356778898887 56543 22112223333
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC-CCC-----eEEeeccCCceEEeeeec
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP-FSG-----LTLIWECEGLAHCIVEHH 271 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~-~~~-----~~~l~~~~~~~~~~~~~~ 271 (726)
..-+++....+-....+..-...+..|+||-.+++.........|++.-+... .+. +..+...-.......+-+
T Consensus 437 v~~~~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~ 516 (599)
T PRK13613 437 LLQGDGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAG 516 (599)
T ss_pred EEcCCCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcC
Confidence 22233331111111112223456889999999988877655556665433221 122 222222222222222245
Q ss_pred CCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 272 EGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 272 g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
++.|+++....++ +..++.+.++
T Consensus 517 ~~sL~Vlg~~~~~-----~~~v~~v~vd 539 (599)
T PRK13613 517 DSQLVVLGREEGG-----VQQARYVQVD 539 (599)
T ss_pred CCEEEEEeccCCC-----CcceEEEecC
Confidence 6677776532221 3557777776
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.16 E-value=5.6 Score=39.81 Aligned_cols=113 Identities=9% Similarity=-0.012 Sum_probs=65.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec--ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS--KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~--~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+...+|+|||..+|-+ |. ..+|++|++.+-..-. +.. .+.+..+.|.+|++.|+-...|. .|+.+|
T Consensus 49 eI~~~~F~P~gs~~aSg----G~-Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk-----~v~~wD 118 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASG----GS-DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK-----TVRGWD 118 (338)
T ss_pred eEEEEEECCCCCeEeec----CC-cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc-----eEEEEe
Confidence 56667899999987643 33 3479999976543211 111 45678899999999887664432 688889
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+.+++..+- + ..+..+.-.+..+.=|-.++.+.... ..+.++|...
T Consensus 119 ~~tG~~~rk-~-k~h~~~vNs~~p~rrg~~lv~SgsdD--~t~kl~D~R~ 164 (338)
T KOG0265|consen 119 AETGKRIRK-H-KGHTSFVNSLDPSRRGPQLVCSGSDD--GTLKLWDIRK 164 (338)
T ss_pred cccceeeeh-h-ccccceeeecCccccCCeEEEecCCC--ceEEEEeecc
Confidence 888752211 1 11222322233344455555444433 3455556553
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=89.01 E-value=6.3 Score=41.96 Aligned_cols=115 Identities=8% Similarity=-0.036 Sum_probs=73.3
Q ss_pred EEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-Cceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 122 AYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 122 ~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-g~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
-.++.++|.|-.-+|..+...++ .|+||++-+ ++.++... ...+..+.|+++|+.|+-..+|. -|.++
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~----~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~-----~lKlw 285 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDG----LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR-----FLKLW 285 (503)
T ss_pred cccchhhhccceeeEEEecCCCc----eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce-----eeeee
Confidence 36788899995555555543333 589999877 55444322 33567899999999998877664 46667
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
|+.|++. ..-|+.....+. +.+.||+..+++.-.. ..+|..+|+.++
T Consensus 286 DtETG~~-~~~f~~~~~~~c--vkf~pd~~n~fl~G~s--d~ki~~wDiRs~ 332 (503)
T KOG0282|consen 286 DTETGQV-LSRFHLDKVPTC--VKFHPDNQNIFLVGGS--DKKIRQWDIRSG 332 (503)
T ss_pred ccccceE-EEEEecCCCcee--eecCCCCCcEEEEecC--CCcEEEEeccch
Confidence 8887752 122333322332 4678999666654432 356888888774
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.71 Score=47.75 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=63.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCC------ceE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRP------YQI 195 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~------~~l 195 (726)
+-.+.||||+..++..+- . ..++++|+..|....... ......++|.|-+++|.-...++..+. ..+
T Consensus 126 iydL~Ws~d~~~l~s~s~-d----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSV-D----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred hhhhhccCCCceeeeeec-c----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence 445689999999988642 1 348999999998765433 235578999999988876655542211 112
Q ss_pred EEEE-------cCCCC--ceeEEe-eecCCceEEEEEEcCCCcEEEE
Q 004866 196 YCSI-------IGSTD--EDALLL-EESNENVYVNIRHTKDFHFVCV 232 (726)
Q Consensus 196 ~~~~-------l~t~~--~~~lv~-~~~d~~~~~~~~~s~Dg~~l~~ 232 (726)
+++. .+... ...-+| .+.-..||-.++|||||..|+.
T Consensus 201 ~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 201 KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 2222 11111 111133 3333457777899999998764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.82 E-value=28 Score=35.10 Aligned_cols=74 Identities=20% Similarity=0.175 Sum_probs=47.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-Cceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-g~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
+++.++|||.-..++...+-+| ++++|++.. |....... .+.+-...|+.||..+|-...| .++-++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~----tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-----k~~k~w 99 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDG----TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-----KQAKLW 99 (347)
T ss_pred chheeEeccccCceEEecccCC----ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-----CceEEE
Confidence 6788899994444433333334 588998876 44443221 3345678999999776655433 367778
Q ss_pred EcCCCCc
Q 004866 199 IIGSTDE 205 (726)
Q Consensus 199 ~l~t~~~ 205 (726)
||.+++.
T Consensus 100 DL~S~Q~ 106 (347)
T KOG0647|consen 100 DLASGQV 106 (347)
T ss_pred EccCCCe
Confidence 9988863
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.59 Score=43.01 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=21.7
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCC
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPD 596 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~ 596 (726)
...+|.++|||+||.++..++.....
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 45799999999999999888776543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.45 E-value=6.3 Score=39.11 Aligned_cols=90 Identities=18% Similarity=0.112 Sum_probs=52.8
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHC-CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
.|+| ..||-...+...++....+.+-+. |..|...+.--+ -...|. .+-.+-+.-+++.+. +.-.-+
T Consensus 24 ~P~i-i~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~g--~~~s~l--------~pl~~Qv~~~ce~v~-~m~~ls 91 (296)
T KOG2541|consen 24 VPVI-VWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGDG--IKDSSL--------MPLWEQVDVACEKVK-QMPELS 91 (296)
T ss_pred CCEE-EEeccCcccccchHHHHHHHHHhCCCCeeEEEEecCC--cchhhh--------ccHHHHHHHHHHHHh-cchhcc
Confidence 4554 458744444444566667777774 888888886432 111111 122333333444444 433345
Q ss_pred CcEEEEEecccHHHHHHHHHcCC
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCP 595 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p 595 (726)
+-.-|+|.|.||.++=+++..-+
T Consensus 92 qGynivg~SQGglv~Raliq~cd 114 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCD 114 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCC
Confidence 77899999999988877775543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.11 E-value=24 Score=39.79 Aligned_cols=195 Identities=11% Similarity=0.010 Sum_probs=101.7
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecC---CC-EEEEEEecCCCCCceE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKD---GQ-ALIYVVTDQNKRPYQI 195 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspD---g~-~l~y~~~~~~~~~~~l 195 (726)
+-.+.++.+++|+.-+.++. ++ -.+.|||+.+-+.+.+.. .....+....++ ++ .++++... ...+
T Consensus 192 ~S~vtsL~~~~d~~~~ls~~-RD----kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~----~g~~ 262 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSVG-RD----KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG----SGVV 262 (775)
T ss_pred hhheeeeeeccCCceEEEec-cC----cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC----CceE
Confidence 34677889999999887763 22 258999996655443322 233444555554 33 24455432 2245
Q ss_pred EEEEcCCCCceeEEeeec-CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce--EEeeeecC
Q 004866 196 YCSIIGSTDEDALLLEES-NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA--HCIVEHHE 272 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~-d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--~~~~~~~g 272 (726)
...+..+++.. .....+ ++.+--......+++.+++++. .++.++|.++.. ..+.+....+.+ -.++.++.
T Consensus 263 ~~~d~es~~~~-~~~~~~~~~e~~~~~~~~~~~~~l~vtae----Qnl~l~d~~~l~-i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 263 QYWDSESGKCV-YKQRQSDSEEIDHLLAIESMSQLLLVTAE----QNLFLYDEDELT-IVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred EEEecccchhh-hhhccCCchhhhcceeccccCceEEEEcc----ceEEEEEccccE-EehhhcCCchhheeeeecCCcc
Confidence 55555444200 000001 1111111233455666665543 358888776521 011122111111 12455777
Q ss_pred CEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee-CCEEEEEEEeCCeeEEEEEe
Q 004866 273 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC-KTHMALILREGRTYRLCSVS 345 (726)
Q Consensus 273 ~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~~ 345 (726)
++|++.||.+. .+++.++-. . -.++++..+. +-+++.. .+.++++...+-.-.+++++
T Consensus 337 ~~laVATNs~~-------lr~y~~~~~------~-c~ii~GH~e~-vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 337 SHLAVATNSPE-------LRLYTLPTS------Y-CQIIPGHTEA-VLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred ceEEEEeCCCc-------eEEEecCCC------c-eEEEeCchhh-eeeeeecccCcEEEEecCCceEEEEEec
Confidence 89999999763 677733221 1 1266555444 4445533 44588888888888888884
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=43 Score=36.04 Aligned_cols=248 Identities=14% Similarity=0.028 Sum_probs=128.4
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc--cccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA--VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~--~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
....|+|..+.+... ..+ ++.+.+............ .......-+++++.+|....+ ...|..++..+..
T Consensus 36 v~~~~~g~~~~v~~~-~~~---~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~~ 107 (381)
T COG3391 36 VAVNPDGTQVYVANS-GSN---DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD----SNTVSVIDTATNT 107 (381)
T ss_pred eEEcCccCEEEEEee-cCc---eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC----CCeEEEEcCcccc
Confidence 468999988766543 222 567777653332221111 123467788888888776433 2367777755433
Q ss_pred ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCccc
Q 004866 205 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKE 284 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~ 284 (726)
.+....-...-.++.+++|++++++.......+.++.+|..+... ...+.-........++++|..+|... ...
T Consensus 108 ---~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-~~~~~vG~~P~~~a~~p~g~~vyv~~-~~~- 181 (381)
T COG3391 108 ---VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-TATIPVGNTPTGVAVDPDGNKVYVTN-SDD- 181 (381)
T ss_pred ---eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-EEEEecCCCcceEEECCCCCeEEEEe-cCC-
Confidence 111111111223578999999998876654567889999877321 12222222233456778888877765 221
Q ss_pred CCCCCCeEEEEeeCCCCCCCCCc--eE--EeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeeccc
Q 004866 285 GQEADNHYLLRCPVDASFPSRTW--ES--VFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360 (726)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~--~~--v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~ 360 (726)
..|..++.. . ..-+ .. .+..........+...+.++++....+....+.+++..++. +.
T Consensus 182 ------~~v~vi~~~-~--~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v~-- 244 (381)
T COG3391 182 ------NTVSVIDTS-G--NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------VT-- 244 (381)
T ss_pred ------CeEEEEeCC-C--cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------EE--
Confidence 236666654 1 1111 10 11111111223455566777777665544566677765432 10
Q ss_pred ccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEE
Q 004866 361 HPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNI 412 (726)
Q Consensus 361 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~ 412 (726)
....|.... ...+...++++..+.+..+. ...++.+|..+..+..
T Consensus 245 ---~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~~ 289 (381)
T COG3391 245 ---ATDLPVGSG-APRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVVK 289 (381)
T ss_pred ---EeccccccC-CCCceeECCCCCEEEEEecC---CCeEEEEeCCCCceee
Confidence 111111110 01122335666655443333 7788999987766543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.77 E-value=26 Score=36.19 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=64.3
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEe-cCC------------C
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVT-DQN------------K 190 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~-~~~------------~ 190 (726)
-++++-||..+|-... ..+|.+|-+++++...+.. .-.+.-++|.|+.. |... +.. .
T Consensus 240 ~v~v~~DGti~As~s~-----dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~---~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCSN-----DQTLRVWVVATKQCKAELREHEHPVECIAWAPESS---YPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred EEEecCCeeEEEecCC-----CceEEEEEeccchhhhhhhccccceEEEEeccccc---CcchhhccCCCCCccEEEeec
Confidence 3568889987765421 2468999999985443322 22344567877643 2211 100 1
Q ss_pred CCceEEEEEcCCCCceeEEeeec-CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 191 RPYQIYCSIIGSTDEDALLLEES-NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 191 ~~~~l~~~~l~t~~~~~lv~~~~-d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+..-|..+++.++. ++++-. .+.+..++.++|.||||+-.+.++ .|.++|+.+
T Consensus 312 rDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~ 365 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKN 365 (406)
T ss_pred ccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEecc
Confidence 22346677887763 333322 233456789999999997555543 366677765
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.71 E-value=7.7 Score=37.61 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=47.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCc----EEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceE--E
Q 004866 124 EELSEVSPDHKFLAYTMYDKDND----YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI--Y 196 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e----~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l--~ 196 (726)
+.+-.++||||+.+=++...|.+ .-.||.+-+ +++....-. .....+++|+-|.+.+||+.. ..+.| |
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs----ln~~V~a~ 185 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDS----LNYEVDAY 185 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEcc----CceEEeee
Confidence 34456899999965554433321 123555443 333222211 223457899999999999842 23456 6
Q ss_pred EEEcCCCC--ceeEEee
Q 004866 197 CSIIGSTD--EDALLLE 211 (726)
Q Consensus 197 ~~~l~t~~--~~~lv~~ 211 (726)
-+|..+++ ....+|.
T Consensus 186 dyd~~tG~~snr~~i~d 202 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFD 202 (310)
T ss_pred ecCCCcccccCcceeEE
Confidence 66677775 4444554
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=87.61 E-value=1.9 Score=32.82 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=26.8
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCC--CCCCCCccEEEEEcCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPK--YKKENQNPGLLHGHGAYGEL 507 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~--~~~~~~~P~vl~~hGg~~~~ 507 (726)
...|.+|...+.+.||.-|...=+.++. ....++.|.|++.||-.+++
T Consensus 7 ~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss 56 (63)
T PF04083_consen 7 KHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSS 56 (63)
T ss_dssp HTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--G
T ss_pred HcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccCh
Confidence 3568899999999999988876555543 22446678999999966543
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.39 E-value=5.1 Score=39.98 Aligned_cols=102 Identities=11% Similarity=-0.055 Sum_probs=58.2
Q ss_pred eeeCCCCCE-EEEEEeCCCCcEEEEEEEECCCCceeccc-c-cc--ccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 127 SEVSPDHKF-LAYTMYDKDNDYFTLSVRNLNSGALCSKP-Q-AV--RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 127 ~~~SPDG~~-la~~~~~~g~e~~~l~v~dl~tg~~~~~~-~-~~--~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+.++|--.+ +||. .+.|.. -+++|+.++....+. . .+ -++.-.|||||++||-+.++-.....-|=++|..
T Consensus 73 i~~~p~~~ravafA-RrPGtf---~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 73 IAFHPALPRAVAFA-RRPGTF---AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred eecCCCCcceEEEE-ecCCce---EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 457887666 5555 566753 678999888654332 2 22 3456789999999988877643333334444543
Q ss_pred CCCceeEEeeecC-CceEEEEEEcCCCcEEEEEE
Q 004866 202 STDEDALLLEESN-ENVYVNIRHTKDFHFVCVHT 234 (726)
Q Consensus 202 t~~~~~lv~~~~d-~~~~~~~~~s~Dg~~l~~~~ 234 (726)
..-..+--+.... .+ -.+.|.+||+.|++..
T Consensus 149 ~~fqrvgE~~t~GiGp--Hev~lm~DGrtlvvan 180 (366)
T COG3490 149 EGFQRVGEFSTHGIGP--HEVTLMADGRTLVVAN 180 (366)
T ss_pred cccceecccccCCcCc--ceeEEecCCcEEEEeC
Confidence 2211111111000 01 1467899999987643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.34 E-value=6.3 Score=39.34 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=73.3
Q ss_pred EEeecccccccCCceE---EeeceeeCCCCC---EEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCC
Q 004866 107 KLLDYNQEAERFGGYA---YEELSEVSPDHK---FLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDG 178 (726)
Q Consensus 107 ~lld~n~~~~~~~~~~---~~~~~~~SPDG~---~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg 178 (726)
.+.|.|++...-. |. .+..-+|||=.. .||.. .+ ..++.+-|+++|....... .+.+-.+.|||-.
T Consensus 127 KVWDtnTlQ~a~~-F~me~~VYshamSp~a~sHcLiA~g--tr---~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 127 KVWDTNTLQEAVD-FKMEGKVYSHAMSPMAMSHCLIAAG--TR---DVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred EEeecccceeeEE-eecCceeehhhcChhhhcceEEEEe--cC---CCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 4578887764311 11 233346788443 34443 22 3569999999997654332 4577889999999
Q ss_pred CEEEEEEecCCCCCceEEEEEcC--CCCc---------eeEEee--ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEE
Q 004866 179 QALIYVVTDQNKRPYQIYCSIIG--STDE---------DALLLE--ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 245 (726)
Q Consensus 179 ~~l~y~~~~~~~~~~~l~~~~l~--t~~~---------~~lv~~--~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 245 (726)
.+++++..-+. .+.++|+. ++.- ...+.+ .....-+-+++|+.||++++.. ++.+.+.+.
T Consensus 201 e~vLatgsaDg----~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~---gtd~r~r~w 273 (397)
T KOG4283|consen 201 EWVLATGSADG----AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC---GTDDRIRVW 273 (397)
T ss_pred eeEEEecCCCc----eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc---cCccceEEe
Confidence 99999864322 23333332 1110 000111 0011123468999999998632 233456666
Q ss_pred eCCCCC
Q 004866 246 NAADPF 251 (726)
Q Consensus 246 d~~~~~ 251 (726)
+...+.
T Consensus 274 n~~~G~ 279 (397)
T KOG4283|consen 274 NMESGR 279 (397)
T ss_pred ecccCc
Confidence 665543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=87.28 E-value=8.8 Score=46.32 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=63.7
Q ss_pred ceeeCCCCCEEEEEEeC-CCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 126 LSEVSPDHKFLAYTMYD-KDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~-~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.++|-.||+++|.+.-. ..+....|+|++-+ |+...... .+--..++|-|.|..|+-+... .++ ..|..+.-+.
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~~-~~VvFfErNG 290 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PDR-HDVVFFERNG 290 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc-CCC-cEEEEEecCC
Confidence 35799999999997642 22236789999987 54333222 2344678999999999887642 222 3444443322
Q ss_pred CCceeEEee-ecCCceEEEEEEcCCCcEEEEEEc
Q 004866 203 TDEDALLLE-ESNENVYVNIRHTKDFHFVCVHTF 235 (726)
Q Consensus 203 ~~~~~lv~~-~~d~~~~~~~~~s~Dg~~l~~~~~ 235 (726)
-....-... .+...-...+.|++|+..|++...
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 111111111 112222357899999999988764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.98 E-value=62 Score=36.92 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=77.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC-----CCce---ec------cccccccceeEEecCCCEEEEEEecC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-----SGAL---CS------KPQAVRVSNIAWAKDGQALIYVVTDQ 188 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~-----tg~~---~~------~~~~~~~~~~~WspDg~~l~y~~~~~ 188 (726)
.+..++.+|||+..+-++. .-++.+||.. .|.. +. +...+.+-.+..||||+.|+..-.+.
T Consensus 456 aIWsi~~~pD~~g~vT~sa-----DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA-----DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ceeeeeecCCCCceEEecC-----CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 5677789999998766532 1245555532 2211 11 11244667889999999999886653
Q ss_pred CCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-Ee
Q 004866 189 NKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CI 267 (726)
Q Consensus 189 ~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~ 267 (726)
+ -+||..| +-+--.-+|.-.=+ ...+..|||++.|+-.+. +..-.+|=+|..+-. +-+....+.+- ..
T Consensus 531 T---VkVyflD--tlKFflsLYGHkLP--V~smDIS~DSklivTgSA-DKnVKiWGLdFGDCH---KS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 531 T---VKVYFLD--TLKFFLSLYGHKLP--VLSMDISPDSKLIVTGSA-DKNVKIWGLDFGDCH---KSFFAHDDSVMSVQ 599 (888)
T ss_pred e---EEEEEec--ceeeeeeecccccc--eeEEeccCCcCeEEeccC-CCceEEeccccchhh---hhhhcccCceeEEE
Confidence 2 2455544 22211112321111 135678999997754433 334567777764421 22333333322 22
Q ss_pred eeecCCEEEEEecCcc
Q 004866 268 VEHHEGFLYLFTDAAK 283 (726)
Q Consensus 268 ~~~~g~~l~~~t~~~~ 283 (726)
+-| ..+++|.+.+++
T Consensus 600 F~P-~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGKDG 614 (888)
T ss_pred Ecc-cceeEEEecCcc
Confidence 223 566777766553
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.85 E-value=46 Score=35.36 Aligned_cols=155 Identities=7% Similarity=0.086 Sum_probs=86.9
Q ss_pred eeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 171 NIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 171 ~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+.|.-+-+.++.+... ...|.++|+.+++ ...+.+.. .. .-.+.|.|..-.++++.... ..+-+.|+..
T Consensus 248 ~Ls~n~~~~nVLaSgsa----D~TV~lWD~~~g~p~~s~~~~~--k~-Vq~l~wh~~~p~~LLsGs~D--~~V~l~D~R~ 318 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSA----DKTVKLWDVDTGKPKSSITHHG--KK-VQTLEWHPYEPSVLLSGSYD--GTVALKDCRD 318 (463)
T ss_pred HHHhccccceeEEecCC----CceEEEEEcCCCCcceehhhcC--Cc-eeEEEecCCCceEEEecccc--ceEEeeeccC
Confidence 56788887888776432 3478889998887 33332221 11 22467877766655554432 3466667653
Q ss_pred CCCCeEEeeccCCceE-EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--C
Q 004866 250 PFSGLTLIWECEGLAH-CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--K 326 (726)
Q Consensus 250 ~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~ 326 (726)
+...-+.. .-.+.++ ..|.|.....++.+..+ ..|+.+|.. +++..-|+.. .++. .|.++... .
T Consensus 319 ~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tdd--------G~v~~~D~R-~~~~~vwt~~-AHd~--~ISgl~~n~~~ 385 (463)
T KOG0270|consen 319 PSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDD--------GTVYYFDIR-NPGKPVWTLK-AHDD--EISGLSVNIQT 385 (463)
T ss_pred ccccCceE-EeccceEEEEecCCCceeEEEecCC--------ceEEeeecC-CCCCceeEEE-eccC--CcceEEecCCC
Confidence 22111111 1122222 34555555445554433 238888887 7766677643 4543 46666555 3
Q ss_pred CEEEEEEEeCCeeEEEEEecC
Q 004866 327 THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 327 ~~lv~~~~~~g~~~l~~~~l~ 347 (726)
..++.+...++.-.|+.++.+
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred CcceeeccccceEEEEeecCC
Confidence 577777777777777766654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.44 E-value=5.6 Score=40.21 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=70.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce------eccccccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL------CSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~------~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
...++|||.++++|..+ |... |-|.-.+..+. +...+...+..+.|.|++-.|+-...|..-|-...|+
T Consensus 103 At~V~WsP~enkFAVgS---gar~--isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 103 ATCVKWSPKENKFAVGS---GARL--ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred eeeEeecCcCceEEecc---CccE--EEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee
Confidence 34568999999999874 3323 34444433321 1122234567899999987776665554444445667
Q ss_pred EEcCCCCc-----ee-----EEeee-cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 198 SIIGSTDE-----DA-----LLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 198 ~~l~t~~~-----~~-----lv~~~-~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
..+++... .. ++.+- ....+.-++.|||+|..|.+...+. -+.+.|...+
T Consensus 178 K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds---~v~~~da~~p 238 (361)
T KOG1523|consen 178 KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS---TVSFVDAAGP 238 (361)
T ss_pred eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC---ceEEeecCCC
Confidence 77654421 11 12121 1223344688999999999877643 4677776654
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=85.78 E-value=14 Score=39.55 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=58.7
Q ss_pred EEEEEEEECCCCceecccccc--c--cceeEE--ecCCCEEEEEEecCCCCCceEEEEEc-CCCC-ceeEEeeecC----
Q 004866 147 YFTLSVRNLNSGALCSKPQAV--R--VSNIAW--AKDGQALIYVVTDQNKRPYQIYCSII-GSTD-EDALLLEESN---- 214 (726)
Q Consensus 147 ~~~l~v~dl~tg~~~~~~~~~--~--~~~~~W--spDg~~l~y~~~~~~~~~~~l~~~~l-~t~~-~~~lv~~~~d---- 214 (726)
...|+|||+.+.+.++....+ . .-.+.| .|+...=|.... -...||++-- ..+. ....|.+-+.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a----Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA----LSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE------EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe----ccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 357999999999887753322 1 123444 454443333322 2235655433 2222 1111211111
Q ss_pred --------------CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-------------------C
Q 004866 215 --------------ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-------------------E 261 (726)
Q Consensus 215 --------------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-------------------~ 261 (726)
+....++..|.|.|+|+++..-. .++..+|+.++. .++.+-.- .
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~--GdvrqYDISDP~-~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH--GDVRQYDISDPF-NPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTT--TEEEEEE-SSTT-S-EEEEEEE-BTTTT-B--TTS------
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccC--CcEEEEecCCCC-CCcEEeEEEECcEeccCCCccccccccC
Confidence 23346788999999999988744 468888988864 33332210 0
Q ss_pred Cc-eEEeeeecCCEEEEEec
Q 004866 262 GL-AHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 262 ~~-~~~~~~~~g~~l~~~t~ 280 (726)
++ .-..++-||++||+.+.
T Consensus 374 GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp S----EEE-TTSSEEEEE--
T ss_pred CCCCeEEEccCCeEEEEEee
Confidence 01 12356778999998765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=85.55 E-value=5.9 Score=39.44 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=71.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee-ccc-c------ccccceeEEec--CCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC-SKP-Q------AVRVSNIAWAK--DGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~-~~~-~------~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~ 192 (726)
.+..+.|-|++.+||-..+ ..|.+|+++.+..+ ... . ...+.+-.||| ||..++.+ .+
T Consensus 125 ~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d----- 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD----- 192 (370)
T ss_pred ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CC-----
Confidence 4566789999999988752 24889999887552 211 1 12456778999 78777665 22
Q ss_pred ceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 193 YQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
..++.+|+.|...-- -.+........++.+.|+.++++++..+.+ .|.++|+...
T Consensus 193 ~tl~~~D~RT~~~~~-sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg--yvriWD~R~t 247 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNN-SIEDAHGQRVRDLDFNPNKQHILVTCGDDG--YVRIWDTRKT 247 (370)
T ss_pred CcEEEEEccchhhhc-chhhhhcceeeeccCCCCceEEEEEcCCCc--cEEEEeccCC
Confidence 257777877653211 112222223346778999999888776554 4566676553
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.52 E-value=11 Score=39.47 Aligned_cols=195 Identities=7% Similarity=-0.038 Sum_probs=96.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+....||++|.++.- .|.+| .|.+|++.-........ .+.+..+++||....| .+..++. .|.+.|.
T Consensus 140 ~Vr~m~ws~~g~wmiS-gD~gG----~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF-~t~SdDg----~ikiWdf 209 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMIS-GDKGG----MIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKF-LTCSDDG----TIKIWDF 209 (464)
T ss_pred cceeEEEccCCCEEEE-cCCCc----eEEecccchhhhHHhhHhhhhhhheeccCCCCcee-EEecCCC----eEEEEec
Confidence 5777899999999744 45555 47888876543332211 3567789999955444 4444432 5666666
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t 279 (726)
..+.+++++ ... ....-.+.|.|....|+ +.... +-|-++|..++. .+..+.....- ....+.+++..|+-.+
T Consensus 210 ~~~kee~vL-~GH-gwdVksvdWHP~kgLia-sgskD--nlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 210 RMPKEERVL-RGH-GWDVKSVDWHPTKGLIA-SGSKD--NLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred cCCchhhee-ccC-CCCcceeccCCccceeE-EccCC--ceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence 555533333 111 11123578888665444 33322 256677776642 11111111111 1234456665444332
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEe
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVS 345 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~ 345 (726)
++. ..+++.+.. ......+-.+..++.-..+.+....|+.+.-.+|.-..+.++
T Consensus 284 -kD~------~~kv~DiR~-----mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 284 -KDQ------SCKVFDIRT-----MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred -CCc------eEEEEehhH-----hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 221 233333321 111111112233333334455566777777667765555554
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=84.92 E-value=18 Score=38.27 Aligned_cols=116 Identities=10% Similarity=0.049 Sum_probs=73.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC--ceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG--ALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg--~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+...+|+|-...|--++..++ .|.|+|+.++ +...... ...+..++|.|=+..|+-+..- ...|.++
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd~----~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----D~tV~Lw 300 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDDG----KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----DKTVALW 300 (422)
T ss_pred ceehhhccccchhhheeecCCC----eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC----CCcEEEe
Confidence 5677889998887754443333 5999999964 2111111 3356678999988888777532 2368888
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
|+..-......++...+. ...+.|||..+.|+.++. ....+.++|+..
T Consensus 301 DlRnL~~~lh~~e~H~de-v~~V~WSPh~etvLASSg--~D~rl~vWDls~ 348 (422)
T KOG0264|consen 301 DLRNLNKPLHTFEGHEDE-VFQVEWSPHNETVLASSG--TDRRLNVWDLSR 348 (422)
T ss_pred echhcccCceeccCCCcc-eEEEEeCCCCCceeEecc--cCCcEEEEeccc
Confidence 876554333344433333 346899999999886665 345566677754
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=84.89 E-value=1.5 Score=46.58 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 592 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~ 592 (726)
...-+.+++++|.++++-++++|.+.|.|+||+-++.-+.
T Consensus 136 G~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 136 GYRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred cHHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 3456788999999999999999999999999988876543
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.1 Score=43.13 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=54.9
Q ss_pred CCcEEEEEccCCCCCCCCc-ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC----C-
Q 004866 522 RGWVVAFADVRGGGGGGKK-WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC----P- 595 (726)
Q Consensus 522 ~G~~v~~~d~RG~g~~g~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~----p- 595 (726)
.-..|++|-||-..-+... -............+.|+.+|.++.+++- -+...+.|.|||.|+.+...++..+ |
T Consensus 44 ~~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl 122 (207)
T PF11288_consen 44 GVCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEEIAGDPL 122 (207)
T ss_pred cCCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHHhcCchH
Confidence 3467889999965532211 0111111123357899999999888753 2345899999999999999998764 2
Q ss_pred --CceeEEEEeCCcc
Q 004866 596 --DLFRAVVLEVPFL 608 (726)
Q Consensus 596 --~~f~a~v~~~p~~ 608 (726)
.++.|-+...++.
T Consensus 123 ~~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 123 RKRLVAAYLIGYPVT 137 (207)
T ss_pred HhhhheeeecCcccc
Confidence 2445555444543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=84.15 E-value=17 Score=40.11 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=51.9
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
...++||+.++++.... +|+ |.++|..++-............++|.|||.-|+.. . ...+|...|++-..
T Consensus 263 ~~ca~sp~E~kLvlGC~-DgS----iiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~-s----~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 263 ICCARSPSEDKLVLGCE-DGS----IILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVG-S----EQGELQCFDMALSP 332 (545)
T ss_pred eEEecCcccceEEEEec-CCe----EEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEE-c----CCceEEEEEeecCc
Confidence 34578999999999863 453 89999877743322123345678999999766554 2 23478888887665
Q ss_pred -ceeEEeeec
Q 004866 205 -EDALLLEES 213 (726)
Q Consensus 205 -~~~lv~~~~ 213 (726)
.-.++-++.
T Consensus 333 i~~qLlsEd~ 342 (545)
T PF11768_consen 333 IKMQLLSEDA 342 (545)
T ss_pred cceeeccccC
Confidence 334444443
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=83.87 E-value=1.7 Score=42.99 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
+.++...+..+.++ -...+|.+.|||+||.++..++..
T Consensus 111 ~~~~~~~~~~~~~~--~p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 111 YNQVLPELKSALKQ--YPDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHHhh--CCCceEEEEccCHHHHHHHHHHHH
Confidence 34444444444443 234689999999999999887664
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=83.73 E-value=6.1 Score=37.81 Aligned_cols=81 Identities=21% Similarity=0.134 Sum_probs=47.6
Q ss_pred cchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHHcCCCCCCcEEEEEecccHHHHHH
Q 004866 511 RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCA-RFLIEKEIVKEHKLAGWGYSAGGLLVAA 589 (726)
Q Consensus 511 ~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~l~~~ 589 (726)
.|......|. ..+.|+.++.+|.+.. .. ....++++.... +.+.+ .....++.++|+|+||.++..
T Consensus 14 ~~~~~~~~l~-~~~~v~~~~~~g~~~~-~~---------~~~~~~~~~~~~~~~l~~--~~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALR-GRRDVSALPLPGFGPG-EP---------LPASADALVEAQAEAVLR--AAGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcC-CCccEEEecCCCCCCC-CC---------CCCCHHHHHHHHHHHHHH--hcCCCCeEEEEECHHHHHHHH
Confidence 3444455554 4688999999987531 11 113445544432 22322 223467899999999999877
Q ss_pred HHHc---CCCceeEEEEe
Q 004866 590 AINC---CPDLFRAVVLE 604 (726)
Q Consensus 590 ~~~~---~p~~f~a~v~~ 604 (726)
.+.+ .+.....++..
T Consensus 81 ~a~~l~~~~~~~~~l~~~ 98 (212)
T smart00824 81 VAARLEARGIPPAAVVLL 98 (212)
T ss_pred HHHHHHhCCCCCcEEEEE
Confidence 7764 34445555544
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.67 E-value=84 Score=35.54 Aligned_cols=158 Identities=11% Similarity=-0.016 Sum_probs=82.3
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
..+.+|+||+.+|+.. ..+ .|++-... +.............+.|.++| +++-. .+.. ...+.+.. .++.
T Consensus 337 ~s~avS~dg~~~A~v~-~~~----~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g-~vWtv-~~g~--~~~l~~~~-~~G~ 405 (557)
T PRK13615 337 DAATLSADGRQAAVRN-ASG----VWSVGDGD-RDAVLLDTRPGLVAPSLDAQG-YVWST-PASD--PRGLVAWG-PDGV 405 (557)
T ss_pred ccceEcCCCceEEEEc-CCc----eEEEecCC-CcceeeccCCccccCcCcCCC-CEEEE-eCCC--ceEEEEec-CCCc
Confidence 5678999999999983 222 57776654 333333223346788999988 56533 3322 22333322 2222
Q ss_pred ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEe-ec------cCCc-eEEeeeecCCEEE
Q 004866 205 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI-WE------CEGL-AHCIVEHHEGFLY 276 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~------~~~~-~~~~~~~~g~~l~ 276 (726)
...+-..-....-...+..|+||-.+++.....+...|++.-+....+.++.| .. .... ....| -+++.|.
T Consensus 406 ~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W-~~~~~la 484 (557)
T PRK13615 406 GHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATW-VDELDVA 484 (557)
T ss_pred eEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEE-cCCCEEE
Confidence 11111111122234568899999999887765555566663332222323334 21 1111 11223 4566787
Q ss_pred EEecCcccCCCCCCeEEEEeeCC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
+++...+. +..++.+++.
T Consensus 485 Vl~~~~~~-----~~~v~~v~v~ 502 (557)
T PRK13615 485 TLTLAPDG-----ERQVELHQVG 502 (557)
T ss_pred EEeccCCC-----CceEEEEECC
Confidence 87743332 3456677776
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=83.57 E-value=13 Score=39.40 Aligned_cols=115 Identities=9% Similarity=0.096 Sum_probs=70.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+..++|+|=+..|.-+.+.++ +|.++|+..-.....+. .+.+..+.|||+...++-++.. ...|.++|
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~----tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWD 345 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADK----TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWD 345 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCC----cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEe
Confidence 4556688887776655544333 59999997754332222 4467889999999999877532 23566666
Q ss_pred cCCCCc-----------eeEEeeecCCc-eEEEEEEcCCCcEEEEEEcCCCceEEEEE
Q 004866 200 IGSTDE-----------DALLLEESNEN-VYVNIRHTKDFHFVCVHTFSTTSSKVFLI 245 (726)
Q Consensus 200 l~t~~~-----------~~lv~~~~d~~-~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 245 (726)
+..-.+ ..++|.-.... -..++.|.|..-+++.++.....-+||.+
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 643221 12333222111 12367899999998888877655566654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.30 E-value=3.5 Score=42.29 Aligned_cols=113 Identities=9% Similarity=0.137 Sum_probs=68.0
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc-eecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~-~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
..++|+|.+ ..|+ .++|.+.||..|...-+ ++.+-. ...+.++.|||-|+-|+-.++|. .|.++.+.
T Consensus 233 N~IswnPea--fnF~---~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----sIRIf~~~ 302 (433)
T KOG0268|consen 233 NTICWNPEA--FNFV---AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----SIRIFPVN 302 (433)
T ss_pred cceecCccc--ccee---eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc-----eEEEeecC
Confidence 457899922 3344 36778899999975432 222211 23567789999999887766654 24444544
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+. .+-+|....-.....+.||-|.+||+- .++...-.||...+..
T Consensus 303 ~~~-SRdiYhtkRMq~V~~Vk~S~Dskyi~S-GSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 303 HGH-SRDIYHTKRMQHVFCVKYSMDSKYIIS-GSDDGNVRLWKAKASE 348 (433)
T ss_pred CCc-chhhhhHhhhheeeEEEEeccccEEEe-cCCCcceeeeecchhh
Confidence 432 223444333333456889999999863 3333445777777654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.21 E-value=18 Score=41.59 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=67.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEE-CC-CCceecccc--c--cccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRN-LN-SGALCSKPQ--A--VRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~d-l~-tg~~~~~~~--~--~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
....++||.++++|-+ +.+|. |.||. .. ++....-+. + ..+..++||+||.+||=. ++-..+.+
T Consensus 208 ~t~~~~spn~~~~Aa~-d~dGr----I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG-----G~E~VLv~ 277 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAG-DSDGR----ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG-----GREGVLVL 277 (792)
T ss_pred ceeEEeccccceEEEe-ccCCc----EEEEeccccccccccceEEEecccccceeEEecCCceEeec-----ccceEEEE
Confidence 4456899999999887 45563 66654 43 232222111 2 356789999999877532 33446778
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+.++++. ...+-. -.. -..++.+|||+....+... ++.|.++.+.+
T Consensus 278 Wq~~T~~-kqfLPR-Lgs-~I~~i~vS~ds~~~sl~~~---DNqI~li~~~d 323 (792)
T KOG1963|consen 278 WQLETGK-KQFLPR-LGS-PILHIVVSPDSDLYSLVLE---DNQIHLIKASD 323 (792)
T ss_pred EeecCCC-cccccc-cCC-eeEEEEEcCCCCeEEEEec---CceEEEEeccc
Confidence 8888876 223321 111 2346788999988766655 34666666543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.17 E-value=57 Score=33.24 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=42.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVV 185 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~ 185 (726)
++..+++.|.|+ ||.++..++ .|..|||-.|+.-.... ......+.|+|.|.+++...
T Consensus 129 ~Vt~lsiHPS~K-LALsVg~D~----~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 129 QVTDLSIHPSGK-LALSVGGDQ----VLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred ccceeEecCCCc-eEEEEcCCc----eeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence 578889999998 577663322 48999999887544333 33456699999999988864
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.17 E-value=48 Score=35.40 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=71.3
Q ss_pred EeeceeeCCCCC-EEEEEEeCCCCcEEEEEEEECCCCceecccc------ccccceeEEecCCCEEEEEE-ecCCCCCce
Q 004866 123 YEELSEVSPDHK-FLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ------AVRVSNIAWAKDGQALIYVV-TDQNKRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SPDG~-~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~------~~~~~~~~WspDg~~l~y~~-~~~~~~~~~ 194 (726)
.+...+|.|-.. .|+.+-|..| +|-+||+.+.+...... ...++.+.|+|-+..-+|.. +|. .
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G----~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG-----t 258 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGG----QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG-----T 258 (498)
T ss_pred ceEEEEecccCcceEEEEccCCC----cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc-----e
Confidence 466678999877 5555556666 58999997544332211 23467889999776555543 342 5
Q ss_pred EEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCC
Q 004866 195 IYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS 252 (726)
Q Consensus 195 l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~ 252 (726)
|...|+.....+.+.-...+...|.+..++.+...+++..+-+ ..-++|+.++..
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s 313 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGS 313 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCc
Confidence 7777877665322222223444566777888888777766544 445556655433
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=83.10 E-value=1.8 Score=46.25 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN 592 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~ 592 (726)
..+++.+.++.|+++---.+-+|.++|||+||.|+..++.
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 4567788888888653222236999999999999988875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.89 E-value=20 Score=37.21 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=70.8
Q ss_pred eEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec---ccc-ccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 121 YAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS---KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 121 ~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~---~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
..++.+++|||..+-+.++.+.+|+ |.|||+.++.... ... ...+..+.|+-+-..|+.- .|. ..+-
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~Dgs----IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG-~Dd----Gt~~ 327 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGS----IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASG-GDD----GTLS 327 (440)
T ss_pred ccchhhhccCCccCceEEeeecCce----EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeec-CCC----ceEE
Confidence 3478889999999999888887774 9999999984332 111 3355668998776633332 222 2344
Q ss_pred EEEcCCCC--ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 197 CSIIGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 197 ~~~l~t~~--~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
++||..-+ ..+..|.-...+ ...+.|+|....++..+.. .++|.++|++-
T Consensus 328 iwDLR~~~~~~pVA~fk~Hk~p-ItsieW~p~e~s~iaasg~--D~QitiWDlsv 379 (440)
T KOG0302|consen 328 IWDLRQFKSGQPVATFKYHKAP-ITSIEWHPHEDSVIAASGE--DNQITIWDLSV 379 (440)
T ss_pred EEEhhhccCCCcceeEEeccCC-eeEEEeccccCceEEeccC--CCcEEEEEeec
Confidence 44553322 223344333333 2468899988776654443 35566666643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.26 E-value=52 Score=32.12 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=34.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQAL 181 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l 181 (726)
.+-....|-|..++|-. +|+ -.+++||++||+..+... ...+..+.|..++.-+
T Consensus 61 EVlD~~~s~Dnskf~s~---GgD--k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv 116 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFASC---GGD--KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVV 116 (307)
T ss_pred eeeeccccccccccccC---CCC--ceEEEEEcccCeeeeecccccceeeEEEecCcceEE
Confidence 34455678888887532 333 468999999998776433 3355667776665433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.23 E-value=1.3e+02 Score=36.61 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=41.7
Q ss_pred eeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC
Q 004866 171 NIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 248 (726)
Q Consensus 171 ~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 248 (726)
.+.|--||+.++...........++..++-. +.-+ -..++...-...++|-|.|..|+......+.++|....-.
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln--s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN--STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh--cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 4899999998888655433332345555543 2100 0011222222347889999888766655555566666543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=81.99 E-value=13 Score=30.46 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=36.4
Q ss_pred EEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 147 YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 147 ~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.-.|..+|+.|++...+.. .....+++-|+|++.|+++..- ..+|.++.|..
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~----~~Ri~rywl~G 88 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG----RYRILRYWLKG 88 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG----GTEEEEEESSS
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc----CceEEEEEEeC
Confidence 3469999999998654432 3344679999999999998643 35788887753
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.84 E-value=17 Score=43.09 Aligned_cols=149 Identities=9% Similarity=0.001 Sum_probs=84.9
Q ss_pred EeeceeeCCCCC-EEEEEEeCCCCcEEEEEEEECCCCceeccc-----cccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHK-FLAYTMYDKDNDYFTLSVRNLNSGALCSKP-----QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~-~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.+.++.|+|.+. .||=.. .+ .+|+|||+..-+ .+.+ ..+.+..++|...-..|+-..... .+..
T Consensus 118 ~V~gLDfN~~q~nlLASGa-~~----geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s----g~~~ 187 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGA-DD----GEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS----GRAV 187 (1049)
T ss_pred ceeeeeccccCCceeeccC-CC----CcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhhHHhhccCCC----CCce
Confidence 566789999988 555432 22 359999997632 1211 133567788876666665543322 2455
Q ss_pred EEEcCCCCceeEEeeecCC-ceEEEEEEcCCCcEEEE-EEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCC
Q 004866 197 CSIIGSTDEDALLLEESNE-NVYVNIRHTKDFHFVCV-HTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEG 273 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~-~~~~~~~~s~Dg~~l~~-~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~ 273 (726)
++|+...+ .++-+.+... .....+.|.||...-++ .+.++....|-++|+.......+.+.....++ ...|.+.+.
T Consensus 188 iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 188 IWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred eccccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc
Confidence 66775442 2222222222 22346899999865444 44555557788888765444444443333343 345666666
Q ss_pred EEEEEecCc
Q 004866 274 FLYLFTDAA 282 (726)
Q Consensus 274 ~l~~~t~~~ 282 (726)
+|++.+-.+
T Consensus 267 ~lllSsgkD 275 (1049)
T KOG0307|consen 267 RLLLSSGKD 275 (1049)
T ss_pred hhhhcccCC
Confidence 777766544
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.70 E-value=5.2 Score=43.45 Aligned_cols=100 Identities=20% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCCccEEEEEcCCCCCCCC-----------------ccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCc
Q 004866 491 ENQNPGLLHGHGAYGELLD-----------------KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNS 553 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~-----------------~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~ 553 (726)
..+.|+|++.-||||.+.. |.+...--.|.+.+ .++.+|.+=+.||.++-. ..........
T Consensus 98 p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~a-dLvFiDqPvGTGfS~a~~-~e~~~d~~~~ 175 (498)
T COG2939 98 PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFA-DLVFIDQPVGTGFSRALG-DEKKKDFEGA 175 (498)
T ss_pred CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCC-ceEEEecCcccCcccccc-cccccchhcc
Confidence 3568999999999985421 11100112344443 467788666666665411 1111122233
Q ss_pred HHHHHHHHHHHHHc--CC-CCCCcEEEEEecccHHHHHHHHH
Q 004866 554 IKDFISCARFLIEK--EI-VKEHKLAGWGYSAGGLLVAAAIN 592 (726)
Q Consensus 554 ~~D~~~~~~~l~~~--~~-~d~~ri~i~G~S~GG~l~~~~~~ 592 (726)
-+|+....+...+. .+ -.-.+..|+|-||||+-...+|.
T Consensus 176 ~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 176 GKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred chhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 45555544444332 01 11257899999999987666554
|
|
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=81.51 E-value=4.2 Score=38.30 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCcee-EEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFR-AVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~p~~ 608 (726)
..+.+|.+.++... ....++.++|||||..++..++.+.+-... .++..+|=+
T Consensus 92 ~~L~~f~~gl~a~~----~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~ 145 (177)
T PF06259_consen 92 PRLARFLDGLRATH----GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGM 145 (177)
T ss_pred HHHHHHHHHhhhhc----CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCC
Confidence 34555555554332 345799999999999999998886333333 334444433
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.35 E-value=51 Score=33.35 Aligned_cols=93 Identities=9% Similarity=0.100 Sum_probs=56.8
Q ss_pred EEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC--CCce-eEEeeecCCce---EEE
Q 004866 149 TLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS--TDED-ALLLEESNENV---YVN 220 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t--~~~~-~lv~~~~d~~~---~~~ 220 (726)
+|.+||+..++.+-... .+.+..+.-||+|..+.=...+ ..|.++++.- +..+ +.+|+.....| .+.
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd-----~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD-----NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc-----ceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 47788886665544332 3456777888888866554443 2455555532 2233 55666544433 256
Q ss_pred EEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 221 IRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 221 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+|||+++++...+.+ ..+|++|...
T Consensus 272 cswsp~~~~i~ags~d---r~vyvwd~~~ 297 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSAD---RFVYVWDTTS 297 (338)
T ss_pred eeccCCCCcccccccc---ceEEEeeccc
Confidence 8999999998655543 3578888755
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.14 E-value=2 Score=48.64 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHc--C--CCC---CCcEEEEEecccHHHHHHHHHcCCCceeEEE
Q 004866 555 KDFISCARFLIEK--E--IVK---EHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602 (726)
Q Consensus 555 ~D~~~~~~~l~~~--~--~~d---~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 602 (726)
+=+.+|++++.+. + .-+ |.-|.+.||||||+.+-++++ +|+..+..|
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~sV 210 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGSV 210 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccchh
Confidence 3445677766653 2 223 778999999999988887777 576555544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.11 E-value=68 Score=32.84 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=76.7
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-------ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-------AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-------~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
--|+-.++|.++. .. -|++||.-||+...-.. .....++.|||||..||-- .. .-|...++.
T Consensus 119 ~qP~t~l~a~ssr-~~----PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-yk-----rcirvFdt~ 187 (406)
T KOG2919|consen 119 DQPSTNLFAVSSR-DQ----PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YK-----RCIRVFDTS 187 (406)
T ss_pred CCCccceeeeccc-cC----ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-cc-----ceEEEeecc
Confidence 3588888777643 22 39999999998664221 1245678999999999753 11 134445553
Q ss_pred CCC---ceeEEeee-cC--CceEEEEEEcCCCc-EEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCC
Q 004866 202 STD---EDALLLEE-SN--ENVYVNIRHTKDFH-FVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEG 273 (726)
Q Consensus 202 t~~---~~~lv~~~-~d--~~~~~~~~~s~Dg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~ 273 (726)
.+. ....++.. .. .....-+++||-.. .+++.+.. ....||.-+-. +....+....+++. ..+-++|.
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~~~---~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecCCC---CceeeecccCCCeeeEEeccCcC
Confidence 222 11111111 00 11112245565443 44443321 12334443322 34455555555543 45567898
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
+||.-+... -+|...|+.
T Consensus 264 ~lfsGaRk~--------dkIl~WDiR 281 (406)
T KOG2919|consen 264 KLFSGARKD--------DKILCWDIR 281 (406)
T ss_pred eecccccCC--------CeEEEEeeh
Confidence 887655443 246666664
|
|
| >PLN02408 phospholipase A1 | Back alignment and domain information |
|---|
Probab=80.70 E-value=2.3 Score=44.69 Aligned_cols=40 Identities=15% Similarity=-0.076 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
.+.+.+.++.|+++---.+.+|.|.|||+||.|+..++..
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3456677777776422223579999999999999887764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.65 E-value=62 Score=31.99 Aligned_cols=143 Identities=7% Similarity=0.050 Sum_probs=79.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+-+++||+....++++..-+|+ |.++|+.- ...++.. ...+.++.|.+-.+.++.+.+ -...-+||.-+
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGS----Lrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS--WD~TiKLW~~~ 135 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGS----LRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS--WDGTIKLWDPN 135 (311)
T ss_pred eeEeeecCCCcceEEEEecCce----EEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeec--cCCceEeecCC
Confidence 4456899999999998765553 88888432 2222221 235678899998888888752 11223444333
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-CceEEeeeecCCEEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GLAHCIVEHHEGFLYLF 278 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~ 278 (726)
. + ....+|.+.+...| ...|||--.-++.+.+.+..-.+|=++..+ . ...+.... +-....+++-+..+++.
T Consensus 136 r--~-~Sv~Tf~gh~~~Iy-~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--k-~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 136 R--P-NSVQTFNGHNSCIY-QAAFSPHIPNLFASASGDGTLRLWDVRSPG--K-FMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred C--C-cceEeecCCccEEE-EEecCCCCCCeEEEccCCceEEEEEecCCC--c-eeEEEeccceeEeecccccCCcEEEe
Confidence 2 2 33445655444333 567888877776666555555555444432 2 22232222 22234555555555554
Q ss_pred ec
Q 004866 279 TD 280 (726)
Q Consensus 279 t~ 280 (726)
..
T Consensus 209 g~ 210 (311)
T KOG0277|consen 209 GG 210 (311)
T ss_pred cC
Confidence 43
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.60 E-value=25 Score=38.24 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=54.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..-+|||||.-|.-+ -.+| .|.+|.- +|-.+. +.. ...+..++|.|++..++|+.. .++++..+.
T Consensus 107 ~~~gRW~~dGtgLlt~-GEDG----~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g------~h~~IKpL~ 174 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTA-GEDG----VIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG------GHISIKPLA 174 (737)
T ss_pred hhhcccCCCCceeeee-cCCc----eEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC------CeEEEeecc
Confidence 4455899999987543 2233 5777775 343222 112 446778999999999999843 256666654
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEE
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFV 230 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l 230 (726)
-. ...+-....| ...+.+.|++....|
T Consensus 175 ~n-~k~i~WkAHD-GiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 175 AN-SKIIRWRAHD-GLVLSLSWSTQSNII 201 (737)
T ss_pred cc-cceeEEeccC-cEEEEeecCccccce
Confidence 32 2222222222 334567777766644
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.23 E-value=4.2 Score=39.97 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.1
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 611 (726)
.+++|.|.||||.++..+...++.- |+.+|+.++.
T Consensus 195 g~~~~~g~Smgg~~a~~vgS~~q~P----va~~p~l~~~ 229 (371)
T KOG1551|consen 195 GNLNLVGRSMGGDIANQVGSLHQKP----VATAPCLNSS 229 (371)
T ss_pred ccceeeeeecccHHHHhhcccCCCC----cccccccccc
Confidence 6899999999999999888755543 4445665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 726 | ||||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 2e-54 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 5e-30 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 4e-26 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 1e-21 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 1e-21 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 2e-21 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 8e-21 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 9e-21 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 6e-19 | ||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 9e-19 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 2e-18 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 2e-18 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 2e-18 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 2e-18 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 2e-18 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 2e-18 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 4e-18 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 4e-18 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 4e-18 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 2e-05 |
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 726 | |||
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 1e-172 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 1e-140 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 1e-135 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 1e-126 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 1e-124 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 3e-15 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 6e-15 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 3e-13 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 5e-12 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 3e-11 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 7e-11 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 7e-11 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 8e-11 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 2e-10 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 1e-08 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 3e-08 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 4e-08 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 6e-08 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 1e-07 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 1e-07 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 3e-06 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 7e-06 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 2e-05 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 3e-05 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 1e-04 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 2e-04 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-04 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 6e-04 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 8e-04 |
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 511 bits (1317), Expect = e-172
Identities = 170/721 (23%), Positives = 306/721 (42%), Gaps = 73/721 (10%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
++ +E+ Y +A +D +L+ + +E S + + + P +G + YY R +GK Y +
Sbjct: 84 HLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIY 143
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
CR E+ ++D NQ AE E+ P+H
Sbjct: 144 CRVFTDKEP---------------GDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDL 188
Query: 136 LAYTMYDKDNDYFTLSVRNL-NSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQ 194
+A+++ N+ +T+ + + + + + I W D +L YV D+ R +
Sbjct: 189 VAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENK 248
Query: 195 IYCSIIGS-TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINA--ADPF 251
++ ++G ED L EE N + D + +C+ + S +++V L++ +
Sbjct: 249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308
Query: 252 SGLTLIWECEGLAHCIVEHH-EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV 310
+ L ++ E V+ H L + T+ A NH LL P PS W V
Sbjct: 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNE----GGAVNHKLLIAPRGQ--PSD-WSHV 361
Query: 311 FID-DQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK 369
+D + + +E + ++ + R R+ ++ L + P
Sbjct: 362 LVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMAD-SQDGVFKAGTGLREVVMEEPI 420
Query: 370 YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGT 429
+ +V +Y T R SS P+ D ++ +
Sbjct: 421 FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVR------------- 467
Query: 430 ASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYK 489
E+ D + Y E+ + D +PL+++Y
Sbjct: 468 -----------------EVGGGFD------AANYKVERRFATAPDQTKIPLSVVYHKDLD 504
Query: 490 KENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR-T 548
P +L+G+G+YG +D ++ + DRG + A A +RGG G+ W+ G +
Sbjct: 505 MSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYL 564
Query: 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608
K N+ DFI+ A FL+ ++ +LA G SAGGLL+ A +N PDLF+ + VPF+
Sbjct: 565 TKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFV 624
Query: 609 DATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN-T 667
D T+ P +PL ++EE+G P + + + +YSP DN+ + YP ++V +
Sbjct: 625 DVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNV-RAQEYPNIMVQCGLHDP 683
Query: 668 RFGVWEAAKWVARVRESTIYDPKRPILLNLTTDI---VEENRYLQCKESALETAFLIKMM 724
R WE AKWV+++RE + ILLN+ + ++RY KESA++ AF+ K +
Sbjct: 684 RVAYWEPAKWVSKLRECKTDN--NEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHL 741
Query: 725 E 725
+
Sbjct: 742 K 742
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 426 bits (1097), Expect = e-140
Identities = 148/730 (20%), Positives = 265/730 (36%), Gaps = 113/730 (15%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
+M + +A ++ + L + + + P R +Y R + K+ +L
Sbjct: 38 WMTAQNAHAREALAKFP-GREALAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAIL 96
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
R + + E+ LLD N ++ G VS D K
Sbjct: 97 YWR-----------QGESGQ---------EKVLLDPNGWSK--DGTVSLGTWAVSWDGKK 134
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKP--QAVRVSNIAWAKDGQALIYV--------V 185
+A+ D L V +++SG + + + W D + Y
Sbjct: 135 VAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194
Query: 186 TDQNKRPYQIYCSIIGS-TDEDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVF 243
D+ I +G+ +D ++ E + ++ ++D ++ V+ S
Sbjct: 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDV 254
Query: 244 LINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP 303
L+ + G + V + Y+ TD + A +
Sbjct: 255 YW-KRPGEKDFRLLVKGVGAKY-EVHAWKDRFYVLTD-----EGAPRQRVFEVDPAKPAR 307
Query: 304 SRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPH 363
+ +W+ + +D + V H++L + T + V LK
Sbjct: 308 A-SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVR-----------VATLKGKPVR 355
Query: 364 FLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERT 423
+ LP + + +S P + +S GK + +
Sbjct: 356 TVQLPGVGA--ASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKV------- 406
Query: 424 RILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTII 483
++ + + Y EQ S DG VP+ ++
Sbjct: 407 -----------------------DVPMNPEQ--------YQVEQVFYASKDGTKVPMFVV 435
Query: 484 YSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543
+ K++ P LL+G+G + ++ +RS + LD G V A A++RGGG GK WH
Sbjct: 436 HRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHD 495
Query: 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 603
GR KK N DF + A +L++++ + +LA +G S GGLLV AA+ P+L+ AVV
Sbjct: 496 AGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVC 555
Query: 604 EVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTS 663
VP LD L+ +Y G +DF + YSPY +++ DV YPA+L+ +
Sbjct: 556 AVPLLDMVRYHLFGSGRTWIPEY---GTAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMA 612
Query: 664 SFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--------RYLQCKESA 714
+ + R A K+VA V+ S LL +E N + S
Sbjct: 613 ADHDDRVDPMHARKFVAAVQNSPGNP--ATALLR-----IEANAGHGGADQVAKAIESSV 665
Query: 715 LETAFLIKMM 724
+FL +++
Sbjct: 666 DLYSFLFQVL 675
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 | Back alignment and structure |
|---|
Score = 413 bits (1065), Expect = e-135
Identities = 143/732 (19%), Positives = 266/732 (36%), Gaps = 117/732 (15%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
+++ + + ++ ++ ++ ++A+ + P R G + Y+ + + + VL
Sbjct: 47 WVKAQNAVTQDYLAQIP-YRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVL 105
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
R+ E LD N + G + S D +
Sbjct: 106 WRQQEGKPAEV---------------------FLDPNTLSP--DGTTALDQLSFSRDGRI 142
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQALIYVVTD------- 187
LAY++ +D+ + + ++ S P + V+ S I+W + Y D
Sbjct: 143 LAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSEL 201
Query: 188 -QNKRPYQIYCSIIG-STDEDALLLEESNEN--VYVNIRHTKDFHFVCVHTFSTTSS-KV 242
+++Y +G + ++D L+ YV T+D F+ + ++TS ++
Sbjct: 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261
Query: 243 FLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASF 302
++ + + + L + +V++ LYL T+ +A N L+
Sbjct: 262 YVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNR-----DAPNRRLVTVDAANPG 316
Query: 303 PSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHP 362
P+ W + + Q V V ++ T R+ +
Sbjct: 317 PAH-WRDLIPERQQ--VLTVHSGSGYLFAEYMVDATARVE-----------QFDYEGKRV 362
Query: 363 HFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRER 422
+ LP S V G N + + F + P + ++ G ++ +
Sbjct: 363 REVALPGLGS--VSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRAS------ 414
Query: 423 TRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTI 482
++ Y EQ S DG VPL I
Sbjct: 415 ------------------------AAPFKPED--------YVSEQRFYQSKDGTRVPLII 442
Query: 483 IYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542
Y K + NP +L+G+G + L + + + LD G V A A++RGGG G+ WH
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWH 502
Query: 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602
G + K N DFI+ A +L + + +LA G S GGLLV A + PDL R
Sbjct: 503 LAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVA- 561
Query: 603 LEVPFLDATNTLLYPILPLIAADYEEFGYPGDI-DDFHAIRNYSPYDNIQKDVLYPAVLV 661
+P + + L Y ++G D F ++ YSP N++ V YP+ +V
Sbjct: 562 --LPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMV 619
Query: 662 TSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--------RYLQCKE 712
T++ + R + K+ A ++ P L+ +E N ++
Sbjct: 620 TTADHDDRVVPAHSFKFAATLQADNAGP--HPQLIR-----IETNAGHGAGTPVAKLIEQ 672
Query: 713 SALETAFLIKMM 724
SA AF + M
Sbjct: 673 SADIYAFTLYEM 684
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 391 bits (1007), Expect = e-126
Identities = 133/748 (17%), Positives = 259/748 (34%), Gaps = 124/748 (16%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
++E + K + ++ + M + + + G +Y G Q +
Sbjct: 42 FVEAQNKITVPFLEQCP-IRGLYKERMTELYDYPKYSCHFKKGKRYFYFY-NTGLQNQRV 99
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
SL E + LD N ++ G S D ++
Sbjct: 100 LYVQDSLEGE-------------------ARVFLDPNILSD--DGTVALRGYAFSEDGEY 138
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQALIYVVTDQNK---- 190
AY + +D+ T+ ++ + V+ S +AW DG+ + Y Q
Sbjct: 139 FAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSD 198
Query: 191 -------RPYQIYCSIIGS-TDEDALLLEESNENVY-VNIRHTKDFHFVCVHTFSTTS-- 239
++Y ++G+ ED L E +E + + D +V +
Sbjct: 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV 258
Query: 240 SKVFLINAADPFSGLTLIWECEGLA------HCIVEHHEGFLYLFTDAAKEGQEADNHYL 293
++++ + +G+T I + L + V + T+ + + N+ L
Sbjct: 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTN-----RHSPNYRL 313
Query: 294 LRCPVDASFPSRTWESVFIDDQGLVVEDVD-FCKTHMALILREGRTYRLCSVSLPLPAGK 352
+ S+ W+ + + + V+E V + L L
Sbjct: 314 INIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ---------- 362
Query: 353 GVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNI 412
+ L + + S V G + + + + +S + P + DL+ +
Sbjct: 363 -LHDLATGALLKIFPLEVGS--VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEP 419
Query: 413 IQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPS 472
+ V D+ + Y Q PS
Sbjct: 420 RVFR---------------------------EVTVKGIDASD--------YQTVQIFYPS 444
Query: 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR-GWVVAFADV 531
DG +P+ I++ K + +P L+G+G + + + + G V+A A++
Sbjct: 445 KDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANI 504
Query: 532 RGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAI 591
RGGG G+ WH G K N DF A +LI++ +L G S GGLLVA
Sbjct: 505 RGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 592 NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ 651
N PDLF V+ +V +D L + + A ++G F + YSP N++
Sbjct: 565 NQRPDLFGCVIAQVGVMDM---LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVK 621
Query: 652 K----DVLYPAVLVTSSFN-TRFGVWEAAKWVARVRESTIYDPK--RPILLNLTTDIVEE 704
D+ YP++L+ ++ + R + K++A ++ K P+L++ V+
Sbjct: 622 LPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIH-----VDT 676
Query: 705 N--------RYLQCKESALETAFLIKMM 724
+E + AF+ + +
Sbjct: 677 KAGHGAGKPTAKVIEEVSDMFAFIARCL 704
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-124
Identities = 148/733 (20%), Positives = 255/733 (34%), Gaps = 116/733 (15%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
+++ + Y A + ++ L+ M + + +E P R G ++Y L
Sbjct: 77 WVQAQSAYTAAYLKQLP-ERAALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQL 135
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAE----RFGGYAYEELSEVSP 131
R PA T + LLD N A+ +A S
Sbjct: 136 LVR-------------PADAPVGTK----GRVLLDPNTWAKDGATALDAWA------ASD 172
Query: 132 DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-QAVRVSNIAWAKDGQALIYVVTDQNK 190
D + LAY++ D +D+ T+ + G + + V+ S +AW + L + +
Sbjct: 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKE 232
Query: 191 --------RPYQIYCSIIGS-TDEDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTS- 239
++ +G+ D + + D +V + + T
Sbjct: 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292
Query: 240 -SKVFLINAADPFSG-LTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCP 297
+ V + + G +T + V+ L+ + A ++R
Sbjct: 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSG-----DGAPLKKIVRVD 347
Query: 298 VDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHL 357
+ + ++ + + +E V + ++ L
Sbjct: 348 LSG--STPRFD-TVVPESKDNLESVGIAGNRLFASYIHDAKSQVL-----------AFDL 393
Query: 358 KELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQN 417
+ LP S G + + SS P V+ D + K +
Sbjct: 394 DGKPAGAVSLPGIGS--ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPV- 450
Query: 418 MLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGIS 477
L D + + EQ PS DG
Sbjct: 451 -----------------------------HLTFDPAD--------FRVEQVFYPSKDGTK 473
Query: 478 VPLTIIYSPKYKKE--NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG 535
VP+ I+ +K+ P LL+G+G + L + + + +D G A A++RGGG
Sbjct: 474 VPMFIVR----RKDAKGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGG 529
Query: 536 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP 595
G WH GRR KK N DFI+ +LI + H LA G S GGLL+ A N P
Sbjct: 530 EYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRP 589
Query: 596 DLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVL 655
DLF A V +D L + +++GYP D+ +R YSPY N++ V
Sbjct: 590 DLFAAASPAVGVMD---MLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSGVD 646
Query: 656 YPAVLVTSSFN-TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDI---VEENRYLQCK 711
YPA+LVT++ R + K+ A ++ + I +P L+ + T + Q +
Sbjct: 647 YPAILVTTADTDDRVVPGHSFKYTAALQTAAIGP--KPHLIRIETRAGHGSGKPIDKQIE 704
Query: 712 ESALETAFLIKMM 724
E+A AFL
Sbjct: 705 ETADVQAFLAHFT 717
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 30/275 (10%)
Query: 426 LYGTASSAT-----ISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPL 480
G A+S + L+ +G + D + + + + DG +
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA--RTIGARHTDPVDPAYYPEPQIRTFTAPDGREIH- 405
Query: 481 TIIYSPKYKKENQNPG-------LLHG--HGAYGELLDKRWRSELKSLLDRGWVVAFADV 531
IY P + HG ++ RG VA +
Sbjct: 406 AHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVP----AVLDLDVAYFTSRGIGVADVNY 461
Query: 532 RGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAI 591
G G G+ + R + ++D + A L E+ +LA G SAGG A+++
Sbjct: 462 GGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSL 521
Query: 592 NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPY---D 648
D++ + P LD + Y +F + R+ +P D
Sbjct: 522 -VSTDVYACGTVLYPVLDLL-GWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRAD 579
Query: 649 NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRE 683
++ L L+ + + +++ V
Sbjct: 580 RVRVPFL----LLQGLEDPVCPPEQCDRFLEAVAG 610
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 6e-15
Identities = 76/540 (14%), Positives = 150/540 (27%), Gaps = 108/540 (20%)
Query: 130 SPDHKFLAYTMYDKDNDYFTLSVRNLNSGA---LCSKPQAVRVSNIAWAKDGQALIYVVT 186
+ + K + L N + + +R+ ++ G+A+++
Sbjct: 72 YGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRI--LSGVDTGEAVVFTGA 129
Query: 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 246
++ ++ L +IR + F +F N
Sbjct: 130 TED----RVA-LYALDGGGLRELARLPGFGFVSDIRGD---LIAGLGFFGGGRVSLFTSN 181
Query: 247 AADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRT 306
+ GL + EG + + +R
Sbjct: 182 LSS--GGLRVFDSGEGSFSSASISPGMKVTAGLET----------------------ARE 217
Query: 307 WESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLP 366
V +D + VED++ L ++ +YR +++ G + +
Sbjct: 218 ARLVTVDPRDGSVEDLE-------LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSA 270
Query: 367 LPKYVSQI-VPGPNYDYYSS---TMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRER 422
+ ++ P N+ + + +S P +V
Sbjct: 271 VFIDGERVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSG---------------- 314
Query: 423 TRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTI 482
E + + V S DG VP T
Sbjct: 315 ------------------------EPLLEGGLPEDLRRSIAGSRLVWVESFDGSRVP-TY 349
Query: 483 IYSPKYKKENQNPGLL--HG--HGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG 538
+ P ++ HG W + SL G+ V + RG G G
Sbjct: 350 VLESGRAPTPG-PTVVLVHGGPFAEDS----DSWDTFAASLAAAGFHVVMPNYRGSTGYG 404
Query: 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598
++W ++D + AR+ E + +L GYS GG + A+ P LF
Sbjct: 405 EEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLF 462
Query: 599 RAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPY---DNIQKDVL 655
+A V +D +Y + ++ E G + + SP D I++ +
Sbjct: 463 KAGVAGASVVDW--EEMYELSDAAFRNFIEQLTGGSREIMRSR---SPINHVDRIKEPLA 517
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 5/173 (2%)
Query: 434 TISLNAKSGESVNELKSDSDNLWNDLSEF-YSCEQYDVPSHDGISVPLTIIYSPKYKKEN 492
++ + + + L+ D+ L L ++ D + +I P + K
Sbjct: 442 YTLHSSVNDKGLRVLE-DNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK 500
Query: 493 QNPGLLHGHGA-YGELLDKRWRSELKS--LLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549
+ P LL + + D +R + +VA D RG G G K H R
Sbjct: 501 KYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRL 560
Query: 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602
++D I AR + V ++A WG+S GG + + + +F+ +
Sbjct: 561 GTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGI 613
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 31/172 (18%), Positives = 71/172 (41%), Gaps = 5/172 (2%)
Query: 434 TISLNAKSGESVNELKSDSDNLWNDLSEFYSCE-QYDVPSHDGISVPLTIIYSPKYKKEN 492
N + + +L+ ++++ +++ + +Y D ++P+ I+ +
Sbjct: 436 VTVHNTTDKKKMFDLE-TNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTT 494
Query: 493 QNPGLLHGHGA-YGELLDKRWRSELKSLL--DRGWVVAFADVRGGGGGGKKWHHDGRRTK 549
P LL G + + +++ ++++ G VV D RG G G K H+ RR
Sbjct: 495 HYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 554
Query: 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAV 601
L KD + R +++++ + ++A +G GG L + +
Sbjct: 555 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQT 606
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 434 TISLNAKSGESVNELKSDSDNLWNDLSEFY-SCEQYDVPSHDGISVPLTIIYSPKYKKEN 492
+ + ++ + + L+ ++ L N L E+ D I++ +I P++ +
Sbjct: 436 STLHDGRTDQEIKILE-ENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDRSK 494
Query: 493 QNPGLLHGHGA-YGELLDKRWRSELKS--LLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549
+ P L+ +G + + + S G V+A D RG G K + R
Sbjct: 495 KYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKL 554
Query: 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602
+ ++D I+ R IE + E ++A WG+S GG + + A+ LF+ +
Sbjct: 555 GVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGI 607
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 44/206 (21%), Positives = 63/206 (30%), Gaps = 29/206 (14%)
Query: 465 CEQYDV--PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 522
E YD+ G + PK E ++P L+ HG + ++ + +
Sbjct: 80 AECYDLYFTGVRGARIH-AKYIKPK--TEGKHPALIRFHGYSS---NSGDWNDKLNYVAA 133
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKK----------------LNSIKDFISCARFLIE 566
G+ V DVRG GG + T + D A ++
Sbjct: 134 GFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMN 193
Query: 567 KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIA--- 623
V E ++ G S GG L A P R VV E PFL + L A
Sbjct: 194 MPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVSEYPFLSDYKRVWDLDLAKNAYQE 252
Query: 624 -ADYEEFGYPGDIDDFHAIRNYSPYD 648
DY P + D
Sbjct: 253 ITDYFRLFDPRHERENEVFTKLGYID 278
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 30/216 (13%)
Query: 465 CEQYDV--PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 522
+ Y + S + P KE +P ++ HG Y D E+ +
Sbjct: 54 VKVYRLTYKSFGNARIT-GWYAVPD--KEGPHPAIVKYHG-YNASYDGEI-HEMVNWALH 108
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKK--------------LNSIKDFISCARFLIEKE 568
G+ VRG D + + +
Sbjct: 109 GYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFD 168
Query: 569 IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL----DATNTLLYPILPLIAA 624
V E ++ G S GG L AA +A V + P+L A + L I +
Sbjct: 169 EVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINS 227
Query: 625 DYEEFGYPGDIDD-FHAIRNYSPY---DNIQKDVLY 656
+ G P + + D ++ VL
Sbjct: 228 FFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLM 263
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 33/164 (20%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 554
PG+L HG +G + + G + D+RG G R ++
Sbjct: 29 PGVLFVHG-WGGSQH-HSLVRAREAVGLGCICMTFDLRGHEGYASMRQSVTRA----QNL 82
Query: 555 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614
D + L V H +A G S GG L A P + L P L
Sbjct: 83 DDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERPV--EWLALRSPALYKDAHW 140
Query: 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPY---DNIQKDVL 655
P + L + A + + DVL
Sbjct: 141 DQPKVSL----NADPDLMDYRRRALAPGDNLALAACAQYKGDVL 180
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 16/196 (8%)
Query: 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 522
E++++ DGI +P+ + P+ + +L G + E + +LDR
Sbjct: 125 PPAERHELV-VDGIPMPV-YVRIPEGPGPHPAVIMLGGLESTKEESFQMENL----VLDR 178
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSA 582
G A D G G + G + K + L + E ++ + G S
Sbjct: 179 GMATATFDGPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDAIGVLGRSL 232
Query: 583 GGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIR 642
GG + C P A + F D L L + Y + H
Sbjct: 233 GGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHA 291
Query: 643 NYSPY---DNIQKDVL 655
I
Sbjct: 292 ALETRDVLSQIACPTY 307
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 39/270 (14%), Positives = 66/270 (24%), Gaps = 47/270 (17%)
Query: 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG-------AYGELLDKRWRSELKSLL 520
Y S DG + + + Q + + HG +K +
Sbjct: 48 YKTQSPDGNLTIASGLVAMPIHPVGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGN 107
Query: 521 DRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIVKEHKLAGWG 579
G++ D G G H + +S D + A+ KL G
Sbjct: 108 SAGYMTVMPDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAG 167
Query: 580 YSAGGLLVAAAINCCPDL-----FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGD 634
YS GG AV T+ + +L Y
Sbjct: 168 YSEGGFSTIVMFEMLAKEYPDLPVSAVAPGSAPYGWEETMHFVMLEPGPRA---TAYLAY 224
Query: 635 IDDFHAIRNYSPYDNIQKDVLYPA---------------------------VLVTSSFNT 667
F++++ Y Y + ++ P ++ F+
Sbjct: 225 F--FYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLIFQPKFSN 282
Query: 668 RFGVWEAAKWVARVRESTIYD--PKRPILL 695
YD P P+LL
Sbjct: 283 GIISKTDRNTEILKINFNHYDFKPTAPLLL 312
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 434 TISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDG-ISVPLTIIYSPKYKKEN 492
+++ S L++ + + + E + + DG + + +
Sbjct: 427 KVTVTNIGKGSHTLLEAKNPDTGYAMPEI---RTGTIMAADGQTPLYYKLTMPLHFDPAK 483
Query: 493 QNPGLLHGHGA-YGELLDKRWRSELK----SLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547
+ P +++ +G + +L+ K WRS + + +G+ V D RG G + R
Sbjct: 484 KYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHR 543
Query: 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRA 600
+ D + FL + V ++ G+S GG + + D+F+
Sbjct: 544 RLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKV 596
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 29/207 (14%)
Query: 465 CEQYDV--PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 522
E YDV + G + + PK ++E P ++ G G + + +
Sbjct: 66 VEAYDVTFSGYRGQRIK-GWLLVPKLEEEKL-PCVVQYIGYNG---GRGFPHDWLFWPSM 120
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNS---------------------IKDFISCA 561
G++ D RG G G K ++ D +
Sbjct: 121 GYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAV 180
Query: 562 RFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPL 621
V + ++ G S GG + A +A++ +VPFL + +
Sbjct: 181 EAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK-AKALLCDVPFLCHFRRAVQLVDTH 239
Query: 622 IAADYEEFGYPGDIDDFHAIRNYSPYD 648
A+ F + R S +D
Sbjct: 240 PYAEITNFLKTHRDKEEIVFRTLSYFD 266
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 12/179 (6%)
Query: 434 TISLNAKSGESVNELK----SDSDNLWNDLSEFYS-CEQYDVPSHDG-ISVPLTIIYSPK 487
I L +GE + L +D + + E E + + DG + ++I
Sbjct: 451 QIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAG 510
Query: 488 YKKENQNPGLLHGHGA-YGELLDKRWRSELKSLL-----DRGWVVAFADVRGGGGGGKKW 541
+ + P ++ +G + + W L +G+VV D RG G+ +
Sbjct: 511 FDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDF 570
Query: 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRA 600
+ + D + +L ++ V ++ G+S GG + + D +
Sbjct: 571 GGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYAC 629
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 2/114 (1%)
Query: 497 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKD 556
HG G R R + L G D+ R
Sbjct: 40 FAHGSG--SSRYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLLASR 97
Query: 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDA 610
+ +L + K+ +G S GG A P+ +AVV D
Sbjct: 98 LVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDL 151
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 42/266 (15%), Positives = 86/266 (32%), Gaps = 26/266 (9%)
Query: 370 YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGT 429
Y + G ++ +++ ++ + D I+ N L R ++ Y
Sbjct: 62 YANN-SGGLSFSIFNNRGKYVVLELSTEDL--------HSNTIVFGPNFLNTRMKLDYIV 112
Query: 430 ASSATI-SLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKY 488
+ I ++ E ++D +L D +F + D G+ +P ++ PK
Sbjct: 113 SQLVPIFDVDGNEVEPFTSKQTDEKHLIID--DFLAFTFKD--PETGVEIP-YRLFVPKD 167
Query: 489 KKENQNPGL---LHGHGAYGELLDKRWRSELKSLL--------DRGWVVAFADVRGGGGG 537
++ L LHG G G + +++ V
Sbjct: 168 VNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSW 227
Query: 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597
+ + I R L+++ + E+++ G S GG AI P+L
Sbjct: 228 STLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPEL 287
Query: 598 FRAVVLEVPFLDATNTLLYPILPLIA 623
F A + D + +P+
Sbjct: 288 FAAAIPICGGGDVSKVERIKDIPIWV 313
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 25/186 (13%)
Query: 484 YSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543
PG++ G G LL+ +R+ L L G+ +
Sbjct: 148 TLFLPPGPGPFPGIIDIFGIGGGLLE--YRASL--LAGHGFATLALAYYNFEDLPNNMDN 203
Query: 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 603
++ F ++++ VK + G S G + + + ++ V +
Sbjct: 204 IS--------LEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSI 255
Query: 604 EVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNY-------------SPYDNI 650
+ + Y + Y+ I + P +
Sbjct: 256 NGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKA 315
Query: 651 QKDVLY 656
Q +L
Sbjct: 316 QGPILL 321
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 95/658 (14%), Positives = 189/658 (28%), Gaps = 196/658 (29%)
Query: 108 LLDYNQE-AERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA 166
LL +E ++F EE+ ++KFL + + ++ R Q
Sbjct: 71 LLSKQEEMVQKF----VEEVLR--INYKFLMSPIKTEQRQP-SMMTRMYIE-------QR 116
Query: 167 VRVSNIAWAKDGQALI-YVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRH-- 223
R+ N D Q Y V+ R Q Y + ALL +NV +
Sbjct: 117 DRLYN-----DNQVFAKYNVS----RL-QPYLKL-----RQALLELRPAKNVLI---DGV 158
Query: 224 ------------TKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHH 271
+ C F K+F +N + S T++ + L + I +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 272 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFI-DD--QGLVVEDVDF-CKT 327
+ K + L R + + + + + CK
Sbjct: 214 TS-RSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 328 HMALILREGRTYRLCSVSLPLPAGK-GVVHLKELHPHFLP-----------------LPK 369
L+ T R V+ L A + L P LP+
Sbjct: 269 ---LL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 370 YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGT 429
V P +S ++ +++ D ++ W + +
Sbjct: 321 EVLTTNP------------RRLS--IIAESIRDGLATWDNWKHVNCDKL----------- 355
Query: 430 ASSATISLNAKSGESVNELKSDSD-NLWNDLSEFYSCEQYDVPSHDGISVP---LTIIYS 485
+ I S+N L+ +++ LS F +P L++I+
Sbjct: 356 --TTIIES------SLNVLEPAEYRKMFDRLSVF----PPSAH------IPTILLSLIW- 396
Query: 486 PKYKKENQNPGL----LHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541
+ + + LH + L++K+ + S+ + +++
Sbjct: 397 --FDVIKSDVMVVVNKLHKYS----LVEKQPKESTISIPSI-----YLELKVKLENEYAL 445
Query: 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGW--GYSAGGL---LVAAAINCCPD 596
H + + + I K + + + Y + L
Sbjct: 446 H------RSI--------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 597 LFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLY 656
LFR V L+ FL+ + ++ ++ Y PY I +
Sbjct: 492 LFRMVFLDFRFLEQK---------IRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPK 540
Query: 657 PAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPI----LLNLTTDIVEE-NRYLQ 709
LV + + F + ++ E+ I + L+ I EE ++ +Q
Sbjct: 541 YERLVNAILD--F--------LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 5e-06
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 62/251 (24%)
Query: 7 KVAMRHMDMYMEQEEK---YAEAVMSDTERL--QSKLQSEMA-SRLAFELSTPPLRWGPW 60
+++ H M + +E + + + L + + S +A + W W
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 61 LYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPA---AGFD----FTSGKKIEQKLLDYNQ 113
+ C +L ++ E ++ PA FD F I LL
Sbjct: 348 KHVN-----------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---- 392
Query: 114 EAERF-GGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVS-- 170
++ V +K Y++ +K T+S+ ++ +
Sbjct: 393 --SLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 171 -----NIAWAKDGQALIYVVTDQNKRPYQIYCSI------IGSTDEDALLLEESNENVYV 219
NI D LI DQ Y Y I I + L V++
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQ----Y-FYSHIGHHLKNIEHPERMTLF-----RMVFL 498
Query: 220 NIRHTKDFHFV 230
DF F+
Sbjct: 499 ------DFRFL 503
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-06
Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 25/180 (13%)
Query: 489 KKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548
+ PG++ G G LL+ R L +G+ V K
Sbjct: 169 PEPGPFPGIVDMFGTGGGLLEYRASL----LAGKGFAVMALAYYNYEDLPKTMETLH--- 221
Query: 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608
++ F +L+ VK + G S GG L + + + AVV+
Sbjct: 222 -----LEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVA 276
Query: 609 DATNTLLYPILPLIAADYE-------EFGYPGDIDDFHAIRNY------SPYDNIQKDVL 655
+ TL Y L + GY +D ++ P + + L
Sbjct: 277 NVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFL 336
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 25/209 (11%), Positives = 59/209 (28%), Gaps = 22/209 (10%)
Query: 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 522
Y +Q ++P + + ++ K + + G + + WR L
Sbjct: 166 YIIKQLEIP-FEKGKIT-AHLHLTNTDKPHPVVIVSAGLDSLQTDM---WRLFRDHLAKH 220
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSA 582
+ D+ G K+ + + + L V H++ G+
Sbjct: 221 DIAMLTVDMPSVGYS-SKYPLTE------DYSRLHQAVLNELFSIPYVDHHRVGLIGFRF 273
Query: 583 GGLLVAAAINCCPDLFRAVVLEVPFLDA--TNTLLYPILPLIAADY--EEFGYPGDIDDF 638
GG + + +A V+ + + +P + D G +D +
Sbjct: 274 GGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKS-VVDIY 332
Query: 639 HAIRNYSPYDNIQKDVLYPA-----VLVT 662
+ + + L +L
Sbjct: 333 SLSGQMAAWSLKVQGFLSSRKTKVPILAM 361
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 48/218 (22%)
Query: 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLL--HGHGAYGELLDKRWRSELK--- 517
Y E+++ ++ P++ K PG+L G G E L K
Sbjct: 85 YILEKWEFYPFPKSVSTF-LVLKPEHLKGAV-PGVLCIPGSGRTKEGLVGEPGICDKLTE 142
Query: 518 -----------SLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI------------ 554
+++ G+V D G +D + +
Sbjct: 143 DYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWL 202
Query: 555 ----KDFISCARFLIEKEIVKEHKLAGWGYSAGGL--LVAAAINCCPDLFRAVVLEVPFL 608
+ ++ + +++ ++ G+S G +V ++ A V
Sbjct: 203 GYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLD---KDIYAFVYNDFL- 258
Query: 609 DATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 646
+ + D E ++IR+ P
Sbjct: 259 ---CQTQERAVVMTKPDKENRRPFP-----NSIRHLIP 288
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 18/192 (9%)
Query: 425 ILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIY 484
++ S A + + G ++ + + LS + + GI++ +Y
Sbjct: 28 LVGCQTSPAATTSSNTGGTNMQLQLTQEWDKTFPLSAKVEHRKVTFANRYGITLA-ADLY 86
Query: 485 SPKYKKENQNPGLL--HGHGAYGELLDKRWRSEL--KSLLDRGWVVAFADVRGGG--GGG 538
PK + ++ P ++ GA K S L +++ +RG+V D G GG
Sbjct: 87 LPKNRGGDRLPAIVIGGPFGAV-----KEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQ 141
Query: 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598
+ + +DF + F+ V ++ G G + A+ +
Sbjct: 142 PRNVASPDI-----NTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRV- 195
Query: 599 RAVVLEVPFLDA 610
+AVV +
Sbjct: 196 KAVVTSTMYDMT 207
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 121 YAYEELSEVSPDHKFLAYT---MYDKDNDYFT-LSVRNLNSGALCSKPQAVRVSNIAWAK 176
+ LS+ + +AY KDN Y + + NL + A + + +
Sbjct: 12 AKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNA---RRFIENATMPRISP 68
Query: 177 DGQALIYVVTDQNKRPYQIY 196
DG+ + ++ ++ K+ +I+
Sbjct: 69 DGKKIAFMRANEEKKVSEIW 88
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* Length = 398 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 35/204 (17%), Positives = 55/204 (26%), Gaps = 41/204 (20%)
Query: 484 YSPKYKKENQNPG------LLHGHGAYGELLDKRWRSELKSLLDRGWV---VAFADVRGG 534
Y+ ++ LHG G + + + + + + V D
Sbjct: 38 YTSAERQRRSRTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNH 97
Query: 535 G----------GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGG 584
G G W R D + A + G+S GG
Sbjct: 98 GDSAVRNRGRLGTNFNWIDGAR---------DVLKIATCELGSIDSHPALNVVIGHSMGG 148
Query: 585 LLVAAAINCCPDLFRAVVLEVPFL------DATNTLLYPILPLIAADYEEFGYPGDIDDF 638
A P+LF ++L P + A L P P I + D F
Sbjct: 149 FQALACDVLQPNLFHLLILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHF 208
Query: 639 -------HAIRNYSPYDNIQKDVL 655
+RN S + N +L
Sbjct: 209 ANESEYVKYMRNGSFFTNAHSQIL 232
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 26/192 (13%), Positives = 48/192 (25%), Gaps = 23/192 (11%)
Query: 497 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGG--GGGKKWHHDGRRTKKL--N 552
LHG E + L +RG+++ D G G R +++
Sbjct: 29 ALHGLQGSKE----HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRV 84
Query: 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612
++ R E E L G S G + + +
Sbjct: 85 ALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAF--------- 135
Query: 613 TLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVW 672
I + D A+ P + P + + S + +
Sbjct: 136 -----IGSGFPMKLPQGQVVED-PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLA 189
Query: 673 EAAKWVARVRES 684
K + +R
Sbjct: 190 RMEKTLEALRPH 201
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 16/175 (9%)
Query: 475 GISVPLTIIYSPK-YKKENQNPG--LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADV 531
+ + +I P+ ++ E + G LLH + ++L G+ V
Sbjct: 2 AMGIRNSIFRKPQPFEYEGTDTGVVLLHAYTGSPN----DMNFMARALQRSGYGVYVPLF 57
Query: 532 RGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAI 591
G G + + + + + + K K+ +G S GG+ A+
Sbjct: 58 SGHG------TVEPLDILTKGNPDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKAL 111
Query: 592 NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 646
P + V P L + L+ L G D+ I Y P
Sbjct: 112 ETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNR---LAGKSDESTQILAYLP 163
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A Length = 397 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 8e-04
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 516 LKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIVKEHK 574
+ L +G+VV +D G G +H + ++ D + AR L + K
Sbjct: 110 VTRLASQGYVVVGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGK 169
Query: 575 LAGWGYSAGGLLVAA 589
+ GYS GG A
Sbjct: 170 VMLSGYSQGGHTAMA 184
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 726 | |||
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.92 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.91 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.91 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.89 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.88 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.88 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.88 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.88 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.88 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.88 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.87 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.86 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.86 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.86 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.86 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.85 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.85 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.85 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.85 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.85 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.85 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.84 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.84 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.84 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.84 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.84 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.84 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.84 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.84 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.83 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.83 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.83 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.83 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.83 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.83 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.83 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.82 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.82 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.81 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.81 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.81 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.81 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.81 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.8 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.8 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.8 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.8 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.79 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.79 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.78 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.78 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.78 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.78 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.78 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.77 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.77 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.77 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.77 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.77 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.76 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.76 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.76 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.74 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.74 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.74 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.73 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.73 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.73 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.73 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.73 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.72 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.72 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.72 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.72 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.72 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.72 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.71 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.71 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.71 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.71 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.71 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.7 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.7 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.7 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.7 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.69 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.69 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.68 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.68 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.67 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.66 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.66 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.65 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.65 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.65 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.64 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.64 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.64 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.63 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.63 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.63 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.63 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.63 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.63 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.62 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.62 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.62 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.62 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.61 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.61 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.6 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.6 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.59 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.59 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.59 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.59 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.59 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.59 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.58 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.58 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.58 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.58 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.58 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.58 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.57 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.57 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.57 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.57 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.57 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.57 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.57 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.56 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.56 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.56 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.55 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.55 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.55 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.55 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.55 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.54 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.54 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.54 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.54 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.53 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.52 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.52 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.52 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.52 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.51 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.51 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.5 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.5 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.5 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.5 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.5 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.49 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.49 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.49 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.48 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.48 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.48 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.47 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.47 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.46 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.46 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.46 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.46 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.46 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.46 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.45 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.45 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.45 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.44 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.44 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.44 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.44 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.44 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.43 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.43 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.41 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.41 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.4 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.4 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.4 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.4 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.39 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.38 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.38 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.38 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.38 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.37 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.37 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.36 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.35 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.35 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.35 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.34 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.02 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.33 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.33 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.32 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.31 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.3 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.3 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.3 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.3 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.24 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.23 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.21 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.2 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.2 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.19 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.19 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.18 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.17 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.17 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.17 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.15 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.12 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.05 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.05 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.04 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.02 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.02 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.0 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 98.98 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 98.98 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.96 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.94 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.92 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.9 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.89 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 98.89 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 98.89 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.88 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.87 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 98.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.84 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 98.83 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 98.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.79 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.77 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.77 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.76 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.73 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.71 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.71 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.71 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.68 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.68 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.66 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.64 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.63 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.62 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.61 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.61 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.6 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.6 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.59 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.58 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.57 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.56 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.55 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.54 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.53 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.5 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.5 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.48 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.47 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.47 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.46 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.46 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.46 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.43 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.41 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.4 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.38 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.37 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.36 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.36 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.34 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.34 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.34 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.33 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.31 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.29 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.29 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.29 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.28 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.24 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.23 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.23 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.23 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.22 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.22 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.2 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.19 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.19 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.18 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.18 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.17 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.17 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.16 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.16 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.14 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.14 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.13 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.13 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.12 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.11 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.07 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.06 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.06 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.06 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.04 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.02 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.99 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.99 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.94 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.93 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.93 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.92 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.9 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.89 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.88 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.87 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.86 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.84 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.84 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.83 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.83 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.82 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.82 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 97.82 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.81 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.81 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.76 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.76 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.74 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.74 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.73 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.72 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.71 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.71 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.7 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.7 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.69 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.68 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.68 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.67 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.65 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.63 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.63 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.63 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.62 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.62 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.61 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.61 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.61 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.6 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.6 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.59 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.59 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.58 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.58 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.58 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.57 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.56 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.55 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.54 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.54 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.53 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.53 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.52 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.5 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.49 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.48 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.47 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.45 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.43 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.42 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.42 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.42 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.4 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.4 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.38 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.38 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.36 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.36 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.35 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.34 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.34 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.3 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.29 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.27 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.23 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.23 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.21 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.21 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.17 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.15 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.14 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.09 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.05 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.03 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.01 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.0 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.98 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.96 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.95 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.95 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.92 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.91 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 96.89 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.89 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.85 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.85 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 96.83 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.82 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.8 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 96.75 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.74 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.72 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.7 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.67 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.65 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.63 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.61 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.6 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 96.6 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.51 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.44 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.31 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.31 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.3 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 96.24 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.23 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.19 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.06 | |
| 1ac5_A | 483 | KEX1(delta)P; carboxypeptidase, hydrolase, glycopr | 96.05 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 95.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.89 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 95.82 | |
| 4az3_A | 300 | Lysosomal protective protein 32 kDa chain; hydrola | 95.81 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 95.81 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 95.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.78 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.77 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.74 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.73 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.67 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 95.64 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 95.64 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.57 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.57 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 95.56 | |
| 1gxs_A | 270 | P-(S)-hydroxymandelonitrIle lyase chain A; inhibit | 95.48 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 95.45 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 95.26 | |
| 1tib_A | 269 | Lipase; hydrolase(carboxylic esterase); 1.84A {The | 95.2 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.2 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 95.18 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.17 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.07 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.07 | |
| 1cpy_A | 421 | Serine carboxypeptidase; hydrolase (carboxypeptida | 94.99 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 94.86 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 94.69 |
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-88 Score=794.13 Aligned_cols=653 Identities=24% Similarity=0.418 Sum_probs=553.4
Q ss_pred CCCCC--cccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEE
Q 004866 1 MSSLN--DKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRR 78 (726)
Q Consensus 1 ~~~~~--~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~ 78 (726)
|||.+ || ||++||+|||+||+++|+++++||++|++||+++++++++|+|.++|+|+||+|+.+|++|+++||+
T Consensus 71 l~d~~~~~~----~~~~~~~~~n~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~ 146 (751)
T 2xe4_A 71 MRDDDRKDP----AVIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRV 146 (751)
T ss_dssp GCCTTSCCH----HHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEE
T ss_pred ccCCCCCCH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEE
Confidence 67877 88 9999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCccccccCCCCCCCcccCCCCC--CcEEEeecccccccCCceEEeeceeeC-CCCCEEEEEEeCCCCcEEEEEEEEC
Q 004866 79 LVSLNEEFISHKSPAAGFDFTSGKK--IEQKLLDYNQEAERFGGYAYEELSEVS-PDHKFLAYTMYDKDNDYFTLSVRNL 155 (726)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lld~n~~~~~~~~~~~~~~~~~S-PDG~~la~~~~~~g~e~~~l~v~dl 155 (726)
+...+ ..+ .+++|||+|+++++++ ++.++.++|| |||++|||+.+..|+++++|+++|+
T Consensus 147 ~~~~~-----------------~~~~~~~~vlld~n~~a~~~~-~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl 208 (751)
T 2xe4_A 147 FTDKE-----------------PGDVAAEEVIIDVNQVAEGKA-FCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRI 208 (751)
T ss_dssp ETTSC-----------------TTCTTTCEEEEEHHHHTTTCS-CCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEET
T ss_pred cCCCC-----------------CCCCcCCEEEechhHhccCCC-eEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEEC
Confidence 75100 013 6799999999999876 8899999999 9999999999999999999999999
Q ss_pred CCC-ceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEE
Q 004866 156 NSG-ALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVH 233 (726)
Q Consensus 156 ~tg-~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~ 233 (726)
++| +.+.........+++|||||++|+|++.+...++.+||++++++++ .+++++++.+..++.++.|||||++|++.
T Consensus 209 ~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~ 288 (751)
T 2xe4_A 209 SDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIG 288 (751)
T ss_dssp TCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEE
T ss_pred CCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEE
Confidence 999 7544323334678999999999999988766667899999999987 67889887777788889999999999999
Q ss_pred EcCCCceEEEEEeCCCCCCCe--EEeeccCCceEEeee-ecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE-
Q 004866 234 TFSTTSSKVFLINAADPFSGL--TLIWECEGLAHCIVE-HHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES- 309 (726)
Q Consensus 234 ~~~~~~~~l~~~d~~~~~~~~--~~l~~~~~~~~~~~~-~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 309 (726)
+.+...++||++|++++..++ +.+.++..+..+.++ ++|+.|||++|.++. .+++|+.++++ .+ ..|+.
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a----~~~~L~~~d~~-~~--~~~~~~ 361 (751)
T 2xe4_A 289 SQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGA----VNHKLLIAPRG-QP--SDWSHV 361 (751)
T ss_dssp EECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTC----TTCEEEEEETT-ST--TCCCCE
T ss_pred ecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCC----CCcEEEEEcCC-Cc--ccceee
Confidence 987778999999998864456 777776666667676 779999999997611 26899999986 32 57888
Q ss_pred EeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccc-cccccCCCceeeeecCCCC--cCCCcE
Q 004866 310 VFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELH-PHFLPLPKYVSQIVPGPNY--DYYSST 386 (726)
Q Consensus 310 v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~--~~~~~~ 386 (726)
++++..+..+.++.+++++|++..+.+|..+|+++++....+ .+...+ ...+++|...+.+..+.+. +.+++.
T Consensus 362 li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~----~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 437 (751)
T 2xe4_A 362 LVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDG----VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPT 437 (751)
T ss_dssp EECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTS----CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSC
T ss_pred EECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccc----cccCCccceEECCCCceeEEEeccCcccCCCCCE
Confidence 888877778899999999999999999999999999621000 000011 2346666643332222233 567888
Q ss_pred EEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEE
Q 004866 387 MRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCE 466 (726)
Q Consensus 387 ~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (726)
++++++|+++|+++|.+|+.+++.+.|++++++.. ++ ...+.++
T Consensus 438 l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~-----------------------------~~-------~~~~~~~ 481 (751)
T 2xe4_A 438 FRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGG-----------------------------FD-------AANYKVE 481 (751)
T ss_dssp EEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTT-----------------------------CC-------GGGEEEE
T ss_pred EEEEEeCCCCCCEEEEEECCCCcEEEEeccccccC-----------------------------CC-------ccceEEE
Confidence 99999999999999999999999888876554210 12 3456789
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc-cc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH-DG 545 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~-~~ 545 (726)
++++++.||.+|++++++|++.+++++.|+||++|||++....+.|....+.|+++||+|+++|+||+|++|..|+. .+
T Consensus 482 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~ 561 (751)
T 2xe4_A 482 RRFATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGA 561 (751)
T ss_dssp EEEEECTTCCEEEEEEEEETTSCTTSCCCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTS
T ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhccc
Confidence 99999999999999999999876667899999999999988878888888999999999999999999999999999 88
Q ss_pred cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhh
Q 004866 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAAD 625 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~ 625 (726)
...++...++|++++++||++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+..++.....++....
T Consensus 562 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~ 641 (751)
T 2xe4_A 562 KYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGE 641 (751)
T ss_dssp SGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHHHH
T ss_pred cccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhhcccCcccchhh
Confidence 88888899999999999999999999999999999999999999999999999999999999999887766666766666
Q ss_pred hcccCCCCChhHHHHHHhcCcccccccCCCCC-eEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCC
Q 004866 626 YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP-AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIV 702 (726)
Q Consensus 626 ~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P-~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~ 702 (726)
+.++|+|.+++.++.+.++||+.++.+ +++| +|++||..|.+||++++.+++++|++++++ .+++++ ++++||+
T Consensus 642 ~~~~g~p~~~~~~~~~~~~sp~~~~~~-~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~gH~ 718 (751)
T 2xe4_A 642 WEEWGNPNEYKYYDYMLSYSPMDNVRA-QEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTD--NNEILLNIDMESGHF 718 (751)
T ss_dssp TTTTCCTTSHHHHHHHHHHCTGGGCCS-SCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCCS--CCCEEEEEETTCCSS
T ss_pred HHHcCCCCCHHHHHHHHhcChhhhhcc-CCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCCC--CceEEEEECCCCCCC
Confidence 777899877777888999999999997 8998 999999999999999999999999998764 256665 6999998
Q ss_pred CCc-hhhHHHHHHHHHHHHHHhhc
Q 004866 703 EEN-RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 703 ~~~-~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.. ..+.++..+.+++||.++|+
T Consensus 719 ~~~~~~~~~~~~~~~~~Fl~~~l~ 742 (751)
T 2xe4_A 719 SAKDRYKFWKESAIQQAFVCKHLK 742 (751)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCChhHHHHHHHHHHHHHHHHhC
Confidence 765 56778888899999999986
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-88 Score=784.70 Aligned_cols=632 Identities=22% Similarity=0.321 Sum_probs=539.9
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEEec
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRRLV 80 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~~ 80 (726)
|||.++| +|++||+|||+||+++|+++ +++++|++||++++++++.++|.++|+|+||+|+.++++|+++||+..
T Consensus 36 l~~~~~~----~~~~~~~~~n~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~ 110 (693)
T 3iuj_A 36 LEDDRSP----ETEAWVKAQNAVTQDYLAQI-PYRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE 110 (693)
T ss_dssp GGCTTSH----HHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHSCCCEECCCEEETTEEEEEEECSSCSSCEEEEECT
T ss_pred hcCCCCH----HHHHHHHHHHHHHHHHHccC-hhHHHHHHHHHHhhccccCCCCEEECCEEEEEEEcCCCceeEEEEeCC
Confidence 6888888 99999999999999999999 899999999999999999999999999999999999999999999653
Q ss_pred CCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce
Q 004866 81 SLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~ 160 (726)
. +++++|||+|+++++ + ++.+++++|||||++|||+.+..|+++++|+++|++||+.
T Consensus 111 ~---------------------~~~~vllD~n~la~~-~-~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~ 167 (693)
T 3iuj_A 111 G---------------------KPAEVFLDPNTLSPD-G-TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP 167 (693)
T ss_dssp T---------------------SCCEEEECGGGGSTT-S-CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE
T ss_pred C---------------------CCcEEEEehhhccCC-C-cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC
Confidence 1 567999999999988 3 7799999999999999999999999999999999999998
Q ss_pred ecccccc-ccceeEEecCCCEEEEEEecCC--------CCCceEEEEEcCCCC-ceeEEeeecC--CceEEEEEEcCCCc
Q 004866 161 CSKPQAV-RVSNIAWAKDGQALIYVVTDQN--------KRPYQIYCSIIGSTD-EDALLLEESN--ENVYVNIRHTKDFH 228 (726)
Q Consensus 161 ~~~~~~~-~~~~~~WspDg~~l~y~~~~~~--------~~~~~l~~~~l~t~~-~~~lv~~~~d--~~~~~~~~~s~Dg~ 228 (726)
+..+... ....++|| ||+.|+|++.+.. .++.+||+|++++++ ++++++++.+ ..+++++.+||||+
T Consensus 168 ~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~ 246 (693)
T 3iuj_A 168 LETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR 246 (693)
T ss_dssp EEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC
T ss_pred CccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC
Confidence 7765433 36789999 9999999988754 577899999999987 7788998766 45677899999999
Q ss_pred EEEEEEcCCCc-eEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCc
Q 004866 229 FVCVHTFSTTS-SKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW 307 (726)
Q Consensus 229 ~l~~~~~~~~~-~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 307 (726)
+|++.+..... ++||++|++++..+++.+..+.+...+.++++|+.|||++|.+.. +++|+.++++ ++....|
T Consensus 247 ~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~-----~~~l~~~d~~-~~~~~~~ 320 (693)
T 3iuj_A 247 FLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAP-----NRRLVTVDAA-NPGPAHW 320 (693)
T ss_dssp EEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCT-----TCEEEEEETT-SCCGGGC
T ss_pred EEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCC-----CCEEEEEeCC-CCCcccc
Confidence 99998876654 699999998876678888888777666788999999999997642 5899999998 6555679
Q ss_pred eEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEE
Q 004866 308 ESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTM 387 (726)
Q Consensus 308 ~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 387 (726)
+.++++..+. + ++++++++|++..+++|.++|++++++++. ...+++|.... + .+.+.+++++.+
T Consensus 321 ~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-----------~~~l~~p~~~~-~-~~~~~~~d~~~l 385 (693)
T 3iuj_A 321 RDLIPERQQV-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKR-----------VREVALPGLGS-V-SGFNGKHDDPAL 385 (693)
T ss_dssp EEEECCCSSC-E-EEEEETTEEEEEEEETTEEEEEEECTTSCE-----------EEEECCSSSSE-E-EECCCCTTCSCE
T ss_pred EEEecCCCCE-E-EEEEECCEEEEEEEECCeeEEEEEECCCCe-----------eEEeecCCCce-E-EeeecCCCCCEE
Confidence 9888776554 5 999999999999999999999999986321 13456665322 1 133456788999
Q ss_pred EEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEEE
Q 004866 388 RFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQ 467 (726)
Q Consensus 388 ~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (726)
++.++|+++|+++|.+|+++++.+.++.++... + +..+.+++
T Consensus 386 ~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~~~-------------------------------~-------~~~~~~~~ 427 (693)
T 3iuj_A 386 YFGFENYAQPPTLYRFEPKSGAISLYRASAAPF-------------------------------K-------PEDYVSEQ 427 (693)
T ss_dssp EEEEECSSSCCEEEEECTTTCCEEEEECCCSSC-------------------------------C-------GGGEEEEE
T ss_pred EEEecCCCCCCEEEEEECCCCeEEEEEeCCCCc-------------------------------C-------hhhCeeEE
Confidence 999999999999999999999888887654311 2 45678999
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
+++++.||.+|++++++|++...+++.|+||++|||++....+.|....+.|+++||+|+++|+||+|++|..|+..+..
T Consensus 428 ~~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 507 (693)
T 3iuj_A 428 RFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQ 507 (693)
T ss_dssp EEEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSG
T ss_pred EEEecCCCcEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhh
Confidence 99999999999999999998766788999999999999888889999899999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhc
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYE 627 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~ 627 (726)
.++.+.++|++++++||++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+..++. .+....+..
T Consensus 508 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~~~~~~~~~ 584 (693)
T 3iuj_A 508 QNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHT---FTAGTGWAY 584 (693)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGG---SGGGGGCHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhcc---CCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886542 233334667
Q ss_pred ccCCCCChhH-HHHHHhcCcccccccCCCCC-eEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCC
Q 004866 628 EFGYPGDIDD-FHAIRNYSPYDNIQKDVLYP-AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVE 703 (726)
Q Consensus 628 ~~g~~~~~~~-~~~~~~~sp~~~i~~~~~~P-~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~ 703 (726)
+||+|.+++. ++.+.++||++++.+.+++| +|++||..|.+||++++.+|+++|++++.. ..++.+ ++++||++
T Consensus 585 ~~g~p~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~gH~~ 662 (693)
T 3iuj_A 585 DYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAG--PHPQLIRIETNAGHGA 662 (693)
T ss_dssp HHCCTTSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCS--SSCEEEEEEC------
T ss_pred HcCCccCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCC--CCCEEEEEeCCCCCCC
Confidence 7899987776 88899999999998657898 889999999999999999999999998532 135555 89999998
Q ss_pred Cc-hhhHHHHHHHHHHHHHHhhc
Q 004866 704 EN-RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 704 ~~-~~~~~~~~~~~~~fl~~~l~ 725 (726)
.. ..+.++..+.+++||.++|+
T Consensus 663 ~~~~~~~~~~~~~~~~fl~~~l~ 685 (693)
T 3iuj_A 663 GTPVAKLIEQSADIYAFTLYEMG 685 (693)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHcC
Confidence 76 57888999999999999986
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-81 Score=728.85 Aligned_cols=636 Identities=19% Similarity=0.263 Sum_probs=534.7
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEEec
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRRLV 80 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~~ 80 (726)
|||.++| +|++||++||+||+++|+++ +++++|++||+++++.++.+.|.++|+|+||.++.+|+++.++||+..
T Consensus 31 l~~~~~~----~~~~~~~~en~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~ 105 (710)
T 2xdw_A 31 LEDPDSE----QTKAFVEAQNKITVPFLEQC-PIRGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDS 105 (710)
T ss_dssp GGCTTSH----HHHHHHHHHHHHHHHHHHHS-THHHHHHHHHHHHHCSCEECCCEEETTEEEEEEECSSCSSCEEEEESS
T ss_pred hcCCCCH----HHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHhhccccCCCCEEECCEEEEEEEcCCceEEEEEEEcC
Confidence 6788888 99999999999999999999 999999999999999999999999999999999999999999999864
Q ss_pred CCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce
Q 004866 81 SLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~ 160 (726)
.. +.+++|+|+|+++.++ ...+..++|||||++|||+.+..|++.++|+++|+++|+.
T Consensus 106 ~~--------------------~~~~~lld~~~l~~~~--~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~ 163 (710)
T 2xdw_A 106 LE--------------------GEARVFLDPNILSDDG--TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE 163 (710)
T ss_dssp TT--------------------SCCEEEECGGGGCTTS--CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred CC--------------------CCcEEEECHHHhccCC--CEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC
Confidence 32 5678999999999874 4478899999999999999999999999999999999998
Q ss_pred ecccc-ccccceeEEecCCCEEEEEEecCC-----------CCCceEEEEEcCCCC-ceeEEeeecC-CceEEEEEEcCC
Q 004866 161 CSKPQ-AVRVSNIAWAKDGQALIYVVTDQN-----------KRPYQIYCSIIGSTD-EDALLLEESN-ENVYVNIRHTKD 226 (726)
Q Consensus 161 ~~~~~-~~~~~~~~WspDg~~l~y~~~~~~-----------~~~~~l~~~~l~t~~-~~~lv~~~~d-~~~~~~~~~s~D 226 (726)
+.++. ...+..++|||||+.|+|++.+.. .++.+||++++++++ .+++++++.+ ..+..++.||||
T Consensus 164 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD 243 (710)
T 2xdw_A 164 LPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD 243 (710)
T ss_dssp EEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred CcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC
Confidence 77544 234678999999999999987654 446789999999987 5678887654 445678899999
Q ss_pred CcEEEEEEcCCC--ceEEEEEeCCC------CCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeC
Q 004866 227 FHFVCVHTFSTT--SSKVFLINAAD------PFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPV 298 (726)
Q Consensus 227 g~~l~~~~~~~~--~~~l~~~d~~~------~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~ 298 (726)
|++|++.+.+.. .++||++|+.+ +...++.+..+.....+.++++|+.||+.++.+.. +++|+.+++
T Consensus 244 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~-----~~~l~~~d~ 318 (710)
T 2xdw_A 244 GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-----NYRLINIDF 318 (710)
T ss_dssp SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCT-----TCEEEEEET
T ss_pred CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCC-----CCEEEEEeC
Confidence 999999887543 58999999976 43357778877777777789999999999986542 588999998
Q ss_pred CCCCCCCCceEEeecCCCceEEEEeee-CCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecC
Q 004866 299 DASFPSRTWESVFIDDQGLVVEDVDFC-KTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPG 377 (726)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 377 (726)
+ ++....|+.++++.....+.++.+. ++++++..+.+|..+|+++++.++. . ...+.+|..... +
T Consensus 319 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~-----~-----~~~l~~~~~~v~---~ 384 (710)
T 2xdw_A 319 T-DPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-----L-----LKIFPLEVGSVV---G 384 (710)
T ss_dssp T-SCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-----E-----EEEECCCSSEEE---E
T ss_pred C-CCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-----E-----EEecCCCCceEE---E
Confidence 7 4433468988877665678888888 7899999999999999999975432 1 123555533211 2
Q ss_pred CCCcCCCcEEEEEEccCCCCceEEEEECCCCe--EEEEEeeccccccccccccCcccccccccccccccccccccCCCCc
Q 004866 378 PNYDYYSSTMRFAISSPVMPDAVVDYDLSYGK--WNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNL 455 (726)
Q Consensus 378 ~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (726)
...+++++.++++++|+++|+++|.+|+.+++ .+.++++.++ + ++
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~----~--------------------------~~--- 431 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVK----G--------------------------ID--- 431 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCT----T--------------------------CC---
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccC----C--------------------------cC---
Confidence 23356788999999999999999999999988 7777765442 0 12
Q ss_pred cCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCC
Q 004866 456 WNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGG 534 (726)
Q Consensus 456 ~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~ 534 (726)
...+.++++++++.||.+|++++++|++...+++.|+||++|||++....+.|....+.|++ +||+|+++|+||+
T Consensus 432 ----~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~ 507 (710)
T 2xdw_A 432 ----ASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGG 507 (710)
T ss_dssp ----GGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTS
T ss_pred ----ccccEEEEEEEEcCCCCEEEEEEEecCCCCCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCC
Confidence 45678999999999999999999999987667789999999999998888889888888888 9999999999999
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 535 GGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 535 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
|++|..|+..+...++.+.++|+++++++|++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+..++
T Consensus 508 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~ 587 (710)
T 2xdw_A 508 GEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFH 587 (710)
T ss_dssp STTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGG
T ss_pred CCCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhcc
Confidence 99999999998888888899999999999999999999999999999999999999999999999999999999988654
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccc-----cCCCC-CeEEEEecCCCCcChHHHHHHHHHHHhc----
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ-----KDVLY-PAVLVTSSFNTRFGVWEAAKWVARVRES---- 684 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~-----~~~~~-P~lli~g~~D~~V~~~~~~~~~~~L~~~---- 684 (726)
.. .....+..+||+|.+++.++.+.++||+.++. + +++ |+|++||..|.+||++++.+++++|+++
T Consensus 588 ~~---~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~-~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~ 663 (710)
T 2xdw_A 588 KY---TIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD-IQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRS 663 (710)
T ss_dssp GS---TTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTT-CCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTS
T ss_pred cc---CCChhHHHhCCCCCCHHHHHHHHHhCcHhhhccccccc-CCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccc
Confidence 32 12233556789998778888999999999998 5 787 8888999999999999999999999987
Q ss_pred CCCCCCCcEEE--EcCCCCCCCc-hhhHHHHHHHHHHHHHHhhc
Q 004866 685 TIYDPKRPILL--NLTTDIVEEN-RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 685 ~~~~~~~~~~~--~~~~gH~~~~-~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.. ..++.+ ++++||++.. .....+..+.+++||.++|+
T Consensus 664 ~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 705 (710)
T 2xdw_A 664 RKQ--NNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705 (710)
T ss_dssp TTC--CSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCC--CcCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 110 134544 8999998766 56678889999999999986
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-81 Score=727.55 Aligned_cols=632 Identities=21% Similarity=0.308 Sum_probs=533.1
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEEec
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRRLV 80 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~~ 80 (726)
|||.++| +|++||+|||+||+++|+++ +++++|++||++++++++.++|.++|+|+||.++.+|++++++||+..
T Consensus 27 l~~~~~~----~~~~~~~~en~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~ 101 (695)
T 2bkl_A 27 LEDEKAP----EVQTWMTAQNAHAREALAKF-PGREALAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQG 101 (695)
T ss_dssp GGCTTSH----HHHHHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHSCCEECCCEEETTEEEEEEECTTCSSCEEEEEES
T ss_pred hcCCCCH----HHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHhhccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcC
Confidence 6888888 99999999999999999999 999999999999999999999999999999999999999999999875
Q ss_pred CCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce
Q 004866 81 SLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~ 160 (726)
.. +.+++|+|+|.+++++ ...+..++|||||++|||+.+..|++..+|+++|+++|+.
T Consensus 102 ~~--------------------~~~~~l~d~~~~a~~~--~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~ 159 (695)
T 2bkl_A 102 ES--------------------GQEKVLLDPNGWSKDG--TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW 159 (695)
T ss_dssp TT--------------------SCCEEEECGGGSSSSS--CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB
T ss_pred CC--------------------CCcEEEEchHHhccCC--CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC
Confidence 32 5679999999999875 4678999999999999999999999899999999999987
Q ss_pred e-ccccc-cccceeEEecCCCEEEEEEecCC--------CCCceEEEEEcCCCC-ceeEEeeecCC-ceEEEEEEcCCCc
Q 004866 161 C-SKPQA-VRVSNIAWAKDGQALIYVVTDQN--------KRPYQIYCSIIGSTD-EDALLLEESNE-NVYVNIRHTKDFH 228 (726)
Q Consensus 161 ~-~~~~~-~~~~~~~WspDg~~l~y~~~~~~--------~~~~~l~~~~l~t~~-~~~lv~~~~d~-~~~~~~~~s~Dg~ 228 (726)
+ ..... ..+..++|||||+.|+|++.+.. .++.+||++++++++ ++++++++.+. .++.++.|||||+
T Consensus 160 ~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~ 239 (695)
T 2bkl_A 160 SKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK 239 (695)
T ss_dssp CSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC
T ss_pred cCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC
Confidence 6 32222 23378999999999999987654 356789999999987 56788877654 3567889999999
Q ss_pred EEEEEEcCC-CceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCc
Q 004866 229 FVCVHTFST-TSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW 307 (726)
Q Consensus 229 ~l~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 307 (726)
+|++.+... ..++||+++..+ ++++.+..+.....+.++++|+ ||+.++.+. .+++|+.++++ ++....|
T Consensus 240 ~l~~~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~-----~~~~l~~~d~~-~~~~~~~ 310 (695)
T 2bkl_A 240 YLFVYILRGWSENDVYWKRPGE--KDFRLLVKGVGAKYEVHAWKDR-FYVLTDEGA-----PRQRVFEVDPA-KPARASW 310 (695)
T ss_dssp CEEEEEEETTTEEEEEEECTTC--SSCEEEEECSSCCEEEEEETTE-EEEEECTTC-----TTCEEEEEBTT-BCSGGGC
T ss_pred EEEEEEeCCCCceEEEEEcCCC--CceEEeecCCCceEEEEecCCc-EEEEECCCC-----CCCEEEEEeCC-CCCccCC
Confidence 999998776 678999998765 4677787777666666678898 999998653 25889999987 4444458
Q ss_pred eEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEE
Q 004866 308 ESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTM 387 (726)
Q Consensus 308 ~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 387 (726)
+.++++.++..+.++.++++++++..+.+|..+|++++++.+ ....+.+|.... + .+.+.+.+++.+
T Consensus 311 ~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~-----------~~~~l~~~~~~~-v-~~~~~s~d~~~l 377 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK-----------PVRTVQLPGVGA-A-SNLMGLEDLDDA 377 (695)
T ss_dssp EEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC-----------EEEECCCSSSSE-E-CCCBSCTTCSEE
T ss_pred eEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC-----------eeEEecCCCCeE-E-EEeecCCCCCEE
Confidence 999877667778889999999999999999999999987521 112355553221 1 133456688899
Q ss_pred EEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEEE
Q 004866 388 RFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQ 467 (726)
Q Consensus 388 ~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (726)
+++++|+++|+++|.+|+.+++.+.++.+++. ++ ...+.+++
T Consensus 378 ~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~~-------------------------------~~-------~~~~~~~~ 419 (695)
T 2bkl_A 378 YYVFTSFTTPRQIYKTSVSTGKSELWAKVDVP-------------------------------MN-------PEQYQVEQ 419 (695)
T ss_dssp EEEEEETTEEEEEEEEETTTCCEEEEEECCCS-------------------------------SC-------GGGEEEEE
T ss_pred EEEEcCCCCCCEEEEEECCCCcEEEEecCCCC-------------------------------CC-------HHHCeEEE
Confidence 99999999999999999999998877765431 12 34678999
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
+++++.||.+|++++++|++...+++.|+||++|||++....+.|....+.|+++||+|+++|+||+|++|..|+..+..
T Consensus 420 ~~~~~~dg~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~ 499 (695)
T 2bkl_A 420 VFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRL 499 (695)
T ss_dssp EEEECTTSCEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSG
T ss_pred EEEECCCCCEEEEEEEECCCCCCCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHh
Confidence 99999999999999999998766778999999999999888788888888899999999999999999999999999888
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhc
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYE 627 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~ 627 (726)
.++.+.++|+++++++|++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+.... ..++...+..
T Consensus 500 ~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~~~~~ 576 (695)
T 2bkl_A 500 DKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYH---LFGSGRTWIP 576 (695)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGG---GSTTGGGGHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhcc---ccCCCcchHH
Confidence 8888899999999999999999999999999999999999999999999999999999999987532 2344455667
Q ss_pred ccCCCCChhHHHHHHhcCcccccccCCC--CCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCC
Q 004866 628 EFGYPGDIDDFHAIRNYSPYDNIQKDVL--YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVE 703 (726)
Q Consensus 628 ~~g~~~~~~~~~~~~~~sp~~~i~~~~~--~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~ 703 (726)
+||+|.+++.++.+.++||+.++.+ ++ .|+|++||..|.+||++++.+++++|++++.. ..++.+ ++++||++
T Consensus 577 ~~g~~~~~~~~~~~~~~sp~~~~~~-~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~gH~~ 653 (695)
T 2bkl_A 577 EYGTAEKPEDFKTLHAYSPYHHVRP-DVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGN--PATALLRIEANAGHGG 653 (695)
T ss_dssp HHCCTTSHHHHHHHHHHCGGGCCCS-SCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTC--CSCEEEEEETTCBTTB
T ss_pred HhCCCCCHHHHHHHHhcChHhhhhh-cCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccC--CCCEEEEEeCCCCcCC
Confidence 7899988888889999999999986 44 58888999999999999999999999984321 134444 89999987
Q ss_pred Cc-hhhHHHHHHHHHHHHHHhhc
Q 004866 704 EN-RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 704 ~~-~~~~~~~~~~~~~fl~~~l~ 725 (726)
.. ..+..+..+.+++||.++|+
T Consensus 654 ~~~~~~~~~~~~~~~~fl~~~l~ 676 (695)
T 2bkl_A 654 ADQVAKAIESSVDLYSFLFQVLD 676 (695)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 65 66778888899999999986
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-79 Score=718.46 Aligned_cols=631 Identities=22% Similarity=0.284 Sum_probs=517.6
Q ss_pred CCCC--CcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEE
Q 004866 1 MSSL--NDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRR 78 (726)
Q Consensus 1 ~~~~--~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~ 78 (726)
|||. ++| +|++||++||+||+++|+++ +++++|++||++++++++.+.|+++|+|+||.++.+|+++.++||+
T Consensus 64 l~~~~~~~~----~~~~~~~aen~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~ 138 (741)
T 1yr2_A 64 LEADVRTDA----KVAAWVQAQSAYTAAYLKQL-PERAALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVR 138 (741)
T ss_dssp GGSCTTTCH----HHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHSCCCEECCCEEETTEEEEEEECSSCSSCEEEEE
T ss_pred HhCCCCCCH----HHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhcccccCCCEEECCEEEEEEEcCCCeEEEEEEE
Confidence 5665 677 99999999999999999999 9999999999999999999999999999999999999999999998
Q ss_pred ecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC
Q 004866 79 LVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG 158 (726)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg 158 (726)
+.... +.+.+++|||+|+++.++ ...+..++|||||++|||+++..|++.++|+++|+++|
T Consensus 139 ~~~~~-----------------~~~~~~~lld~~~l~~~~--~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg 199 (741)
T 1yr2_A 139 PADAP-----------------VGTKGRVLLDPNTWAKDG--ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG 199 (741)
T ss_dssp ETTSC-----------------TTCCCEEEECGGGCC------EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC
T ss_pred cCCcc-----------------CCCCCEEEECHHHhccCC--CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC
Confidence 75300 015679999999999873 46788999999999999999999999999999999999
Q ss_pred ceeccccc-cccceeEEecCCCEEEEEEecCCC---------CCceEEEEEcCCCC-ceeEEeeecCCc-eEEEEEEcCC
Q 004866 159 ALCSKPQA-VRVSNIAWAKDGQALIYVVTDQNK---------RPYQIYCSIIGSTD-EDALLLEESNEN-VYVNIRHTKD 226 (726)
Q Consensus 159 ~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~---------~~~~l~~~~l~t~~-~~~lv~~~~d~~-~~~~~~~s~D 226 (726)
+.+..... ..+..++|||| +.|+|++.+... ++.+||++++++++ .+++++++.+.. ++.++.||||
T Consensus 200 ~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD 278 (741)
T 1yr2_A 200 KPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD 278 (741)
T ss_dssp CEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred CCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC
Confidence 98765432 23468999999 999999876542 26789999999987 578888876643 5678999999
Q ss_pred CcEEEEEEcCC--CceEEEEEeCCCCCCC-eEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCC
Q 004866 227 FHFVCVHTFST--TSSKVFLINAADPFSG-LTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP 303 (726)
Q Consensus 227 g~~l~~~~~~~--~~~~l~~~d~~~~~~~-~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~ 303 (726)
|++|++.+.+. ..++||++|+.++..+ ++.+..+.+...+.++++|+.||+.++.+. .+++|+.++++ .+.
T Consensus 279 G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~-----~~~~l~~~d~~-~~~ 352 (741)
T 1yr2_A 279 GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGA-----PLKKIVRVDLS-GST 352 (741)
T ss_dssp SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTC-----TTCEEEEEECS-SSS
T ss_pred CCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCC-----CCCEEEEEeCC-CCc
Confidence 99999988765 4689999999874335 677877776666777899999999999754 25889999987 433
Q ss_pred CCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCC
Q 004866 304 SRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYY 383 (726)
Q Consensus 304 ~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 383 (726)
..|+.++++.. ..+.++.++++++++..+.+|..+|++++++.+ ....+.+|.... +. +.+.+++
T Consensus 353 -~~~~~l~~~~~-~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~-----------~~~~l~~~~~~~-v~-~~~~s~d 417 (741)
T 1yr2_A 353 -PRFDTVVPESK-DNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK-----------PAGAVSLPGIGS-AS-GLSGRPG 417 (741)
T ss_dssp -CEEEEEECCCS-SEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC-----------EEEECBCSSSCE-EE-EEECCBT
T ss_pred -cccEEEecCCC-CeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC-----------ceeeccCCCCeE-EE-EeecCCC
Confidence 57888886644 457888888999999999999999999987421 112455653221 11 2234567
Q ss_pred CcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCc
Q 004866 384 SSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFY 463 (726)
Q Consensus 384 ~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (726)
++.++++++|+++|+++|.+|+.+++.+.++++... ++ ...+
T Consensus 418 ~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~~~~-------------------------------~~-------~~~~ 459 (741)
T 1yr2_A 418 DRHAYLSFSSFTQPATVLALDPATAKTTPWEPVHLT-------------------------------FD-------PADF 459 (741)
T ss_dssp CSCEEEEEEETTEEEEEEEEETTTTEEEECSCCCCS-------------------------------SC-------GGGE
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCC-------------------------------CC-------hhHC
Confidence 889999999999999999999999987766543210 12 4567
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 543 (726)
.++++++++.||.+|++++++|++. +++.|+||++|||++....+.|....+.|+++||+|+++|+||+|++|..|+.
T Consensus 460 ~~~~~~~~~~dg~~i~~~~~~p~~~--~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~ 537 (741)
T 1yr2_A 460 RVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHD 537 (741)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTC--CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHH
T ss_pred EEEEEEEEcCCCCEEEEEEEecCCC--CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHH
Confidence 8999999999999999999999875 46789999999999988888898888899999999999999999999999999
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCCh
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIA 623 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~ 623 (726)
.+...++.+.++|+++++++|++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+.... ..+...
T Consensus 538 ~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~ 614 (741)
T 1yr2_A 538 AGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFD---QFTAGR 614 (741)
T ss_dssp TTSGGGTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGG---GSTTGG
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCcccccccc---CCCCCc
Confidence 88888888899999999999999999999999999999999999999999999999999999999987632 234444
Q ss_pred hhhcccCCCCChhHHHHHHhcCcccccccCCCC-CeEEEEecCCCCcChHHHHHHHHHHHh---cCCCCCCCcEEE--Ec
Q 004866 624 ADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLY-PAVLVTSSFNTRFGVWEAAKWVARVRE---STIYDPKRPILL--NL 697 (726)
Q Consensus 624 ~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~-P~lli~g~~D~~V~~~~~~~~~~~L~~---~~~~~~~~~~~~--~~ 697 (726)
.++.+||+|.+++.++.+.++||+.++...+++ |+|++||..|.+||++++.+++++|++ .+ .++.+ ++
T Consensus 615 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g-----~~~~l~~~~ 689 (741)
T 1yr2_A 615 YWVDDYGYPEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGP-----KPHLIRIET 689 (741)
T ss_dssp GGHHHHCCTTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCS-----SCEEEEEC-
T ss_pred hhHHHcCCCCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCC-----CCEEEEEeC
Confidence 566778999888888999999999999853675 888899999999999999999999999 55 34444 88
Q ss_pred CCCCCCCc-hhhHHHHHHHHHHHHHHhhc
Q 004866 698 TTDIVEEN-RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 698 ~~gH~~~~-~~~~~~~~~~~~~fl~~~l~ 725 (726)
++||++.. +....+..+.+++||.++|+
T Consensus 690 ~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 718 (741)
T 1yr2_A 690 RAGHGSGKPIDKQIEETADVQAFLAHFTG 718 (741)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99998766 56678888999999999986
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-76 Score=674.07 Aligned_cols=641 Identities=16% Similarity=0.216 Sum_probs=520.1
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccC-CCCCCeeECCeEEEEEecCCcceEEEEEEe
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFE-LSTPPLRWGPWLYYRRVEEGKQYLVLCRRL 79 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~-~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~ 79 (726)
|||.++| ++++|++|||++|.++|+.+ |.+++|.++|++.++.+ ..+.|.+.|+|+|+.++.+..++ .+||+.
T Consensus 27 LEd~~~~----~~~~wv~aqN~~T~~~l~~~-p~~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~~~~~-gl~rrt 100 (711)
T 4hvt_A 27 LEEAEGV----EALEWAKERTSKTEKALQAM-QEYKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDDKNPQ-GLWRRT 100 (711)
T ss_dssp GGSSSSS----HHHHHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCSSCSS-CEEEEE
T ss_pred hcCCCCH----HHHHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHhccccccCCcEEECCEEEEEEecCCCCc-EEEEEc
Confidence 5777888 99999999999999999998 88899999999999887 69999999999999999999988 777752
Q ss_pred cCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeecee-eCCCCCEEEEEEeCCCCcEEEEEEEECCCC
Q 004866 80 VSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSE-VSPDHKFLAYTMYDKDNDYFTLSVRNLNSG 158 (726)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~-~SPDG~~la~~~~~~g~e~~~l~v~dl~tg 158 (726)
.. ..+ ..+++.+|+|||+|++++..+-...+.+.. +||||+++||+.+.+|++...++++|++|+
T Consensus 101 ~~--~~~------------~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~ 166 (711)
T 4hvt_A 101 LV--DNY------------SKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKK 166 (711)
T ss_dssp EH--HHH------------TSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTT
T ss_pred cc--hhc------------ccCCCCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcC
Confidence 10 011 112367899999999997744126788887 999999999999999999999999999999
Q ss_pred ceeccccc-c---------ccceeEEecCCCEEEEEEec------CCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEE
Q 004866 159 ALCSKPQA-V---------RVSNIAWAKDGQALIYVVTD------QNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNI 221 (726)
Q Consensus 159 ~~~~~~~~-~---------~~~~~~WspDg~~l~y~~~~------~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~ 221 (726)
+.+..... . +++.++|. |++++||.+.. ..+.+.+||+|.+||+. ++++||++.+..+++++
T Consensus 167 ~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~ 245 (711)
T 4hvt_A 167 DFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSA 245 (711)
T ss_dssp EECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEE
T ss_pred CcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEE
Confidence 98865432 1 23566998 66788886422 22457899999999997 88999999888888888
Q ss_pred EEcCCCcE----EEEEEc-CCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCc--ccCCCCCCeEEE
Q 004866 222 RHTKDFHF----VCVHTF-STTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAA--KEGQEADNHYLL 294 (726)
Q Consensus 222 ~~s~Dg~~----l~~~~~-~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~--~~~~~~~~~~l~ 294 (726)
..++|+++ +++... +...+++|+++++.+.++++.+....+. . .+...++.||+.+..+ ..+....+++|+
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (711)
T 4hvt_A 246 GKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-T-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLV 323 (711)
T ss_dssp EESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC-E-EEEEETTEEEEECSSCEEETTEEECTTCEE
T ss_pred EEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc-e-EeeeECCEEEEEECcccccccccCCCCeEE
Confidence 89999985 555544 3345999999988665565555433332 2 2345688899977432 100112367899
Q ss_pred EeeCCCCCC-----CCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeeccccccc-ccCC
Q 004866 295 RCPVDASFP-----SRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHF-LPLP 368 (726)
Q Consensus 295 ~~~~~~~~~-----~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~p 368 (726)
.++++ ++. ...|+++++++.+..++++.+++++|++...++|.++|+++++.++. + .... +++|
T Consensus 324 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~----~-----~~~~~i~lp 393 (711)
T 4hvt_A 324 ALHFT-DLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQ----W-----TKPVVLKLP 393 (711)
T ss_dssp EEEGG-GGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTE----E-----CCCEEECCC
T ss_pred EEECC-cccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCc----e-----EEEeccCCC
Confidence 99987 532 45899988888899999999999999999999999999999875431 1 1123 6677
Q ss_pred Cc-eeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccc
Q 004866 369 KY-VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNE 447 (726)
Q Consensus 369 ~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (726)
.. ..++ .+.+.+++.++++++|+++|+++|.+|+. ++.+.++..+..
T Consensus 394 ~~~~~~~---~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~~~~---------------------------- 441 (711)
T 4hvt_A 394 YQNAIFG---MSSYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKALYS---------------------------- 441 (711)
T ss_dssp STTCEEE---EECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECCSSC----------------------------
T ss_pred CCeEEEE---EeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecCCcc----------------------------
Confidence 42 2221 12346788899999999999999999998 777777654321
Q ss_pred cccCCCCccCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHH-HHHHHCCcEE
Q 004866 448 LKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSEL-KSLLDRGWVV 526 (726)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v 526 (726)
++ ...+.++++++++.||.+|++++++|++.+++++.|+||++|||++....+.|.... +.|+++||+|
T Consensus 442 ---~~-------~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~V 511 (711)
T 4hvt_A 442 ---FD-------SENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVS 511 (711)
T ss_dssp ---CC-------GGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEE
T ss_pred ---cC-------cccCeeEEEEEECCCCeEEEEEEEecCCCCCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEE
Confidence 11 345689999999999999999999999876678899999999999998888888776 5999999999
Q ss_pred EEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 527 AFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 527 ~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
+++|+||+|++|..|+..+...++...++|++++++||++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|
T Consensus 512 v~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~p 591 (711)
T 4hvt_A 512 VLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVP 591 (711)
T ss_dssp EEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESC
T ss_pred EEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCC--CeEEEEecCCCCcChHHHHHHHHHH-Hh
Q 004866 607 FLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLY--PAVLVTSSFNTRFGVWEAAKWVARV-RE 683 (726)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~--P~lli~g~~D~~V~~~~~~~~~~~L-~~ 683 (726)
++|+..+.. ......+..+||+|.+++.++.+.++||+.++++ ++. |+|++||..|.+||+.++.+++++| ++
T Consensus 592 v~D~~~~~~---~~~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~-i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~ 667 (711)
T 4hvt_A 592 ILDMIRYKE---FGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSL-TQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQN 667 (711)
T ss_dssp CCCTTTGGG---STTGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCT-TSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTC
T ss_pred ccchhhhhc---cccchHHHHHhCCCcCHHHHHHHHHcCHHHHHhh-cCCCCCEEEEecCCCCcCChHHHHHHHHHHHHH
Confidence 999886542 2222345577899988888899999999999997 665 8888999999999999999999999 99
Q ss_pred cCCCCCCCcEEE--EcCCCCCCCc-hhhHHHHHHHHHHHHHHhhc
Q 004866 684 STIYDPKRPILL--NLTTDIVEEN-RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 684 ~~~~~~~~~~~~--~~~~gH~~~~-~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++ ++.+ ++++||++.. ....+...+.+++||.++|+
T Consensus 668 ~g~-----pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg 707 (711)
T 4hvt_A 668 PNT-----KTYFLESKDSGHGSGSDLKESANYFINLYTFFANALK 707 (711)
T ss_dssp TTC-----CEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred cCC-----CEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhC
Confidence 884 3444 8999999766 67788888899999999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=461.66 Aligned_cols=519 Identities=13% Similarity=0.061 Sum_probs=383.1
Q ss_pred CCCCCE-EEEEEeCCCCcEEEEEEEECC--C-Cceecccc------ccccceeEEecCCCEEEEEEecCC-----CCCce
Q 004866 130 SPDHKF-LAYTMYDKDNDYFTLSVRNLN--S-GALCSKPQ------AVRVSNIAWAKDGQALIYVVTDQN-----KRPYQ 194 (726)
Q Consensus 130 SPDG~~-la~~~~~~g~e~~~l~v~dl~--t-g~~~~~~~------~~~~~~~~WspDg~~l~y~~~~~~-----~~~~~ 194 (726)
||||++ |||+.+.. .+||+++++ + ++...++. ......++|||||+.|+|++.+.. ....+
T Consensus 87 SPDg~~~la~~~~~~----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 87 RPAGGPLLVFTHFGD----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CSSSSCEEEEEBTTT----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred ecCCCeEEEEEECCC----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 499999 99986542 359999998 5 77666554 224578999999999999976521 23368
Q ss_pred EEEEEcCC------CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC-----CceEEEEEeCC-CCC-CCeEEeeccC
Q 004866 195 IYCSIIGS------TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST-----TSSKVFLINAA-DPF-SGLTLIWECE 261 (726)
Q Consensus 195 l~~~~l~t------~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~-----~~~~l~~~d~~-~~~-~~~~~l~~~~ 261 (726)
||++++.+ +.. ..+. +....+...+.|||||++|++.+... ...+||++|++ ++. .+.+.+....
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred EEEEECCCCccccCCce-eEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 99999987 433 2232 12223455688999999999988654 34789999998 421 1455565542
Q ss_pred -C-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCce-------EEEEeee-CCEEEE
Q 004866 262 -G-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLV-------VEDVDFC-KTHMAL 331 (726)
Q Consensus 262 -~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~-------l~~~~~~-~~~lv~ 331 (726)
. .....+++||+ +++.++.++ ..+|+.++++ .++++.++....+.. +..+.+. ++.+++
T Consensus 241 ~~~~~~~~~spdg~-l~~~~~~~~------~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 241 EEAIAQAEWAPDGS-LIVATDRTG------WWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp TBCEEEEEECTTSC-EEEEECTTS------SCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred CceEcceEECCCCe-EEEEECCCC------CeEEEEEECC----CCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 2 23456788998 888887653 3579998875 244555543322110 2334443 567888
Q ss_pred EEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCc-eeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004866 332 ILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKY-VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 410 (726)
Q Consensus 332 ~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 410 (726)
.... |..+|++++++++. + ..+..+.. +..+ .+++++.+++..++...|.++|.+|+++++.
T Consensus 310 ~~~~-~~~~l~~~d~~~~~------~-----~~l~~~~~~~~~~-----~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE------L-----VDAAGPWTEWAAT-----LTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE------E-----EECCSSCCEEEEE-----EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEc-CccEEEEEECCCCc------E-----EEecCCCCeEEEE-----EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 8888 88999999976432 1 12333322 1111 0456788999999999999999999999988
Q ss_pred EEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCC-
Q 004866 411 NIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYK- 489 (726)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~- 489 (726)
+.++..+... .+......++.+.+++.||.+|++++++|++..
T Consensus 373 ~~l~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~~~ 416 (662)
T 3azo_A 373 RTIGARHTDP------------------------------------VDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDF 416 (662)
T ss_dssp EEEESCCCCS------------------------------------SCGGGSCCCEEEEEECTTSCEEEEEEECCCCSSE
T ss_pred EEeecCCccc------------------------------------CCccccCcceEEEEEcCCCCEEEEEEECCCCccc
Confidence 8776543210 011233457888999999999999999998754
Q ss_pred ---CCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH
Q 004866 490 ---KENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE 566 (726)
Q Consensus 490 ---~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 566 (726)
++++.|+||++||+++......|....+.|+++||+|+.+|+||++++|..|.......++...++|+.+++++|++
T Consensus 417 ~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 496 (662)
T 3azo_A 417 TGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAE 496 (662)
T ss_dssp ECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 45678999999999887766788888999999999999999999999999998877777777789999999999999
Q ss_pred cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhh-hcccCCCCChhHHHHHHhcC
Q 004866 567 KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAAD-YEEFGYPGDIDDFHAIRNYS 645 (726)
Q Consensus 567 ~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~s 645 (726)
++.+|++||+|+|+||||+++++++.+ |++|+++|+.+|+.|+...+........... ...+|.+. +..+.+.+++
T Consensus 497 ~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s 573 (662)
T 3azo_A 497 EGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFE--EFPERYRDRA 573 (662)
T ss_dssp TTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSCGGGTTHHHHHTCCTT--TCHHHHHHTC
T ss_pred cCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcccccchhhHhHHHHhCCCc--cchhHHHhhC
Confidence 999999999999999999999999986 9999999999999998764431111111111 11245433 3456688899
Q ss_pred cccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 646 PYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 646 p~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|+.++.+ ++.|+|++||..|.+||+.++.+++++|++++++ ..+++++++||++.......+....+++||.++|+
T Consensus 574 p~~~~~~-~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~---~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 649 (662)
T 3azo_A 574 PLTRADR-VRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVP---HAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFG 649 (662)
T ss_dssp GGGGGGG-CCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCC---EEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred hHhHhcc-CCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCC---EEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHhC
Confidence 9999987 8999999999999999999999999999998753 12222899999876555667777888999999986
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=437.28 Aligned_cols=525 Identities=13% Similarity=0.095 Sum_probs=372.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccc--------------------cceeEEecCCCEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVR--------------------VSNIAWAKDGQALIY 183 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~--------------------~~~~~WspDg~~l~y 183 (726)
+..++|||||++|||+.+ + +||++|+++|+..+++..+. ...+.|||||+.|+|
T Consensus 114 ~~~~~~SPdG~~la~~~~--~----~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~ 187 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVWN--N----DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAY 187 (740)
T ss_dssp EEEEEECSSTTCEEEEET--T----EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred ceeeEECCCCCEEEEEEC--C----eEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEE
Confidence 456789999999999953 2 59999999998777654221 124899999999999
Q ss_pred EEecCCC-------------------------------CCceEEEEEcCC---CC--ceeEEeee----cCCceEEEEEE
Q 004866 184 VVTDQNK-------------------------------RPYQIYCSIIGS---TD--EDALLLEE----SNENVYVNIRH 223 (726)
Q Consensus 184 ~~~~~~~-------------------------------~~~~l~~~~l~t---~~--~~~lv~~~----~d~~~~~~~~~ 223 (726)
.+.+... ....|+++++.+ ++ ....+... ....+...+.|
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w 267 (740)
T 4a5s_A 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW 267 (740)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEE
T ss_pred EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEE
Confidence 9765431 012688889887 52 11112110 13345567899
Q ss_pred cCCCcEEEEEEcCCC-ceEEEEEeCCCCCC-----CeEEe-eccCC-------ceEEeeeecCCEEE-EEecCcccCCCC
Q 004866 224 TKDFHFVCVHTFSTT-SSKVFLINAADPFS-----GLTLI-WECEG-------LAHCIVEHHEGFLY-LFTDAAKEGQEA 288 (726)
Q Consensus 224 s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~-----~~~~l-~~~~~-------~~~~~~~~~g~~l~-~~t~~~~~~~~~ 288 (726)
||||+.+++..++.. ...|+++|+.++.. ....+ ..... .....+++||+.++ +.++.++
T Consensus 268 spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G----- 342 (740)
T 4a5s_A 268 ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG----- 342 (740)
T ss_dssp EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS-----
T ss_pred eCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC-----
Confidence 999998887777654 47899999988531 01112 12111 11346789999987 6666543
Q ss_pred CCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEe----CCeeEEEEEecCCCCCCcceeeccccccc
Q 004866 289 DNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILRE----GRTYRLCSVSLPLPAGKGVVHLKELHPHF 364 (726)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~----~g~~~l~~~~l~~~~~~~~~~~~~~~~~~ 364 (726)
...|+.++++ . +..+.|.....+. ..-+.+.++.|++.... .+..+|++++++.+. ....++
T Consensus 343 -~~~l~~~~~~-~---~~~~~lT~g~~~v-~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~--~~~~lt------ 408 (740)
T 4a5s_A 343 -YRHICYFQID-K---KDCTFITKGTWEV-IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT--KVTCLS------ 408 (740)
T ss_dssp -CEEEEEEETT-C---SSCEESCCSSSCE-EEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEE--EEEESS------
T ss_pred -ceEEEEEECC-C---CceEecccCCEEE-EEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCC--cceeec------
Confidence 3678888876 2 2334444332222 22233447888888876 456789999876321 000111
Q ss_pred ccC--C-CceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccc
Q 004866 365 LPL--P-KYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKS 441 (726)
Q Consensus 365 ~~~--p-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (726)
..+ . ....+ .++++++..++++++++. |+.++.++..+++...+...+....
T Consensus 409 ~~~~~~~~~~~~----~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~-------------------- 463 (740)
T 4a5s_A 409 CELNPERCQYYS----VSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALD-------------------- 463 (740)
T ss_dssp TTTSTTTBCBEE----EEECTTSSEEEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHH--------------------
T ss_pred cccCCCCCceEE----EEECCCCCEEEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhh--------------------
Confidence 111 0 11222 245678899999999998 8899999998887655443321000
Q ss_pred cccccccccCCCCccCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-Cccch-HHHHHH
Q 004866 442 GESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWR-SELKSL 519 (726)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~-~~~~~l 519 (726)
...........+.+.+ +.||.+|+++++.|+++.+.+++|+||++||+++.+. ...|. .....|
T Consensus 464 -------------~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~l 529 (740)
T 4a5s_A 464 -------------KMLQNVQMPSKKLDFI-ILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYL 529 (740)
T ss_dssp -------------HHHTTEECCEEEEEEE-EETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHH
T ss_pred -------------hhhhhccCCccEEEEE-ccCCeEEEEEEEeCCCCCCCCCccEEEEECCCCcccccccccCcCHHHHH
Confidence 0000123445677777 7899999999999998777788999999999988742 33343 233455
Q ss_pred H-HCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCce
Q 004866 520 L-DRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598 (726)
Q Consensus 520 ~-~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f 598 (726)
+ ++||+|+++|+||+|++|..|.......++...++|+.+++++|++++++|++||+|+|+||||+++++++.++|++|
T Consensus 530 ~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~ 609 (740)
T 4a5s_A 530 ASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVF 609 (740)
T ss_dssp HHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCC
T ss_pred HhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCce
Confidence 5 599999999999999999999988888888888999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccccccCCCCCCChhhhcc--cCCCCChhHHHHHHhcCcccccccCCCC-CeEEEEecCCCCcChHHHH
Q 004866 599 RAVVLEVPFLDATNTLLYPILPLIAADYEE--FGYPGDIDDFHAIRNYSPYDNIQKDVLY-PAVLVTSSFNTRFGVWEAA 675 (726)
Q Consensus 599 ~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~sp~~~i~~~~~~-P~lli~g~~D~~V~~~~~~ 675 (726)
+|+|+.+|+.|+.... ..+.+ +|.|...+..+.+...+|+.++.+ ++. |+|++||..|.+||+.++.
T Consensus 610 ~~~v~~~p~~~~~~~~---------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-i~~~P~Lii~G~~D~~v~~~~~~ 679 (740)
T 4a5s_A 610 KCGIAVAPVSRWEYYD---------SVYTERYMGLPTPEDNLDHYRNSTVMSRAEN-FKQVEYLLIHGTADDNVHFQQSA 679 (740)
T ss_dssp SEEEEESCCCCGGGSB---------HHHHHHHHCCSSTTTTHHHHHHSCSGGGGGG-GGGSEEEEEEETTCSSSCTHHHH
T ss_pred eEEEEcCCccchHHhh---------hHHHHHHcCCCCccccHHHHHhCCHHHHHhc-CCCCcEEEEEcCCCCccCHHHHH
Confidence 9999999999976321 11222 366633345677889999998887 776 8999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 676 KWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 676 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++++|++++++ ..+.+++++||++............+.+||.++|+
T Consensus 680 ~l~~~l~~~g~~---~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 726 (740)
T 4a5s_A 680 QISKALVDVGVD---FQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726 (740)
T ss_dssp HHHHHHHHTTCC---CEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCC---eEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcC
Confidence 999999998854 12233899999875545566667788999999985
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=419.76 Aligned_cols=518 Identities=13% Similarity=0.099 Sum_probs=370.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccc------------------cceeEEecCCCEEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVR------------------VSNIAWAKDGQALIYVV 185 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~------------------~~~~~WspDg~~l~y~~ 185 (726)
+..++|||||++|||+.+ + +|+++|+++|+...++.... ...+.|||||+.|+|..
T Consensus 154 ~~~~~~SPDG~~la~~~~--~----~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 154 ATDAKLSPKGGFVSFIRG--R----NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp EEEEEECTTSSEEEEEET--T----EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC--C----cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 556789999999999863 2 69999999998776544221 36799999999999987
Q ss_pred ecCCC----------------------------CCceEEEEEcCC-CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 186 TDQNK----------------------------RPYQIYCSIIGS-TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 186 ~~~~~----------------------------~~~~l~~~~l~t-~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
.+... ....|+++++.+ ++...+............+.| |||++|++....
T Consensus 228 ~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~ 306 (741)
T 2ecf_A 228 IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS 306 (741)
T ss_dssp EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE
T ss_pred EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEec
Confidence 65421 112788889887 653322211122334457899 999999988753
Q ss_pred C--CceEEEEEeCCCCCCCeEEeeccCCc------eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCce
Q 004866 237 T--TSSKVFLINAADPFSGLTLIWECEGL------AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWE 308 (726)
Q Consensus 237 ~--~~~~l~~~d~~~~~~~~~~l~~~~~~------~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (726)
. ....|+++|+.++ +.+.+...... ....+++||+ +++.++.++ ...|+.++.+ . . ..
T Consensus 307 ~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g------~~~l~~~~~~-~---~-~~ 372 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASN--QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG------FQHLYRIDSK-G---K-AA 372 (741)
T ss_dssp TTSSEEEEEEEETTTC--CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS------SCEEEEECSS-S---C-EE
T ss_pred ccCCeEEEEEEECCCC--ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC------ccEEEEEcCC-C---C-ee
Confidence 2 3578999999884 44444432211 2345778888 666666543 3678888865 1 2 44
Q ss_pred EEeecCCCc-eEEEEeeeCCEEEEEEEeCC--eeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCc
Q 004866 309 SVFIDDQGL-VVEDVDFCKTHMALILREGR--TYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSS 385 (726)
Q Consensus 309 ~v~~~~~~~-~l~~~~~~~~~lv~~~~~~g--~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 385 (726)
.+..+.... .+..++..++.|++....++ ..+|+.++++... ...+.....+.+ ..+++|++
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~-----------~~~l~~~~~~~~----~~~spdg~ 437 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ-----------PQRLSKAPGMHS----ASFARNAS 437 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC-----------CEECCCSCSEEE----EEECTTSS
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC-----------eeecccCCCceE----EEECCCCC
Confidence 443332222 12235556678888888777 5567777654221 112222222322 23568899
Q ss_pred EEEEEEccCCCCceEEEEECCCCeEEEEEeecc-ccccccccccCcccccccccccccccccccccCCCCccCcCC--CC
Q 004866 386 TMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNM-LRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLS--EF 462 (726)
Q Consensus 386 ~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 462 (726)
.+++.++++.+|+++|.+|..++..+.+..... ..+ .++... ..
T Consensus 438 ~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~---------------------------------~~~~~~~~~~ 484 (741)
T 2ecf_A 438 VYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPK---------------------------------HPYARYREAQ 484 (741)
T ss_dssp EEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTT---------------------------------STTHHHHTTC
T ss_pred EEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccc---------------------------------cchhhhhccC
Confidence 999999999999999999987665544432111 000 000001 34
Q ss_pred ceEEEEEEECCCC-cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-Cccch-----HHHHHHHHCCcEEEEEccCCCC
Q 004866 463 YSCEQYDVPSHDG-ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWR-----SELKSLLDRGWVVAFADVRGGG 535 (726)
Q Consensus 463 ~~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~-----~~~~~l~~~G~~v~~~d~RG~g 535 (726)
...+.+.+++.|| .+|+++++.|++..++++.|+||++||+++... ...|. ...+.|+++||+|+++|+||+|
T Consensus 485 ~~~~~~~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g 564 (741)
T 2ecf_A 485 RPVEFGTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTP 564 (741)
T ss_dssp CCEEEEEEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCTTCS
T ss_pred CCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEecCCCC
Confidence 5788999999999 999999999987655677899999999877642 23454 5778899999999999999999
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc
Q 004866 536 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 615 (726)
Q Consensus 536 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 615 (726)
++|..|.......++...++|+.+++++|.+++.+|++||+|+|+||||++++.++.++|++|+++|+.+|+.++....
T Consensus 565 ~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~- 643 (741)
T 2ecf_A 565 RRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYD- 643 (741)
T ss_dssp SSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSB-
T ss_pred CCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhc-
Confidence 9998888776666777789999999999999988999999999999999999999999999999999999998865210
Q ss_pred CCCCCCChhhhc-ccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 616 YPILPLIAADYE-EFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 616 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
..... .++.|. +..+.+...+|+.++.+ ++.|+|++||..|.+||+.++.+++++|+.++++ ..+.
T Consensus 644 -------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~---~~~~ 710 (741)
T 2ecf_A 644 -------SHYTERYMDLPA--RNDAGYREARVLTHIEG-LRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQP---FELM 710 (741)
T ss_dssp -------HHHHHHHHCCTG--GGHHHHHHHCSGGGGGG-CCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCC---CEEE
T ss_pred -------cccchhhcCCcc--cChhhhhhcCHHHHHhh-CCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCCc---eEEE
Confidence 01111 125554 23456778899998887 8999999999999999999999999999998753 1222
Q ss_pred EEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 695 LNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 695 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++++||++..... ......+++||.++|+
T Consensus 711 ~~~~~~H~~~~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 711 TYPGAKHGLSGADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp EETTCCSSCCHHHH-HHHHHHHHHHHHHHHC
T ss_pred EECCCCCCCCCCch-hHHHHHHHHHHHHhcC
Confidence 38999998755222 5556677899999885
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=414.74 Aligned_cols=515 Identities=13% Similarity=0.118 Sum_probs=366.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-----Cceecccccc-c---------------cceeEEecCCCEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-----GALCSKPQAV-R---------------VSNIAWAKDGQALI 182 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-----g~~~~~~~~~-~---------------~~~~~WspDg~~l~ 182 (726)
+..++|||||++|||+.+ + +|+++|+++ |+...++... . ...+.|||||+.|+
T Consensus 123 ~~~~~~SpdG~~la~~~~--~----~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 123 TASLDFSPVGDRVAYVRN--H----NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp CTTCEECTTSSEEEEEET--T----EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred ccCCcCCCCCCEEEEEEC--C----eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence 456789999999999742 3 599999999 8877654422 1 36899999999999
Q ss_pred EEEecCC----------------------------CCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEE
Q 004866 183 YVVTDQN----------------------------KRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHT 234 (726)
Q Consensus 183 y~~~~~~----------------------------~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~ 234 (726)
|...+.. .....|+++++.++....+........+...+.|||||++|++.+
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 276 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE 276 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence 9975432 123579999998764222211112223445789999999999876
Q ss_pred cCC--CceEEEEEeCCCCCCCeEEeeccCCc------eEEeeee--cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCC
Q 004866 235 FST--TSSKVFLINAADPFSGLTLIWECEGL------AHCIVEH--HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPS 304 (726)
Q Consensus 235 ~~~--~~~~l~~~d~~~~~~~~~~l~~~~~~------~~~~~~~--~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (726)
... ....|+++|+.++. ..+.+...... ....+++ +|+ +++.++.++ ..+|+.++.+ .
T Consensus 277 ~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g------~~~l~~~~~~----~ 344 (706)
T 2z3z_A 277 VNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDG------WNHLYLYDTT----G 344 (706)
T ss_dssp ECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTS------SCEEEEEETT----S
T ss_pred eCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCC------ccEEEEEECC----C
Confidence 543 23689999998842 34444322111 1235677 776 555555543 3678888854 1
Q ss_pred CCceEEeecCCCce-EEEEeeeCCEEEEEEEeCC--eeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCc
Q 004866 305 RTWESVFIDDQGLV-VEDVDFCKTHMALILREGR--TYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYD 381 (726)
Q Consensus 305 ~~~~~v~~~~~~~~-l~~~~~~~~~lv~~~~~~g--~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 381 (726)
...+.+..+..... +..++..++.|++....++ ...|+.+++.++. ...+.....+.+ ..++
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----------~~~l~~~~~~~~----~~~s 409 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----------TKDLTPESGMHR----TQLS 409 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----------CEESCCSSSEEE----EEEC
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----------ceeccCCCceEE----EEEC
Confidence 23343433222211 1245555678888877766 4688988876532 112222222222 2356
Q ss_pred CCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccccccCCCCccCcCCC
Q 004866 382 YYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSDSDNLWNDLSE 461 (726)
Q Consensus 382 ~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (726)
+++..+++..++...|++++.+|+++++.+.+...+.. ....
T Consensus 410 pdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~~~~~~~--------------------------------------~~~~ 451 (706)
T 2z3z_A 410 PDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPD--------------------------------------TGYA 451 (706)
T ss_dssp TTSSEEEEEEECSSCSCEEEEEESSSCEEEEEECC--------------------------------------------C
T ss_pred CCCCEEEEEecCCCCCcEEEEEECCCCeEeeccccchh--------------------------------------hhcC
Confidence 78899999999999999999999988874333322110 0023
Q ss_pred CceEEEEEEECCCC-cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCC-ccchH----HHHHHHHCCcEEEEEccCCCC
Q 004866 462 FYSCEQYDVPSHDG-ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD-KRWRS----ELKSLLDRGWVVAFADVRGGG 535 (726)
Q Consensus 462 ~~~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~----~~~~l~~~G~~v~~~d~RG~g 535 (726)
....+.+.+++.|| .+++++++.|+++.+++++|+||++|||++.... ..|.. ..+.|+++||+|+++|+||+|
T Consensus 452 ~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~g 531 (706)
T 2z3z_A 452 MPEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSA 531 (706)
T ss_dssp CCCEEEEEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTTCS
T ss_pred CCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCCCc
Confidence 45678899999999 9999999999987666789999999998876532 35654 578899999999999999999
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc
Q 004866 536 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 615 (726)
Q Consensus 536 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 615 (726)
++|..|.......++...++|+.+++++|.+++.+|++|++|+|+||||++++.++.++|++|+++|+.+|+.++....
T Consensus 532 ~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~- 610 (706)
T 2z3z_A 532 NRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYA- 610 (706)
T ss_dssp SSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSB-
T ss_pred ccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHH-
Confidence 9998888777767777789999999999999888999999999999999999999999999999999999998875311
Q ss_pred CCCCCCChhhhc-ccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 616 YPILPLIAADYE-EFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 616 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
..... .++.|.. ..+.+...+|...+.+ ++.|+|++||..|.+||+.++.+++++|+.++++ ..+.
T Consensus 611 -------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~---~~~~ 677 (706)
T 2z3z_A 611 -------IMYGERYFDAPQE--NPEGYDAANLLKRAGD-LKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTY---PDYY 677 (706)
T ss_dssp -------HHHHHHHHCCTTT--CHHHHHHHCGGGGGGG-CCSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCC---CEEE
T ss_pred -------hhhhhhhcCCccc--ChhhhhhCCHhHhHHh-CCCCEEEEeeCCCCCCCHHHHHHHHHHHHHCCCC---eEEE
Confidence 01111 1355543 2345677899988887 8899999999999999999999999999998754 2233
Q ss_pred EEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 695 LNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 695 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
+++++||+.... ........+.+||.++|
T Consensus 678 ~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 678 VYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp EETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 389999986543 44556667889999876
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=409.84 Aligned_cols=499 Identities=14% Similarity=0.094 Sum_probs=363.1
Q ss_pred EeeceeeCCCCCEEEEEEeC-CCCcEEEEEEEEC--CCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYD-KDNDYFTLSVRNL--NSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~-~g~e~~~l~v~dl--~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+..+.|||| +++|+.+. .|.+...||++++ +++.. .++........+|+|||+.++|+..... .+.+++
T Consensus 66 ~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~----~~~l~d 138 (582)
T 3o4h_A 66 SVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATED----RVALYA 138 (582)
T ss_dssp EECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSS----CEEEEE
T ss_pred ccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCC----CceEEE
Confidence 4567889999 68888775 5666788999999 66554 4433333446799999999988864322 334568
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYL 277 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~ 277 (726)
+.+++...+. .... .++.|||||++|++.+.... ...||++|+.+ ++.+.++..... ....++|||+.|+
T Consensus 139 ~~~g~~~~l~-~~~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~--g~~~~l~~~~~~~~~~~~SpDG~~l~- 210 (582)
T 3o4h_A 139 LDGGGLRELA-RLPG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS--GGLRVFDSGEGSFSSASISPGMKVTA- 210 (582)
T ss_dssp EETTEEEEEE-EESS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTT--CCCEEECCSSCEEEEEEECTTSCEEE-
T ss_pred ccCCcEEEee-cCCC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC--CCceEeecCCCccccceECCCCCEEE-
Confidence 8776533333 3222 35789999999998776543 36799999988 455666554432 3456889999988
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE----------EeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED----------VDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~----------~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
.++.++ ...|+.++++ . +..+ ++.. .+..+.. ++..+ .+++....+|..+|+.+
T Consensus 211 ~~~~~~------~~~i~~~d~~-~---~~~~-~~~~-~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--- 274 (582)
T 3o4h_A 211 GLETAR------EARLVTVDPR-D---GSVE-DLEL-PSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--- 274 (582)
T ss_dssp EEECSS------CEEEEEECTT-T---CCEE-ECCC-SCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET---
T ss_pred EccCCC------eeEEEEEcCC-C---CcEE-EccC-CCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE---
Confidence 444332 3578899886 2 3333 3322 2222222 33344 88888888987777655
Q ss_pred CCCCCcceeecccccccccCCC-ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeecccccccccc
Q 004866 348 LPAGKGVVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRIL 426 (726)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (726)
++ . +..+. .+.++ .++ .+.++++.++..+|+++|.+|..+ +.+.| ..... .
T Consensus 275 -g~------~-------~~~~~~~v~~~----~~s--dg~~l~~~s~~~~p~~l~~~d~~~-~~~~l---~~~~~---~- 326 (582)
T 3o4h_A 275 -GE------R-------VEAPQGNHGRV----VLW--RGKLVTSHTSLSTPPRIVSLPSGE-PLLEG---GLPED---L- 326 (582)
T ss_dssp -TE------E-------ECCCSSEEEEE----EEE--TTEEEEEEEETTEEEEEEEETTCC-EEECC---CCCHH---H-
T ss_pred -CC------e-------eccCCCceEEE----Eec--CCEEEEEEcCCCCCCeEEEEcCCC-ceEEE---ecCCc---c-
Confidence 21 1 11222 22222 234 345678999999999999999865 44433 11000 0
Q ss_pred ccCcccccccccccccccccccccCCCCccCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC
Q 004866 427 YGTASSATISLNAKSGESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE 506 (726)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~ 506 (726)
+ ......+.+++++.||.+|+++++.|++.. .+.|+||++||+++.
T Consensus 327 -------------------------~-------~~~~~~~~~~~~~~~g~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~ 372 (582)
T 3o4h_A 327 -------------------------R-------RSIAGSRLVWVESFDGSRVPTYVLESGRAP--TPGPTVVLVHGGPFA 372 (582)
T ss_dssp -------------------------H-------HTEEEEEEEEEECTTSCEEEEEEEEETTSC--SSEEEEEEECSSSSC
T ss_pred -------------------------c-------cccCcceEEEEECCCCCEEEEEEEcCCCCC--CCCcEEEEECCCccc
Confidence 0 235678899999999999999999998754 378999999999887
Q ss_pred CCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHH
Q 004866 507 LLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLL 586 (726)
Q Consensus 507 ~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l 586 (726)
.....|....+.|+++||+|+.+|+||++++|..|.......++...++|+.+++++|++++.+| ||+|+|+||||++
T Consensus 373 ~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~ 450 (582)
T 3o4h_A 373 EDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYM 450 (582)
T ss_dssp CCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHH
T ss_pred ccccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHH
Confidence 66678888999999999999999999999999999988888888889999999999999998887 9999999999999
Q ss_pred HHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCC
Q 004866 587 VAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFN 666 (726)
Q Consensus 587 ~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D 666 (726)
++.++.++|++|+++|+.+|+.++..................+| +..+.+..++|+.++.+ ++.|+|++||..|
T Consensus 451 a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~sp~~~~~~-i~~P~lii~G~~D 524 (582)
T 3o4h_A 451 TLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG-----GSREIMRSRSPINHVDR-IKEPLALIHPQNA 524 (582)
T ss_dssp HHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHHHTT-----TCHHHHHHTCGGGGGGG-CCSCEEEEEETTC
T ss_pred HHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHHHcC-----cCHHHHHhcCHHHHHhc-CCCCEEEEecCCC
Confidence 99999999999999999999999875432211111000011133 24566888999999987 8999999999999
Q ss_pred CCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 667 TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 667 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.+||+.++.+++++|++++++ ..+.+++++||++.......+....+++||.++|+
T Consensus 525 ~~v~~~~~~~~~~~l~~~g~~---~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~l~ 580 (582)
T 3o4h_A 525 SRTPLKPLLRLMGELLARGKT---FEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 580 (582)
T ss_dssp SSSCHHHHHHHHHHHHHTTCC---EEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhCCCC---EEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998853 12222899999876555666777788999999985
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=413.27 Aligned_cols=526 Identities=13% Similarity=0.088 Sum_probs=360.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc--------------------ccceeEEecCCCEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV--------------------RVSNIAWAKDGQALIY 183 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~--------------------~~~~~~WspDg~~l~y 183 (726)
+..++|||||++|||+.+ + +|+++|+++|+..+++..+ ....++|||||+.|+|
T Consensus 112 ~~~~~~SPDG~~la~~~~--~----~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVYQ--N----NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp BCCEEECSSTTCEEEEET--T----EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred cccceECCCCCEEEEEEC--C----eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 456799999999999853 2 6999999999877654321 1147999999999999
Q ss_pred EEecCCC-----------------------------CCceEEEEEcCCCCce--eEEee----ecCCceEEEEEEcCCCc
Q 004866 184 VVTDQNK-----------------------------RPYQIYCSIIGSTDED--ALLLE----ESNENVYVNIRHTKDFH 228 (726)
Q Consensus 184 ~~~~~~~-----------------------------~~~~l~~~~l~t~~~~--~lv~~----~~d~~~~~~~~~s~Dg~ 228 (726)
.+.+... ....|+++++.+++.. ..+.. .....+...+.|||||+
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 8766321 1226788888765421 11110 01223345789999987
Q ss_pred EEEEEEcCC-CceEEEEEe----CCCCCCCeEEee----ccCCc-e------EEeeeecCCEEEEEecCcccCCCCCCeE
Q 004866 229 FVCVHTFST-TSSKVFLIN----AADPFSGLTLIW----ECEGL-A------HCIVEHHEGFLYLFTDAAKEGQEADNHY 292 (726)
Q Consensus 229 ~l~~~~~~~-~~~~l~~~d----~~~~~~~~~~l~----~~~~~-~------~~~~~~~g~~l~~~t~~~~~~~~~~~~~ 292 (726)
.++...++. ...+||++| +.++ +.+.+. ....+ + ...+++||+.+++.+....+ ...
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g-----~~~ 338 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTW--DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG-----YKH 338 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSE--ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS-----CEE
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCC--ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC-----ceE
Confidence 555544433 347899999 7663 222232 11111 1 34578999988886543321 367
Q ss_pred EEEeeCCCCCCCCCceEEeecCCCceEEE-EeeeCCEEEEEEEe----CCeeEEEEEecCCCCCCcceeecccccccccC
Q 004866 293 LLRCPVDASFPSRTWESVFIDDQGLVVED-VDFCKTHMALILRE----GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL 367 (726)
Q Consensus 293 l~~~~~~~~~~~~~~~~v~~~~~~~~l~~-~~~~~~~lv~~~~~----~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (726)
|+.++++ . ...+.+..+..+ +.. ..+.++.|++.... .+..+|+.++++++..+ ...+ ...+
T Consensus 339 l~~~~~~-~---~~~~~lt~~~~~--v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~l------~~~~ 405 (719)
T 1z68_A 339 IHYIKDT-V---ENAIQITSGKWE--AINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS-KKCV------TCHL 405 (719)
T ss_dssp EEEESSC-S---TTCEECSCSSSC--EEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCC-EEES------STTT
T ss_pred EEEEECC-C---CceEecccCceE--EEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCC-ceec------cCcc
Confidence 8888876 2 234444333222 222 11256778877766 56778988887533100 0011 0112
Q ss_pred CCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeeccccccccccccCcccccccccccccccccc
Q 004866 368 PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNMLRERTRILYGTASSATISLNAKSGESVNE 447 (726)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (726)
+...+.+. ...++++++.+++.+++++.| .++.+|+++++...+...+....
T Consensus 406 ~~~~~~~~-~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~-------------------------- 457 (719)
T 1z68_A 406 RKERCQYY-TASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELE-------------------------- 457 (719)
T ss_dssp TTTTBCBE-EEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHH--------------------------
T ss_pred CCCCCceE-EEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhh--------------------------
Confidence 21111110 123456788899999999988 68899998887554433321000
Q ss_pred cccCCCCccCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-Cccch-HHHHHHH-HCCc
Q 004866 448 LKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWR-SELKSLL-DRGW 524 (726)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~-~~~~~l~-~~G~ 524 (726)
...+......++.+++++.| .+|+++++.|++..++++.|+||++||+++... ...|. .....|+ ++||
T Consensus 458 -------~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~ 529 (719)
T 1z68_A 458 -------NALKNIQLPKEEIKKLEVDE-ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGM 529 (719)
T ss_dssp -------HHTTSBCCCEEEEEEEEETT-EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCC
T ss_pred -------hhhccccCCceEEEEEecCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCcccccchhhHHHHHHhcCCe
Confidence 00011344578899999988 899999999998766678999999999987643 33443 2334454 7899
Q ss_pred EEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 525 VVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 525 ~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
+|+.+|+||+|++|..|.......++...++|+.+++++|++++.+|++||+|+|+||||++++.++.++|++|+++|+.
T Consensus 530 ~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 609 (719)
T 1z68_A 530 VIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAV 609 (719)
T ss_dssp EEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEE
T ss_pred EEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEc
Confidence 99999999999999998887777777778999999999999988899999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCCChhhhc--ccCCCCChhHHHHHHhcCcccccccCCCC-CeEEEEecCCCCcChHHHHHHHHHH
Q 004866 605 VPFLDATNTLLYPILPLIAADYE--EFGYPGDIDDFHAIRNYSPYDNIQKDVLY-PAVLVTSSFNTRFGVWEAAKWVARV 681 (726)
Q Consensus 605 ~p~~d~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~sp~~~i~~~~~~-P~lli~g~~D~~V~~~~~~~~~~~L 681 (726)
+|+.++.... ..+. .+|.|...+..+.+...+|+.++.+ ++. |+|++||..|.+||+.++.+++++|
T Consensus 610 ~~~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~P~li~~G~~D~~v~~~~~~~~~~~l 679 (719)
T 1z68_A 610 APVSSWEYYA---------SVYTERFMGLPTKDDNLEHYKNSTVMARAEY-FRNVDYLLIHGTADDNVHFQNSAQIAKAL 679 (719)
T ss_dssp SCCCCTTTSB---------HHHHHHHHCCSSTTTTHHHHHHTCSGGGGGG-GTTSEEEEEEETTCSSSCTHHHHHHHHHH
T ss_pred CCccChHHhc---------cccchhhcCCcccccchhhhhhCCHhHHHhc-CCCCcEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 9998875320 1111 2466643344566788899888887 777 7999999999999999999999999
Q ss_pred HhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 682 RESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
++++++ ..+.+++++||++ ...........+.+||.++|+
T Consensus 680 ~~~~~~---~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 680 VNAQVD---FQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp HHTTCC---CEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCc---eEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 998753 1222389999987 333445556678899999885
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=409.79 Aligned_cols=525 Identities=13% Similarity=0.110 Sum_probs=358.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc--c------------------cceeEEecCCCEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV--R------------------VSNIAWAKDGQALIY 183 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~--~------------------~~~~~WspDg~~l~y 183 (726)
+..++|||||++|||+.+ + +|+++|+++|+...++... . ...++|||||+.|+|
T Consensus 116 ~~~~~~SPdG~~la~~~~--~----~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~ 189 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE--N----NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (723)
T ss_dssp CSBCCBCSSTTCEEEEET--T----EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred ccccEECCCCCEEEEEEC--C----eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence 556789999999999874 2 5999999999877654321 1 156999999999999
Q ss_pred EEecCCC-----------------------------CCceEEEEEcCCCCceeEEeeecC-----CceEEEEEEcCCCcE
Q 004866 184 VVTDQNK-----------------------------RPYQIYCSIIGSTDEDALLLEESN-----ENVYVNIRHTKDFHF 229 (726)
Q Consensus 184 ~~~~~~~-----------------------------~~~~l~~~~l~t~~~~~lv~~~~d-----~~~~~~~~~s~Dg~~ 229 (726)
...+... ....|+++++.++.....+ .... ......+.|||||++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM-MPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC-CCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe-eCCccCCCccceeEEEEEeCCCeE
Confidence 8765321 1237889998776521222 2111 223456899999998
Q ss_pred EEEEEcCC-CceEEEEEeCCCCCCCeEEeecc-CCc------eEEeeeecCCEEEEE-ecCcccCCCCCCeEEEEee-CC
Q 004866 230 VCVHTFST-TSSKVFLINAADPFSGLTLIWEC-EGL------AHCIVEHHEGFLYLF-TDAAKEGQEADNHYLLRCP-VD 299 (726)
Q Consensus 230 l~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~-~~~------~~~~~~~~g~~l~~~-t~~~~~~~~~~~~~l~~~~-~~ 299 (726)
|++..++. ....|+++|+.++ +.+.+... ..+ ....+++||+.|++. ++.++.. .....|+.++ ..
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~--~~~~~l~~~d~~~ 344 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTG--VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR--GKFYHITVSSSQP 344 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTC--CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS--SCEEEEEEECSSC
T ss_pred EEEEEcCCCCeEEEEEEeCCCC--cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC--cceeEEEEEeccC
Confidence 87766654 3478999999884 44443321 111 145678999999887 4443311 1135788888 33
Q ss_pred CCCCCCCceEEeecCCCce-EEEEeeeCCEEEEEEEeC--CeeEEEEEecCCCCCCcceeecccccccccC----CCcee
Q 004866 300 ASFPSRTWESVFIDDQGLV-VEDVDFCKTHMALILREG--RTYRLCSVSLPLPAGKGVVHLKELHPHFLPL----PKYVS 372 (726)
Q Consensus 300 ~~~~~~~~~~v~~~~~~~~-l~~~~~~~~~lv~~~~~~--g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~----p~~~~ 372 (726)
.......+.+..+..+.. +..++..++.|++....+ +..+|+.+++..+. ....+.- ...+.
T Consensus 345 -~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~----------~~~~l~~~~~~~~~~~ 413 (723)
T 1xfd_A 345 -NSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF----------NRQCLSCDLVENCTYF 413 (723)
T ss_dssp -CSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC----------CCBCSSTTSSSSCCCC
T ss_pred -CCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC----------CcceecccccCCCCeE
Confidence 211000333332222221 124556678888887776 66778888764321 0011111 11122
Q ss_pred eeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeE-EEEEeeccccccccccccCcccccccccccccccccccccC
Q 004866 373 QIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW-NIIQQQNMLRERTRILYGTASSATISLNAKSGESVNELKSD 451 (726)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (726)
. ..+++++..+++.++++..|..++. +..+++. ..+.......
T Consensus 414 ~----~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~------------------------------- 457 (723)
T 1xfd_A 414 S----ASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLETNEHVK------------------------------- 457 (723)
T ss_dssp E----EEECTTSSEEEEECCSSSSCCEEEE-ETTTCCEEEEEECCHHHH-------------------------------
T ss_pred E----EEECCCCCEEEEEccCCCCCeEEEE-ECCCCCEEEEeccChhhh-------------------------------
Confidence 2 2356789999999999999987664 6655543 2332111000
Q ss_pred CCCccCcCCCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-Cccch--HHHHHHHHCCcEEEE
Q 004866 452 SDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWR--SELKSLLDRGWVVAF 528 (726)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~--~~~~~l~~~G~~v~~ 528 (726)
.++.......++.+.+++.|| +|+++++.|++..+++++|+||++||+++... ...|. ...+.|+++||+|++
T Consensus 458 ---~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~ 533 (723)
T 1xfd_A 458 ---KAINDRQMPKVEYRDIEIDDY-NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVK 533 (723)
T ss_dssp ---HHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEC
T ss_pred ---hhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccccccHHHHHhhcCCEEEEE
Confidence 000112344567788899999 99999999998766778999999999887642 33343 455667779999999
Q ss_pred EccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC----CCceeEEEEe
Q 004866 529 ADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC----PDLFRAVVLE 604 (726)
Q Consensus 529 ~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~ 604 (726)
+|+||+|++|..|.......++...++|+.+++++|.+++.+|++||+|+|+||||++++.++.++ |++|+++|+.
T Consensus 534 ~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~ 613 (723)
T 1xfd_A 534 CDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSAL 613 (723)
T ss_dssp CCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEE
T ss_pred ECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEc
Confidence 999999999988877666666667899999999999998889999999999999999999999999 9999999999
Q ss_pred CCcccccccccCCCCCCChhhhc--ccCCCCChhHHHHHHhcCcccccccCCC-CCeEEEEecCCCCcChHHHHHHHHHH
Q 004866 605 VPFLDATNTLLYPILPLIAADYE--EFGYPGDIDDFHAIRNYSPYDNIQKDVL-YPAVLVTSSFNTRFGVWEAAKWVARV 681 (726)
Q Consensus 605 ~p~~d~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~sp~~~i~~~~~-~P~lli~g~~D~~V~~~~~~~~~~~L 681 (726)
+|+.++.... ..+. .++.|... .+.+...+|..++.+ ++ .|+|++||..|.+||+.++.+++++|
T Consensus 614 ~~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~P~lii~G~~D~~v~~~~~~~~~~~l 681 (723)
T 1xfd_A 614 SPITDFKLYA---------SAFSERYLGLHGLD--NRAYEMTKVAHRVSA-LEEQQFLIIHPTADEKIHFQHTAELITQL 681 (723)
T ss_dssp SCCCCTTSSB---------HHHHHHHHCCCSSC--CSSTTTTCTHHHHTS-CCSCEEEEEEETTCSSSCHHHHHHHHHHH
T ss_pred cCCcchHHhh---------hhccHhhcCCccCC--hhHHHhcChhhHHhh-cCCCCEEEEEeCCCCCcCHhHHHHHHHHH
Confidence 9998865310 1111 12444321 113445677777776 77 69999999999999999999999999
Q ss_pred HhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 682 RESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
++++++ ..+.+++++||+.............+.+||.++|+
T Consensus 682 ~~~~~~---~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 682 IRGKAN---YSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp HHTTCC---CEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred HHCCCC---eEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 998753 12223899999874444455666778899999886
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=231.99 Aligned_cols=239 Identities=13% Similarity=0.073 Sum_probs=180.1
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
+.++++++++ ||.+|+++++.|++. ++.|+||++||+.+.. .. +....+.|+++||+|+.+|+||+|++.
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~---~~~P~vl~~hG~~~~~-~~-~~~~~~~l~~~G~~v~~~d~rG~G~s~---- 194 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP---GPHPAVIMLGGLESTK-EE-SFQMENLVLDRGMATATFDGPGQGEMF---- 194 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS---CCEEEEEEECCSSCCT-TT-THHHHHHHHHTTCEEEEECCTTSGGGT----
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC---CCCCEEEEeCCCCccH-HH-HHHHHHHHHhCCCEEEEECCCCCCCCC----
Confidence 5788999988 899999999998863 5789999988865432 22 334488899999999999999998751
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCC
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 622 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 622 (726)
..........+|+.+++++|.+++.++++||+|+|+|+||+++++++.+ |++|+++|+. |+.++......-...+.
T Consensus 195 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~~~~~~~ 270 (386)
T 2jbw_A 195 --EYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDLETPLTK 270 (386)
T ss_dssp --TTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGGSCHHHH
T ss_pred --CCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHhccHHHH
Confidence 1122233445678999999999998999999999999999999999998 9999999999 99987653321000000
Q ss_pred hhhhcccCCCCChhHH-HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHH-HhcCCCCCCCcEEEEcCCC
Q 004866 623 AADYEEFGYPGDIDDF-HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARV-RESTIYDPKRPILLNLTTD 700 (726)
Q Consensus 623 ~~~~~~~g~~~~~~~~-~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~g 700 (726)
......+|.+...+.. +.+..++|..++.+ ++.|+|+++|..|. ||+.++.+++++| +. . ..+++++++|
T Consensus 271 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~-~-----~~~~~~~~~g 342 (386)
T 2jbw_A 271 ESWKYVSKVDTLEEARLHVHAALETRDVLSQ-IACPTYILHGVHDE-VPLSFVDTVLELVPAE-H-----LNLVVEKDGD 342 (386)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHTCCTTTGGG-CCSCEEEEEETTSS-SCTHHHHHHHHHSCGG-G-----EEEEEETTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHhCChhhhhcc-cCCCEEEEECCCCC-CCHHHHHHHHHHhcCC-C-----cEEEEeCCCC
Confidence 1112235554434455 67788999988887 89999999999999 9999999999999 64 2 1233379999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 701 IVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 701 H~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|+.. .........+.+||.++|+
T Consensus 343 H~~~--~~~~~~~~~i~~fl~~~l~ 365 (386)
T 2jbw_A 343 HCCH--NLGIRPRLEMADWLYDVLV 365 (386)
T ss_dssp GGGG--GGTTHHHHHHHHHHHHHHT
T ss_pred cCCc--cchHHHHHHHHHHHHHhcC
Confidence 9653 2334556667899999885
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=220.31 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=178.8
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
...+.++.+++++.||.+|+++++.|++. +++.|+||++||+.+.. .+......|+++||+|+.+|+||+|+++.
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~---~~~~~~~~l~~~G~~v~~~d~rG~g~s~~ 137 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSGWL 137 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCSSS
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCC---CCchhhcchhhCCCEEEEecCCCCCCccc
Confidence 45678999999999999999999999863 45789999999975543 23344567889999999999999996643
Q ss_pred cccccc-----------------cccCC----CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCce
Q 004866 540 KWHHDG-----------------RRTKK----LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598 (726)
Q Consensus 540 ~~~~~~-----------------~~~~~----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f 598 (726)
...... ..... ...++|+.+++++|.+++.+|++||+|+|+|+||++++.++.++| .+
T Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~v 216 (337)
T 1vlq_A 138 KGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KA 216 (337)
T ss_dssp CCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SC
T ss_pred CCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-Cc
Confidence 210000 00000 135889999999999998889999999999999999999999988 48
Q ss_pred eEEEEeCCccccccccc--CCCCCCChhhhccc--CCCCC-hhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHH
Q 004866 599 RAVVLEVPFLDATNTLL--YPILPLIAADYEEF--GYPGD-IDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 599 ~a~v~~~p~~d~~~~~~--~~~~~~~~~~~~~~--g~~~~-~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
+++|+.+|+++....+. ....+.. ...++ ..+.. ...+..+..++|...+.+ ++.|+|+++|..|..||+.+
T Consensus 217 ~~~vl~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~lii~G~~D~~~p~~~ 293 (337)
T 1vlq_A 217 KALLCDVPFLCHFRRAVQLVDTHPYA--EITNFLKTHRDKEEIVFRTLSYFDGVNFAAR-AKIPALFSVGLMDNICPPST 293 (337)
T ss_dssp CEEEEESCCSCCHHHHHHHCCCTTHH--HHHHHHHHCTTCHHHHHHHHHTTCHHHHHTT-CCSCEEEEEETTCSSSCHHH
T ss_pred cEEEECCCcccCHHHHHhcCCCcchH--HHHHHHHhCchhHHHHHHhhhhccHHHHHHH-cCCCEEEEeeCCCCCCCchh
Confidence 99999999665332211 1111111 11111 22322 334555667788887776 88999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.+++++|+.. ..+.+++++||++.. .+....+++||.++|+
T Consensus 294 ~~~~~~~l~~~------~~~~~~~~~gH~~~~----~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 294 VFAAYNYYAGP------KEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 335 (337)
T ss_dssp HHHHHHHCCSS------EEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCC------cEEEEcCCCCCCCcc----hhhHHHHHHHHHHHHh
Confidence 99999998752 123338999998533 2345667899998875
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=211.30 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=143.3
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
....|+......||.+|+++++.|++. ++.|+||++||+.+....+.+....+.|+++||+|+.+|+||+|+++...
T Consensus 27 ~~~~e~~~~~~~dG~~i~g~l~~P~~~---~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~ 103 (259)
T 4ao6_A 27 LSVQERGFSLEVDGRTVPGVYWSPAEG---SSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQ 103 (259)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEESSS---CCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC--------
T ss_pred CCceEEEEEEeeCCeEEEEEEEeCCCC---CCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcc
Confidence 344555555568999999999999763 46799999999887665566778889999999999999999999776543
Q ss_pred cccccccCC---------------CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 542 HHDGRRTKK---------------LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 542 ~~~~~~~~~---------------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
......... ...+.|+.+++++|.. .+|++||+++|+|+||++++.++...|+ ++|+|+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~--~~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~ 180 (259)
T 4ao6_A 104 AGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEA--EEGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLM 180 (259)
T ss_dssp -----CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHH--HHCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESC
T ss_pred cccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhh--ccCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEecc
Confidence 322111110 1134577788888864 4689999999999999999999998776 556665443
Q ss_pred cccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCC
Q 004866 607 FLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTI 686 (726)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~ 686 (726)
..+.. . . .++...+.+ ++.|+|++||..|.+||+.++.+++++|....
T Consensus 181 ~~~~~---------------------~---~------~~~~~~a~~-i~~P~Li~hG~~D~~vp~~~~~~l~~al~~~~- 228 (259)
T 4ao6_A 181 GVEGV---------------------N---G------EDLVRLAPQ-VTCPVRYLLQWDDELVSLQSGLELFGKLGTKQ- 228 (259)
T ss_dssp CTTST---------------------T---H------HHHHHHGGG-CCSCEEEEEETTCSSSCHHHHHHHHHHCCCSS-
T ss_pred ccccc---------------------c---c------cchhhhhcc-CCCCEEEEecCCCCCCCHHHHHHHHHHhCCCC-
Confidence 22110 0 0 022333554 88999999999999999999999999996533
Q ss_pred CCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 687 YDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 687 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.+.++++ +|..... .+..+..++||.++|.
T Consensus 229 ----k~l~~~~G-~H~~~p~---~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 229 ----KTLHVNPG-KHSAVPT---WEMFAGTVDYLDQRLK 259 (259)
T ss_dssp ----EEEEEESS-CTTCCCH---HHHTHHHHHHHHHHCC
T ss_pred ----eEEEEeCC-CCCCcCH---HHHHHHHHHHHHHhcC
Confidence 23333555 6754332 3445667899999984
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-22 Score=196.53 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=165.0
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
.+..+.+.+++ +|..++++++.|++. .++.|+||++||..+. ...+......|+++||.|+++|+||+|+....+
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~p~~~--~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~~ 77 (241)
T 3f67_A 3 AIIAGETSIPS-QGENMPAYHARPKNA--DGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEY 77 (241)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEETTC--CSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCGGGC
T ss_pred cceeeeEEEec-CCcceEEEEecCCCC--CCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCCCch
Confidence 35678888988 899999999999853 3568999999996654 355677788999999999999999988765443
Q ss_pred cccccc-------cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 542 HHDGRR-------TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 542 ~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
...... .......+|+.+++++|.+++ +|++||+++|+|+||.+++.++.++|+ ++++|+..|......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~~-- 153 (241)
T 3f67_A 78 HDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGEK-- 153 (241)
T ss_dssp CSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCCC--
T ss_pred hhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCCC--
Confidence 221100 011235789999999999887 889999999999999999999999888 567776555321100
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
.. +...+|...+.+ ++.|+|+++|..|..||+.++.+++++|++++.+ ..+.
T Consensus 154 ------------~~------------~~~~~~~~~~~~-~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~---~~~~ 205 (241)
T 3f67_A 154 ------------SL------------NSPKHPVDIAVD-LNAPVLGLYGAKDASIPQDTVETMRQALRAANAT---AEIV 205 (241)
T ss_dssp ------------CS------------SSCCCHHHHGGG-CCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCS---EEEE
T ss_pred ------------cc------------CCccCHHHhhhh-cCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCC---cEEE
Confidence 00 112244444555 7889999999999999999999999999987743 1222
Q ss_pred EEcCCCCCCCc-------hhhHHHHHHHHHHHHHHh
Q 004866 695 LNLTTDIVEEN-------RYLQCKESALETAFLIKM 723 (726)
Q Consensus 695 ~~~~~gH~~~~-------~~~~~~~~~~~~~fl~~~ 723 (726)
.++++||++.. .....+.+..+++||.++
T Consensus 206 ~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 206 VYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp EETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 28999998642 223345566778998753
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=202.40 Aligned_cols=233 Identities=12% Similarity=0.106 Sum_probs=166.5
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC-CCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY-GELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
..+.+.+|..+.+++..|....++++.|+||++|||. .......+......|+++||.|+.+|+||+|+....
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~------ 90 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTNY------ 90 (276)
T ss_dssp EECCCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCCS------
T ss_pred ccccCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCCC------
Confidence 4567789999887655444322346789999999964 223345567788899999999999999999864310
Q ss_pred ccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHc-CCCceeEEEEeCCcccccccccCCCCCCC
Q 004866 547 RTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINC-CPDLFRAVVLEVPFLDATNTLLYPILPLI 622 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 622 (726)
......+.|+.++++++.++. .+|++||+|+|+|+||++++.++.+ .+.+++++|+.+|++++.... ...+
T Consensus 91 -~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~--~~~~-- 165 (276)
T 3hxk_A 91 -NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGW--PSDL-- 165 (276)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSC--SSSS--
T ss_pred -CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhC--Ccch--
Confidence 111246789999999998764 2688999999999999999999987 788999999999998865431 1111
Q ss_pred hhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q 004866 623 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 702 (726)
Q Consensus 623 ~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 702 (726)
.+..+- +. .. ..++|...+.+ +..|+|++||..|..||+.++.+++++|++.+++ ..+.+++++||+
T Consensus 166 --~~~~~~-~~---~~---~~~~~~~~~~~-~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~---~~~~~~~~~~H~ 232 (276)
T 3hxk_A 166 --SHFNFE-IE---NI---SEYNISEKVTS-STPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVP---FEAHFFESGPHG 232 (276)
T ss_dssp --SSSCCC-CS---CC---GGGBTTTTCCT-TSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCC---EEEEEESCCCTT
T ss_pred --hhhhcC-ch---hh---hhCChhhcccc-CCCCEEEEecCCCceeChHHHHHHHHHHHHcCCC---eEEEEECCCCCC
Confidence 011111 11 11 45678877776 7899999999999999999999999999998743 122228999997
Q ss_pred CCc-hh-----------hHHHHHHHHHHHHHHhh
Q 004866 703 EEN-RY-----------LQCKESALETAFLIKMM 724 (726)
Q Consensus 703 ~~~-~~-----------~~~~~~~~~~~fl~~~l 724 (726)
+.. .. ...+......+||.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 266 (276)
T 3hxk_A 233 VSLANRTTAPSDAYCLPSVHRWVSWASDWLERQI 266 (276)
T ss_dssp CTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHH
T ss_pred ccccCccccccccccCchHHHHHHHHHHHHHhCc
Confidence 653 21 22334455679998875
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=204.32 Aligned_cols=248 Identities=14% Similarity=0.117 Sum_probs=173.6
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
...+..+.+.+++.||.+|+++++.|++ .++.|+||++||+.+.. ...|. ....|+++||+|+.+|+||+|+++.
T Consensus 51 ~~~~~~~~~~~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~-~~~~~-~~~~l~~~g~~v~~~d~rg~g~s~~ 125 (318)
T 1l7a_A 51 ADGVKVYRLTYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASY-DGEIH-EMVNWALHGYATFGMLVRGQQRSED 125 (318)
T ss_dssp CSSEEEEEEEEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCS-GGGHH-HHHHHHHTTCEEEEECCTTTSSSCC
T ss_pred CCCeEEEEEEEEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCCC-CCCcc-cccchhhCCcEEEEecCCCCCCCCC
Confidence 3466788999999999999999999976 35789999999987640 12333 3347889999999999999998876
Q ss_pred ccccccccc-----CC---------CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 540 KWHHDGRRT-----KK---------LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 540 ~~~~~~~~~-----~~---------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
.+...+... .+ ...++|+.+++++|.++..+|++||+++|+|+||.+++.++.++|+ ++++|+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~~ 204 (318)
T 1l7a_A 126 TSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADY 204 (318)
T ss_dssp CCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEES
T ss_pred cccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEecC
Confidence 543211111 11 1348999999999999888899999999999999999999998887 56777788
Q ss_pred Cccccccccc--CCCCCCCh-hhh-cccCCCC-ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHH
Q 004866 606 PFLDATNTLL--YPILPLIA-ADY-EEFGYPG-DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVAR 680 (726)
Q Consensus 606 p~~d~~~~~~--~~~~~~~~-~~~-~~~g~~~-~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~ 680 (726)
|+++...... ....++.. ..+ ..++.+. .......+..+++...+.+ ++.|+|+++|..|..||+.++.+++++
T Consensus 205 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~li~~g~~D~~~~~~~~~~~~~~ 283 (318)
T 1l7a_A 205 PYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADR-VKVPVLMSIGLIDKVTPPSTVFAAYNH 283 (318)
T ss_dssp CCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGG-CCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred CcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhh-CCCCEEEEeccCCCCCCcccHHHHHhh
Confidence 8654222110 11111110 011 1111111 1122334455667776776 789999999999999999999999988
Q ss_pred HHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 681 VRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 681 L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.... .+.+++++||+.. .+....+.+||.++|+
T Consensus 284 l~~~~------~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 284 LETKK------ELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp CCSSE------EEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred cCCCe------eEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 86521 2223799999732 2345667899999885
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-21 Score=200.25 Aligned_cols=233 Identities=14% Similarity=0.088 Sum_probs=166.2
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccchHHHHHHHH-CCcEEEEEccCCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSLLD-RGWVVAFADVRGGGGGG 538 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g 538 (726)
..+..+.+++++.|| .|++++++|++. +.|+||++|||... .....|......|++ +||+|+.+|||+++++.
T Consensus 59 ~~~~~~~~~~~~~~g-~i~~~~~~p~~~----~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~ 133 (326)
T 3ga7_A 59 PSMTTRTCAVPTPYG-DVTTRLYSPQPT----SQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR 133 (326)
T ss_dssp CCCEEEEEEECCTTS-CEEEEEEESSSS----CSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC
T ss_pred CCcceEEEEeecCCC-CeEEEEEeCCCC----CCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence 345669999999999 899999999752 23999999997622 233456777788888 79999999999887642
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCCc------eeEEEEeCCccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPDL------FRAVVLEVPFLD 609 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~~------f~a~v~~~p~~d 609 (726)
....++|+.++++|+.++. .+|++||+|+|+|+||++++.++.++|+. ++++|+.+|+.+
T Consensus 134 -----------~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~ 202 (326)
T 3ga7_A 134 -----------YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYG 202 (326)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCS
T ss_pred -----------CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccc
Confidence 2357899999999999864 46999999999999999999999887764 899999999887
Q ss_pred ccccccCCCCCCChhhhcccCC---CCChhHHHHH-H--------hcCccc-----ccccCCCCCeEEEEecCCCCcChH
Q 004866 610 ATNTLLYPILPLIAADYEEFGY---PGDIDDFHAI-R--------NYSPYD-----NIQKDVLYPAVLVTSSFNTRFGVW 672 (726)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~--------~~sp~~-----~i~~~~~~P~lli~g~~D~~V~~~ 672 (726)
...... ...++. ....+....+ . ..+|+. .+.+ ...|+|++||+.|..| .
T Consensus 203 ~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~li~~G~~D~~~--~ 269 (326)
T 3ga7_A 203 LQDSVS----------RRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTR-DVPPCFIASAEFDPLI--D 269 (326)
T ss_dssp CSCCHH----------HHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSS-CCCCEEEEEETTCTTH--H
T ss_pred cCCChh----------HhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhc-CCCCEEEEecCcCcCH--H
Confidence 543210 001110 0011111111 1 113332 2222 4568999999999887 4
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 673 EAAKWVARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 673 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
++.+++++|+++|++ ..+.++++++|++.. .....+...++.+||.++|+
T Consensus 270 ~~~~~~~~l~~~g~~---~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~ 323 (326)
T 3ga7_A 270 DSRLLHQTLQAHQQP---CEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMK 323 (326)
T ss_dssp HHHHHHHHHHHTTCC---EEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc---EEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhc
Confidence 899999999999854 122228999998743 12345566778999999885
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=222.36 Aligned_cols=255 Identities=14% Similarity=0.152 Sum_probs=177.7
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC----CCC-ccchH-HH---HHHHHCCcEEEEEc
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE----LLD-KRWRS-EL---KSLLDRGWVVAFAD 530 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~----~~~-~~~~~-~~---~~l~~~G~~v~~~d 530 (726)
...+..+.+.+++.||.+|.++++.|++. ++.|+||++||..+. ... ..|.. .. +.|+++||+|+.+|
T Consensus 20 ~~~~~~~~v~i~~~DG~~L~~~~~~P~~~---~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D 96 (615)
T 1mpx_A 20 SNDYIKREVMIPMRDGVKLHTVIVLPKGA---KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 96 (615)
T ss_dssp TCSEEEEEEEEECTTSCEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred cCCCEEEEEEEECCCCCEEEEEEEeCCCC---CCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEEC
Confidence 45778889999999999999999999863 578999999863221 111 12221 22 88999999999999
Q ss_pred cCCCCCCCCccccccc-----ccCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 531 VRGGGGGGKKWHHDGR-----RTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 531 ~RG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
+||+|+++..+..... ..++....+|+.++++||.++ ++.| .||+++|+||||+++++++.++|+.++|+|+.
T Consensus 97 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~ 175 (615)
T 1mpx_A 97 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPE 175 (615)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEec
Confidence 9999999887654321 222337899999999999998 7877 59999999999999999998889999999999
Q ss_pred CCcccccc--cccCCCC-CCC-hhhh---------------------------------------------ccc-CCCCC
Q 004866 605 VPFLDATN--TLLYPIL-PLI-AADY---------------------------------------------EEF-GYPGD 634 (726)
Q Consensus 605 ~p~~d~~~--~~~~~~~-~~~-~~~~---------------------------------------------~~~-g~~~~ 634 (726)
+|+.|+.. .+..... .+. ..++ .++ ..+.
T Consensus 176 ~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 254 (615)
T 1mpx_A 176 SPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAA- 254 (615)
T ss_dssp SCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCS-
T ss_pred CCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCC-
Confidence 99999532 1100000 000 0000 000 0110
Q ss_pred hhHHHHHHhcCcccccccC--CCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-EcCCCCCCCc-----h
Q 004866 635 IDDFHAIRNYSPYDNIQKD--VLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEEN-----R 706 (726)
Q Consensus 635 ~~~~~~~~~~sp~~~i~~~--~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~-----~ 706 (726)
.-+++++.||+.+++ + ++.|+|++||..|.+ +..++.+++++|++++++. ....++ .+. +|+... .
T Consensus 255 --~d~~w~~~Sp~~~~~-~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~-~~~~lvigp~-~H~~~~~~~~~~ 328 (615)
T 1mpx_A 255 --YDAFWQEQALDKVMA-RTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRN-TLNYLVMGPW-RHSQVNYDGSAL 328 (615)
T ss_dssp --SCHHHHTTCHHHHHH-TSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTS-SSEEEEEESC-CTTGGGSCCSEE
T ss_pred --cChhhhhcChhhhhh-ccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCC-cCCEEEECCC-CCCCcccccccc
Confidence 013466788987776 4 799999999999987 8889999999999987431 012222 455 786511 0
Q ss_pred -------h-hHHHHHHHHHHHHHHhhc
Q 004866 707 -------Y-LQCKESALETAFLIKMME 725 (726)
Q Consensus 707 -------~-~~~~~~~~~~~fl~~~l~ 725 (726)
. ........+++||.++|.
T Consensus 329 ~~~~f~~~~~~~~~~~~~~~wfd~~Lk 355 (615)
T 1mpx_A 329 GALNFEGDTARQFRHDVLRPFFDQYLV 355 (615)
T ss_dssp TTEECSSCHHHHHHHHTHHHHHHHHHS
T ss_pred CccccCcccchhhhhhHHHHHHHHHhc
Confidence 1 112224557899999985
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=208.92 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=167.2
Q ss_pred eEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch----------HHHHHHHHCCcEEEEEccC
Q 004866 464 SCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR----------SELKSLLDRGWVVAFADVR 532 (726)
Q Consensus 464 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~----------~~~~~l~~~G~~v~~~d~R 532 (726)
..+.+.+.+. ||..++++++.|++..+.+++|+||++||+.+........ ....+....|+.|+.+|+|
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~ 222 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCP 222 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCC
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCC
Confidence 4677889998 9999999999999866678899999999976543221110 0122344678999999999
Q ss_pred CCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc
Q 004866 533 GGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612 (726)
Q Consensus 533 G~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 612 (726)
|++++|..|...+........+.|+.+++++++++..+|++||+|+|+|+||++++.++.++|++|+++|+.+|..+..
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~~- 301 (380)
T 3doh_A 223 PNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS- 301 (380)
T ss_dssp TTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGG-
T ss_pred CCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCChh-
Confidence 9999999888766666667789999999999998877899999999999999999999999999999999999875210
Q ss_pred cccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCc
Q 004866 613 TLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRP 692 (726)
Q Consensus 613 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 692 (726)
.+......|+|++||..|..||+.++.+++++|++++++ ..
T Consensus 302 ------------------------------------~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~---~~ 342 (380)
T 3doh_A 302 ------------------------------------KVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGK---VR 342 (380)
T ss_dssp ------------------------------------GGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCC---EE
T ss_pred ------------------------------------hhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCc---eE
Confidence 111112379999999999999999999999999998853 11
Q ss_pred EEEEcCC---CCCCCchhhHHHHHH--HHHHHHHHhh
Q 004866 693 ILLNLTT---DIVEENRYLQCKESA--LETAFLIKMM 724 (726)
Q Consensus 693 ~~~~~~~---gH~~~~~~~~~~~~~--~~~~fl~~~l 724 (726)
+.+++++ +|++........... ..++||.++.
T Consensus 343 ~~~~~~~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~~ 379 (380)
T 3doh_A 343 YTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQS 379 (380)
T ss_dssp EEEECTTHHHHTTCCTTCTHHHHHTCHHHHHHHHTCC
T ss_pred EEEecCCcccCCCCCCchhHHHhcCCHHHHHHHHhhc
Confidence 2228888 333222112222223 6789998763
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-21 Score=195.97 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=163.3
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCC---CCCCCCccEEEEEcCCCC-CCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPK---YKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~---~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
..+.+.+ ..+|..+++.+++|+. ....++.|+||++|||.. ......|......|+++||.|+.+|+||+|..+.
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~ 81 (277)
T 3bxp_A 3 QVEQRTL-NTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQS 81 (277)
T ss_dssp EEEEEEE-CSTTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTCC
T ss_pred ceEEEEe-ccCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCCc
Confidence 4566677 4577889999999973 123467899999999532 2233456777888999999999999999874322
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--------------CCceeEEE
Q 004866 540 KWHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--------------PDLFRAVV 602 (726)
Q Consensus 540 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--------------p~~f~a~v 602 (726)
.....+.|+.+++++|.++. .+|++||+|+|+|+||++++.++.++ |.+++++|
T Consensus 82 ---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v 152 (277)
T 3bxp_A 82 ---------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAII 152 (277)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEE
T ss_pred ---------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEE
Confidence 22356889999999998763 26788999999999999999999875 77899999
Q ss_pred EeCCcccccccccCCCCCCChhhh-cccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHH
Q 004866 603 LEVPFLDATNTLLYPILPLIAADY-EEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARV 681 (726)
Q Consensus 603 ~~~p~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L 681 (726)
+.+|+.++...+ ....... ..++ .+...+|...+.+ +..|+|+++|+.|..||+.++.+++++|
T Consensus 153 ~~~p~~~~~~~~-----~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~P~lii~G~~D~~vp~~~~~~~~~~l 217 (277)
T 3bxp_A 153 LGYPVIDLTAGF-----PTTSAARNQITT---------DARLWAAQRLVTP-ASKPAFVWQTATDESVPPINSLKYVQAM 217 (277)
T ss_dssp EESCCCBTTSSS-----SSSHHHHHHHCS---------CGGGSBGGGGCCT-TSCCEEEEECTTCCCSCTHHHHHHHHHH
T ss_pred EeCCcccCCCCC-----CCccccchhccc---------hhhhcCHhhcccc-CCCCEEEEeeCCCCccChHHHHHHHHHH
Confidence 999998754211 1100000 0011 1234577777765 6789999999999999999999999999
Q ss_pred HhcCCCCCCCcEEEEcCCCCCCCc-h-------------hhHHHHHHHHHHHHHHhh
Q 004866 682 RESTIYDPKRPILLNLTTDIVEEN-R-------------YLQCKESALETAFLIKMM 724 (726)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~-~-------------~~~~~~~~~~~~fl~~~l 724 (726)
++++.+ ..+.+++++||++.. . ....+....+.+||.++.
T Consensus 218 ~~~~~~---~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 218 LQHQVA---TAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHTTCC---EEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCe---EEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 998743 122227899996543 2 123444566789998763
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-20 Score=198.84 Aligned_cols=244 Identities=11% Similarity=0.014 Sum_probs=162.8
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEE-cCCC--------------------CCCCCccEEEEEcCCCCCC---CCccchHH
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIY-SPKY--------------------KKENQNPGLLHGHGAYGEL---LDKRWRSE 515 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~-p~~~--------------------~~~~~~P~vl~~hGg~~~~---~~~~~~~~ 515 (726)
...+..+.+.+.+.|| +.+.++. |++. ..+++.|+||++|||.... ....|...
T Consensus 59 ~~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~ 136 (365)
T 3ebl_A 59 LEGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSL 136 (365)
T ss_dssp BTTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHH
T ss_pred CCCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHH
Confidence 4567889999999999 6666776 7653 2346789999999975322 22235667
Q ss_pred HHHHHHC-CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcC----CCCCC-cEEEEEecccHHHHHH
Q 004866 516 LKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE----IVKEH-KLAGWGYSAGGLLVAA 589 (726)
Q Consensus 516 ~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-ri~i~G~S~GG~l~~~ 589 (726)
...|+++ ||+|+.+|||++++.. ....++|+.++++||.++. .+|++ ||+|+|+||||++++.
T Consensus 137 ~~~la~~~g~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~ 205 (365)
T 3ebl_A 137 CRRFVKLSKGVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHH 205 (365)
T ss_dssp HHHHHHHHTSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHH
T ss_pred HHHHHHHCCCEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHH
Confidence 7888886 9999999999877532 2356899999999999765 57999 9999999999999999
Q ss_pred HHHcCCC---ceeEEEEeCCcccccccccC----CCCCC-Ch---hh-hccc-CCCCChhHHHHHHhcCcccccccCCC-
Q 004866 590 AINCCPD---LFRAVVLEVPFLDATNTLLY----PILPL-IA---AD-YEEF-GYPGDIDDFHAIRNYSPYDNIQKDVL- 655 (726)
Q Consensus 590 ~~~~~p~---~f~a~v~~~p~~d~~~~~~~----~~~~~-~~---~~-~~~~-g~~~~~~~~~~~~~~sp~~~i~~~~~- 655 (726)
++.+.++ .++++|+.+|+++....... ...+. .. .+ +..+ +...... ....+|+......++
T Consensus 206 ~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~l~~ 281 (365)
T 3ebl_A 206 VAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRD----HPACNPFGPNGRRLGG 281 (365)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTT----STTTCTTSTTCCCCTT
T ss_pred HHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCC----CcccCCCCCcchhhcc
Confidence 9987665 79999999999886431100 00000 00 00 0000 0000000 011234321111133
Q ss_pred ---CCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc---hhhHHHHHHHHHHHHHHhhc
Q 004866 656 ---YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN---RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 656 ---~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~~l~ 725 (726)
.|+|++||+.|..+ .++.+++++|+++|++ ..+.++++++|++.. .....+....+.+||.+++.
T Consensus 282 ~~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~g~~---v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~ 352 (365)
T 3ebl_A 282 LPFAKSLIIVSGLDLTC--DRQLAYADALREDGHH---VKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLY 352 (365)
T ss_dssp SCCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCC---EEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCEEEEEcCcccch--hHHHHHHHHHHHCCCC---EEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhh
Confidence 47888899889544 4678999999998853 122228999998652 34556667788999999875
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=219.03 Aligned_cols=252 Identities=13% Similarity=0.152 Sum_probs=176.5
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC------CCc-cchH---HH-HHHHHCCcEEEE
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL------LDK-RWRS---EL-KSLLDRGWVVAF 528 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~------~~~-~~~~---~~-~~l~~~G~~v~~ 528 (726)
...+..+.+++++.||.+|.++++.|++. ++.|+||+.|| ++.. ... .|.. .. +.|+++||+|+.
T Consensus 32 ~~~~~~~~v~i~~~DG~~L~~~l~~P~~~---~~~PvIl~~hp-yg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~ 107 (652)
T 2b9v_A 32 QRDYIKREVMVPMRDGVKLYTVIVIPKNA---RNAPILLTRTP-YNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF 107 (652)
T ss_dssp CCSEEEEEEEEECTTSCEEEEEEEEETTC---CSEEEEEEEES-SCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred cCCcEEEEEEEECCCCcEEEEEEEecCCC---CCccEEEEECC-CCCCcccccccccccccccccchHHHHHhCCCEEEE
Confidence 34577889999999999999999999863 57899998885 2211 100 1111 12 889999999999
Q ss_pred EccCCCCCCCCccccccc-----ccCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEE
Q 004866 529 ADVRGGGGGGKKWHHDGR-----RTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602 (726)
Q Consensus 529 ~d~RG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 602 (726)
+|+||+|+++..|..... ..++....+|+.++++||.++ ++.| .||+++|+||||+++++++.++|+.|+|+|
T Consensus 108 ~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v 186 (652)
T 2b9v_A 108 QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAA 186 (652)
T ss_dssp EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEE
T ss_pred EecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEE
Confidence 999999999988765421 222347899999999999999 8888 599999999999999999988899999999
Q ss_pred EeCCcccccc--cccCCC-CCCC-hhhh---------------------------------------------cc-cCCC
Q 004866 603 LEVPFLDATN--TLLYPI-LPLI-AADY---------------------------------------------EE-FGYP 632 (726)
Q Consensus 603 ~~~p~~d~~~--~~~~~~-~~~~-~~~~---------------------------------------------~~-~g~~ 632 (726)
+.+|+.|+.. .+.... ..+. ..++ .+ .+.|
T Consensus 187 ~~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (652)
T 2b9v_A 187 PESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHP 266 (652)
T ss_dssp EEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCC
T ss_pred ecccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCC
Confidence 9999999753 110000 0000 0010 00 0111
Q ss_pred CChhHHHHHHhcCcccccccC--CCCCeEEEEecCCCCcChHHHHHHHHHHHhcC--CCCCCCcEEEEcCCCCCCCc---
Q 004866 633 GDIDDFHAIRNYSPYDNIQKD--VLYPAVLVTSSFNTRFGVWEAAKWVARVREST--IYDPKRPILLNLTTDIVEEN--- 705 (726)
Q Consensus 633 ~~~~~~~~~~~~sp~~~i~~~--~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~gH~~~~--- 705 (726)
. .-+++++.||+.+++ + ++.|+|+|||..|.+ +..++.+++++|++++ ++ ..+++.+ .+|+...
T Consensus 267 ~---~d~yw~~~Sp~~~~~-~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~---~~lvigp-~~H~~~~~~~ 337 (652)
T 2b9v_A 267 A---YDAFWQGQALDKILA-QRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAP---NTLVMGP-WRHSGVNYNG 337 (652)
T ss_dssp S---SSHHHHTTCHHHHHH-HHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSC---EEEEEES-CCTTGGGSCC
T ss_pred C---CChHHhcCChhhhhh-cCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCC---CEEEECC-CCCCCccccc
Confidence 1 013356778887665 4 789999999999987 6679999999999986 43 2222244 4797511
Q ss_pred --h-------h-hHHHHHHHHHHHHHHhhc
Q 004866 706 --R-------Y-LQCKESALETAFLIKMME 725 (726)
Q Consensus 706 --~-------~-~~~~~~~~~~~fl~~~l~ 725 (726)
. . ........+++||.++|.
T Consensus 338 ~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lk 367 (652)
T 2b9v_A 338 STLGPLEFEGDTAHQYRRDVFRPFFDEYLK 367 (652)
T ss_dssp SEETTEECSSCHHHHHHHHTHHHHHHHHHS
T ss_pred ccCCccccccccchhhhhhHHHHHHHHHhC
Confidence 0 0 112224567899999985
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=202.35 Aligned_cols=243 Identities=19% Similarity=0.221 Sum_probs=171.2
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
..+..+.+++++.||.+|+++++.|++ .++.|+||++||+.+.. ..|.... .++++||+|+.+|+||+|+++..
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~--~~~~~~~-~~~~~G~~v~~~D~rG~g~s~~~ 151 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNS--GDWNDKL-NYVAAGFTVVAMDVRGQGGQSQD 151 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCS--CCSGGGH-HHHTTTCEEEEECCTTSSSSCCC
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCC--CChhhhh-HHHhCCcEEEEEcCCCCCCCCCC
Confidence 467889999999999999999999986 35789999999986654 3344333 67799999999999999987654
Q ss_pred ccccc------cccCCC----------CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 541 WHHDG------RRTKKL----------NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 541 ~~~~~------~~~~~~----------~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
..... ....+. ..++|+.++++++..+..+|++||+|+|+|+||.+++.++.++|+ ++++|+.
T Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl~ 230 (346)
T 3fcy_A 152 VGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVSE 230 (346)
T ss_dssp CCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEEE
T ss_pred CcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEEC
Confidence 32110 000111 136999999999998888899999999999999999999999998 9999999
Q ss_pred CCcccccccccCCC---CCCC-hhhhcccCCC---CChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHH
Q 004866 605 VPFLDATNTLLYPI---LPLI-AADYEEFGYP---GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKW 677 (726)
Q Consensus 605 ~p~~d~~~~~~~~~---~~~~-~~~~~~~g~~---~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~ 677 (726)
+|+++......... .+.. ...+..+..| .....+..+..+++...+.+ ++.|+|+++|..|..||+.++.++
T Consensus 231 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-i~~P~lii~G~~D~~~~~~~~~~~ 309 (346)
T 3fcy_A 231 YPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKR-IKGDVLMCVGLMDQVCPPSTVFAA 309 (346)
T ss_dssp SCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGG-CCSEEEEEEETTCSSSCHHHHHHH
T ss_pred CCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHh-cCCCEEEEeeCCCCcCCHHHHHHH
Confidence 99765332111111 0000 0011111112 11233444555566666665 889999999999999999999888
Q ss_pred HHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 678 VARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 678 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
++++.. . ..+.+++++||++.. +....+.+||.+
T Consensus 310 ~~~~~~-~-----~~~~~~~~~gH~~~~-----~~~~~i~~fl~~ 343 (346)
T 3fcy_A 310 YNNIQS-K-----KDIKVYPDYGHEPMR-----GFGDLAMQFMLE 343 (346)
T ss_dssp HTTCCS-S-----EEEEEETTCCSSCCT-----THHHHHHHHHHT
T ss_pred HHhcCC-C-----cEEEEeCCCCCcCHH-----HHHHHHHHHHHH
Confidence 887764 1 123338999998651 224456788865
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=206.51 Aligned_cols=246 Identities=11% Similarity=0.047 Sum_probs=158.6
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCC-CCCCCccEEEEEcCCCCCCCC---ccchHHHHHHH-HCCcEEEEEccCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKY-KKENQNPGLLHGHGAYGELLD---KRWRSELKSLL-DRGWVVAFADVRGGG 535 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~-~~~~~~P~vl~~hGg~~~~~~---~~~~~~~~~l~-~~G~~v~~~d~RG~g 535 (726)
..+..+.+.+.+ |..+.+.++.|++. ..+++.|+||++|||...... ..|......|+ ++||+|+.+|+||++
T Consensus 51 ~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~ 128 (338)
T 2o7r_A 51 SPVLTKDLALNP--LHNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAP 128 (338)
T ss_dssp CSEEEEEEEEET--TTTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred CCEEEEEEEecC--CCCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 457888898886 44577778888764 345678999999997633221 22667778888 789999999999987
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHHcC------CCCCCcEEEEEecccHHHHHHHHHcCCC--------ceeEE
Q 004866 536 GGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE------IVKEHKLAGWGYSAGGLLVAAAINCCPD--------LFRAV 601 (726)
Q Consensus 536 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~------~~d~~ri~i~G~S~GG~l~~~~~~~~p~--------~f~a~ 601 (726)
+.. ....++|+.++++||.++. .+|++|++|+|+|+||.+++.++.++|+ +++++
T Consensus 129 ~~~-----------~~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~ 197 (338)
T 2o7r_A 129 EHR-----------LPAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGL 197 (338)
T ss_dssp TTC-----------TTHHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEE
T ss_pred CCC-----------CchHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEE
Confidence 641 2357899999999999763 2678999999999999999999998888 89999
Q ss_pred EEeCCccccccccc----CCCCCC-Ch---hh-hcc-c--CCCCChhHHHHHHhcCcc---cccccCCCCCeEEEEecCC
Q 004866 602 VLEVPFLDATNTLL----YPILPL-IA---AD-YEE-F--GYPGDIDDFHAIRNYSPY---DNIQKDVLYPAVLVTSSFN 666 (726)
Q Consensus 602 v~~~p~~d~~~~~~----~~~~~~-~~---~~-~~~-~--g~~~~~~~~~~~~~~sp~---~~i~~~~~~P~lli~g~~D 666 (726)
|+.+|+++...... ....+. .. .+ +.. + +...+......+...+|+ ..+.+ +..|+|+++|+.|
T Consensus 198 vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~P~Lvi~G~~D 276 (338)
T 2o7r_A 198 VLDEPGFGGSKRTGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRS-LGWRVMVVGCHGD 276 (338)
T ss_dssp EEESCCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHH-HTCEEEEEEETTS
T ss_pred EEECCccCCCcCChhhhccCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcC-CCCCEEEEECCCC
Confidence 99999887543110 000000 00 00 000 0 000000000000001111 11222 3458999999999
Q ss_pred CCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHHhhc
Q 004866 667 TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 667 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~ 725 (726)
..|+ ++.+++++|++++.+ ..+.+++++||++.. .....+....+.+||.++++
T Consensus 277 ~~~~--~~~~~~~~l~~~~~~---~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~ 332 (338)
T 2o7r_A 277 PMID--RQMELAERLEKKGVD---VVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCT 332 (338)
T ss_dssp TTHH--HHHHHHHHHHHTTCE---EEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC----
T ss_pred cchH--HHHHHHHHHHHCCCc---EEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhcc
Confidence 8886 568899999988742 112228999997643 23334556677899988764
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=199.39 Aligned_cols=235 Identities=11% Similarity=0.051 Sum_probs=165.7
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCC---CCCCCccEEEEEcCCCC-CCCCccchHHHHHHHHCCcEEEEEccCCCCCC
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKY---KKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~---~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~ 537 (726)
..+.+.+.+.+.+|..+.+.++ |+.. ..+++.|+||++|||.. ......|......|+++||.|+.+|+||+++.
T Consensus 16 ~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~ 94 (283)
T 3bjr_A 16 YFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQ 94 (283)
T ss_dssp -CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTC
T ss_pred CCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCcc
Confidence 3445567888889988888887 7642 13467899999999652 22234466778889999999999999998875
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCCc-------------eeEE
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPDL-------------FRAV 601 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~~-------------f~a~ 601 (726)
+ ........|+.++++|+.+.. .+|+++|+|+|+|+||.+++.++.++|++ ++++
T Consensus 95 ~---------~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (283)
T 3bjr_A 95 Q---------PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNV 165 (283)
T ss_dssp S---------SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSE
T ss_pred c---------cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEE
Confidence 3 112346789999999998763 36888999999999999999999999987 8999
Q ss_pred EEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHH
Q 004866 602 VLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARV 681 (726)
Q Consensus 602 v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L 681 (726)
|+.+|+.++...+.. ....+..+ +..+...+|...+.+ +..|+|+++|..|..||+.++.+++++|
T Consensus 166 v~~~p~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~~~~~~~~-~~~P~lii~G~~D~~~p~~~~~~~~~~l 231 (283)
T 3bjr_A 166 VLGYPVISPLLGFPK-----DDATLATW--------TPTPNELAADQHVNS-DNQPTFIWTTADDPIVPATNTLAYATAL 231 (283)
T ss_dssp EEESCCCCTTSBC-------------CC--------CCCGGGGCGGGSCCT-TCCCEEEEEESCCTTSCTHHHHHHHHHH
T ss_pred EEcCCcccccccccc-----ccchHHHH--------HHHhHhcCHHHhccC-CCCCEEEEEcCCCCCCChHHHHHHHHHH
Confidence 999998875422100 00000000 001234577777765 7889999999999999999999999999
Q ss_pred HhcCCCCCCCcEEEEcCCCCCCCc-hh-----------hHHHHHHHHHHHHHHh
Q 004866 682 RESTIYDPKRPILLNLTTDIVEEN-RY-----------LQCKESALETAFLIKM 723 (726)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~-~~-----------~~~~~~~~~~~fl~~~ 723 (726)
+..+.+ ..+.+++++||++.. .. ...+......+||.++
T Consensus 232 ~~~g~~---~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 232 ATAKIP---YELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHTTCC---EEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHCCCC---eEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 998743 122228999996543 21 1133445667888764
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=194.17 Aligned_cols=235 Identities=16% Similarity=0.057 Sum_probs=165.7
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC-CCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY-GELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGG 538 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~-~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g 538 (726)
..+..+.+++++.||..|+++++.|++ ++.|+||++|||. .......|......|+. .||+|+.+|||++++..
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~ 131 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP 131 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Confidence 456788999999999999999999875 4689999999953 33334557777788885 59999999999887642
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCccccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDAT 611 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~ 611 (726)
....++|+.++++|+.++ -.+|++||+|+|+|+||.+++.++.++++ .++++++.+|++|..
T Consensus 132 -----------~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 200 (317)
T 3qh4_A 132 -----------YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDR 200 (317)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSS
T ss_pred -----------CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCC
Confidence 235789999999999986 34689999999999999999999887655 489999999998864
Q ss_pred ccccCCCCCCChhhhcccCC--CCChhHH----HHHH-------hcCcccccccCCCCCeEEEEecCCCCcChHHHHHHH
Q 004866 612 NTLLYPILPLIAADYEEFGY--PGDIDDF----HAIR-------NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWV 678 (726)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~g~--~~~~~~~----~~~~-------~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~ 678 (726)
... .+.++.. ....... ..+. ..+|.....-..-.|+++++|+.|..++ ++.+++
T Consensus 201 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~lpP~li~~G~~D~~~~--~~~~~a 268 (317)
T 3qh4_A 201 PTA----------SRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQLAGLPATLITCGEIDPFRD--EVLDYA 268 (317)
T ss_dssp CCH----------HHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGCSCCTTCCCEEEEEEEESTTHH--HHHHHH
T ss_pred CCc----------CHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCcccccCCCCceeEEecCcCCCch--hHHHHH
Confidence 110 0011100 0111111 1111 1233322111112489999999998765 889999
Q ss_pred HHHHhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 679 ARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 679 ~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
++|++++++ ..+.++++++|++.. .....+......+||.++|+
T Consensus 269 ~~l~~~g~~---~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 269 QRLLGAGVS---TELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHTTCC---EEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCC---EEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 999999854 122228999998542 23445556677899999886
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=182.58 Aligned_cols=207 Identities=9% Similarity=0.035 Sum_probs=155.4
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC---CCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG---ELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~---~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
+.+.+++.|| +|.++++.|++ ++.|+||++||..+ ......|......|+++||.|+.+|+||+|.+...+.
T Consensus 24 ~~~~~~~~~g-~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~~~ 98 (249)
T 2i3d_A 24 PEVIFNGPAG-RLEGRYQPSKE----KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEFD 98 (249)
T ss_dssp CEEEEEETTE-EEEEEEECCSS----TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCCC
T ss_pred eEEEEECCCc-eEEEEEEcCCC----CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Confidence 3899999999 89998776643 45699999998532 2122334667788999999999999999987644322
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCC
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 622 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 622 (726)
.....++|+.+++++|.++.. ++++++++|+|+||++++.++.++|+ ++++|+.+|..+...
T Consensus 99 ------~~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~---------- 160 (249)
T 2i3d_A 99 ------HGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD---------- 160 (249)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC----------
T ss_pred ------CccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh----------
Confidence 123456999999999988754 77899999999999999999999998 999999998765321
Q ss_pred hhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhc-CCCCCCCcEEEEcCCCC
Q 004866 623 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRES-TIYDPKRPILLNLTTDI 701 (726)
Q Consensus 623 ~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~gH 701 (726)
...+.+ ++.|+|+++|..|..||+.++.++++++... +.. ..+.+++++||
T Consensus 161 ------------------------~~~~~~-~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~H 212 (249)
T 2i3d_A 161 ------------------------FSFLAP-CPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGIL---ITHRTLPGANH 212 (249)
T ss_dssp ------------------------CTTCTT-CCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCC---EEEEEETTCCT
T ss_pred ------------------------hhhhcc-cCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCc---eeEEEECCCCc
Confidence 111233 6789999999999999999999999999863 211 12222799999
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhc
Q 004866 702 VEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 702 ~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.... ........+.+||.+++.
T Consensus 213 ~~~~--~~~~~~~~i~~fl~~~l~ 234 (249)
T 2i3d_A 213 FFNG--KVDELMGECEDYLDRRLN 234 (249)
T ss_dssp TCTT--CHHHHHHHHHHHHHHHHT
T ss_pred cccc--CHHHHHHHHHHHHHHhcC
Confidence 7653 233344556799988763
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=197.97 Aligned_cols=224 Identities=16% Similarity=0.043 Sum_probs=158.2
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHH
Q 004866 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKD 556 (726)
Q Consensus 477 ~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D 556 (726)
.++++++.|++ .++.|+||++||+.+.. +......|+++||+|+.+|+||+|+....+. ....+|
T Consensus 144 ~l~~~l~~P~~---~~~~P~Vv~~hG~~~~~----~~~~a~~La~~Gy~V~a~D~rG~g~~~~~~~--------~~~~~d 208 (422)
T 3k2i_A 144 RVRATLFLPPG---PGPFPGIIDIFGIGGGL----LEYRASLLAGHGFATLALAYYNFEDLPNNMD--------NISLEY 208 (422)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCTTCSC----CCHHHHHHHTTTCEEEEEECSSSTTSCSSCS--------CEETHH
T ss_pred cEEEEEEcCCC---CCCcCEEEEEcCCCcch----hHHHHHHHHhCCCEEEEEccCCCCCCCCCcc--------cCCHHH
Confidence 68999999975 35689999999986642 3455788999999999999999887644322 246899
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc---cC---CCCCCChhh-----
Q 004866 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL---LY---PILPLIAAD----- 625 (726)
Q Consensus 557 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~---~~---~~~~~~~~~----- 625 (726)
+.++++||.++..+|++||+|+|+||||++++.++.++|+ ++++|+.+|........ .. +..+.....
T Consensus 209 ~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
T 3k2i_A 209 FEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAF 287 (422)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEECT
T ss_pred HHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccCc
Confidence 9999999999988899999999999999999999999998 89999988876432100 00 000000000
Q ss_pred ------hcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHH-HHHHHHHHhcCCCCCCCcEEEEcC
Q 004866 626 ------YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEA-AKWVARVRESTIYDPKRPILLNLT 698 (726)
Q Consensus 626 ------~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~ 698 (726)
...+..+... ...++...+.+ ++.|+|+++|+.|..||..+. ..++++|++++++. ..++++++
T Consensus 288 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~-i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~--~~l~~~~g 358 (422)
T 3k2i_A 288 SGLVDIVDIRNALVGG------YKNPSMIPIEK-AQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEK--PQIICYPG 358 (422)
T ss_dssp TSCEECTTCBCCCTTG------GGSTTBCCGGG-CCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCC--CEEEEETT
T ss_pred chhHHHHHHHhhhhhc------ccccccccHHH-CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCC--CEEEEECC
Confidence 0011111110 11223334554 788999999999999999866 68999999988531 12223899
Q ss_pred CCCCCCc---------------------------hhhHHHHHHHHHHHHHHhhc
Q 004866 699 TDIVEEN---------------------------RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 699 ~gH~~~~---------------------------~~~~~~~~~~~~~fl~~~l~ 725 (726)
+||++.. .....+.+..+++||.++|+
T Consensus 359 agH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~ 412 (422)
T 3k2i_A 359 TGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLG 412 (422)
T ss_dssp CCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9998611 13455567788999999985
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=186.90 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=155.3
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc-c-
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD-G- 545 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~-~- 545 (726)
+++++.||.+++++++.|++ ++.|+||++||..+.. ..|......|+++||.|+.+|+||+|..+..+... .
T Consensus 6 ~~~~~~~g~~l~~~~~~p~~----~~~p~vv~~hG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~ 79 (236)
T 1zi8_A 6 ISIQSYDGHTFGALVGSPAK----APAPVIVIAQDIFGVN--AFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDER 79 (236)
T ss_dssp CCEECTTSCEECEEEECCSS----CSEEEEEEECCTTBSC--HHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTCHH
T ss_pred EEEecCCCCeEEEEEECCCC----CCCCEEEEEcCCCCCC--HHHHHHHHHHHhCCcEEEeccccccCCCcccccccchh
Confidence 45788999999998887763 5689999999976643 45677788999999999999999999776532211 0
Q ss_pred ---------cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC
Q 004866 546 ---------RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY 616 (726)
Q Consensus 546 ---------~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~ 616 (726)
.........+|+.+++++|.++..++ ++|+++|+|+||.+++.++.++| ++++++.+|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~------ 150 (236)
T 1zi8_A 80 QREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE------ 150 (236)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG------
T ss_pred hhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc------
Confidence 00011234688899999998776545 69999999999999999999988 8888877763211
Q ss_pred CCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEE
Q 004866 617 PILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLN 696 (726)
Q Consensus 617 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 696 (726)
++...+.+ ++.|+++++|..|..||+.++.++++++++.+ + ..+..+
T Consensus 151 ----------------------------~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 197 (236)
T 1zi8_A 151 ----------------------------KQLNKVPE-VKHPALFHMGGQDHFVPAPSRQLITEGFGANP-L---LQVHWY 197 (236)
T ss_dssp ----------------------------GCGGGGGG-CCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-T---EEEEEE
T ss_pred ----------------------------cchhhhhh-cCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-C---ceEEEE
Confidence 11223444 67899999999999999999999999997654 1 222237
Q ss_pred cCCCCCCCch-------hhHHHHHHHHHHHHHHhhc
Q 004866 697 LTTDIVEENR-------YLQCKESALETAFLIKMME 725 (726)
Q Consensus 697 ~~~gH~~~~~-------~~~~~~~~~~~~fl~~~l~ 725 (726)
+++||++... ....+....+.+||.++|.
T Consensus 198 ~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 233 (236)
T 1zi8_A 198 EEAGHSFARTGSSGYVASAAALANERTLDFLVPLQS 233 (236)
T ss_dssp TTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC
T ss_pred CCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcC
Confidence 8999976532 1223455667899998874
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=197.19 Aligned_cols=247 Identities=13% Similarity=0.096 Sum_probs=169.7
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEEccCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGG 538 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g 538 (726)
...+..+.+.+++.||.+++++++.|++ .+.++.|+||++||+.+.. ..|. .....|+++||.|+.+|+||+|.+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~ 139 (367)
T 2hdw_A 63 SAKVEHRKVTFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAVK--EQSSGLYAQTMAERGFVTLAFDPSYTGESG 139 (367)
T ss_dssp CTTEEEEEEEEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCCT--TSHHHHHHHHHHHTTCEEEEECCTTSTTSC
T ss_pred CCCceeEEEEEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCcc--hhhHHHHHHHHHHCCCEEEEECCCCcCCCC
Confidence 3457889999999999999999999987 3346789999999976533 3344 3678899999999999999998764
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC--
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY-- 616 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-- 616 (726)
..... ........+|+.+++++|.++..+|++||+++|+|+||.+++.++.++| .++++|+.+|+. +......
T Consensus 140 ~~~~~---~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~-~~~~~~~~~ 214 (367)
T 2hdw_A 140 GQPRN---VASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYD-MTRVMSKGY 214 (367)
T ss_dssp CSSSS---CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCC-HHHHHHHTT
T ss_pred CcCcc---ccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEecccc-ccHHHhhhh
Confidence 33221 1112346799999999999988888999999999999999999999888 589999998863 2110000
Q ss_pred --------------------------------CCCC---CC-----hhhhcc-------------cCCCCChhHHHHHHh
Q 004866 617 --------------------------------PILP---LI-----AADYEE-------------FGYPGDIDDFHAIRN 643 (726)
Q Consensus 617 --------------------------------~~~~---~~-----~~~~~~-------------~g~~~~~~~~~~~~~ 643 (726)
...| .. ...+.. +...+.......+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (367)
T 2hdw_A 215 NDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMN 294 (367)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcC
Confidence 0000 00 000000 000111122445667
Q ss_pred cCcccccccCCC-CCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc-hhhHHHHHHHHHHHHH
Q 004866 644 YSPYDNIQKDVL-YPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN-RYLQCKESALETAFLI 721 (726)
Q Consensus 644 ~sp~~~i~~~~~-~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~fl~ 721 (726)
++|...+.+ ++ .|+|+++|..|. ++.++.+++++ .+.+ ..+.+++++||+... ..... ....+.+||.
T Consensus 295 ~~~~~~~~~-i~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~---~~~~~~~g~gH~~~~~~~~~~-~~~~i~~fl~ 364 (367)
T 2hdw_A 295 MPILTYIKE-ISPRPILLIHGERAH--SRYFSETAYAA---AAEP---KELLIVPGASHVDLYDRLDRI-PFDRIAGFFD 364 (367)
T ss_dssp SCSCTTGGG-GTTSCEEEEEETTCT--THHHHHHHHHH---SCSS---EEEEEETTCCTTHHHHCTTTS-CHHHHHHHHH
T ss_pred CChhHhHHh-hcCCceEEEecCCCC--CHHHHHHHHHh---CCCC---eeEEEeCCCCeeeeecCchhH-HHHHHHHHHH
Confidence 788888876 77 999999999998 88888888776 3321 122228999997432 11111 3455689998
Q ss_pred Hhh
Q 004866 722 KMM 724 (726)
Q Consensus 722 ~~l 724 (726)
++|
T Consensus 365 ~~l 367 (367)
T 2hdw_A 365 EHL 367 (367)
T ss_dssp HHC
T ss_pred hhC
Confidence 875
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=186.99 Aligned_cols=239 Identities=14% Similarity=0.122 Sum_probs=158.5
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
+.+. .||.+|+++++.|++. +++.|+||++||..+......|......|+++||.|+.+|+||+|.+......
T Consensus 4 ~~~~-~~g~~l~~~~~~p~~~--~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~---- 76 (251)
T 2wtm_A 4 MYID-CDGIKLNAYLDMPKNN--PEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFED---- 76 (251)
T ss_dssp EEEE-ETTEEEEEEEECCTTC--CSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGGG----
T ss_pred eEEe-cCCcEEEEEEEccCCC--CCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCcccc----
Confidence 3444 4889999988887642 24578999999976653245677788899999999999999999976432211
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC----C-CC-CC
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY----P-IL-PL 621 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~----~-~~-~~ 621 (726)
.......+|+.++++++.++..+ +++.++||||||.+++.++.++|++++++|+.+|...+...... . .. +.
T Consensus 77 ~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T 2wtm_A 77 HTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPE 154 (251)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBTT
T ss_pred CCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCch
Confidence 01112357778888888765433 49999999999999999999999999999999997543221100 0 00 00
Q ss_pred Chhhhc-cc-CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCC
Q 004866 622 IAADYE-EF-GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699 (726)
Q Consensus 622 ~~~~~~-~~-g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 699 (726)
...... .+ +.......+..+...++...+.+ ++.|+|+++|..|..||+..+.++++.+.. ..+.+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~lii~G~~D~~v~~~~~~~~~~~~~~-------~~~~~~~~~ 226 (251)
T 2wtm_A 155 NIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDK-YTKPVLIVHGDQDEAVPYEASVAFSKQYKN-------CKLVTIPGD 226 (251)
T ss_dssp BCCSEEEETTTEEEETHHHHHHTTCCHHHHHHH-CCSCEEEEEETTCSSSCHHHHHHHHHHSSS-------EEEEEETTC
T ss_pred hcchHHhhhhccccchHHHHHHHccCHHHHHHh-cCCCEEEEEeCCCCCcChHHHHHHHHhCCC-------cEEEEECCC
Confidence 000000 11 10001112233333444444555 789999999999999999999988877632 122237999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 700 DIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
||.. .+...+....+.+||.+++.
T Consensus 227 gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 227 THCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp CTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred Cccc--chhHHHHHHHHHHHHHHhcc
Confidence 9987 33333445567899988764
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-21 Score=195.82 Aligned_cols=236 Identities=16% Similarity=0.108 Sum_probs=164.5
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 543 (726)
..+.+.+++ +|.+|.++++.|+ +.|+||++||+.+.. ..|......|+++||.|+.+|+||+|.+......
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~------~~p~vv~~HG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~~~~~ 75 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT------GMPGVLFVHGWGGSQ--HHSLVRAREAVGLGCICMTFDLRGHEGYASMRQS 75 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE------SEEEEEEECCTTCCT--TTTHHHHHHHHTTTCEEECCCCTTSGGGGGGTTT
T ss_pred ceeeEEecC-CCeEEEEEEecCC------CCcEEEEeCCCCCCc--CcHHHHHHHHHHCCCEEEEeecCCCCCCCCCccc
Confidence 466777877 7889999998886 579999999987643 4677888899999999999999999976443221
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCC-
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI- 622 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~- 622 (726)
. ......+|+.+++++|.+++.+|+++|+|+|+|+||++++.++.++| ++++++.+|.......+..+.....
T Consensus 76 ~----~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~~~~~~ 149 (290)
T 3ksr_A 76 V----TRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPKVSLNA 149 (290)
T ss_dssp C----BHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBHHHHHH
T ss_pred c----cHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhcccccccC
Confidence 1 11234689999999999988889999999999999999999999888 6788888887654321111000000
Q ss_pred hhhhcc-cCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCC
Q 004866 623 AADYEE-FGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDI 701 (726)
Q Consensus 623 ~~~~~~-~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH 701 (726)
...... ...+.... ..++...+.+ ++.|+|+++|..|..|++.++.+++++++..+ + ..+.+++++||
T Consensus 150 ~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~---~~~~~~~~~gH 218 (290)
T 3ksr_A 150 DPDLMDYRRRALAPG------DNLALAACAQ-YKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-S---LTSRVIAGADH 218 (290)
T ss_dssp STTHHHHTTSCCCGG------GCHHHHHHHH-CCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-E---EEEEEETTCCT
T ss_pred Chhhhhhhhhhhhhc------cccHHHHHHh-cCCCeEEEEecCCcccChHHHHHHHHHhccCC-C---ceEEEcCCCCC
Confidence 000000 11111100 1122223444 77899999999999999999999999998754 1 11222899999
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhc
Q 004866 702 VEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 702 ~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.............+.+||.++++
T Consensus 219 ~~~~~~~~~~~~~~i~~fl~~~~~ 242 (290)
T 3ksr_A 219 ALSVKEHQQEYTRALIDWLTEMVV 242 (290)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhc
Confidence 765433444455567899988763
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=190.92 Aligned_cols=244 Identities=13% Similarity=0.098 Sum_probs=158.7
Q ss_pred ceEEEEEEEC-CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCC--
Q 004866 463 YSCEQYDVPS-HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGG-- 536 (726)
Q Consensus 463 ~~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~-- 536 (726)
...+.+.+.+ .+|.++++.++.|++..+++++|+||++||+.+.. ..|.. ..+.+.++|++|+++|.++.|.
T Consensus 13 g~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~ 90 (280)
T 3ls2_A 13 GWHKQYTHSAVSTHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTD--ENFMQKAGAFKKAAELGIAIVAPDTSPRGDNV 90 (280)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTS
T ss_pred ceEEEEEEechhcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCCh--hhhhcchhHHHHHhhCCeEEEEeCCccccccc
Confidence 3556666765 57889999999999876677899999999986543 23433 3456667899999999876552
Q ss_pred ---------CCCccccccccc--CCCCc-HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 537 ---------GGKKWHHDGRRT--KKLNS-IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 537 ---------~g~~~~~~~~~~--~~~~~-~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
.|..|+...... ..... .+++.+.+..++++.+..++|++|+|+||||++++.++.++|++|+++++.
T Consensus 91 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 170 (280)
T 3ls2_A 91 PNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPVTSTKAISGHSMGGHGALMIALKNPQDYVSASAF 170 (280)
T ss_dssp CCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSEEEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEE
T ss_pred ccccccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCCCCCCeEEEEECHHHHHHHHHHHhCchhheEEEEe
Confidence 233333222111 01112 233333333333333334589999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCCChhhh-cccCCCCChhHHHHHHhcCcccccccCC---CCCeEEEEecCCCCcChHH-HHHHHH
Q 004866 605 VPFLDATNTLLYPILPLIAADY-EEFGYPGDIDDFHAIRNYSPYDNIQKDV---LYPAVLVTSSFNTRFGVWE-AAKWVA 679 (726)
Q Consensus 605 ~p~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~i~~~~---~~P~lli~g~~D~~V~~~~-~~~~~~ 679 (726)
+|++++... ++..... ..+|... ..+..++|...+.+.. ..|++++||+.|..|+... +.++++
T Consensus 171 s~~~~~~~~------~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~ 239 (280)
T 3ls2_A 171 SPIVNPINC------PWGVKAFTGYLGADK-----TTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVA 239 (280)
T ss_dssp SCCSCGGGS------HHHHHHHHHHHCSCG-----GGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHH
T ss_pred cCccCcccC------cchhhHHHhhcCchH-----HHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHH
Confidence 998876431 1110001 1123211 1123456665555411 4599999999999999744 889999
Q ss_pred HHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 680 RVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 680 ~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+|++++++ ..+.++++++|.+.. ........++|+.++|.
T Consensus 240 ~l~~~g~~---~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 240 VAKQKDYP---LTLEMQTGYDHSYFF---ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHTCC---EEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCC---ceEEEeCCCCCchhh---HHHHHHHHHHHHHHHhc
Confidence 99999853 122228999997422 12334566899998874
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=196.73 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=156.9
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHH
Q 004866 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKD 556 (726)
Q Consensus 477 ~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D 556 (726)
.|+++++.|++ .++.|+||++||+.+.. +......|+++||+|+.+|+||+++.+.... ...++|
T Consensus 160 ~l~~~l~~P~~---~~~~P~Vv~lhG~~~~~----~~~~a~~La~~Gy~Vla~D~rG~~~~~~~~~--------~~~~~d 224 (446)
T 3hlk_A 160 RVRGTLFLPPE---PGPFPGIVDMFGTGGGL----LEYRASLLAGKGFAVMALAYYNYEDLPKTME--------TLHLEY 224 (446)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCSSCSC----CCHHHHHHHTTTCEEEEECCSSSTTSCSCCS--------EEEHHH
T ss_pred eEEEEEEeCCC---CCCCCEEEEECCCCcch----hhHHHHHHHhCCCEEEEeccCCCCCCCcchh--------hCCHHH
Confidence 68999999875 35689999999986643 3445788999999999999999887644322 145899
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc---c---CCCCCCChh------
Q 004866 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL---L---YPILPLIAA------ 624 (726)
Q Consensus 557 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~---~---~~~~~~~~~------ 624 (726)
+.++++||.++..+|+++|+|+|+||||.+++.++.++|+ ++++|+.+|........ . .+..+....
T Consensus 225 ~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
T 3hlk_A 225 FEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTK 303 (446)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEECS
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcccccc
Confidence 9999999999988899999999999999999999999998 89999988865432100 0 000000000
Q ss_pred -----hhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHH-HHHHHHHHhcCCCCCCCcEEEEcC
Q 004866 625 -----DYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEA-AKWVARVRESTIYDPKRPILLNLT 698 (726)
Q Consensus 625 -----~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~ 698 (726)
....+..+.... .......+.+ ++.|+|+++|+.|..||+.+. .+++++|++++++. ..+.++++
T Consensus 304 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~-i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~--~~l~~~pg 374 (446)
T 3hlk_A 304 DGYADIVDVLNSPLEGP------DQKSFIPVER-AESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRK--PQIICYPE 374 (446)
T ss_dssp SSCEECTTCBCCTTSGG------GGGGBCCGGG-CCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCC--CEEEEETT
T ss_pred chHHHHHHHHhchhhcc------ccccccCHHH-CCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCC--cEEEEECC
Confidence 000111111100 0112222444 778999999999999999655 79999999988541 12223899
Q ss_pred CCCCCC---------------------------chhhHHHHHHHHHHHHHHhhc
Q 004866 699 TDIVEE---------------------------NRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 699 ~gH~~~---------------------------~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+||++. ......+.+..+++||.++|+
T Consensus 375 agH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~ 428 (446)
T 3hlk_A 375 TGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLG 428 (446)
T ss_dssp BCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999872 122345567788999999986
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=189.99 Aligned_cols=235 Identities=10% Similarity=0.009 Sum_probs=159.6
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCC--------------CCCCccEEEEEcCCCCCC---CCccchHHHHHHH-HC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYK--------------KENQNPGLLHGHGAYGEL---LDKRWRSELKSLL-DR 522 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~--------------~~~~~P~vl~~hGg~~~~---~~~~~~~~~~~l~-~~ 522 (726)
..+..+.+.+.+ +..+++.++.|++.. .+++.|+||++|||.... ....|......|+ ++
T Consensus 68 ~~v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~ 145 (351)
T 2zsh_A 68 DGVFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLC 145 (351)
T ss_dssp TTEEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHc
Confidence 456777787776 445788889998642 246789999999964322 1122667778888 78
Q ss_pred CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcC----CCCCC-cEEEEEecccHHHHHHHHHcCCC-
Q 004866 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE----IVKEH-KLAGWGYSAGGLLVAAAINCCPD- 596 (726)
Q Consensus 523 G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-ri~i~G~S~GG~l~~~~~~~~p~- 596 (726)
||+|+.+|+||++++. ....++|+.++++|+.++. .+|++ ||+|+|+||||.+++.++.++|+
T Consensus 146 g~~vv~~d~rg~~~~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~ 214 (351)
T 2zsh_A 146 KCVVVSVNYRRAPENP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGES 214 (351)
T ss_dssp TSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCCCCCC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhcc
Confidence 9999999999987642 2246899999999999865 37899 99999999999999999998888
Q ss_pred --ceeEEEEeCCcccccccccCCCCCCChhhhcccCCCC-ChhHHHH-HHh------------cCcc----cccccCCCC
Q 004866 597 --LFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG-DIDDFHA-IRN------------YSPY----DNIQKDVLY 656 (726)
Q Consensus 597 --~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~------------~sp~----~~i~~~~~~ 656 (726)
+++++|+.+|+++..... .......+.+. .....+. +.. .+|+ ..+.+ +..
T Consensus 215 ~~~v~~~vl~~p~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~ 285 (351)
T 2zsh_A 215 GIDVLGNILLNPMFGGNERT--------ESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEG-VSF 285 (351)
T ss_dssp TCCCCEEEEESCCCCCSSCC--------HHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTT-CCC
T ss_pred CCCeeEEEEECCccCCCcCC--------hhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhh-CCC
Confidence 899999999988754210 00000011111 0000000 111 1232 23333 455
Q ss_pred -CeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc---hhhHHHHHHHHHHHHHH
Q 004866 657 -PAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN---RYLQCKESALETAFLIK 722 (726)
Q Consensus 657 -P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~ 722 (726)
|+|+++|+.|..++ ++.+++++|++++++ ..+.+++++||++.. .....+....+.+||.+
T Consensus 286 pP~Lii~G~~D~~~~--~~~~~~~~l~~~g~~---~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 286 PKSLVVVAGLDLIRD--WQLAYAEGLKKAGQE---VKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp CEEEEEEETTSTTHH--HHHHHHHHHHHTTCC---EEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcCCCcchH--HHHHHHHHHHHcCCC---EEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 88889999998775 778999999998743 122228999997643 23344455667788865
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=180.74 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=153.7
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
..+..+.+.+++ ||.++.++++.|++ +.|+||++||+.+......+......|+++||.|+.+|+||.|.....
T Consensus 8 ~~~~~~~~~~~~-~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~ 81 (223)
T 2o2g_A 8 HQPQEYAVSVSV-GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEID 81 (223)
T ss_dssp CCCCEEEEEEEE-TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHH
T ss_pred CCceeeEEEEec-CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCcCCCCcc
Confidence 345678888887 99999998887763 479999999976654333455677889999999999999998753221
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCC
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP 620 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 620 (726)
..............+|+.++++++..+..+|+++++++|+|+||.+++.++.++|++++++|+.+|..++..
T Consensus 82 ~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~-------- 153 (223)
T 2o2g_A 82 LRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP-------- 153 (223)
T ss_dssp HHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGCT--------
T ss_pred chhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcCH--------
Confidence 111000011112357888999999988888999999999999999999999999999999999988654310
Q ss_pred CChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCC
Q 004866 621 LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTD 700 (726)
Q Consensus 621 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 700 (726)
..+.+ ++.|+++++|..|..+|. +.. +.+++.+.+ ..+..++++|
T Consensus 154 ---------------------------~~~~~-~~~P~l~i~g~~D~~~~~-~~~---~~~~~~~~~---~~~~~~~~~~ 198 (223)
T 2o2g_A 154 ---------------------------SALPH-VKAPTLLIVGGYDLPVIA-MNE---DALEQLQTS---KRLVIIPRAS 198 (223)
T ss_dssp ---------------------------TTGGG-CCSCEEEEEETTCHHHHH-HHH---HHHHHCCSS---EEEEEETTCC
T ss_pred ---------------------------HHHhc-CCCCEEEEEccccCCCCH-HHH---HHHHhhCCC---eEEEEeCCCC
Confidence 12233 678999999999988863 333 334444321 1222278999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 701 IVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 701 H~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|++.......+....+.+||.++|.
T Consensus 199 H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 199 HLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp TTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred cccCChHHHHHHHHHHHHHHHHhcC
Confidence 9864433344455667899998873
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-20 Score=189.32 Aligned_cols=243 Identities=14% Similarity=0.082 Sum_probs=158.9
Q ss_pred ceEEEEEEEC-CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCC-
Q 004866 463 YSCEQYDVPS-HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGG- 537 (726)
Q Consensus 463 ~~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~- 537 (726)
...+.+.+.+ .+|.++++.++.|++...++++|+||++||+.+.. ..|.. ..+.+.++|++|+.+|.|+.|..
T Consensus 15 g~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~ 92 (280)
T 3i6y_A 15 GWHKQYSHVSNTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSD--ENFMQKAGAQRLAAELGIAIVAPDTSPRGEGV 92 (280)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCS--SHHHHHSCCHHHHHHHTCEEEEECSSCCSTTC
T ss_pred CcEEEEEEeccccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCCh--hHHhhcccHHHHHhhCCeEEEEeCCccccccc
Confidence 3556666654 67899999999999865567899999999986643 23433 33566678999999999866531
Q ss_pred ----------CCccccccccc-C-CCCcHHH-HH-HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEE
Q 004866 538 ----------GKKWHHDGRRT-K-KLNSIKD-FI-SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 603 (726)
Q Consensus 538 ----------g~~~~~~~~~~-~-~~~~~~D-~~-~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 603 (726)
|..|+...... + ....+.+ +. +.+.++.++-.+ ++||+|+|+|+||++++.++.++|++|+++|+
T Consensus 93 ~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 171 (280)
T 3i6y_A 93 ADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSA 171 (280)
T ss_dssp CCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEE
T ss_pred CcccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEE
Confidence 12222211110 0 0112233 32 334444343333 68999999999999999999999999999999
Q ss_pred eCCcccccccccCCCCCCChhhh-cccCCCCChhHHHHHHhcCcccccccCC-CCCeEEEEecCCCCcChHH-HHHHHHH
Q 004866 604 EVPFLDATNTLLYPILPLIAADY-EEFGYPGDIDDFHAIRNYSPYDNIQKDV-LYPAVLVTSSFNTRFGVWE-AAKWVAR 680 (726)
Q Consensus 604 ~~p~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~i~~~~-~~P~lli~g~~D~~V~~~~-~~~~~~~ 680 (726)
.+|++++... ++....+ ..+|... ..+..++|...+.... ..|++++||+.|..|+... +.+++++
T Consensus 172 ~s~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~ 240 (280)
T 3i6y_A 172 FSPINNPVNC------PWGQKAFTAYLGKDT-----DTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAA 240 (280)
T ss_dssp ESCCCCGGGS------HHHHHHHHHHHCSCG-----GGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHH
T ss_pred eCCccccccC------chHHHHHHHhcCCch-----HHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHH
Confidence 9998876431 1111111 1123211 1133556666555411 4799999999999998765 8999999
Q ss_pred HHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 681 VRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 681 L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|++++++ ..+.+++++||.+.. ......+.++|+.++|.
T Consensus 241 l~~~g~~---~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 241 ASSNNYP---LELRSHEGYDHSYYF---IASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHTTCC---EEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHcCCC---ceEEEeCCCCccHHH---HHHhHHHHHHHHHhhcc
Confidence 9998853 122228999997422 22344567899999885
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=186.91 Aligned_cols=238 Identities=15% Similarity=0.040 Sum_probs=166.0
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccchHHHHHHHHC-CcEEEEEccCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLDR-GWVVAFADVRGGGGG 537 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~ 537 (726)
+.....+.+.+++.+| +|+++++.|++. .++.|+||++|||.. ......|......|+++ ||.|+.+|+||++++
T Consensus 43 ~~~~~~~~~~i~~~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~ 119 (310)
T 2hm7_A 43 EPVAEVREFDMDLPGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH 119 (310)
T ss_dssp CCCSEEEEEEEEETTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CCcceEEEEEeccCCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 4567889999999988 999999999763 356899999999642 22345677788888886 999999999999875
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCcccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDA 610 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~ 610 (726)
. .....+|+.++++|+.++. .+|++||+|+|+|+||.+++.++.++|+ +++++|+.+|+++.
T Consensus 120 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~ 188 (310)
T 2hm7_A 120 K-----------FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGY 188 (310)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCC
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCC
Confidence 2 1246799999999999874 3688999999999999999999987776 69999999999876
Q ss_pred cccccCCCCCCChhhhccc--CCCCChhHHHHH-------------HhcCcccc--cccCCCCCeEEEEecCCCCcChHH
Q 004866 611 TNTLLYPILPLIAADYEEF--GYPGDIDDFHAI-------------RNYSPYDN--IQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~-------------~~~sp~~~--i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
...... ..+..+ +..........+ ...+|... +.. + .|+|+++|+.|..+ .+
T Consensus 189 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-~-~P~lii~G~~D~~~--~~ 257 (310)
T 2hm7_A 189 DPAHPP-------ASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSG-L-PPAYIATAQYDPLR--DV 257 (310)
T ss_dssp CTTSCC-------HHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTT-C-CCEEEEEEEECTTH--HH
T ss_pred CcccCC-------cchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccC-C-CCEEEEEecCCCch--HH
Confidence 411000 000000 000011111100 02344432 222 2 38999999999876 68
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.+++++|++++++ ..+.+++++||++.. .....+....+.+||.++|+
T Consensus 258 ~~~~~~~l~~~g~~---~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 258 GKLYAEALNKAGVK---VEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHHHHHHHTTCC---EEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCC---EEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 89999999998753 122228899997643 12334455667899998874
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-19 Score=184.45 Aligned_cols=241 Identities=14% Similarity=0.027 Sum_probs=165.0
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC-CCCCCccchHHHHHHHHC-CcEEEEEccCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY-GELLDKRWRSELKSLLDR-GWVVAFADVRGGGGG 537 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~ 537 (726)
+.....+.+.+++.+| .|++.++.|++ .++.|+||++|||. .......|......|+++ ||.|+.+|+||++++
T Consensus 60 ~~~~~~~~~~i~~~~~-~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~ 135 (323)
T 3ain_A 60 EEVGKIEDITIPGSET-NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPEN 135 (323)
T ss_dssp CCCSEEEEEEEECSSS-EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CCccEEEEEEecCCCC-eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCC
Confidence 3567889999999888 89999999875 35679999999964 223345677788888864 999999999999874
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHcCCC--CCCcEEEEEecccHHHHHHHHHcCCCce---eEEEEeCCcccccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV--KEHKLAGWGYSAGGLLVAAAINCCPDLF---RAVVLEVPFLDATN 612 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~--d~~ri~i~G~S~GG~l~~~~~~~~p~~f---~a~v~~~p~~d~~~ 612 (726)
. ....++|+.++++|+.++... |++||+|+|+|+||.+++.++.++|++. +++|+.+|+++...
T Consensus 136 ~-----------~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~ 204 (323)
T 3ain_A 136 K-----------FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDL 204 (323)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCS
T ss_pred C-----------CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCC
Confidence 2 234689999999999876311 7899999999999999999998888766 89999999987542
Q ss_pred ccc-----CCCCCCChhh----hccc-CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHH
Q 004866 613 TLL-----YPILPLIAAD----YEEF-GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVR 682 (726)
Q Consensus 613 ~~~-----~~~~~~~~~~----~~~~-g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~ 682 (726)
... .....+.... +..+ +.+.... -...+|+...-. .-.|+|+++|+.|..+ .++.+++++|+
T Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~sp~~~~l~-~l~P~lii~G~~D~l~--~~~~~~a~~l~ 277 (323)
T 3ain_A 205 ITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLL----DFRFSPILADLN-DLPPALIITAEHDPLR--DQGEAYANKLL 277 (323)
T ss_dssp CCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGG----CTTTCGGGSCCT-TCCCEEEEEETTCTTH--HHHHHHHHHHH
T ss_pred CCccHHHhccCCCCCHHHHHHHHHHhCCCCcccC----CcccCcccCccc-CCCHHHEEECCCCccH--HHHHHHHHHHH
Confidence 100 0000000000 0000 1100000 012355543111 1248999999999776 58899999999
Q ss_pred hcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 683 ESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++++ ..+.+++++||++.. .....+....+.+||.++|.
T Consensus 278 ~ag~~---~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 278 QSGVQ---VTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HTTCC---EEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCC---EEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 98853 122228999998653 12334455667899998874
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=174.36 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=142.0
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC---CCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY---GELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
.+.+++++.|| +|+++++.|++ .++.|+||++||++ +......|......|+++||.|+.+|+||+|.+...+
T Consensus 6 ~~~~~~~~~~g-~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~ 81 (208)
T 3trd_A 6 NEDFLIQGPVG-QLEVMITRPKG---IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRY 81 (208)
T ss_dssp SSCEEEECSSS-EEEEEEECCSS---CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC
T ss_pred cceEEEECCCc-eEEEEEEcCCC---CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCCc
Confidence 45678999999 99998887764 24679999999953 2222344566778899999999999999999764432
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCC
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPL 621 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~ 621 (726)
.......+|+.++++++.++ .+.++++++|+|+||.+++.++ ++| +++++|+.+|..+...
T Consensus 82 ------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~~--------- 142 (208)
T 3trd_A 82 ------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYEG--------- 142 (208)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSGG---------
T ss_pred ------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccCC---------
Confidence 22334689999999999986 4558999999999999999999 667 8899999888762110
Q ss_pred ChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCC
Q 004866 622 IAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDI 701 (726)
Q Consensus 622 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH 701 (726)
+..+.. .+.|+++++|..|..||+.++.++++++.... .+..++++||
T Consensus 143 -------------------------~~~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~~~------~~~~~~~~~H 190 (208)
T 3trd_A 143 -------------------------FASLTQ-MASPWLIVQGDQDEVVPFEQVKAFVNQISSPV------EFVVMSGASH 190 (208)
T ss_dssp -------------------------GTTCCS-CCSCEEEEEETTCSSSCHHHHHHHHHHSSSCC------EEEEETTCCS
T ss_pred -------------------------chhhhh-cCCCEEEEECCCCCCCCHHHHHHHHHHccCce------EEEEeCCCCC
Confidence 011222 57899999999999999999999988877531 2223799999
Q ss_pred CCCc
Q 004866 702 VEEN 705 (726)
Q Consensus 702 ~~~~ 705 (726)
+...
T Consensus 191 ~~~~ 194 (208)
T 3trd_A 191 FFHG 194 (208)
T ss_dssp SCTT
T ss_pred cccc
Confidence 8654
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-19 Score=185.81 Aligned_cols=247 Identities=17% Similarity=0.097 Sum_probs=165.7
Q ss_pred CCceEEEEEEECCCCc-EEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccchHHHHHHHH-CCcEEEEEccCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGI-SVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSLLD-RGWVVAFADVRGGGGG 537 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~-~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~ 537 (726)
..+..+.+++++.||. .|+++++.|++. .++.|+||++|||... .....|......|++ .||.|+.+|+||+|++
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~--~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~ 124 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPET 124 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTS
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC--CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCC
Confidence 4678899999999997 899999999752 3568999999997522 233456677788887 5999999999999874
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCcccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDA 610 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~ 610 (726)
. ....++|+.++++|+.++ -.+|++||+|+|+|+||++++.++.++|+ .++++|+.+|+++.
T Consensus 125 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 193 (323)
T 1lzl_A 125 T-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDD 193 (323)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCT
T ss_pred C-----------CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccCC
Confidence 2 224688999999999874 23688999999999999999999887765 49999999999876
Q ss_pred ccccc----CCCCC-CChh----hhccc-CCCCCh-hHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHH
Q 004866 611 TNTLL----YPILP-LIAA----DYEEF-GYPGDI-DDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVA 679 (726)
Q Consensus 611 ~~~~~----~~~~~-~~~~----~~~~~-g~~~~~-~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~ 679 (726)
..... ....+ +... .+..+ +.+... .........+|+....-....|+++++|+.|..+ .++.++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~P~li~~G~~D~~~--~~~~~~~~ 271 (323)
T 1lzl_A 194 RLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPLR--DEGIEYAL 271 (323)
T ss_dssp TCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTTH--HHHHHHHH
T ss_pred CcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccCcccCCCChhheEECCcCCch--HHHHHHHH
Confidence 43100 00000 0000 00000 111000 0000001124443311111368999999999776 58899999
Q ss_pred HHHhcCCCCCCCcEEEEcCCCCCCCc---hhhHHHHHHHHHHHHHHhhc
Q 004866 680 RVRESTIYDPKRPILLNLTTDIVEEN---RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 680 ~L~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~~l~ 725 (726)
+|++++++ ..+.+++++||++.. .....+....+.+||.++|+
T Consensus 272 ~l~~~g~~---~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~ 317 (323)
T 1lzl_A 272 RLLQAGVS---VELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 317 (323)
T ss_dssp HHHHTTCC---EEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCC---EEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhc
Confidence 99998853 122228999998542 12234456677899999875
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=188.45 Aligned_cols=234 Identities=17% Similarity=0.061 Sum_probs=156.7
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccchHHHHHHHH-CCcEEEEEccCCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSLLD-RGWVVAFADVRGGGGGG 538 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g 538 (726)
.....+.+.+ + .|+++++.|++ .++.|+||++|||... .....|......|++ .||+|+.+|||++++..
T Consensus 55 ~~~~~~~~~~---~--~i~~~~~~p~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~ 126 (322)
T 3fak_A 55 DDIQVEQVTV---A--GCAAEWVRAPG---CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP 126 (322)
T ss_dssp TTCEEEEEEE---T--TEEEEEEECTT---CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred CCeeEEEEee---C--CeEEEEEeCCC---CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC
Confidence 3445555544 2 38888998875 2468999999997532 222345556677776 59999999999887642
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc----eeEEEEeCCcccccccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL----FRAVVLEVPFLDATNTL 614 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~~ 614 (726)
....++|+.++++||.++ .+|++||+|+|+|+||++++.++.+.++. ++++|+.+|++|+....
T Consensus 127 -----------~~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~ 194 (322)
T 3fak_A 127 -----------FPAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTN 194 (322)
T ss_dssp -----------TTHHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCC
T ss_pred -----------CCcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCC
Confidence 235789999999999988 57999999999999999999998876654 99999999999865311
Q ss_pred c----C-CCCCC-Ch---hhh-ccc-CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHh
Q 004866 615 L----Y-PILPL-IA---ADY-EEF-GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRE 683 (726)
Q Consensus 615 ~----~-~~~~~-~~---~~~-~~~-g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~ 683 (726)
. . ...+. .. .++ ..+ +.... . ....+|+..... ...|+|+++|+.|.. ..++.+++++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~sp~~~~~~-~~pP~li~~g~~D~~--~~~~~~~~~~l~~ 266 (322)
T 3fak_A 195 DSFKTRAEADPMVAPGGINKMAARYLNGADA-K----HPYASPNFANLK-GLPPLLIHVGRDEVL--LDDSIKLDAKAKA 266 (322)
T ss_dssp THHHHTTTTCCSCCSSHHHHHHHHHHTTSCT-T----CTTTCGGGSCCT-TCCCEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred cCHHHhCccCcccCHHHHHHHHHHhcCCCCC-C----CcccCCCccccc-CCChHhEEEcCcCcc--HHHHHHHHHHHHH
Confidence 0 0 00000 00 000 000 10000 0 012356643332 234888888888865 4689999999999
Q ss_pred cCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 684 STIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 684 ~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
+|++ ..+.++++++|++.. .....+....+.+||.++|+
T Consensus 267 ~g~~---~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (322)
T 3fak_A 267 DGVK---STLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWA 309 (322)
T ss_dssp TTCC---EEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC---EEEEEeCCceeehhhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 9854 122228999998643 23345566778899999885
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=189.63 Aligned_cols=242 Identities=13% Similarity=0.107 Sum_probs=152.9
Q ss_pred eEEEEEEE-CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH---HHHHHHCCcEEEEEcc--CCCCCC
Q 004866 464 SCEQYDVP-SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE---LKSLLDRGWVVAFADV--RGGGGG 537 (726)
Q Consensus 464 ~~~~~~~~-s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---~~~l~~~G~~v~~~d~--RG~g~~ 537 (726)
..+.+.+. ..+|..+++.++.|++.. ++++|+||++||+.+.. ..|... .+.++++||+|+.+|+ ||+|.+
T Consensus 15 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~ 91 (282)
T 3fcx_A 15 LQKVFEHDSVELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCTE--QNFISKSGYHQSASEHGLVVIAPDTSPRGCNIK 91 (282)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC-
T ss_pred cEEEEEEEchhcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcchHHHHhhcCCeEEEEeccccCccccc
Confidence 34445554 567889999999998753 36799999999986643 334333 4677889999999999 888865
Q ss_pred CCc----------ccccccccC---CCCcHHHHH-HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEE
Q 004866 538 GKK----------WHHDGRRTK---KLNSIKDFI-SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 603 (726)
Q Consensus 538 g~~----------~~~~~~~~~---~~~~~~D~~-~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 603 (726)
|.. |+....... ......++. +.+.++.++--+|++||+|+|+||||++++.++.++|++|+++|+
T Consensus 92 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 171 (282)
T 3fcx_A 92 GEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSA 171 (282)
T ss_dssp -------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEE
T ss_pred cccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEE
Confidence 532 221111100 001233344 333444434347899999999999999999999999999999999
Q ss_pred eCCcccccccccCCCCCCChhhh-cccCCCCChhHHHHHHhcCccccccc--CCCCCeEEEEecCCCCcChHH--HHHHH
Q 004866 604 EVPFLDATNTLLYPILPLIAADY-EEFGYPGDIDDFHAIRNYSPYDNIQK--DVLYPAVLVTSSFNTRFGVWE--AAKWV 678 (726)
Q Consensus 604 ~~p~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~i~~--~~~~P~lli~g~~D~~V~~~~--~~~~~ 678 (726)
.+|+++.... ++....+ ..+|... ..+..++|...+.. .+..|++++||..|..||..+ +.+++
T Consensus 172 ~s~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~ 240 (282)
T 3fcx_A 172 FAPICNPVLC------PWGKKAFSGYLGTDQ-----SKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFI 240 (282)
T ss_dssp ESCCCCGGGS------HHHHHHHHHHHC--------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHH
T ss_pred eCCccCcccC------chhHHHHHHhcCCch-----hhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHH
Confidence 9999875431 1100011 1123221 11223445433332 147899999999998886655 66999
Q ss_pred HHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 679 ARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 679 ~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
++|++++++ ..+.+++++||++.. ......+.+.|+.++|.
T Consensus 241 ~~l~~~g~~---~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 241 AACTEKKIP---VVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHTTCC---EEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCc---eEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 999998853 122228999997422 12234456788888875
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-19 Score=181.10 Aligned_cols=242 Identities=19% Similarity=0.140 Sum_probs=162.8
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
....+.+.+. .||.+|.++++.|++ .+.|+||++||..+......|......|+++||.|+.+|+||+|.+....
T Consensus 19 ~~~~~~~~~~-~~g~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 93 (270)
T 3pfb_A 19 FQGMATITLE-RDGLQLVGTREEPFG----EIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKF 93 (270)
T ss_dssp CCEEEEEEEE-ETTEEEEEEEEECSS----SSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCG
T ss_pred eccceEEEec-cCCEEEEEEEEcCCC----CCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCCCCC
Confidence 3355666665 589999999887763 34799999999876543455677788999999999999999999765432
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCC--
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPIL-- 619 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~-- 619 (726)
.. .......+|+.++++++.++. +.++++|+|+|+||++++.++.++|++++++|+.+|..+..........
T Consensus 94 ~~----~~~~~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~ 167 (270)
T 3pfb_A 94 EN----MTVLNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQG 167 (270)
T ss_dssp GG----CCHHHHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETT
T ss_pred Cc----cCHHHHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhc
Confidence 21 111234678888888888653 3359999999999999999999999999999999998765431110000
Q ss_pred ----CCChhhhccc-CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 620 ----PLIAADYEEF-GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 620 ----~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
+........+ ...........+...++...+.+ ++.|+|+++|..|..||+..+.++++.+... .+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~~~ 239 (270)
T 3pfb_A 168 VTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQ-FTKPVCLIHGTDDTVVSPNASKKYDQIYQNS-------TLH 239 (270)
T ss_dssp EECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTT-CCSCEEEEEETTCSSSCTHHHHHHHHHCSSE-------EEE
T ss_pred cccCcccccccccccccccchhHhhcccccCHHHHHhh-CCccEEEEEcCCCCCCCHHHHHHHHHhCCCC-------eEE
Confidence 0000000000 10111223344555566666665 8999999999999999999999888875432 223
Q ss_pred EEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 695 LNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 695 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
+++++||.... .........+.+||.++
T Consensus 240 ~~~~~gH~~~~-~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 240 LIEGADHCFSD-SYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp EETTCCTTCCT-HHHHHHHHHHHHHHC--
T ss_pred EcCCCCcccCc-cchHHHHHHHHHHHhhc
Confidence 37999997642 22333344556787654
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=184.49 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=158.5
Q ss_pred ceEEEEEEE-CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCCC
Q 004866 463 YSCEQYDVP-SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGGG 538 (726)
Q Consensus 463 ~~~~~~~~~-s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g 538 (726)
...+.+.+. ..+|..+++.++.|++.. ++++|+||++||+.+.. ..|.. ....+.++||+|+.+|+||+|...
T Consensus 13 g~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~ 89 (278)
T 3e4d_A 13 GMQGVFSHQSETLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTH--ANVMEKGEYRRMASELGLVVVCPDTSPRGNDV 89 (278)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTS
T ss_pred CcEEEEEEeccccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEecCCcccCccc
Confidence 345556664 567899999999998753 56799999999986643 33444 234455569999999999988643
Q ss_pred Cc------------cccccccc--CCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEE
Q 004866 539 KK------------WHHDGRRT--KKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602 (726)
Q Consensus 539 ~~------------~~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 602 (726)
.. |+...... .....+.+++ +.++++.+.-.+|++||+|+|+|+||++++.++.++|++|+++|
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 169 (278)
T 3e4d_A 90 PDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCS 169 (278)
T ss_dssp CCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEE
T ss_pred ccccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEE
Confidence 21 11111110 0111334433 35566665545788999999999999999999999999999999
Q ss_pred EeCCcccccccccCCCCCCChhhhc-ccCCCCChhHHHHHHhcCcccccccC-CCCCeEEEEecCCCCcChHH-HHHHHH
Q 004866 603 LEVPFLDATNTLLYPILPLIAADYE-EFGYPGDIDDFHAIRNYSPYDNIQKD-VLYPAVLVTSSFNTRFGVWE-AAKWVA 679 (726)
Q Consensus 603 ~~~p~~d~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~i~~~-~~~P~lli~g~~D~~V~~~~-~~~~~~ 679 (726)
+.+|++++... ++....+. .+|... ..+..++|...+... ...|++++||..|..||... +.++++
T Consensus 170 ~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~ 238 (278)
T 3e4d_A 170 AFAPIVAPSSA------DWSEPALEKYLGADR-----AAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEE 238 (278)
T ss_dssp EESCCSCGGGC------TTTHHHHHHHHCSCG-----GGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHH
T ss_pred EeCCcccccCC------ccchhhHHHhcCCcH-----HHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHH
Confidence 99999886531 11111111 123221 112345555544431 23488889999999888533 789999
Q ss_pred HHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 680 RVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 680 ~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+|+++++ ++.+ +++++|.+.. ......+.+.|+.++|+
T Consensus 239 ~l~~~g~-----~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 239 AIKGTDI-----GLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp HHTTSSC-----EEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHcCC-----CceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 9999884 3333 8999997422 12334566899998875
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=207.99 Aligned_cols=244 Identities=14% Similarity=0.035 Sum_probs=166.9
Q ss_pred eEEEEEE-----ECCCCcE--EEEEEEEcCCCCCCCCccEEEEEc--CCCCCC---------C-----------------
Q 004866 464 SCEQYDV-----PSHDGIS--VPLTIIYSPKYKKENQNPGLLHGH--GAYGEL---------L----------------- 508 (726)
Q Consensus 464 ~~~~~~~-----~s~dG~~--i~~~l~~p~~~~~~~~~P~vl~~h--Gg~~~~---------~----------------- 508 (726)
..+.+++ +.+||++ |.++|+.|++. +++|+||..| |+.+.. .
T Consensus 167 ~~e~~~ve~~v~~~~DG~~d~L~a~l~~P~~~---~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 243 (763)
T 1lns_A 167 EREVLWVESPVDSEQRGENDLIKIQIIRPKST---EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQK 243 (763)
T ss_dssp EEEEEEEECSCCTTCSSSCCEEEEEEEECCCS---SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCC
T ss_pred eeeeeEEecCcccCCCCCeeeEEEEEEecCCC---CcccEEEecCCcCCCCcccccccccccccccccccCccccccccc
Confidence 3445555 4689999 99999999863 6899999554 432110 0
Q ss_pred ------------------Cccc-----hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHH
Q 004866 509 ------------------DKRW-----RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLI 565 (726)
Q Consensus 509 ------------------~~~~-----~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 565 (726)
...| ....+.|+++||+|+.+|+||+|+++..+. .......+|+.++++||.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~~-----~~~~~e~~D~~a~IdwL~ 318 (763)
T 1lns_A 244 LPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTAVIDWLN 318 (763)
T ss_dssp CCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcCC-----CCCHHHHHHHHHHHHHHh
Confidence 0112 124588999999999999999998765432 122356899999999998
Q ss_pred Hc---------------CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC-------CCCC-C
Q 004866 566 EK---------------EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP-------ILPL-I 622 (726)
Q Consensus 566 ~~---------------~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~-------~~~~-~ 622 (726)
.+ ++ +.+||+++|+||||++++.+|.++|+.++|+|+.+|+.|+...+... ..+. .
T Consensus 319 ~~~~~~~d~~~~~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~ 397 (763)
T 1lns_A 319 GRARAYTSRKKTHEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGED 397 (763)
T ss_dssp TSSCEESSTTCCCEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCC
T ss_pred hcccccccccccccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchh
Confidence 43 33 45799999999999999999999999999999999998765432111 0110 0
Q ss_pred h-----hhhccc--------------------------CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcCh
Q 004866 623 A-----ADYEEF--------------------------GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGV 671 (726)
Q Consensus 623 ~-----~~~~~~--------------------------g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~ 671 (726)
. ..+..+ ..+. ..+.+...+|..++.+ ++.|+|++||..|..||+
T Consensus 398 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~w~~~s~~~~l~~-I~~PvLii~G~~D~~vp~ 473 (763)
T 1lns_A 398 LDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGD---YNQFWHDRNYLINTDK-VKADVLIVHGLQDWNVTP 473 (763)
T ss_dssp HHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCC---CCHHHHTTBGGGGGGG-CCSEEEEEEETTCCSSCT
T ss_pred hhHHhHHHHhhhcCcchhhhHHHHHHHHHHHHHhhhhhccCc---hhHHhhccChhhHhhc-CCCCEEEEEECCCCCCCh
Confidence 0 000000 0010 0123456677888887 999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 672 WEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 672 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.++.+++++|++ +++ ..+ +..++||+.............+.+||.++|.
T Consensus 474 ~~a~~l~~al~~-~~~---~~l-~i~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lk 522 (763)
T 1lns_A 474 EQAYNFWKALPE-GHA---KHA-FLHRGAHIYMNSWQSIDFSETINAYFVAKLL 522 (763)
T ss_dssp HHHHHHHHHSCT-TCC---EEE-EEESCSSCCCTTBSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcc-CCC---eEE-EEeCCcccCccccchHHHHHHHHHHHHHHhc
Confidence 999999999987 532 222 2568899753211222235567899999884
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-19 Score=183.88 Aligned_cols=241 Identities=17% Similarity=0.093 Sum_probs=163.9
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccchHHHHHHHHC-CcEEEEEccCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLDR-GWVVAFADVRGGGGG 537 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~ 537 (726)
+.....+.+.+++.+| .|++.+++|++. ++.|+||++||+.. ......|......|+++ ||.|+.+|+||+|++
T Consensus 43 ~~~~~~~~~~i~~~~g-~i~~~~~~p~~~---~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~ 118 (311)
T 2c7b_A 43 EPIAETRDVHIPVSGG-SIRARVYFPKKA---AGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEY 118 (311)
T ss_dssp CCCSEEEEEEEEETTE-EEEEEEEESSSC---SSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTS
T ss_pred CCcceEEEEEecCCCC-cEEEEEEecCCC---CCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCC
Confidence 4466889999999998 899999998752 34799999999751 12335677778888886 999999999999875
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCcccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDA 610 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~ 610 (726)
. .....+|+.++++|+.+.. .+|++||+|+|+|+||++++.++.++|+ +++++|+.+|++++
T Consensus 119 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 187 (311)
T 2c7b_A 119 K-----------FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNM 187 (311)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCC
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCC
Confidence 2 2246789999999998763 3588999999999999999999987765 59999999999884
Q ss_pred ccccc--------CCCCCCChh---hh-ccc-CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHH
Q 004866 611 TNTLL--------YPILPLIAA---DY-EEF-GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKW 677 (726)
Q Consensus 611 ~~~~~--------~~~~~~~~~---~~-~~~-g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~ 677 (726)
..... .....+... ++ ..+ +.+.... ....+|+...-+.+ .|+|+++|+.|..++ ++..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~~ 260 (311)
T 2c7b_A 188 TGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAY----DFKASPLLADLGGL-PPALVVTAEYDPLRD--EGELY 260 (311)
T ss_dssp SSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGG----STTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHHH
T ss_pred ccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCcccc----CcccCcccccccCC-CcceEEEcCCCCchH--HHHHH
Confidence 21100 000001000 00 001 1111000 01234544322213 399999999998775 67788
Q ss_pred HHHHHhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 678 VARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 678 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++|+.++++ ..+.++++++|++.. .....+....+.+||.++|+
T Consensus 261 ~~~l~~~g~~---~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 261 AYKMKASGSR---AVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHHTTCC---EEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCC---EEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 9999988743 122228999998653 13334455667899998875
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=185.48 Aligned_cols=248 Identities=16% Similarity=0.121 Sum_probs=163.0
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC---CCCCCccchHHHHHHHHCCcEEEEEccCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY---GELLDKRWRSELKSLLDRGWVVAFADVRGGGGG 537 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~ 537 (726)
..+..+.+.+++.+|..|.+.++.|++. .++.|+||++|||. +......|......|+++||+|+.+|+||+|++
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~ 155 (361)
T 1jkm_A 78 DDVETSTETILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTA 155 (361)
T ss_dssp CCEEEEEEEEECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEET
T ss_pred CCceeeeeeeecCCCCeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCC
Confidence 4567788889999998899999999763 23689999999975 222112566677889989999999999999754
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHcC-CCCCCcEEEEEecccHHHHHHHHHc-----CCCceeEEEEeCCccccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKE-IVKEHKLAGWGYSAGGLLVAAAINC-----CPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~p~~d~~ 611 (726)
.. .......+.|+.++++|+.++. ....++|+|+|+|+||.+++.++.+ +|++++++|+.+|+++..
T Consensus 156 ~~-------~~~~~~~~~D~~~~~~~v~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~~ 228 (361)
T 1jkm_A 156 EG-------HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGG 228 (361)
T ss_dssp TE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCC
T ss_pred CC-------CCCCCccHHHHHHHHHHHHhhHHhcCCCeEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCccccc
Confidence 21 1223456899999999998762 1122399999999999999999988 788999999999998862
Q ss_pred ccccCCCCCCChhhhccc-CCCCChhHHHHH-------------HhcCccc----ccccCCCCCeEEEEecCCCCcChHH
Q 004866 612 NTLLYPILPLIAADYEEF-GYPGDIDDFHAI-------------RNYSPYD----NIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-------------~~~sp~~----~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
..............+.++ +..........+ ...+|+. .+.. +. |+|+++|+.|..++ +
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~-l~-P~Lii~G~~D~~~~--~ 304 (361)
T 1jkm_A 229 YAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRG-LP-PFVVAVNELDPLRD--E 304 (361)
T ss_dssp TTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTT-CC-CEEEEEETTCTTHH--H
T ss_pred cccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcC-CC-ceEEEEcCcCcchh--h
Confidence 100000000000000000 000011111100 0124441 2233 44 99999999998887 8
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC-c-h---hhH-HHHHHHHHHHHHHhh
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEE-N-R---YLQ-CKESALETAFLIKMM 724 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~-~-~---~~~-~~~~~~~~~fl~~~l 724 (726)
+.+++++|++++++ ..+.+++++||++. . . ... .+....+.+||.++.
T Consensus 305 ~~~~~~~l~~~g~~---~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 305 GIAFARRLARAGVD---VAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp HHHHHHHHHHTTCC---EEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---EEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99999999998753 12222899999865 2 1 223 344566789998764
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-18 Score=180.46 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=161.9
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
.+.+.||.+|.+.++.|.+ ++.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+..... ...
T Consensus 39 ~~~~~dg~~l~~~~~~p~~----~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~---~~~ 109 (342)
T 3hju_A 39 HLVNADGQYLFCRYWKPTG----TPKALIFVSHGAGEHS--GRYEELARMLMGLDLLVFAHDHVGHGQSEGERM---VVS 109 (342)
T ss_dssp EEECTTSCEEEEEEECCSS----CCSEEEEEECCTTCCG--GGGHHHHHHHHTTTEEEEEECCTTSTTSCSSTT---CCS
T ss_pred eEEccCCeEEEEEEeCCCC----CCCcEEEEECCCCccc--chHHHHHHHHHhCCCeEEEEcCCCCcCCCCcCC---CcC
Confidence 6788999999998876653 4579999999976643 467888899999999999999999997653211 111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc-------------
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL------------- 615 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------------- 615 (726)
......+|+.+++++|..+ .+.++++|+|+|+||++++.++.++|++++++|+.+|+.+......
T Consensus 110 ~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (342)
T 3hju_A 110 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNL 187 (342)
T ss_dssp CTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHHHHHHHHHHHH
Confidence 1223478999999999876 4567999999999999999999999999999999999876532110
Q ss_pred -CCCCCCChhhhcccCCCCChhHHHHHHh--------------------c-CcccccccCCCCCeEEEEecCCCCcChHH
Q 004866 616 -YPILPLIAADYEEFGYPGDIDDFHAIRN--------------------Y-SPYDNIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 616 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------------~-sp~~~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
.......... ..+- .........+.. . +....+.+ ++.|+|+|+|..|..||+..
T Consensus 188 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Pvlii~G~~D~~~~~~~ 264 (342)
T 3hju_A 188 VLPNLSLGPID-SSVL-SRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPK-LTVPFLLLQGSADRLCDSKG 264 (342)
T ss_dssp HCTTCBCCCCC-GGGS-CSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGG-CCSCEEEEEETTCSSSCHHH
T ss_pred hccccccCccc-cccc-ccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHh-CCcCEEEEEeCCCcccChHH
Confidence 0000000000 0000 001111111111 0 11133444 78999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHHhhc
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.++++.+...+ ..+.+++++||.... .....+.....++||.+++.
T Consensus 265 ~~~~~~~~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (342)
T 3hju_A 265 AYLLMELAKSQD-----KTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTA 313 (342)
T ss_dssp HHHHHHHCCCSS-----EEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-----ceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccC
Confidence 999998887432 123337999998644 23344556667899988763
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=170.88 Aligned_cols=207 Identities=10% Similarity=0.077 Sum_probs=153.5
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC---CCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY---GELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
...+.+.+++.|| ++.++++.|++.. .++.|+||++||++ +......|......|+++||.|+.+|+||+|.+..
T Consensus 8 ~~~~~~~~~~~~g-~~~~~~~~p~~~~-~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 85 (220)
T 2fuk_A 8 TESAALTLDGPVG-PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAG 85 (220)
T ss_dssp SSCEEEEEEETTE-EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCS
T ss_pred ccceEEEEeCCCC-eEEEEEEeCCCCC-ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCC
Confidence 4567888999999 8999998887521 13579999999953 22222345667788999999999999999997654
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCC
Q 004866 540 KWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPIL 619 (726)
Q Consensus 540 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~ 619 (726)
.+ .......+|+.++++++.++. +.++++++|+|+||.+++.++.++ .++++|+.+|..+...
T Consensus 86 ~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~------- 148 (220)
T 2fuk_A 86 SF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD------- 148 (220)
T ss_dssp CC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-------
T ss_pred Cc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh-------
Confidence 43 122346899999999999874 667999999999999999999886 7899999998765431
Q ss_pred CCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCC
Q 004866 620 PLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699 (726)
Q Consensus 620 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 699 (726)
+..+. ...|+++++|..|..||+.++.+++++++.. ..+..++++
T Consensus 149 ---------------------------~~~~~--~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 193 (220)
T 2fuk_A 149 ---------------------------FSDVQ--PPAQWLVIQGDADEIVDPQAVYDWLETLEQQ------PTLVRMPDT 193 (220)
T ss_dssp ---------------------------CTTCC--CCSSEEEEEETTCSSSCHHHHHHHHTTCSSC------CEEEEETTC
T ss_pred ---------------------------hhhcc--cCCcEEEEECCCCcccCHHHHHHHHHHhCcC------CcEEEeCCC
Confidence 01111 2468999999999999999999998888521 123337899
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 700 DIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
||+.... ..+......+||.+.|.
T Consensus 194 ~H~~~~~--~~~~~~~i~~~l~~~l~ 217 (220)
T 2fuk_A 194 SHFFHRK--LIDLRGALQHGVRRWLP 217 (220)
T ss_dssp CTTCTTC--HHHHHHHHHHHHGGGCS
T ss_pred Cceehhh--HHHHHHHHHHHHHHHhh
Confidence 9986542 22334456788887764
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=180.42 Aligned_cols=233 Identities=14% Similarity=0.040 Sum_probs=154.9
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccchHHHHHHHHC-CcEEEEEccCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLDR-GWVVAFADVRGGGGG 537 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~ 537 (726)
+.....+.+.+ +|.++ ++|++. +.+.|+||++|||.. ......|......|+++ ||+|+.+|||++++.
T Consensus 55 ~~~~~~~~~~~---~g~~~----~~p~~~--~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~ 125 (322)
T 3k6k_A 55 AEGVELTLTDL---GGVPC----IRQATD--GAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPEN 125 (322)
T ss_dssp CTTCEEEEEEE---TTEEE----EEEECT--TCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTS
T ss_pred CCCceEEEEEE---CCEeE----EecCCC--CCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCC
Confidence 34556666655 67554 466652 233455999999642 22334566667778765 999999999998764
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc----eeEEEEeCCccccccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL----FRAVVLEVPFLDATNT 613 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~ 613 (726)
. ....++|+.++++||.++ .+|++||+|+|+|+||.+++.++.++|+. ++++|+.+|++|+...
T Consensus 126 ~-----------~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~ 193 (322)
T 3k6k_A 126 P-----------FPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLS 193 (322)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCC
T ss_pred C-----------CchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccC
Confidence 2 235789999999999987 46899999999999999999999887765 8999999999986531
Q ss_pred ccCCCCCCChhhhcccCCCCChhHHHH----H--------HhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHH
Q 004866 614 LLYPILPLIAADYEEFGYPGDIDDFHA----I--------RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARV 681 (726)
Q Consensus 614 ~~~~~~~~~~~~~~~~g~~~~~~~~~~----~--------~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L 681 (726)
... .................. + ...+|+....+ ...|+|+++|+.|.. ..++.+++++|
T Consensus 194 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-~~pP~li~~G~~D~~--~~~~~~~~~~l 264 (322)
T 3k6k_A 194 RWS------NSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLS-GLPEMLIHVGSEEAL--LSDSTTLAERA 264 (322)
T ss_dssp SHH------HHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCT-TCCCEEEEEESSCTT--HHHHHHHHHHH
T ss_pred ccc------hhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCccccccc-CCCcEEEEECCcCcc--HHHHHHHHHHH
Confidence 100 000000000000111111 1 12356554433 346888888888865 46899999999
Q ss_pred HhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhhc
Q 004866 682 RESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++|++ ..+.+++++||++.. .....+....+.+||.++|+
T Consensus 265 ~~~g~~---~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (322)
T 3k6k_A 265 GAAGVS---VELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARIS 309 (322)
T ss_dssp HHTTCC---EEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCC---EEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHh
Confidence 999854 122228999998643 13344556678899999875
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=189.36 Aligned_cols=243 Identities=13% Similarity=0.100 Sum_probs=162.2
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH-HHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE-LKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
...+.+.++. +|..|+++++ |++ +++.|+||++||..+.. ..|... ...++++||.|+.+|+||+|.+...
T Consensus 133 ~~~~~~~i~~-~~~~l~~~~~-~~~---~~~~p~vv~~HG~~~~~--~~~~~~~~~~~~~~g~~vi~~D~~G~G~s~~~- 204 (405)
T 3fnb_A 133 IPLKSIEVPF-EGELLPGYAI-ISE---DKAQDTLIVVGGGDTSR--EDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQ- 204 (405)
T ss_dssp CCCEEEEEEE-TTEEEEEEEE-CCS---SSCCCEEEEECCSSCCH--HHHHHHTHHHHHHTTCEEEEECCTTSTTGGGG-
T ss_pred CCcEEEEEeE-CCeEEEEEEE-cCC---CCCCCEEEEECCCCCCH--HHHHHHHHHHHHhCCcEEEEEcCCCCcCCCCC-
Confidence 3456777776 6789999776 432 24469999999974432 233332 3367789999999999999976321
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC---C-
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY---P- 617 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~---~- 617 (726)
..........|+.+++++|..++ ++|+|+|+|+||++++.++.++| +++++|+.+|+.++...... .
T Consensus 205 ----~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~ 275 (405)
T 3fnb_A 205 ----GLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTA 275 (405)
T ss_dssp ----TCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC--
T ss_pred ----CCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhh
Confidence 11223356889999999998654 79999999999999999999988 89999999999987543210 0
Q ss_pred -CCCCCh-h--------------h-----hcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHH
Q 004866 618 -ILPLIA-A--------------D-----YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 676 (726)
Q Consensus 618 -~~~~~~-~--------------~-----~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~ 676 (726)
..|... . + ...++........+.+..+++...+.+ ++.|+|+++|+.|..||+.++.+
T Consensus 276 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~PvLii~G~~D~~v~~~~~~~ 354 (405)
T 3fnb_A 276 LKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNK-IDVPSLFLVGAGEDSELMRQSQV 354 (405)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGG-CCSCEEEEEETTSCHHHHHHHHH
T ss_pred hhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhh-CCCCEEEEecCCCcCCChHHHHH
Confidence 000000 0 0 001122211122334444555555665 88999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHHhhcC
Q 004866 677 WVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKMMES 726 (726)
Q Consensus 677 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~~ 726 (726)
++++|+.++.+ ..+.+++++.|++.. ..........+.+||.++|+.
T Consensus 355 l~~~l~~~~~~---~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 355 LYDNFKQRGID---VTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp HHHHHHHTTCC---EEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhccCCCC---ceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99999987643 223336665554322 233444456678999999863
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=182.99 Aligned_cols=242 Identities=11% Similarity=0.043 Sum_probs=153.5
Q ss_pred eEEEEEEE-CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccC--CCCC-
Q 004866 464 SCEQYDVP-SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVR--GGGG- 536 (726)
Q Consensus 464 ~~~~~~~~-s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~R--G~g~- 536 (726)
+.+.+.+. ..+|.++++.++.|++.. ++++|+||++||+.+.. ..|.. ....+.++|++|+.+|.+ |.+.
T Consensus 21 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~ 97 (283)
T 4b6g_A 21 SQQVWAHHAQTLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTE--QNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVP 97 (283)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCS--HHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSC
T ss_pred cEEEEEEechhhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEEecccccccccc
Confidence 44455554 457889999999998764 57899999999986643 23322 345666789999999964 4432
Q ss_pred --------CCCccccccccc-C-CCCcHHHH-HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 537 --------GGKKWHHDGRRT-K-KLNSIKDF-ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 537 --------~g~~~~~~~~~~-~-~~~~~~D~-~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
.|..|+...... + ....+.++ ...+..++++.+.+++|++|+|+||||++++.++.++|++|+++++.+
T Consensus 98 ~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s 177 (283)
T 4b6g_A 98 NDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFS 177 (283)
T ss_dssp CCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEES
T ss_pred ccccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhCCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEEC
Confidence 223322221111 0 11122333 333333333334467899999999999999999999999999999999
Q ss_pred CcccccccccCCCCCCChhhh-cccCCCCChhHHHHHHhcCcccccccC-CCCCeEEEEecCCCCcChH-HHHHHHHHHH
Q 004866 606 PFLDATNTLLYPILPLIAADY-EEFGYPGDIDDFHAIRNYSPYDNIQKD-VLYPAVLVTSSFNTRFGVW-EAAKWVARVR 682 (726)
Q Consensus 606 p~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~i~~~-~~~P~lli~g~~D~~V~~~-~~~~~~~~L~ 682 (726)
|+++.... ++..... ..+|... ..+..++|...+... ...|++++||+.|..|+.. ++.+++++|+
T Consensus 178 ~~~~~~~~------~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~ 246 (283)
T 4b6g_A 178 PILSPSLV------PWGEKAFTAYLGKDR-----EKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCR 246 (283)
T ss_dssp CCCCGGGS------HHHHHHHHHHHCSCG-----GGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHH
T ss_pred CccccccC------cchhhhHHhhcCCch-----HHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHH
Confidence 98876431 1111001 1123211 112345555544431 2348999999999988873 3899999999
Q ss_pred hcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 683 ESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++++ ..+.++++++|.+.. ........+.|+.++|.
T Consensus 247 ~~g~~---~~~~~~~g~~H~~~~---~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 247 AANQP---VDVRFHKGYDHSYYF---IASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHTCC---CEEEEETTCCSSHHH---HHHHHHHHHHHHHTTCC
T ss_pred HcCCC---ceEEEeCCCCcCHhH---HHHHHHHHHHHHHHhcC
Confidence 99864 122228999997422 12334567899998874
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=187.97 Aligned_cols=211 Identities=17% Similarity=0.127 Sum_probs=150.2
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
....+.+. +..+.+.+++|++. .++.|+||++|||... .....|......|+++||+|+.+|+||+++..
T Consensus 57 ~~~~i~y~---~~~~~~~~~~p~~~--~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~---- 127 (303)
T 4e15_A 57 TVDHLRYG---EGRQLVDVFYSEKT--TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT---- 127 (303)
T ss_dssp EEEEEECS---STTCEEEEEECTTC--CTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC----
T ss_pred ceeeeccC---CCCcEEEEEecCCC--CCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC----
Confidence 45555555 33456667788642 4578999999997532 23344666778899999999999999988642
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHcCC-------CceeEEEEeCCcccccccc
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINCCP-------DLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p-------~~f~a~v~~~p~~d~~~~~ 614 (726)
......|+.++++||.+. ...+++||+|+|+|+||++++.++.+.+ ++++++|+.+|++|+....
T Consensus 128 -------~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~ 200 (303)
T 4e15_A 128 -------LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELS 200 (303)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHH
T ss_pred -------hhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhh
Confidence 124678999999999873 2346899999999999999999988643 3799999999999876533
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHhcCcc-ccccc---CCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCC
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPY-DNIQK---DVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPK 690 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~-~~i~~---~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 690 (726)
... +.. ....++... +.+...||+ ..+.. ....|+|++||+.|..||+.++.+++++|+++|++
T Consensus 201 ~~~--~~~--~~~~~~~~~-----~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~--- 268 (303)
T 4e15_A 201 NLE--SVN--PKNILGLNE-----RNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYK--- 268 (303)
T ss_dssp TCT--TTS--GGGTTCCCT-----TTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCC---
T ss_pred ccc--ccc--hhhhhcCCH-----HHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCc---
Confidence 210 000 011122221 123566887 45553 12889999999999999999999999999998753
Q ss_pred CcEEEEcCCCCC
Q 004866 691 RPILLNLTTDIV 702 (726)
Q Consensus 691 ~~~~~~~~~gH~ 702 (726)
..+.+++++||+
T Consensus 269 ~~~~~~~g~~H~ 280 (303)
T 4e15_A 269 ASFTLFKGYDHF 280 (303)
T ss_dssp EEEEEEEEEETT
T ss_pred eEEEEeCCCCch
Confidence 122228999995
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-18 Score=172.89 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=159.9
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
.+.+.||.+|.++++.|.+ ++.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+..... ...
T Consensus 21 ~~~~~~g~~l~~~~~~~~~----~~~~~vv~~hG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~---~~~ 91 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG----TPKALIFVSHGAGEHS--GRYEELARMLMGLDLLVFAHDHVGHGQSEGERM---VVS 91 (303)
T ss_dssp EEECTTSCEEEEEEECCSS----CCSEEEEEECCTTCCG--GGGHHHHHHHHHTTEEEEEECCTTSTTSCSSTT---CCS
T ss_pred eEecCCCeEEEEEEeccCC----CCCeEEEEECCCCchh--hHHHHHHHHHHhCCCcEEEeCCCCCCCCCCCCC---CCC
Confidence 5788999999998876653 4579999999976543 468888899999999999999999997653211 111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc--------------
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL-------------- 614 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-------------- 614 (726)
......+|+.+.++++..+ .+..++.++|+|+||.+++.++.++|++++++|+.+|........
T Consensus 92 ~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
T 3pe6_A 92 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNS 169 (303)
T ss_dssp STHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHHH
Confidence 1123467888888888765 345799999999999999999999999999999999987653210
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHh--------------------cCc-ccccccCCCCCeEEEEecCCCCcChHH
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRN--------------------YSP-YDNIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------------~sp-~~~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
........... ..+- .........+.. ... ...+.+ ++.|+|+++|..|..|++..
T Consensus 170 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~l~i~g~~D~~~~~~~ 246 (303)
T 3pe6_A 170 VLPNLSSGPID-SSVL-SRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPK-LTVPFLLLQGSADRLCDSKG 246 (303)
T ss_dssp TCCSCCCCCCC-GGGT-CSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGG-CCSCEEEEEETTCSSBCHHH
T ss_pred hcccccCCccc-hhhh-hcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhc-CCCCEEEEeeCCCCCCChHH
Confidence 00000000000 0000 001111111111 001 123444 78999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHHhhc
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.++++.+...+ ..+.+++++||.... .....+.....++||.+++.
T Consensus 247 ~~~~~~~~~~~~-----~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~ 295 (303)
T 3pe6_A 247 AYLLMELAKSQD-----KTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTA 295 (303)
T ss_dssp HHHHHHHCCCSS-----EEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccCC-----ceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCC
Confidence 999998886433 123337899997544 23344556677899998764
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=193.48 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=167.0
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc----------------------hHHHHH
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW----------------------RSELKS 518 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~----------------------~~~~~~ 518 (726)
..+..+.+.++++||.+|.++++.|++ .++.|+||..|| |+....+.+ ....+.
T Consensus 37 ~~~~~~~v~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~p-yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 112 (560)
T 3iii_A 37 EMIMEKDGTVEMRDGEKLYINIFRPNK---DGKFPVVMSADT-YGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGF 112 (560)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEECSS---SSCEEEEEEEES-SCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHH
T ss_pred ceEEEEEEEEECCCCcEEEEEEEecCC---CCCCCEEEEecC-CCCCcccccccccccccccccccccccccccCCCHHH
Confidence 356778899999999999999999985 367999999885 232211111 123688
Q ss_pred HHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCce
Q 004866 519 LLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598 (726)
Q Consensus 519 l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f 598 (726)
|+++||+|+.+|+||+|+++..|.. .+....+|+.++++||.+++++| +||+++|+||||+++++++.+.|+.+
T Consensus 113 la~~Gy~vv~~D~RG~G~S~G~~~~-----~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l 186 (560)
T 3iii_A 113 WVPNDYVVVKVALRGSDKSKGVLSP-----WSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHL 186 (560)
T ss_dssp HGGGTCEEEEEECTTSTTCCSCBCT-----TSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTE
T ss_pred HHhCCCEEEEEcCCCCCCCCCcccc-----CChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCce
Confidence 9999999999999999999877652 23467999999999999998888 89999999999999999999899999
Q ss_pred eEEEEeCCcccccccccC-CCCC-CC--hhhhc----cc--------------CCCCChhHHHHHHhcCcccccccCCCC
Q 004866 599 RAVVLEVPFLDATNTLLY-PILP-LI--AADYE----EF--------------GYPGDIDDFHAIRNYSPYDNIQKDVLY 656 (726)
Q Consensus 599 ~a~v~~~p~~d~~~~~~~-~~~~-~~--~~~~~----~~--------------g~~~~~~~~~~~~~~sp~~~i~~~~~~ 656 (726)
+|+|+.+|+.|+...... ...+ .. ..++. .| ..|... +++++.++ ++.+ ++.
T Consensus 187 ~aiv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d---~~W~~~~~--~~~~-I~v 260 (560)
T 3iii_A 187 KAMIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFD---DFWKQRQV--PLSQ-IKT 260 (560)
T ss_dssp EEEEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSC---HHHHTTBC--CGGG-CCS
T ss_pred EEEEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcc---hHhhccCC--chhh-CCC
Confidence 999999999997642111 1111 00 01111 01 111110 23444454 4565 899
Q ss_pred CeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 657 PAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 657 P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|+|++.|-.|..+...++.+.+++|+..+ ..+..-+.+|.. .. -........+.|+.++|.
T Consensus 261 Pvl~v~Gw~D~~~~~~g~l~~y~~l~~~~------k~l~ih~~~~~~-~~-~~~~~~~~~~~wfD~~Lk 321 (560)
T 3iii_A 261 PLLTCASWSTQGLHNRGSFEGFKQAASEE------KWLYVHGRKEWE-SY-YARENLERQKSFFDFYLK 321 (560)
T ss_dssp CEEEEEEGGGTTTTHHHHHHHHHHCCCSS------EEEEEESSCHHH-HH-HSHHHHHHHHHHHHHHTS
T ss_pred CEEEeCCcCCCcccchhHHHHHHhccccC------cEEEECCCCCcC-cc-cChhHHHHHHHHHHHHhC
Confidence 99999998897677788888888887543 122121222321 10 011234556899999983
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-18 Score=171.20 Aligned_cols=241 Identities=16% Similarity=0.098 Sum_probs=155.8
Q ss_pred CceEEEEEE-ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 462 FYSCEQYDV-PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 462 ~~~~~~~~~-~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
..+.+.+.+ .+.||.+|.+....+.+ .+.|+||++||+.+......+......|+++||.|+.+|+||+|.+...
T Consensus 8 ~~~~~~~~~~~~~~g~~l~~~~~~~~~----~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~ 83 (270)
T 3llc_A 8 PIETHAITVGQGSDARSIAALVRAPAQ----DERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGA 83 (270)
T ss_dssp CEEEEEEEESSGGGCEEEEEEEECCSS----TTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCSC
T ss_pred CCCcceEEEeeccCcceEEEEeccCCC----CCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCCc
Confidence 345566666 66799998876544331 2368999999976653333334456777789999999999999977543
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc---CC---CceeEEEEeCCcccccccc
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC---CP---DLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~---~p---~~f~a~v~~~p~~d~~~~~ 614 (726)
.. ...++++.+.+..+++. ...+++.++|+|+||.+++.++.+ +| ++++++|+.+|..++....
T Consensus 84 ~~--------~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~ 153 (270)
T 3llc_A 84 FR--------DGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDL 153 (270)
T ss_dssp GG--------GCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHT
T ss_pred cc--------cccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhh
Confidence 22 23555555555444432 125799999999999999999999 99 9999999999988765422
Q ss_pred cCCCCCCC-hhhh---------cccC-CC--CChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHH
Q 004866 615 LYPILPLI-AADY---------EEFG-YP--GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARV 681 (726)
Q Consensus 615 ~~~~~~~~-~~~~---------~~~g-~~--~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L 681 (726)
........ .... ..+. .+ ......+..........+.+ ++.|+++++|..|..||+.++.++++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~g~~D~~v~~~~~~~~~~~~ 232 (270)
T 3llc_A 154 IEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMID-TGCPVHILQGMADPDVPYQHALKLVEHL 232 (270)
T ss_dssp TGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCC-CCSCEEEEEETTCSSSCHHHHHHHHHTS
T ss_pred hhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhc-CCCCEEEEecCCCCCCCHHHHHHHHHhc
Confidence 11111100 0000 0011 11 11233444555555666665 8899999999999999999999998887
Q ss_pred HhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 682 RESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.... ..+.+++++||+.............+.+||.+
T Consensus 233 ~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 233 PADD-----VVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp CSSS-----EEEEEETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred CCCC-----eeEEEeCCCcccccccccHHHHHHHHHHHhcC
Confidence 6521 12223789999654433333444456677754
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-19 Score=179.70 Aligned_cols=216 Identities=19% Similarity=0.176 Sum_probs=137.8
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
+..+.||++||..++. ..|...+..|+++||.|+++|+||+|.+........ .....+|+.+++++|.+.
T Consensus 49 G~~~~VlllHG~~~s~--~~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~~~~~----~~~~~~d~~~~~~~l~~~---- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGSP--QSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAAST----ASDWTADIVAAMRWLEER---- 118 (281)
T ss_dssp CSSEEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEECCCTTSSSCHHHHHTCC----HHHHHHHHHHHHHHHHHH----
T ss_pred CCCceEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccCCC----HHHHHHHHHHHHHHHHhC----
Confidence 3456788999865533 468888999999999999999999997633221110 111256777777777653
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc-----cCCCCCC---------ChhhhcccCCCCCh-h
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL-----LYPILPL---------IAADYEEFGYPGDI-D 636 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-----~~~~~~~---------~~~~~~~~g~~~~~-~ 636 (726)
.+++.|+|+||||.+++.++.++|++++++|+.+|...+.... .....+. ......++..+..+ .
T Consensus 119 ~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
T 4fbl_A 119 CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVP 198 (281)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEGG
T ss_pred CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCchH
Confidence 3689999999999999999999999999999999976543210 0000000 00001111111110 0
Q ss_pred HHHHHHhcC--cccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHH
Q 004866 637 DFHAIRNYS--PYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESA 714 (726)
Q Consensus 637 ~~~~~~~~s--p~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 714 (726)
....+.... .-..+.+ ++.|+|+|+|+.|..||+.++.++++++.... ..+.+++++||......+......
T Consensus 199 ~~~~~~~~~~~~~~~l~~-i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~~-----~~l~~~~~~gH~~~~e~~~e~v~~ 272 (281)
T 4fbl_A 199 AIKHLITIGAVAEMLLPR-VKCPALIIQSREDHVVPPHNGELIYNGIGSTE-----KELLWLENSYHVATLDNDKELILE 272 (281)
T ss_dssp GHHHHHHHHHHHHHHGGG-CCSCEEEEEESSCSSSCTHHHHHHHHHCCCSS-----EEEEEESSCCSCGGGSTTHHHHHH
T ss_pred HHHHHHHhhhhccccccc-cCCCEEEEEeCCCCCcCHHHHHHHHHhCCCCC-----cEEEEECCCCCcCccccCHHHHHH
Confidence 111111100 0122444 88999999999999999999999998886433 123337999996433222333445
Q ss_pred HHHHHHHHh
Q 004866 715 LETAFLIKM 723 (726)
Q Consensus 715 ~~~~fl~~~ 723 (726)
.+.+||.+|
T Consensus 273 ~i~~FL~~H 281 (281)
T 4fbl_A 273 RSLAFIRKH 281 (281)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 678999876
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-18 Score=170.95 Aligned_cols=219 Identities=15% Similarity=0.027 Sum_probs=147.5
Q ss_pred CCceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCC--c---cchHHHHHHHHC----CcEEEEEc
Q 004866 461 EFYSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD--K---RWRSELKSLLDR----GWVVAFAD 530 (726)
Q Consensus 461 ~~~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~--~---~~~~~~~~l~~~----G~~v~~~d 530 (726)
...+.+.+.+.+. +|..+++.++.|++...++++|+||++||+.+.... . .+......|+++ ||+|+.+|
T Consensus 28 ~~g~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d 107 (268)
T 1jjf_A 28 PRGQVVNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPN 107 (268)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEEC
T ss_pred CCceEEEEEEeccccCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeC
Confidence 4567778888764 678999999999986556789999999997654311 1 122345677776 59999999
Q ss_pred cCCCCCCCCcccccccccCCCCcHHH-HHHHHHHHHHcCCC--CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 531 VRGGGGGGKKWHHDGRRTKKLNSIKD-FISCARFLIEKEIV--KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 531 ~RG~g~~g~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+|+.+.. +.. + + ....+| +.++++++.++..+ |++||+|+|+|+||++++.++.++|++|+++++.+|.
T Consensus 108 ~~~~~~~---~~~-~---~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~ 179 (268)
T 1jjf_A 108 TNAAGPG---IAD-G---Y-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAA 179 (268)
T ss_dssp CCCCCTT---CSC-H---H-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCC
T ss_pred CCCCCcc---ccc-c---H-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCC
Confidence 9987631 100 0 0 011233 33455666554333 8999999999999999999999999999999999997
Q ss_pred ccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCC-eEEEEecCCCCcChHHHHHHHHHHHhcCC
Q 004866 608 LDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYP-AVLVTSSFNTRFGVWEAAKWVARVRESTI 686 (726)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P-~lli~g~~D~~V~~~~~~~~~~~L~~~~~ 686 (726)
.++... ...+.... .. .. .+.| ++++||+.|..||. +.+++++|+++++
T Consensus 180 ~~~~~~------------~~~~~~~~--~~------------~~--~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~g~ 229 (268)
T 1jjf_A 180 PNTYPN------------ERLFPDGG--KA------------AR--EKLKLLFIACGTNDSLIGF--GQRVHEYCVANNI 229 (268)
T ss_dssp TTSCCH------------HHHCTTTT--HH------------HH--HHCSEEEEEEETTCTTHHH--HHHHHHHHHHTTC
T ss_pred CCCCch------------hhhcCcch--hh------------hh--hcCceEEEEecCCCCCccH--HHHHHHHHHHCCC
Confidence 764310 01121111 00 01 2345 88899999988874 7889999999885
Q ss_pred CCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 687 YDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 687 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
+ ..+.++++++|++.. ......+.+.||.++
T Consensus 230 ~---~~~~~~~g~~H~~~~---~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 230 N---HVYWLIQGGGHDFNV---WKPGLWNFLQMADEA 260 (268)
T ss_dssp C---CEEEEETTCCSSHHH---HHHHHHHHHHHHHHH
T ss_pred c---eEEEEcCCCCcCHhH---HHHHHHHHHHHHHhc
Confidence 4 122228999997532 123345667888875
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=171.83 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=152.2
Q ss_pred CCceEEEEEEECC--CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCC
Q 004866 461 EFYSCEQYDVPSH--DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG 538 (726)
Q Consensus 461 ~~~~~~~~~~~s~--dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g 538 (726)
..+..+.+.+++. +|.. .+.+++|... .+++.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+.
T Consensus 21 g~~~~~~~~~~~~~~~~~~-~~~l~~p~~~-~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 96 (262)
T 1jfr_A 21 GPYATSQTSVSSLVASGFG-GGTIYYPTST-ADGTFGAVVISPGFTAYQ--SSIAWLGPRLASQGFVVFTIDTNTTLDQP 96 (262)
T ss_dssp CSSCEEEEEECTTTCSSSC-CEEEEEESCC-TTCCEEEEEEECCTTCCG--GGTTTHHHHHHTTTCEEEEECCSSTTCCH
T ss_pred CCCCccceEecceeccCCC-ceeEEecCCC-CCCCCCEEEEeCCcCCCc--hhHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 4567777888776 4432 4567888753 246789999999976543 45677788899999999999999988542
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHH----cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIE----KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
. ....|+.++++++.+ ...++.++++++|+|+||++++.++.++|+ ++++|+.+|+..
T Consensus 97 ~------------~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~----- 158 (262)
T 1jfr_A 97 D------------SRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT----- 158 (262)
T ss_dssp H------------HHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----
T ss_pred c------------hhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-----
Confidence 1 245788899999987 345678899999999999999999999998 799998777431
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHH-HHHHHHHHHhcCCCCCCCcE
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWE-AAKWVARVRESTIYDPKRPI 693 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~-~~~~~~~L~~~~~~~~~~~~ 693 (726)
...+.+ ++.|+|+++|..|..|++.+ +.++++.+.. +.+ ..+
T Consensus 159 --------------------------------~~~~~~-~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~-~~~---~~~ 201 (262)
T 1jfr_A 159 --------------------------------DKTWPE-LRTPTLVVGADGDTVAPVATHSKPFYESLPG-SLD---KAY 201 (262)
T ss_dssp --------------------------------CCCCTT-CCSCEEEEEETTCSSSCTTTTHHHHHHHSCT-TSC---EEE
T ss_pred --------------------------------cccccc-cCCCEEEEecCccccCCchhhHHHHHHHhhc-CCC---ceE
Confidence 112333 67899999999999999998 9999999954 211 122
Q ss_pred EEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 694 LLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 694 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.+++++||..... ...+....+.+||.++|.
T Consensus 202 ~~~~~~~H~~~~~-~~~~~~~~i~~fl~~~l~ 232 (262)
T 1jfr_A 202 LELRGASHFTPNT-SDTTIAKYSISWLKRFID 232 (262)
T ss_dssp EEETTCCTTGGGS-CCHHHHHHHHHHHHHHHS
T ss_pred EEeCCCCcCCccc-chHHHHHHHHHHHHHHhc
Confidence 2278999975431 123445567899998874
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-18 Score=171.48 Aligned_cols=232 Identities=12% Similarity=0.029 Sum_probs=151.3
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccch-HHHHHHHHCCcEEEEEccCCCCCCCCcccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 543 (726)
+...+.+.||.+|++.++.|++ +++.|+||++||+... .....|. .....|.+. |.|+.+|+||+++..
T Consensus 4 ~~~~~~~~dg~~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~----- 74 (275)
T 3h04_A 4 IKYKVITKDAFALPYTIIKAKN---QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS----- 74 (275)
T ss_dssp EEEEEECTTSCEEEEEEECCSS---SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC-----
T ss_pred eEEEEecCCcEEEEEEEEccCC---CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc-----
Confidence 4567889999999999888763 2467999999997621 1223343 455566566 999999999987541
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCC---
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP--- 620 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~--- 620 (726)
.....+|+.++++++.++ .+.++++|+|+|+||.+++.++.+ ++++++|+.+|+.++..........
T Consensus 75 ------~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~~ 144 (275)
T 3h04_A 75 ------LDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYYA 144 (275)
T ss_dssp ------HHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHHH
T ss_pred ------cchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchhh
Confidence 124688999999999986 567899999999999999999997 7899999999998763221100000
Q ss_pred -----CChhhhcc------cCCCCChhHHHH---HHh-------cC-----------cccccccCCCCCeEEEEecCCCC
Q 004866 621 -----LIAADYEE------FGYPGDIDDFHA---IRN-------YS-----------PYDNIQKDVLYPAVLVTSSFNTR 668 (726)
Q Consensus 621 -----~~~~~~~~------~g~~~~~~~~~~---~~~-------~s-----------p~~~i~~~~~~P~lli~g~~D~~ 668 (726)
+....... ............ ... +. ....+.+ ++ |+|+++|+.|..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-P~lii~G~~D~~ 222 (275)
T 3h04_A 145 KIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKT-LP-PVFIAHCNGDYD 222 (275)
T ss_dssp HHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTT-CC-CEEEEEETTCSS
T ss_pred cccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhcc-CC-CEEEEecCCCCC
Confidence 00000000 000000000000 000 00 0011133 56 999999999999
Q ss_pred cChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc--hhhHHHHHHHHHHHHHHhhc
Q 004866 669 FGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN--RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 669 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~ 725 (726)
||+.++.++++++... + +.+++++||+... .....+....+.+||.++|.
T Consensus 223 ~~~~~~~~~~~~~~~~------~-~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 223 VPVEESEHIMNHVPHS------T-FERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp SCTHHHHHHHTTCSSE------E-EEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHhcCCc------e-EEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999888766542 1 2237999998644 22124556677899999875
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=185.47 Aligned_cols=239 Identities=12% Similarity=0.026 Sum_probs=158.7
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
....+.+.++. +|..|+++++.|++ +++.|+||++||..+.. ...+......|+++||.|+.+|+||+|.....-
T Consensus 165 ~~~~~~v~i~~-~g~~l~~~~~~P~~---~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~~ 239 (415)
T 3mve_A 165 KYIIKQLEIPF-EKGKITAHLHLTNT---DKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYP 239 (415)
T ss_dssp SSEEEEEEEEC-SSSEEEEEEEESCS---SSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTTSGGGTTSC
T ss_pred CCCeEEEEEEE-CCEEEEEEEEecCC---CCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCC
Confidence 34678888987 88899999998875 35789999999965432 233444567788899999999999998753211
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc--cCCCC
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--LYPIL 619 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~--~~~~~ 619 (726)
..........++++++.+.+.+|++||+|+|+|+||++++.++..+|++++++|+.+|+++..... .....
T Consensus 240 -------~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~ 312 (415)
T 3mve_A 240 -------LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQM 312 (415)
T ss_dssp -------CCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTS
T ss_pred -------CCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHh
Confidence 111122333567788888888899999999999999999999998999999999999986532110 00111
Q ss_pred CCCh--hhhcccCCC-CCh-hHHHHHHhcCcccc----cccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCC
Q 004866 620 PLIA--ADYEEFGYP-GDI-DDFHAIRNYSPYDN----IQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 620 ~~~~--~~~~~~g~~-~~~-~~~~~~~~~sp~~~----i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 691 (726)
+... .....+|.. ... .....+..+++... +.+ ++.|+|+++|+.|..||+.++.++++.... .
T Consensus 313 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~PvLii~G~~D~~vp~~~~~~l~~~~~~-------~ 384 (415)
T 3mve_A 313 PKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRK-TKVPILAMSLEGDPVSPYSDNQMVAFFSTY-------G 384 (415)
T ss_dssp CHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSC-BSSCEEEEEETTCSSSCHHHHHHHHHTBTT-------C
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCC-CCCCEEEEEeCCCCCCCHHHHHHHHHhCCC-------c
Confidence 1100 001112322 221 22233444555432 233 789999999999999999998887763221 1
Q ss_pred cEEEEcC-CCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 692 PILLNLT-TDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 692 ~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.+.++++ .+| ....+....+.+||.++|.
T Consensus 385 ~l~~i~g~~~h-----~~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 385 KAKKISSKTIT-----QGYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp EEEEECCCSHH-----HHHHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCCcc-----cchHHHHHHHHHHHHHHhc
Confidence 2222566 333 2334455677899999875
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-18 Score=178.72 Aligned_cols=253 Identities=17% Similarity=0.060 Sum_probs=159.1
Q ss_pred CCCceEEEEEEECCC--C--cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccc-----hHHHHHHH-HCCcEEEE
Q 004866 460 SEFYSCEQYDVPSHD--G--ISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRW-----RSELKSLL-DRGWVVAF 528 (726)
Q Consensus 460 ~~~~~~~~~~~~s~d--G--~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~-----~~~~~~l~-~~G~~v~~ 528 (726)
+......++.|.+.| | ..+.++++.|++. .++.|+|++.||..... ..+++ ......|+ ++||+|+.
T Consensus 38 ~~~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~ 115 (377)
T 4ezi_A 38 HYDLQLYKINYKTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVM 115 (377)
T ss_dssp CCCEEEEEEEEEEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEE
T ss_pred CCCcEEEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEE
Confidence 567888899998866 5 4567899999864 36789999999975421 12221 13345677 99999999
Q ss_pred EccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH-cCCCCCCcEEEEEecccHHHHHHHHHcCC----C-ceeEEE
Q 004866 529 ADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE-KEIVKEHKLAGWGYSAGGLLVAAAINCCP----D-LFRAVV 602 (726)
Q Consensus 529 ~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~l~~~~~~~~p----~-~f~a~v 602 (726)
+|+||.|+++...+.-.........+.|.+.++..+.+ .+..+.+||+++|+|+||+++++++..+| + .+++++
T Consensus 116 ~D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~ 195 (377)
T 4ezi_A 116 PDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVA 195 (377)
T ss_dssp ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEE
T ss_pred eCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEE
Confidence 99999998764211100000111234455555544443 35557799999999999999999987654 3 589999
Q ss_pred EeCCccccccccc----CC--------------------CCCC-----Ch---hhhcc-c-C----------CC------
Q 004866 603 LEVPFLDATNTLL----YP--------------------ILPL-----IA---ADYEE-F-G----------YP------ 632 (726)
Q Consensus 603 ~~~p~~d~~~~~~----~~--------------------~~~~-----~~---~~~~~-~-g----------~~------ 632 (726)
+.++..|+...+. .. ..|. .. ..... + + .+
T Consensus 196 ~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (377)
T 4ezi_A 196 PGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLI 275 (377)
T ss_dssp EESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGG
T ss_pred ecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHH
Confidence 9999888654210 00 0000 00 00000 0 0 00
Q ss_pred ------------CChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcC--
Q 004866 633 ------------GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLT-- 698 (726)
Q Consensus 633 ------------~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~-- 698 (726)
.++...+.+.+.+... ..++.|++++||..|..||+.++.+++++++++|. . . +..+++
T Consensus 276 ~~~~~~~~~~~~~~p~~~~~l~~~~~~~---~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v--~-~~~~~~~~ 348 (377)
T 4ezi_A 276 FQPKFSNGIISKTDRNTEILKINFNHYD---FKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-F--V-WIKSVSDA 348 (377)
T ss_dssp BCHHHHHHHHTTCSTTHHHHHHHHCCCC---SCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-C--E-EEEESCSS
T ss_pred hchhhhhhcccccchHHHHHHHHhcccC---CCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-E--E-EEEcCCCC
Confidence 0011111122222221 12678999999999999999999999999998872 1 1 222788
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 699 TDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 699 ~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.+|+.. ......+.++||.++++
T Consensus 349 ~~H~~~----~~~~~~~~~~wl~~~~~ 371 (377)
T 4ezi_A 349 LDHVQA----HPFVLKEQVDFFKQFER 371 (377)
T ss_dssp CCTTTT----HHHHHHHHHHHHHHHHT
T ss_pred CCccCh----HHHHHHHHHHHHHHhhc
Confidence 899643 23455677899998874
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=174.38 Aligned_cols=231 Identities=16% Similarity=0.088 Sum_probs=154.9
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccchHHHHHHH-HCCcEEEEEccCCCCCCCCcc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLL-DRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~~ 541 (726)
..+.+.+++.|| .|++.++ +. .++.|+||++|||.. ......|......|+ +.||.|+.+|+||+|++.
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~--- 125 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK--- 125 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC---
T ss_pred eEEEEEecCCCC-cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCC---
Confidence 688899999998 8998877 42 356799999999752 123345777778888 579999999999998752
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCCc----eeEEEEeCCcccccccc
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPDL----FRAVVLEVPFLDATNTL 614 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~~ 614 (726)
.....+|+.++++|+.+.. .+|++||+|+|+|+||.+++.++.++|+. ++++|+.+|++++....
T Consensus 126 --------~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~ 197 (311)
T 1jji_A 126 --------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPT 197 (311)
T ss_dssp --------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCC
T ss_pred --------CCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCCC
Confidence 2246789999999998752 36788999999999999999999887765 99999999998864210
Q ss_pred c----CCCCC--CChh---h-hccc-CCCCChhHHHHHHhcCccc-ccccCCCCCeEEEEecCCCCcChHHHHHHHHHHH
Q 004866 615 L----YPILP--LIAA---D-YEEF-GYPGDIDDFHAIRNYSPYD-NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVR 682 (726)
Q Consensus 615 ~----~~~~~--~~~~---~-~~~~-g~~~~~~~~~~~~~~sp~~-~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~ 682 (726)
. ....+ +... + +..+ +.+.. . .....+|+. .+.. -.|+++++|+.|..+ .++.+++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~p~~~~l~~--~~P~li~~G~~D~l~--~~~~~~~~~l~ 269 (311)
T 1jji_A 198 PSLLEFGEGLWILDQKIMSWFSEQYFSREED--K--FNPLASVIFADLEN--LPPALIITAEYDPLR--DEGEVFGQMLR 269 (311)
T ss_dssp HHHHHTSSSCSSCCHHHHHHHHHHHCSSGGG--G--GCTTTSGGGSCCTT--CCCEEEEEEEECTTH--HHHHHHHHHHH
T ss_pred ccHHHhcCCCccCCHHHHHHHHHHhCCCCcc--C--CCcccCcccccccC--CChheEEEcCcCcch--HHHHHHHHHHH
Confidence 0 00000 0000 0 0000 11000 0 001234543 2222 258899999999876 47889999999
Q ss_pred hcCCCCCCCcEEEEcCCCCCCCc-h---hhHHHHHHHHHHHHHH
Q 004866 683 ESTIYDPKRPILLNLTTDIVEEN-R---YLQCKESALETAFLIK 722 (726)
Q Consensus 683 ~~~~~~~~~~~~~~~~~gH~~~~-~---~~~~~~~~~~~~fl~~ 722 (726)
+++++ ..+.++++++|++.. . ....+....+.+||.+
T Consensus 270 ~~g~~---~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 270 RAGVE---ASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HTTCC---EEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HcCCC---EEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 98853 122228999998643 1 2333445566788764
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=168.70 Aligned_cols=187 Identities=10% Similarity=0.023 Sum_probs=127.4
Q ss_pred CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH---c
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE---K 567 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~---~ 567 (726)
++..|+||++||. +.. ...|....+.|...|+.|++||.+|.+.|+..+...... ....+++..+.++.+++ .
T Consensus 19 ~~a~~~Vv~lHG~-G~~-~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 19 QRAKKAVVMLHGR-GGT-AADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQ--NQPALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TTCSEEEEEECCT-TCC-HHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGG--GTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCC-CCC-HHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCccc--chHHHHHHHHHHHHHHHHHHH
Confidence 3456899999983 221 233555556666789999999999877665544432222 12345554444444433 2
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcc
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPY 647 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~ 647 (726)
..+|++||+++|+|+||++++.++.++|++|+++|+.+|.+.... . .. .+
T Consensus 95 ~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~------~--~~---~~------------------- 144 (210)
T 4h0c_A 95 QGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQE------L--AI---GN------------------- 144 (210)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSS------C--CG---GG-------------------
T ss_pred hCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChh------h--hh---hh-------------------
Confidence 347999999999999999999999999999999998877432110 0 00 00
Q ss_pred cccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 648 DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 648 ~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
......+.|++++||..|++||+.++++++++|+++|. ++.+ |++.||+... ++..+..+||.|
T Consensus 145 -~~~~~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~-----~v~~~~ypg~gH~i~~-----~el~~i~~wL~k 210 (210)
T 4h0c_A 145 -YKGDFKQTPVFISTGNPDPHVPVSRVQESVTILEDMNA-----AVSQVVYPGRPHTISG-----DEIQLVNNTILK 210 (210)
T ss_dssp -CCBCCTTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTC-----EEEEEEEETCCSSCCH-----HHHHHHHHTTTC
T ss_pred -hhhhccCCceEEEecCCCCccCHHHHHHHHHHHHHCCC-----CeEEEEECCCCCCcCH-----HHHHHHHHHHcC
Confidence 00011357999999999999999999999999999984 3444 8999997532 344556677653
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=173.73 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=147.8
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC-CCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY-GELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
..++-.+|..+.+.++.|++ ++.|+||++|||. .......|......|+++||.|+.+|+||++++.
T Consensus 41 ~~i~~~~~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~-------- 108 (262)
T 2pbl_A 41 LNLSYGEGDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-------- 108 (262)
T ss_dssp EEEESSSSTTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC--------
T ss_pred cccccCCCCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCC--------
Confidence 34554566667777777764 4579999999964 2233456777788899999999999999987531
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC------CCceeEEEEeCCcccccccccCCCCC
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC------PDLFRAVVLEVPFLDATNTLLYPILP 620 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~ 620 (726)
.....+|+.++++++..+.. ++++++|+|+||++++.++.++ |++++++|+.+|+.++...... .
T Consensus 109 ---~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~-~-- 179 (262)
T 2pbl_A 109 ---ISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT-S-- 179 (262)
T ss_dssp ---HHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS-T--
T ss_pred ---hHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhh-h--
Confidence 12357899999999987643 7999999999999999999887 8999999999999886532211 0
Q ss_pred CChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCC
Q 004866 621 LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTD 700 (726)
Q Consensus 621 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 700 (726)
.. ..+.. ..+.+...+|...+.. ++.|+|+++|+.|..||+.++.++++++. + +.+ +++++|
T Consensus 180 -~~---~~~~~-----~~~~~~~~~~~~~~~~-~~~P~lii~G~~D~~~~~~~~~~~~~~~~---~----~~~-~~~~~~ 241 (262)
T 2pbl_A 180 -MN---EKFKM-----DADAAIAESPVEMQNR-YDAKVTVWVGGAERPAFLDQAIWLVEAWD---A----DHV-IAFEKH 241 (262)
T ss_dssp -TH---HHHCC-----CHHHHHHTCGGGCCCC-CSCEEEEEEETTSCHHHHHHHHHHHHHHT---C----EEE-EETTCC
T ss_pred -hh---hhhCC-----CHHHHHhcCcccccCC-CCCCEEEEEeCCCCcccHHHHHHHHHHhC---C----eEE-EeCCCC
Confidence 00 01111 1234567788887776 88999999999999999999999999997 2 223 379999
Q ss_pred CCCC
Q 004866 701 IVEE 704 (726)
Q Consensus 701 H~~~ 704 (726)
|+..
T Consensus 242 H~~~ 245 (262)
T 2pbl_A 242 HFNV 245 (262)
T ss_dssp TTTT
T ss_pred cchH
Confidence 9754
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-18 Score=170.56 Aligned_cols=236 Identities=13% Similarity=0.030 Sum_probs=150.6
Q ss_pred ceEEEEEEEC-CCCcEEEEEEEEcCCCC----CCCCccEEEEEcCCCCCCCCccchH--HHHHHHH-CCcEEEEEccCCC
Q 004866 463 YSCEQYDVPS-HDGISVPLTIIYSPKYK----KENQNPGLLHGHGAYGELLDKRWRS--ELKSLLD-RGWVVAFADVRGG 534 (726)
Q Consensus 463 ~~~~~~~~~s-~dG~~i~~~l~~p~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~-~G~~v~~~d~RG~ 534 (726)
+..+.+++.+ .+|..++++++.|++.. ++++.|+||++||+.+.. ..|.. ....+++ .|++|+.+|+|++
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 82 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNH--NSWLKRTNVERLLRGTNLIVVMPNTSNG 82 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCT--THHHHHSCHHHHTTTCCCEEEECCCTTS
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCH--HHHHhccCHHHHHhcCCeEEEEECCCCC
Confidence 4566677765 46889999999998752 356789999999986643 34544 3455554 7999999999987
Q ss_pred CCCCCcccccccccCCCCcH----HHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccc
Q 004866 535 GGGGKKWHHDGRRTKKLNSI----KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 535 g~~g~~~~~~~~~~~~~~~~----~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~ 610 (726)
+..... ...... +|+...++.+..+..+|+++++|+|+|+||++++.++. +|++|+++|+.+|..++
T Consensus 83 ~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~ 153 (263)
T 2uz0_A 83 WYTDTQ--------YGFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSF 153 (263)
T ss_dssp TTSBCT--------TSCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCS
T ss_pred ccccCC--------CcccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcch
Confidence 642111 111122 34444444443324568899999999999999999999 89999999999999876
Q ss_pred cccccCCCCCCChhhh-cccCCCCChhHHHHHHhcCcccccccCCC--CCeEEEEecCCCCcChHHHHHHHHHHHhcCCC
Q 004866 611 TNTLLYPILPLIAADY-EEFGYPGDIDDFHAIRNYSPYDNIQKDVL--YPAVLVTSSFNTRFGVWEAAKWVARVRESTIY 687 (726)
Q Consensus 611 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~i~~~~~--~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~ 687 (726)
...............+ ..++.+.. ..+..++|...+.+ .+ .|++++||..|..|+ ++.+++++|++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~p~li~~G~~D~~v~--~~~~~~~~l~~~g~- 225 (263)
T 2uz0_A 154 QNFSPESQNLGSPAYWRGVFGEIRD----WTTSPYSLESLAKK-SDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGF- 225 (263)
T ss_dssp SSCCGGGTTCSCHHHHHHHHCCCSC----TTTSTTSHHHHGGG-CCSCSEEEEEEETTSTTHH--HHHHHHHHHHHTTC-
T ss_pred hhccccccccccchhHHHHcCChhh----hccccCCHHHHHHh-ccCCCeEEEEeCCCchhhH--HHHHHHHHHHHCCC-
Confidence 5311000000000001 11233221 11234566655554 33 689999999998774 57899999999874
Q ss_pred CCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 688 DPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 688 ~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
++.+ +++ ||.+.. ..+.....++||.++|.
T Consensus 226 ----~~~~~~~~g-~H~~~~---~~~~~~~~~~~l~~~l~ 257 (263)
T 2uz0_A 226 ----DVTYSHSAG-THEWYY---WEKQLEVFLTTLPIDFK 257 (263)
T ss_dssp ----EEEEEEESC-CSSHHH---HHHHHHHHHHHSSSCCC
T ss_pred ----CeEEEECCC-CcCHHH---HHHHHHHHHHHHHhhcc
Confidence 2333 777 996422 12445667899987764
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-18 Score=174.94 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=149.2
Q ss_pred eEEEEEEE--CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 464 SCEQYDVP--SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 464 ~~~~~~~~--s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
......+. +.+|.. .+.+++|.+. .+.|+||++||..+.. ..|......|+++||.|+.+|+||.|+...
T Consensus 68 ~~~~~~~~~~~~~g~~-~~~~~~p~~~---~~~p~vv~~HG~~~~~--~~~~~~~~~la~~G~~vv~~d~~g~g~s~~-- 139 (306)
T 3vis_A 68 SVSEERASRFGADGFG-GGTIYYPREN---NTYGAIAISPGYTGTQ--SSIAWLGERIASHGFVVIAIDTNTTLDQPD-- 139 (306)
T ss_dssp CEEEEEECTTTCSSSC-CEEEEEESSC---SCEEEEEEECCTTCCH--HHHHHHHHHHHTTTEEEEEECCSSTTCCHH--
T ss_pred cceeeeeeccccCCCc-ceEEEeeCCC---CCCCEEEEeCCCcCCH--HHHHHHHHHHHhCCCEEEEecCCCCCCCcc--
Confidence 34444444 356654 3467788753 2689999999976533 457777889999999999999999886421
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHc------CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEK------EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 615 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~------~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 615 (726)
...+|+.++++++.++ ..+|++||+++|+|+||.+++.++.++|+ ++++|+.+|+...
T Consensus 140 ----------~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~~----- 203 (306)
T 3vis_A 140 ----------SRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHLN----- 203 (306)
T ss_dssp ----------HHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCSC-----
T ss_pred ----------hHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccCc-----
Confidence 2448899999999987 67889999999999999999999999998 8899987774330
Q ss_pred CCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChH-HHHHHHHHHHhcCCCCCCCcEE
Q 004866 616 YPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVW-EAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 616 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~-~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
..+.+ ++.|+|+++|..|..||+. ++.+++++++..+ + ..+.
T Consensus 204 --------------------------------~~~~~-~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~---~~~~ 246 (306)
T 3vis_A 204 --------------------------------KSWRD-ITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-D---KAYL 246 (306)
T ss_dssp --------------------------------CCCTT-CCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-C---EEEE
T ss_pred --------------------------------ccccc-CCCCEEEEecCCCcccCcchhHHHHHHHhccCC-C---ceEE
Confidence 11233 6789999999999999998 6999999988754 1 1222
Q ss_pred EEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 695 LNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 695 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++++||+.... ...+....+.+||.++|.
T Consensus 247 ~~~g~gH~~~~~-~~~~~~~~i~~fl~~~l~ 276 (306)
T 3vis_A 247 ELDGASHFAPNI-TNKTIGMYSVAWLKRFVD 276 (306)
T ss_dssp EETTCCTTGGGS-CCHHHHHHHHHHHHHHHS
T ss_pred EECCCCccchhh-chhHHHHHHHHHHHHHcc
Confidence 389999975431 123344567899998874
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=163.08 Aligned_cols=220 Identities=12% Similarity=-0.024 Sum_probs=152.1
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc--
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR-- 547 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~-- 547 (726)
+...+|. ++.++.|.+ +.|+||++||..+.. ..|......|+++||.|+.+|+||+|.....+......
T Consensus 7 ~~~~~g~--~~~~~~~~~-----~~~~vv~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~ 77 (238)
T 1ufo_A 7 RLTLAGL--SVLARIPEA-----PKALLLALHGLQGSK--EHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRY 77 (238)
T ss_dssp EEEETTE--EEEEEEESS-----CCEEEEEECCTTCCH--HHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTH
T ss_pred ccccCCE--EEEEEecCC-----CccEEEEECCCcccc--hHHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcccccch
Confidence 3344664 444566653 569999999976533 34556667788899999999999998764332211100
Q ss_pred -----cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCC
Q 004866 548 -----TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI 622 (726)
Q Consensus 548 -----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 622 (726)
.......+|+.++++++.+++. ++++++|+|+||.+++.++.++|++++++++.+|...... ...
T Consensus 78 ~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~---~~~---- 147 (238)
T 1ufo_A 78 VEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL---PQG---- 147 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCC---CTT----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchh---hhh----
Confidence 0011346788888888876654 7999999999999999999999999988887766432110 000
Q ss_pred hhhhcccCCCCChhHHHHHHhcCcccccccCC-CCCeEEEEecCCCCcChHHHHHHHHHHH-hcCC-CCCCCcEEEEcCC
Q 004866 623 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDV-LYPAVLVTSSFNTRFGVWEAAKWVARVR-ESTI-YDPKRPILLNLTT 699 (726)
Q Consensus 623 ~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~-~~P~lli~g~~D~~V~~~~~~~~~~~L~-~~~~-~~~~~~~~~~~~~ 699 (726)
.+..| +....+..+++...+.+ + +.|+++++|..|..||+..+.+++++++ ..+. + ..+.+++++
T Consensus 148 -----~~~~~---~~~~~~~~~~~~~~~~~-~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 215 (238)
T 1ufo_A 148 -----QVVED---PGVLALYQAPPATRGEA-YGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGR---LARFVEEGA 215 (238)
T ss_dssp -----CCCCC---HHHHHHHHSCGGGCGGG-GTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCC---EEEEEETTC
T ss_pred -----hccCC---cccchhhcCChhhhhhh-ccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCc---eEEEEeCCC
Confidence 01122 23556677788877776 6 8999999999999999999999999999 7653 2 122237899
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 700 DIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
||.... +......+||.++|.
T Consensus 216 ~H~~~~-----~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 216 GHTLTP-----LMARVGLAFLEHWLE 236 (238)
T ss_dssp CSSCCH-----HHHHHHHHHHHHHHH
T ss_pred CcccHH-----HHHHHHHHHHHHHHh
Confidence 997532 334456788888764
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=190.88 Aligned_cols=243 Identities=13% Similarity=0.100 Sum_probs=165.1
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCC--ccchHHH-HHHHHCCcEEEEEccCCCCCCCCc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD--KRWRSEL-KSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~--~~~~~~~-~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
..+.+.+++.||.+|.+.++.|++ .++.|+||+.||. +.... ..|.... +.|+++||+|+.+|+||+|+++..
T Consensus 8 ~~~~v~i~~~DG~~L~~~~~~P~~---~~~~P~vv~~~~~-g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~ 83 (587)
T 3i2k_A 8 VASNVMVPMRDGVRLAVDLYRPDA---DGPVPVLLVRNPY-DKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGE 83 (587)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECC---SSCEEEEEEEESS-CTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSC
T ss_pred EEEEEEEECCCCCEEEEEEEECCC---CCCeeEEEEECCc-CCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCc
Confidence 456789999999999999999975 2578999988753 22211 1122233 889999999999999999998776
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc-ccccccccCCCC
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF-LDATNTLLYPIL 619 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~-~d~~~~~~~~~~ 619 (726)
+.. .....+|+.++++||.++.+.+ .||+++|+||||+++++++.++|+.++|+|+.++. .|+........-
T Consensus 84 ~~~------~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG 156 (587)
T 3i2k_A 84 FVP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGG 156 (587)
T ss_dssp CCT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTC
T ss_pred ccc------ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCC
Confidence 543 2357999999999999988776 89999999999999999999889999999999998 876642211110
Q ss_pred CCCh----hhhc--------------------------------cc--CCCC-------------------ChhHHHHHH
Q 004866 620 PLIA----ADYE--------------------------------EF--GYPG-------------------DIDDFHAIR 642 (726)
Q Consensus 620 ~~~~----~~~~--------------------------------~~--g~~~-------------------~~~~~~~~~ 642 (726)
.+.. .|.. .| ..|. .+..-++++
T Consensus 157 ~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yw~ 236 (587)
T 3i2k_A 157 ALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQ 236 (587)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSCCHHHH
T ss_pred ccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCCChHHh
Confidence 0000 0100 00 0000 000113355
Q ss_pred hcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc---------hhhH---H
Q 004866 643 NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN---------RYLQ---C 710 (726)
Q Consensus 643 ~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~---------~~~~---~ 710 (726)
+.|+...+.+ |+.|+|+++|-.|..+ ..+.+++++|+..++ .-+++-| ..|+... .... .
T Consensus 237 ~~s~~~~l~~-I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~----~~L~iGP-w~H~~~~~~~g~~~~g~~~~~~~~ 308 (587)
T 3i2k_A 237 SISLFERLGG-LATPALITAGWYDGFV--GESLRTFVAVKDNAD----ARLVVGP-WSHSNLTGRNADRKFGIAATYPIQ 308 (587)
T ss_dssp TTCCHHHHTT-CCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC----EEEEEEE-EETTBCSSEETTEECCGGGSCCHH
T ss_pred cCChhhhhcc-CCCCEEEEccCCCccc--hHHHHHHHHHhhcCC----CEEEECC-ccccCccccCCCcccCCccccccc
Confidence 6677777776 8999999999999654 468899999987662 1232222 2354210 1111 1
Q ss_pred HHHHHHHHHHHHhhc
Q 004866 711 KESALETAFLIKMME 725 (726)
Q Consensus 711 ~~~~~~~~fl~~~l~ 725 (726)
+....+++||.++|.
T Consensus 309 ~~~~~~~~wFD~~Lk 323 (587)
T 3i2k_A 309 EATTMHKAFFDRHLR 323 (587)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHhc
Confidence 223667899999883
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=171.04 Aligned_cols=243 Identities=14% Similarity=0.032 Sum_probs=155.4
Q ss_pred ceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH---HHHHHHCCcEEEEEccCCCCCCC
Q 004866 463 YSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE---LKSLLDRGWVVAFADVRGGGGGG 538 (726)
Q Consensus 463 ~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---~~~l~~~G~~v~~~d~RG~g~~g 538 (726)
.+.+.+++.|. .|.+|+++ + |+.. +++|+|+++||+.+......|... .+.+.+.|++|+++|.++++.|.
T Consensus 7 ~~v~~~~~~S~~~~~~i~v~-~-~p~~---~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~ 81 (304)
T 1sfr_A 7 LPVEYLQVPSPSMGRDIKVQ-F-QSGG---ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYS 81 (304)
T ss_dssp CCCEEEEEEETTTTEEEEEE-E-ECCS---TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTC
T ss_pred ceEEEEEEECccCCCceEEE-E-CCCC---CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCcccc
Confidence 34566777765 46777766 3 4432 568999999998532233345443 35566789999999998765442
Q ss_pred Cccccccc--ccCCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 539 KKWHHDGR--RTKKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 539 ~~~~~~~~--~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
.|..... +......+.+++ +.+.++.++--+++++++|+|+||||++++.++.++|++|+++|+.+|.+++....
T Consensus 82 -~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 160 (304)
T 1sfr_A 82 -DWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAM 160 (304)
T ss_dssp -BCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTT
T ss_pred -ccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccc
Confidence 2221110 000123455553 33444443223677899999999999999999999999999999999988754210
Q ss_pred cCC--------CCCCChhhhcccCCCCChhHHHHHHhcCcccccccC--CCCCeEEEEecCCC--------------CcC
Q 004866 615 LYP--------ILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD--VLYPAVLVTSSFNT--------------RFG 670 (726)
Q Consensus 615 ~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~--~~~P~lli~g~~D~--------------~V~ 670 (726)
... .... .....||.+.. ..+.+.+|...+.+. ...|++|++|..|+ +|+
T Consensus 161 ~~~~~~~~~~~~~~~--~~~~~~g~~~~----~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~ 234 (304)
T 1sfr_A 161 GPTLIGLAMGDAGGY--KASDMWGPKED----PAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFV 234 (304)
T ss_dssp HHHHHHHHHHHTTSC--CHHHHHCSTTS----THHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHH
T ss_pred hhhhhhHhhhhcccc--chHHhcCCcch----hhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHH
Confidence 000 0000 01113455432 236677888766541 25678888888887 788
Q ss_pred hHHHHHHHHHHHhcC-CCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 671 VWEAAKWVARVREST-IYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 671 ~~~~~~~~~~L~~~~-~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
..++.+++++|+++| ++ +.+ +++++|.... ......+.+.||.+.|+
T Consensus 235 ~~~~~~~~~~L~~~G~~~-----v~~~~~~~g~H~~~~---w~~~l~~~l~~l~~~l~ 284 (304)
T 1sfr_A 235 RTSNIKFQDAYNAGGGHN-----GVFDFPDSGTHSWEY---WGAQLNAMKPDLQRALG 284 (304)
T ss_dssp HHHHHHHHHHHHHTTCCS-----EEEECCSCCCSSHHH---HHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCc-----eEEEecCCCccCHHH---HHHHHHHHHHHHHHhcC
Confidence 999999999999988 64 333 5678996422 12234567899998875
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=166.50 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=150.5
Q ss_pred CceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCC
Q 004866 462 FYSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGG 537 (726)
Q Consensus 462 ~~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~ 537 (726)
....+.+++.|. +|.+++++ +.|++ .|+||++||+........|.. ..+.++++|++|+++|.++++.|
T Consensus 8 ~~~~~~~~~~S~~~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~ 80 (280)
T 1r88_A 8 AAPYENLMVPSPSMGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMY 80 (280)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTT
T ss_pred CCCEEEEEEECcccCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCcc
Confidence 345667778775 78899988 67764 289999999853222334443 34567778999999999876544
Q ss_pred CCcccccccccCCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 615 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 615 (726)
. .|..... ..+.+++ +.+.++.++--+++++++|+|+||||++++.++.++|++|+++++.+|.+++.....
T Consensus 81 ~-~~~~~~~-----~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 154 (280)
T 1r88_A 81 T-NWEQDGS-----KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTT 154 (280)
T ss_dssp S-BCSSCTT-----CBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHH
T ss_pred C-CCCCCCC-----CcHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccc
Confidence 1 2222111 1343332 233444442346788999999999999999999999999999999999987542110
Q ss_pred CCCCCC------ChhhhcccCCCCChhHHHHHHhcCcccccccC--CCCCeEEEE----ecCCCC-------cChHHHHH
Q 004866 616 YPILPL------IAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD--VLYPAVLVT----SSFNTR-------FGVWEAAK 676 (726)
Q Consensus 616 ~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~--~~~P~lli~----g~~D~~-------V~~~~~~~ 676 (726)
...... .......||.+.. ..+.+.+|+.++.+. ...|+++++ |..|.+ |++.++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~ 230 (280)
T 1r88_A 155 NGAIAAGMQQFGGVDTNGMWGAPQL----GRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRM 230 (280)
T ss_dssp HHHHHHHHHHHHCCCTHHHHCCGGG----STTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHH
T ss_pred hhhHHHHhhhccccchhhhcCCCch----hhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHH
Confidence 000000 0001112444421 224567887766541 246777778 677764 69999999
Q ss_pred HHHHHHhcC-CCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 677 WVARVREST-IYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 677 ~~~~L~~~~-~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
++++|+++| ++ +.+ +++++|..... -......+.|+.+.|
T Consensus 231 ~~~~L~~~g~~~-----~~~~~~~~g~H~~~~w---~~~l~~~l~~~~~~~ 273 (280)
T 1r88_A 231 FYNQYRSVGGHN-----GHFDFPASGDNGWGSW---APQLGAMSGDIVGAI 273 (280)
T ss_dssp HHHHHHHTTCCS-----EEEECCSSCCSSHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcc-----eEEEecCCCCcChhHH---HHHHHHHHHHHHHHH
Confidence 999999987 53 334 57889964321 123345567777655
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=166.46 Aligned_cols=227 Identities=11% Similarity=0.051 Sum_probs=144.7
Q ss_pred EEEEEE---CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 466 EQYDVP---SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW-RSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 466 ~~~~~~---s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
..+++. +.+|.++.++++.|++.. .+.|+||++||+.+.. ..| ......+.++||.|+.+|+|+.+..+..|
T Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~P~~~~--~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~~ 100 (304)
T 3d0k_A 25 NAIPYLDDDRNADRPFTLNTYRPYGYT--PDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWPGVES 100 (304)
T ss_dssp EEEEECC---CTTCCEEEEEEECTTCC--TTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSCHHHH
T ss_pred ceEEecccCCCCCceEEEEEEeCCCCC--CCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCCCccc
Confidence 345666 678899999999997642 4579999999986643 334 44567788899999999999652111111
Q ss_pred cccc--------cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC-ceeEEEEeC-Cccccc
Q 004866 542 HHDG--------RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEV-PFLDAT 611 (726)
Q Consensus 542 ~~~~--------~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~-p~~d~~ 611 (726)
+..+ ........++|+.++++++.++..+|++||+|+|+|+||++++.++.++|+ .++++|+.. |++++.
T Consensus 101 ~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~~ 180 (304)
T 3d0k_A 101 YNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLP 180 (304)
T ss_dssp TTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCCS
T ss_pred cccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcccccC
Confidence 1111 111123456889999999998877899999999999999999999999995 788888555 665543
Q ss_pred ccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcC-----------------hHHH
Q 004866 612 NTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFG-----------------VWEA 674 (726)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~-----------------~~~~ 674 (726)
... .. + .+|.... ..+|...... ...|++++||..|..+. ...+
T Consensus 181 ~~~----~~----~--~~~~~~~--------~~~~~~~~~~-~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (304)
T 3d0k_A 181 TFE----HR----F--PEGLDGV--------GLTEDHLARL-LAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARA 241 (304)
T ss_dssp STT----SB----T--TTSSBTT--------TCCHHHHHHH-HHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHH
T ss_pred Ccc----cc----C--ccccCCC--------CCCHHHHHhh-hcCCEEEEEeCCCCCccccccccChhhhccCccHHHHH
Confidence 210 00 0 1121110 0122222222 45799999999997642 4567
Q ss_pred HHHHHHHH----hcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 675 AKWVARVR----ESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 675 ~~~~~~L~----~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.++++.++ +++++.. ..+..++++||.+. .......+||.+
T Consensus 242 ~~~~~~l~~~a~~~g~~~~-~~~~~~pg~gH~~~------~~~~~~~~~~~~ 286 (304)
T 3d0k_A 242 RHYYEAGQRAAAQRGLPFG-WQLQVVPGIGHDGQ------AMSQVCASLWFD 286 (304)
T ss_dssp HHHHHHHHHHHHHHTCCCC-CEEEEETTCCSCHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcc-eEEEEeCCCCCchH------HHHHHHHHHHhh
Confidence 77888886 5564210 11222899999742 223345566654
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=170.17 Aligned_cols=209 Identities=13% Similarity=0.013 Sum_probs=140.9
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEEccC---CCCCCCCcccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR--GWVVAFADVR---GGGGGGKKWHH 543 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~R---G~g~~g~~~~~ 543 (726)
...+..+.+...+...|+ .++++.|+||++||. |. ....|......|..+ ++.+++|+-+ ...+.|..|+.
T Consensus 43 ~~~~~~~~~~l~y~~~p~--~~~~~~plVI~LHG~-G~-~~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd 118 (285)
T 4fhz_A 43 KAMADIMTRKLTFGRRGA--APGEATSLVVFLHGY-GA-DGADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFP 118 (285)
T ss_dssp -----CCCCCCCEEEEES--CTTCCSEEEEEECCT-TB-CHHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSC
T ss_pred ccccccccccceeecCCC--CCCCCCcEEEEEcCC-CC-CHHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccc
Confidence 344445554444455555 356788999999984 32 223455556667654 8999999854 22345677864
Q ss_pred cccccC--C-------CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 544 DGRRTK--K-------LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 544 ~~~~~~--~-------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
...... . .....++.+.++.++++.-+|++||+|+|+|+||++++.++.++|++|+++|+.++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~~--- 195 (285)
T 4fhz_A 119 IPWLDGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLAP--- 195 (285)
T ss_dssp CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSCH---
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccCc---
Confidence 211110 0 1123456666777777667899999999999999999999999999999999877642110
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
+... . .. ..+.|++++||..|+.||+.++.+++++|+++|++ ..+
T Consensus 196 ---------------------~~~~---~------~~-~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~----~~~ 240 (285)
T 4fhz_A 196 ---------------------ERLA---E------EA-RSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFT----TYG 240 (285)
T ss_dssp ---------------------HHHH---H------HC-CCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCC----EEE
T ss_pred ---------------------hhhh---h------hh-hhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCC----EEE
Confidence 0100 0 01 24679999999999999999999999999999853 222
Q ss_pred E-EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 695 L-NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 695 ~-~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
. |++.||+... ++..+..+||.++|
T Consensus 241 ~~y~g~gH~i~~-----~~l~~~~~fL~~~L 266 (285)
T 4fhz_A 241 HVMKGTGHGIAP-----DGLSVALAFLKERL 266 (285)
T ss_dssp EEETTCCSSCCH-----HHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCH-----HHHHHHHHHHHHHC
Confidence 2 8999997532 44566789999987
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=157.76 Aligned_cols=190 Identities=12% Similarity=0.052 Sum_probs=132.7
Q ss_pred EEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc-c-----cccC----CC
Q 004866 482 IIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD-G-----RRTK----KL 551 (726)
Q Consensus 482 l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~-~-----~~~~----~~ 551 (726)
+++|+. +++.| ||++||..+.. ..|......|+ .|+.|+.+|.++.+..+..|+.. + .... ..
T Consensus 8 ~~~~~~---~~~~p-vv~lHG~g~~~--~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~ 80 (209)
T 3og9_A 8 VFKAGR---KDLAP-LLLLHSTGGDE--HQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLD 80 (209)
T ss_dssp EEECCC---TTSCC-EEEECCTTCCT--TTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHH
T ss_pred EEeCCC---CCCCC-EEEEeCCCCCH--HHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHH
Confidence 455542 34578 99999965432 45677777776 79999999977544445556541 0 0101 11
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCC
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGY 631 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~ 631 (726)
...+++.+.++.+.++..+|++|++|+|+|+||++++.++.++|++++++|+.+|......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------- 141 (209)
T 3og9_A 81 EETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF------------------- 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc-------------------
Confidence 2345555666666666567899999999999999999999999999999999988654210
Q ss_pred CCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-EcCCCCCCCchhhHH
Q 004866 632 PGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEENRYLQC 710 (726)
Q Consensus 632 ~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~~~~~~ 710 (726)
. .... ....|++++||..|..||++++.+++++|+++++ ++.+ ..++||++..
T Consensus 142 -~--------------~~~~-~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~-----~~~~~~~~~gH~~~~----- 195 (209)
T 3og9_A 142 -E--------------QTVQ-LDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGC-----QLEIYESSLGHQLTQ----- 195 (209)
T ss_dssp -C--------------CCCC-CTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTC-----EEEEEECSSTTSCCH-----
T ss_pred -c--------------cccc-ccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCC-----ceEEEEcCCCCcCCH-----
Confidence 0 0011 2567999999999999999999999999999874 3444 3348997632
Q ss_pred HHHHHHHHHHHHh
Q 004866 711 KESALETAFLIKM 723 (726)
Q Consensus 711 ~~~~~~~~fl~~~ 723 (726)
+......+||.++
T Consensus 196 ~~~~~~~~~l~~~ 208 (209)
T 3og9_A 196 EEVLAAKKWLTET 208 (209)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3455567888764
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-17 Score=170.08 Aligned_cols=220 Identities=11% Similarity=-0.029 Sum_probs=144.5
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHH
Q 004866 478 VPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIK 555 (726)
Q Consensus 478 i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 555 (726)
++++++.|.+ ++.|+||++|||... .....|......|+. .||.|+.+|+||+++.. ....++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~-----------~~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFH-----------IDDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSC-----------HHHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCC-----------chHHHH
Confidence 5666777764 346999999997532 233456666677774 59999999999976531 123689
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc----eeEEEEeCCcccccccccCCCCCCChhhhcccCC
Q 004866 556 DFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL----FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGY 631 (726)
Q Consensus 556 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~ 631 (726)
|+.+++++|+++ .++++|+|+|+||||.+++.++.++|+. ++++|+.+|++++.... .. ... .......
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~--~~--~~~-~~~~~~~ 221 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSN--KD--ISD-ALIEQDA 221 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCC--TT--CCH-HHHHHCS
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCC--hh--HHh-hhcccCc
Confidence 999999999987 7889999999999999999999887776 99999999988764211 00 000 0000000
Q ss_pred CCChhHH----HHHH--------hcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCC
Q 004866 632 PGDIDDF----HAIR--------NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699 (726)
Q Consensus 632 ~~~~~~~----~~~~--------~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 699 (726)
....... ..+. ..+|+...-. ...|+|+++|+.|. +..++.+++++|++++++ ..+.+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~lii~G~~D~--~~~~~~~~~~~l~~~~~~---~~~~~~~g~ 295 (326)
T 3d7r_A 222 VLSQFGVNEIMKKWANGLPLTDKRISPINGTIE-GLPPVYMFGGGREM--THPDMKLFEQMMLQHHQY---IEFYDYPKM 295 (326)
T ss_dssp SCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCT-TCCCEEEEEETTST--THHHHHHHHHHHHHTTCC---EEEEEETTC
T ss_pred ccCHHHHHHHHHHhcCCCCCCCCeECcccCCcc-cCCCEEEEEeCccc--chHHHHHHHHHHHHCCCc---EEEEEeCCC
Confidence 0000111 1111 1244432222 23588999999995 456788999999998743 122228999
Q ss_pred CCCCCc--hhhHHHHHHHHHHHHHHhhc
Q 004866 700 DIVEEN--RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 700 gH~~~~--~~~~~~~~~~~~~fl~~~l~ 725 (726)
||++.. .....+....+.+||.+++.
T Consensus 296 ~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 296 VHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp CTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 997543 23444556677899987764
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-16 Score=161.32 Aligned_cols=133 Identities=21% Similarity=0.263 Sum_probs=103.4
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
.+..+.+.+.+ +|..+.+.++.+.. .+++.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+...
T Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~- 90 (315)
T 4f0j_A 17 AYPVHYLDFTS-QGQPLSMAYLDVAP--KKANGRTILLMHGKNFCA--GTWERTIDVLADAGYRVIAVDQVGFCKSSKP- 90 (315)
T ss_dssp SSCCEEEEEEE-TTEEEEEEEEEECC--SSCCSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-
T ss_pred CccceeEEEec-CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCcc--hHHHHHHHHHHHCCCeEEEeecCCCCCCCCC-
Confidence 34566677765 66677766555543 235569999999976643 4688888999999999999999999976332
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.....+++|+.+.+..++++ .+.+++.++|+|+||++++.++.++|++++++|+.+|+.
T Consensus 91 ------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 149 (315)
T 4f0j_A 91 ------AHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149 (315)
T ss_dssp ------SSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred ------CccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcc
Confidence 11245788888888888865 345699999999999999999999999999999999864
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.9e-18 Score=180.81 Aligned_cols=149 Identities=11% Similarity=0.117 Sum_probs=114.4
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC------------Cccch----HHHHHHHHCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL------------DKRWR----SELKSLLDRG 523 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~------------~~~~~----~~~~~l~~~G 523 (726)
...+..+.+.+++.||.+|+++++.|++. .++.|+||++||+.+... ...|. ...+.|+++|
T Consensus 87 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~G 164 (398)
T 3nuz_A 87 REGYRLEKWEFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEG 164 (398)
T ss_dssp CSSEEEEEEEECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTT
T ss_pred cCCEEEEEEEEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCC
Confidence 45688999999999999999999999863 467899999999755321 11122 4678999999
Q ss_pred cEEEEEccCCCCCCCCcccccc----------------cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHH
Q 004866 524 WVVAFADVRGGGGGGKKWHHDG----------------RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLV 587 (726)
Q Consensus 524 ~~v~~~d~RG~g~~g~~~~~~~----------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~ 587 (726)
|+|+.+|+||+|+++....... ..........|+.++++||.+++.+|++||+|+|+||||+++
T Consensus 165 y~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a 244 (398)
T 3nuz_A 165 YIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPM 244 (398)
T ss_dssp CEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHH
Confidence 9999999999998764431100 000111234799999999999999999999999999999999
Q ss_pred HHHHHcCCCceeEEEEeCCccccc
Q 004866 588 AAAINCCPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 588 ~~~~~~~p~~f~a~v~~~p~~d~~ 611 (726)
+.++.. +++++|+|+.+++..+.
T Consensus 245 ~~~aa~-~~~i~a~v~~~~~~~~~ 267 (398)
T 3nuz_A 245 MVLGTL-DTSIYAFVYNDFLCQTQ 267 (398)
T ss_dssp HHHHHH-CTTCCEEEEESCBCCHH
T ss_pred HHHHhc-CCcEEEEEEecccccch
Confidence 988886 56788888877766543
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-18 Score=172.95 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=131.6
Q ss_pred CCCccEEEEEcCCCCC---CCCccchHHHHHH----HHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHH
Q 004866 491 ENQNPGLLHGHGAYGE---LLDKRWRSELKSL----LDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARF 563 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~---~~~~~~~~~~~~l----~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 563 (726)
+++.|+||++|||... .....|......| +++||.|+.+|+|++++.. ....++|+.+++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~-----------~~~~~~d~~~~~~~ 106 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITR 106 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCC-----------CCcHHHHHHHHHHH
Confidence 3568999999996532 2334577777777 5789999999999876431 22468999999999
Q ss_pred HHHcCCCCCCcEEEEEecccHHHHHHHHHcC-----------------CCceeEEEEeCCcccccccccCCCCCCChhhh
Q 004866 564 LIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-----------------PDLFRAVVLEVPFLDATNTLLYPILPLIAADY 626 (726)
Q Consensus 564 l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-----------------p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~ 626 (726)
++++ .++++++|+|+|+||++++.++.++ |+.++++|+.+|+.++....... +......
T Consensus 107 l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~--~~~~~~~ 182 (273)
T 1vkh_A 107 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEY--PEYDCFT 182 (273)
T ss_dssp HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHC--GGGHHHH
T ss_pred HHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhc--ccHHHHH
Confidence 9976 5778999999999999999999875 78899999999988765422110 0000000
Q ss_pred -cccCCCCChhHHH-HHHhcCccc--ccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q 004866 627 -EEFGYPGDIDDFH-AIRNYSPYD--NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 702 (726)
Q Consensus 627 -~~~g~~~~~~~~~-~~~~~sp~~--~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 702 (726)
..++... +.+. .....+|+. .... ++.|+|+++|+.|..||+.++.+++++|+..+.+ ..+.+++++||.
T Consensus 183 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~---~~~~~~~~~gH~ 256 (273)
T 1vkh_A 183 RLAFPDGI--QMYEEEPSRVMPYVKKALSR-FSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLS---FKLYLDDLGLHN 256 (273)
T ss_dssp HHHCTTCG--GGCCCCHHHHHHHHHHHHHH-HTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCC---EEEEEECCCSGG
T ss_pred HHHhcccc--cchhhcccccChhhhhcccc-cCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCc---eEEEEeCCCccc
Confidence 0111110 0000 011112211 1111 5679999999999999999999999999998743 122227999997
Q ss_pred CC
Q 004866 703 EE 704 (726)
Q Consensus 703 ~~ 704 (726)
..
T Consensus 257 ~~ 258 (273)
T 1vkh_A 257 DV 258 (273)
T ss_dssp GG
T ss_pred cc
Confidence 53
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-18 Score=181.36 Aligned_cols=148 Identities=12% Similarity=0.092 Sum_probs=113.8
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC------------Cccch----HHHHHHHHCCc
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL------------DKRWR----SELKSLLDRGW 524 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~------------~~~~~----~~~~~l~~~G~ 524 (726)
..+..+.+.+++.+|..|+++++.|++. .++.|+||++||..+... ...|. ...+.|+++||
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~ 160 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGY 160 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTC
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCC
Confidence 4678899999999999999999999864 467899999999644221 01122 56788999999
Q ss_pred EEEEEccCCCCCCCCcccccc-----c-------ccCCC----CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHH
Q 004866 525 VVAFADVRGGGGGGKKWHHDG-----R-------RTKKL----NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVA 588 (726)
Q Consensus 525 ~v~~~d~RG~g~~g~~~~~~~-----~-------~~~~~----~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~ 588 (726)
+|+.+|+||+|+++..-.... . ...+. ....|+.++++||.+++.+|++||+|+|+||||++++
T Consensus 161 ~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al 240 (391)
T 3g8y_A 161 VAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMM 240 (391)
T ss_dssp EEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHH
Confidence 999999999998764311100 0 00011 1237999999999999999999999999999999999
Q ss_pred HHHHcCCCceeEEEEeCCccccc
Q 004866 589 AAINCCPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 589 ~~~~~~p~~f~a~v~~~p~~d~~ 611 (726)
.++.. +++++++|+.+++.++.
T Consensus 241 ~~a~~-~~~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 241 VLGVL-DKDIYAFVYNDFLCQTQ 262 (391)
T ss_dssp HHHHH-CTTCCEEEEESCBCCHH
T ss_pred HHHHc-CCceeEEEEccCCCCcc
Confidence 98886 56789999888887764
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=164.32 Aligned_cols=216 Identities=15% Similarity=0.115 Sum_probs=140.3
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
+.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+...... .......+|+.++++++.++ .
T Consensus 39 ~~~~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~----~~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGTP--HSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMER----TTFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCCG--GGTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHT----CCHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCCh--hHHHHHHHHHHHCCCEEEEeCCCCCCCCcccccc----CCHHHHHHHHHHHHHHHHhh----C
Confidence 358999999976543 4578888999999999999999999876432111 11112356777888888765 5
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC-CCCCCChhhhcccCCC------------C-ChhHH
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY-PILPLIAADYEEFGYP------------G-DIDDF 638 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-~~~~~~~~~~~~~g~~------------~-~~~~~ 638 (726)
++++++|+|+||++++.++.++|+ ++++|+.+|..++...... ........+...++.. . .....
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASL 187 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHHHH
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChhHH
Confidence 899999999999999999999999 9999999998765432110 0000000000001000 0 00011
Q ss_pred HHHH-hc-CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHH
Q 004866 639 HAIR-NY-SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALE 716 (726)
Q Consensus 639 ~~~~-~~-sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 716 (726)
..+. .. .....+.+ ++.|+|+++|..|..||+.++.++++++.... ..+.+++++||.........+....+
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~i 261 (270)
T 3rm3_A 188 LQLARLMAQTKAKLDR-IVCPALIFVSDEDHVVPPGNADIIFQGISSTE-----KEIVRLRNSYHVATLDYDQPMIIERS 261 (270)
T ss_dssp HHHHHHHHHHHHTGGG-CCSCEEEEEETTCSSSCTTHHHHHHHHSCCSS-----EEEEEESSCCSCGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh-cCCCEEEEECCCCcccCHHHHHHHHHhcCCCc-----ceEEEeCCCCcccccCccHHHHHHHH
Confidence 1111 00 11133454 78999999999999999999999998887532 12333799999764422234445567
Q ss_pred HHHHHHhhc
Q 004866 717 TAFLIKMME 725 (726)
Q Consensus 717 ~~fl~~~l~ 725 (726)
.+||.++.+
T Consensus 262 ~~fl~~~~~ 270 (270)
T 3rm3_A 262 LEFFAKHAG 270 (270)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHhcCC
Confidence 899988754
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-17 Score=162.18 Aligned_cols=182 Identities=14% Similarity=0.103 Sum_probs=131.8
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEE--ccCCCCCCCCcccccc-cccCC----CCcHHHHHHHHHHH
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA--DVRGGGGGGKKWHHDG-RRTKK----LNSIKDFISCARFL 564 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~--d~RG~g~~g~~~~~~~-~~~~~----~~~~~D~~~~~~~l 564 (726)
++.|+||++||+.+.. ..|......|++ +|.|+.+ |+||+|+++ |.... ..... ....+|+.+.++++
T Consensus 60 ~~~p~vv~~HG~~~~~--~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDE--NQFFDFGARLLP-QATILSPVGDVSEHGAAR--FFRRTGEGVYDMVDLERATGKMADFIKAN 134 (251)
T ss_dssp TTSCEEEEECCTTCCH--HHHHHHHHHHST-TSEEEEECCSEEETTEEE--SSCBCGGGCBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCH--hHHHHHHHhcCC-CceEEEecCCcCCCCCcc--cccCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999976532 456666666665 5999999 788887542 32111 11111 12367777778777
Q ss_pred HHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhc
Q 004866 565 IEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNY 644 (726)
Q Consensus 565 ~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 644 (726)
.++. +.+|++|+|+|+||++++.++.++|++++++|+.+|+.+...
T Consensus 135 ~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-------------------------------- 180 (251)
T 2r8b_A 135 REHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 180 (251)
T ss_dssp HHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred Hhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc--------------------------------
Confidence 7653 779999999999999999999999999999999999765321
Q ss_pred CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE-EEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 645 SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL-LNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 645 sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~-~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
.+ ....++.|+|+++|+.|..||+.++.+++++|+++++ .+. ..+++||+.. .+......+||.++
T Consensus 181 ~~---~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~gH~~~-----~~~~~~~~~~l~~~ 247 (251)
T 2r8b_A 181 KI---SPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGG-----TVETVWHPGGHEIR-----SGEIDAVRGFLAAY 247 (251)
T ss_dssp CC---CCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSS-----EEEEEEESSCSSCC-----HHHHHHHHHHHGGG
T ss_pred cc---cccccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCC-----eEEEEecCCCCccC-----HHHHHHHHHHHHHh
Confidence 00 1112578999999999999999999999999998763 333 3678899763 23345678999988
Q ss_pred hc
Q 004866 724 ME 725 (726)
Q Consensus 724 l~ 725 (726)
|+
T Consensus 248 l~ 249 (251)
T 2r8b_A 248 GG 249 (251)
T ss_dssp C-
T ss_pred cC
Confidence 85
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=150.85 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=138.8
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH--HHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS--ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
.||.+|+++++.|++ +.|+||++||+.+.. ..|.. ....|+++||.|+.+|+||.|.... . .. ...
T Consensus 11 ~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~---~-~~-~~~ 78 (207)
T 3bdi_A 11 VNGTRVFQRKMVTDS-----NRRSIALFHGYSFTS--MDWDKADLFNNYSKIGYNVYAPDYPGFGRSAS---S-EK-YGI 78 (207)
T ss_dssp ETTEEEEEEEECCTT-----CCEEEEEECCTTCCG--GGGGGGTHHHHHHTTTEEEEEECCTTSTTSCC---C-TT-TCC
T ss_pred eCCcEEEEEEEeccC-----CCCeEEEECCCCCCc--cccchHHHHHHHHhCCCeEEEEcCCcccccCc---c-cC-CCC
Confidence 489999998887764 468999999976643 45777 8889999999999999999876411 0 00 111
Q ss_pred CC-cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhccc
Q 004866 551 LN-SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEF 629 (726)
Q Consensus 551 ~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~ 629 (726)
.. .++|+.+.+..++++ .+.++++++|+|+||.+++.++.++|++++++|+.+|... .. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~-~~-------------~--- 139 (207)
T 3bdi_A 79 DRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWV-ES-------------L--- 139 (207)
T ss_dssp TTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSC-GG-------------G---
T ss_pred CcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccc-cc-------------h---
Confidence 22 788888888888865 3557999999999999999999999999999999888621 10 0
Q ss_pred CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhH
Q 004866 630 GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQ 709 (726)
Q Consensus 630 g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 709 (726)
...+.+ ++.|+++++|..|..|++..+.++.+.+... .+..++++||.... ...
T Consensus 140 -----------------~~~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~H~~~~-~~~ 193 (207)
T 3bdi_A 140 -----------------KGDMKK-IRQKTLLVWGSKDHVVPIALSKEYASIISGS-------RLEIVEGSGHPVYI-EKP 193 (207)
T ss_dssp -----------------HHHHTT-CCSCEEEEEETTCTTTTHHHHHHHHHHSTTC-------EEEEETTCCSCHHH-HSH
T ss_pred -----------------hHHHhh-ccCCEEEEEECCCCccchHHHHHHHHhcCCc-------eEEEeCCCCCCccc-cCH
Confidence 011232 6789999999999999999999888887321 22337899996422 112
Q ss_pred HHHHHHHHHHHH
Q 004866 710 CKESALETAFLI 721 (726)
Q Consensus 710 ~~~~~~~~~fl~ 721 (726)
.+....+.+||.
T Consensus 194 ~~~~~~i~~fl~ 205 (207)
T 3bdi_A 194 EEFVRITVDFLR 205 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 223334566765
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=172.77 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=106.6
Q ss_pred CCCceEEEEEEECCC--C--cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCC---------ccchHHHHHHHHCCcEE
Q 004866 460 SEFYSCEQYDVPSHD--G--ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD---------KRWRSELKSLLDRGWVV 526 (726)
Q Consensus 460 ~~~~~~~~~~~~s~d--G--~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~---------~~~~~~~~~l~~~G~~v 526 (726)
...+...++.|.+.+ | ..+.++++.|++....++.|+||++||+.+.... ..|...+..|+++||+|
T Consensus 41 ~~~v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V 120 (397)
T 3h2g_A 41 KCNVRVAEFTYATIGVEGEPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVV 120 (397)
T ss_dssp CSEEEEEEEEEEEECTTSCEEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEE
T ss_pred cCCeEEEEEEEEecCCCCCeEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEE
Confidence 345677788887654 5 3588999999876556789999999997765321 12556778899999999
Q ss_pred EEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc-CCCCCCcEEEEEecccHHHHHHHHHc-CC----C-cee
Q 004866 527 AFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIVKEHKLAGWGYSAGGLLVAAAINC-CP----D-LFR 599 (726)
Q Consensus 527 ~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~-~p----~-~f~ 599 (726)
+++|+||+|.++...............+.|.+.++..+.++ +..+++||+++|||+||+++++++.. .+ + .+.
T Consensus 121 ~~~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~ 200 (397)
T 3h2g_A 121 VGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLV 200 (397)
T ss_dssp EEECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEE
T ss_pred EEecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceE
Confidence 99999999986432211110000113456666666666554 66668899999999999999887622 22 2 578
Q ss_pred EEEEeCCccccc
Q 004866 600 AVVLEVPFLDAT 611 (726)
Q Consensus 600 a~v~~~p~~d~~ 611 (726)
++++.++..|+.
T Consensus 201 ~~~~~~~~~~l~ 212 (397)
T 3h2g_A 201 ASAPISGPYALE 212 (397)
T ss_dssp EEEEESCCSSHH
T ss_pred EEecccccccHH
Confidence 888888888775
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=163.94 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=140.8
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCc-ccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKK-WHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
++.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+... ..... ......+|+.++++++..+
T Consensus 20 ~~~~~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~---~~~~~~~d~~~~i~~l~~~--- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGSP--NDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKG---NPDIWWAESSAAVAHMTAK--- 91 (251)
T ss_dssp CSSEEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHHC---CHHHHHHHHHHHHHHHHTT---
T ss_pred CCCceEEEeCCCCCCH--HHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCcc---cHHHHHHHHHHHHHHHHHh---
Confidence 3468899999976543 4678888999999999999999999976221 11110 1112357788888888765
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhH--------HHHHH
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDD--------FHAIR 642 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~ 642 (726)
.++++++|+|+||++++.++.++|++++++++.+|+.............+........+....... ...+.
T Consensus 92 -~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T 3dkr_A 92 -YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAID 170 (251)
T ss_dssp -CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHHhhhHHHHHHHH
Confidence 579999999999999999999999999999999988764321100000000000000111101000 11111
Q ss_pred hc--CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHh-cCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHH
Q 004866 643 NY--SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRE-STIYDPKRPILLNLTTDIVEENRYLQCKESALETAF 719 (726)
Q Consensus 643 ~~--sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 719 (726)
.. .+...+.+ ++.|+|+++|..|..||+..+.++++++.. .. ..+.+++++||......+..+....+.+|
T Consensus 171 ~~~~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~i~~f 244 (251)
T 3dkr_A 171 QFATTVAADLNL-VKQPTFIGQAGQDELVDGRLAYQLRDALINAAR-----VDFHWYDDAKHVITVNSAHHALEEDVIAF 244 (251)
T ss_dssp HHHHHHHHTGGG-CCSCEEEEEETTCSSBCTTHHHHHHHHCTTCSC-----EEEEEETTCCSCTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhccccc-cCCCEEEEecCCCcccChHHHHHHHHHhcCCCC-----ceEEEeCCCCcccccccchhHHHHHHHHH
Confidence 11 12334554 789999999999999999999999999887 32 12223799999764422244445566788
Q ss_pred HHHh
Q 004866 720 LIKM 723 (726)
Q Consensus 720 l~~~ 723 (726)
|.+.
T Consensus 245 l~~~ 248 (251)
T 3dkr_A 245 MQQE 248 (251)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8764
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=155.98 Aligned_cols=202 Identities=9% Similarity=0.019 Sum_probs=134.0
Q ss_pred EEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCC------Ccccc-ccc---ccCCC
Q 004866 482 IIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG------KKWHH-DGR---RTKKL 551 (726)
Q Consensus 482 l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g------~~~~~-~~~---~~~~~ 551 (726)
++.|+. +++.|+||++||..+.. ..|......|+++||.|+.+|.+|.+... ..|++ .+. .....
T Consensus 14 ~~~p~~---~~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~~ 88 (232)
T 1fj2_A 14 AIVPAA---RKATAAVIFLHGLGDTG--HGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDE 88 (232)
T ss_dssp EEECCS---SCCSEEEEEECCSSSCH--HHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCH
T ss_pred cccCCC---CCCCceEEEEecCCCcc--chHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCccccccc
Confidence 456654 24679999999976532 34666667777789999999555422100 00100 000 00111
Q ss_pred C----cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhc
Q 004866 552 N----SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYE 627 (726)
Q Consensus 552 ~----~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~ 627 (726)
. ..+|+.+.++++.+ ..+|+++++++|+|+||.+++.++.++|++++++|+.+|..+.....
T Consensus 89 ~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~------------- 154 (232)
T 1fj2_A 89 SGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF------------- 154 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS-------------
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc-------------
Confidence 1 23455555555555 35688999999999999999999999999999999999977643211
Q ss_pred ccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchh
Q 004866 628 EFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRY 707 (726)
Q Consensus 628 ~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (726)
+. ....+.. ++.|+|+++|..|..||+.++.++++.+++.+.+. ...+.+++++||...
T Consensus 155 ----~~------------~~~~~~~-~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~H~~~--- 213 (232)
T 1fj2_A 155 ----PQ------------GPIGGAN-RDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPA-NVTFKTYEGMMHSSC--- 213 (232)
T ss_dssp ----CS------------SCCCSTT-TTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGG-GEEEEEETTCCSSCC---
T ss_pred ----cc------------ccccccc-CCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCC-ceEEEEeCCCCcccC---
Confidence 00 0112333 67899999999999999999999999999876310 011222789999762
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 004866 708 LQCKESALETAFLIKMME 725 (726)
Q Consensus 708 ~~~~~~~~~~~fl~~~l~ 725 (726)
.+....+.+||.++|.
T Consensus 214 --~~~~~~i~~~l~~~l~ 229 (232)
T 1fj2_A 214 --QQEMMDVKQFIDKLLP 229 (232)
T ss_dssp --HHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHHHHhcC
Confidence 2334567899998874
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=153.91 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=132.5
Q ss_pred CCCCccEEEEEcCCCCCCCCccchHHHHHHHH--CCcEEEEEccCCCC------CCCCccccc-ccc---cCCCCcHHHH
Q 004866 490 KENQNPGLLHGHGAYGELLDKRWRSELKSLLD--RGWVVAFADVRGGG------GGGKKWHHD-GRR---TKKLNSIKDF 557 (726)
Q Consensus 490 ~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~d~RG~g------~~g~~~~~~-~~~---~~~~~~~~D~ 557 (726)
.+++.|+||++||..+.. ..|......|++ +||.|+.+|+||.+ ..+..|+.. +.+ ......+.+.
T Consensus 20 ~~~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~ 97 (226)
T 3cn9_A 20 APNADACIIWLHGLGADR--TDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNAS 97 (226)
T ss_dssp CTTCCEEEEEECCTTCCG--GGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHHHHH
T ss_pred CCCCCCEEEEEecCCCCh--HHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhHHHH
Confidence 345679999999976543 457788888888 99999999988532 112223221 111 1112234444
Q ss_pred HHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHH-cCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCC
Q 004866 558 ISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAIN-CCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG 633 (726)
Q Consensus 558 ~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~ 633 (726)
.+.+..+++.- .+++++|+++|+|+||.+++.++. ++|++++++|+.+|..+....+ +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~-------------~----- 159 (226)
T 3cn9_A 98 ADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL-------------A----- 159 (226)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC-------------C-----
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh-------------h-----
Confidence 44444444332 467889999999999999999999 9999999999999976543210 0
Q ss_pred ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHH
Q 004866 634 DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKES 713 (726)
Q Consensus 634 ~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 713 (726)
+.+ . .++.|+|+++|..|..||+.++.++++.++..+.+ ..+..++ +||.... +..
T Consensus 160 ----------~~~----~-~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~---~~~~~~~-~gH~~~~-----~~~ 215 (226)
T 3cn9_A 160 ----------LDE----R-HKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVE---VGWHDYP-MGHEVSL-----EEI 215 (226)
T ss_dssp ----------CCT----G-GGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCC---EEEEEES-CCSSCCH-----HHH
T ss_pred ----------hcc----c-ccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCc---eeEEEec-CCCCcch-----hhH
Confidence 010 2 25779999999999999999999999999987642 1222278 9997532 234
Q ss_pred HHHHHHHHHhh
Q 004866 714 ALETAFLIKMM 724 (726)
Q Consensus 714 ~~~~~fl~~~l 724 (726)
....+||.++|
T Consensus 216 ~~i~~~l~~~l 226 (226)
T 3cn9_A 216 HDIGAWLRKRL 226 (226)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 45789998775
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=168.87 Aligned_cols=230 Identities=12% Similarity=0.042 Sum_probs=145.6
Q ss_pred CCCceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHH-HHCC---cEEEEEccCCC
Q 004866 460 SEFYSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSL-LDRG---WVVAFADVRGG 534 (726)
Q Consensus 460 ~~~~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l-~~~G---~~v~~~d~RG~ 534 (726)
......+.+++.|. +|..++++++.|++..+++++|+|+++||+........+......+ .+.| ++|+.+++|++
T Consensus 13 ~~~~~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~ 92 (275)
T 2qm0_A 13 IITSNTEQWKMYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIE 92 (275)
T ss_dssp CCCTTEEEEEEECTTTCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCS
T ss_pred eecCCceEEEEEecCCCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCC
Confidence 34567888899987 7899999999999876667899999999975311101111111222 3457 99999999986
Q ss_pred CCCCC-----cccc---------cc-c----ccCCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc
Q 004866 535 GGGGK-----KWHH---------DG-R----RTKKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 535 g~~g~-----~~~~---------~~-~----~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
+.++. .+.. .. . ...+...+.|++ +.+.++.++-.+|++|++|+|+||||++++.++.+
T Consensus 93 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~ 172 (275)
T 2qm0_A 93 GAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFT 172 (275)
T ss_dssp SSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred CcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHh
Confidence 43321 0000 00 0 001111445544 23445555444788999999999999999999999
Q ss_pred CCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHH
Q 004866 594 CPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 594 ~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
+|++|+++++.+|.+.+.... ... .. +.+ +...+ .. ....|+++++|..|..++..+
T Consensus 173 ~p~~f~~~~~~s~~~~~~~~~-----------~~~--~~---~~~--~~~~~----~~-~~~~~~~l~~G~~D~~~~~~~ 229 (275)
T 2qm0_A 173 NLNAFQNYFISSPSIWWNNKS-----------VLE--KE---ENL--IIELN----NA-KFETGVFLTVGSLEREHMVVG 229 (275)
T ss_dssp CGGGCSEEEEESCCTTHHHHG-----------GGG--GT---THH--HHHHH----TC-SSCEEEEEEEETTSCHHHHHH
T ss_pred CchhhceeEEeCceeeeChHH-----------HHH--HH---HHH--Hhhhc----cc-CCCceEEEEeCCcccchhhHH
Confidence 999999999999987543210 000 00 011 11101 12 245678888999999899999
Q ss_pred HHHHHHHHH---hcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 674 AAKWVARVR---ESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 674 ~~~~~~~L~---~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
+.+++++|+ ++|+ ++.+ +++++|+...+ ....+.+.||.
T Consensus 230 ~~~~~~~L~~~~~~g~-----~~~~~~~~g~~H~~~~~----~~l~~~l~~l~ 273 (275)
T 2qm0_A 230 ANELSERLLQVNHDKL-----KFKFYEAEGENHASVVP----TSLSKGLRFIS 273 (275)
T ss_dssp HHHHHHHHHHCCCTTE-----EEEEEEETTCCTTTHHH----HHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCCc-----eEEEEECCCCCccccHH----HHHHHHHHHHh
Confidence 999999994 4442 3433 78999963221 22344566663
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-16 Score=154.30 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=133.3
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHC-----CcEEEEEccCCC------CCCCCcccccc-ccc---CCCCcHHH
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDR-----GWVVAFADVRGG------GGGGKKWHHDG-RRT---KKLNSIKD 556 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-----G~~v~~~d~RG~------g~~g~~~~~~~-~~~---~~~~~~~D 556 (726)
++.|+||++||..+.. ..|......|..+ |+.|+.++.++. +..+..|+... ... .....+++
T Consensus 21 ~~~p~vv~lHG~g~~~--~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 98 (239)
T 3u0v_A 21 RHSASLIFLHGSGDSG--QGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDV 98 (239)
T ss_dssp CCCEEEEEECCTTCCH--HHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHHH
T ss_pred CCCcEEEEEecCCCch--hhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHHH
Confidence 4679999999965532 3466667777765 799999998743 33344554321 111 11224555
Q ss_pred HHHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCC
Q 004866 557 FISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG 633 (726)
Q Consensus 557 ~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~ 633 (726)
+.+.+..++++ ..+++++++|+|+|+||++++.++.++|++++++|+.+|..+....
T Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------------------- 158 (239)
T 3u0v_A 99 MCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA-------------------- 158 (239)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH--------------------
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH--------------------
Confidence 55555555543 3368899999999999999999999999999999999987653210
Q ss_pred ChhHHHHHHhcCcccccccCCCCC-eEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHH
Q 004866 634 DIDDFHAIRNYSPYDNIQKDVLYP-AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKE 712 (726)
Q Consensus 634 ~~~~~~~~~~~sp~~~i~~~~~~P-~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 712 (726)
....+. .. ....| +|+++|..|..||+.++.+++++|++++.+ ..+.+++++||+.. .+.
T Consensus 159 ---~~~~~~-------~~-~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~---~~~~~~~g~~H~~~-----~~~ 219 (239)
T 3u0v_A 159 ---VYQALQ-------KS-NGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVT---TKFHSFPNVYHELS-----KTE 219 (239)
T ss_dssp ---HHHHHH-------HC-CSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCC---EEEEEETTCCSSCC-----HHH
T ss_pred ---HHHHHH-------hh-ccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCc---EEEEEeCCCCCcCC-----HHH
Confidence 011111 11 24566 999999999999999999999999998743 12222899999864 244
Q ss_pred HHHHHHHHHHhhc
Q 004866 713 SALETAFLIKMME 725 (726)
Q Consensus 713 ~~~~~~fl~~~l~ 725 (726)
.....+||.++|.
T Consensus 220 ~~~~~~~l~~~l~ 232 (239)
T 3u0v_A 220 LDILKLWILTKLP 232 (239)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC
Confidence 5567799998874
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-14 Score=153.40 Aligned_cols=246 Identities=12% Similarity=0.130 Sum_probs=160.0
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCC---------------
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN--------------- 189 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~--------------- 189 (726)
..++|||||++|||.....+.+..+|+++|+++|+...++....+..+.|||||+.|+|...+..
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 45789999999999987665567889999999998777654222778999999999999875410
Q ss_pred -------CCCceEEEEEcCCCCc-eeEEeeecCCceEEEEEEcCCCcEEEEEEcCC------C-ceEEEEEeCCCCCCCe
Q 004866 190 -------KRPYQIYCSIIGSTDE-DALLLEESNENVYVNIRHTKDFHFVCVHTFST------T-SSKVFLINAADPFSGL 254 (726)
Q Consensus 190 -------~~~~~l~~~~l~t~~~-~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~------~-~~~l~~~d~~~~~~~~ 254 (726)
....+||++++.+++. ..+.. + ....+.||||| |++..... . ..+||.+| + ++.
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~---~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~--~~~ 210 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK--P---RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--D--GKE 210 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE--E---TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--T--TEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC--C---CcccccCCCCe--EEEEEecccccccccccccEEEeC--C--Cce
Confidence 1135799999987653 33332 2 22357899999 55555432 2 56899999 4 455
Q ss_pred EEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE-EeeeCCEEEEEE
Q 004866 255 TLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED-VDFCKTHMALIL 333 (726)
Q Consensus 255 ~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~-~~~~~~~lv~~~ 333 (726)
+.+... .. ...++++|+.|++.++..... ...+..|+.++ . +.++.++ ...+..+.. +.+. +.+++..
T Consensus 211 ~~l~~~-~~-~~~~spdg~~l~~~~~~~~~~-~~~~~~l~~~d-~-----~~~~~l~-~~~~~~~~~~~~~s-dg~~~~~ 279 (347)
T 2gop_A 211 EKMFEK-VS-FYAVDSDGERILLYGKPEKKY-MSEHNKLYIYD-G-----KEVMGIL-DEVDRGVGQAKIKD-GKVYFTL 279 (347)
T ss_dssp EEEEEE-ES-EEEEEECSSCEEEEECCSSSC-CCSSCEEEEEC-S-----SCEEESS-TTCCSEEEEEEEET-TEEEEEE
T ss_pred EEeccC-cc-eeeECCCCCEEEEEEccccCC-ccccceEEEEC-C-----CceEecc-ccCCcccCCccEEc-CcEEEEE
Confidence 666554 22 233489999999988653211 11246788887 4 3344443 333445554 5555 5588888
Q ss_pred EeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEE
Q 004866 334 REGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNII 413 (726)
Q Consensus 334 ~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~ 413 (726)
..+|..+|+ ++ + +. ... .+..+..+..+. ++. .++++.++..+|.++|.+| ++.++|
T Consensus 280 ~~~~~~~l~-~~-~-g~---~~~-------~~~~~~~v~~~~----~s~---~~~~~~~~~~~~~~l~~~~---g~~~~l 336 (347)
T 2gop_A 280 FEEGSVNLY-IW-D-GE---IKP-------IAKGRHWIMGFD----VDE---IVVYLKETATRLRELFTWD---GEEKQL 336 (347)
T ss_dssp EETTEEEEE-EE-S-SS---EEE-------EECSSSEEEEEE----ESS---SEEEEEECSSSCCEEEEES---SSEEEC
T ss_pred ecCCcEEEE-Ec-C-Cc---eEE-------EecCCCeEEeee----eeC---cEEEEEcCCCChHHheEeC---CcEEEe
Confidence 889988888 87 3 21 011 112222222222 222 5889999999999999998 556555
Q ss_pred Ee
Q 004866 414 QQ 415 (726)
Q Consensus 414 ~~ 415 (726)
+.
T Consensus 337 t~ 338 (347)
T 2gop_A 337 TD 338 (347)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=155.24 Aligned_cols=197 Identities=10% Similarity=0.036 Sum_probs=134.0
Q ss_pred EEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH--CCcEEEEEccCC------CCCCCCccccc-ccc---cC
Q 004866 482 IIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD--RGWVVAFADVRG------GGGGGKKWHHD-GRR---TK 549 (726)
Q Consensus 482 l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~d~RG------~g~~g~~~~~~-~~~---~~ 549 (726)
++.|++ +++.|+||++||..+.. ..|......|++ +||.|+.+|.+| +|..+..|+.. +.+ ..
T Consensus 5 ~~~~~~---~~~~~~vv~~HG~~~~~--~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~ 79 (218)
T 1auo_A 5 LILQPA---KPADACVIWLHGLGADR--YDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSI 79 (218)
T ss_dssp EEECCS---SCCSEEEEEECCTTCCT--TTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEE
T ss_pred eecCCC---CCCCcEEEEEecCCCCh--hhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccccc
Confidence 345543 25679999999976543 457788888888 999999999874 33222333321 111 11
Q ss_pred CCCcHHHHHH----HHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH-cCCCceeEEEEeCCcccccccccCCCCCCChh
Q 004866 550 KLNSIKDFIS----CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN-CCPDLFRAVVLEVPFLDATNTLLYPILPLIAA 624 (726)
Q Consensus 550 ~~~~~~D~~~----~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~ 624 (726)
....+++..+ .++++.+ ..+++++++++|+|+||.+++.++. ++|++++++|+.+|..+.. .++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~------~~~---- 148 (218)
T 1auo_A 80 SLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF------GDE---- 148 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC------CTT----
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc------hhh----
Confidence 1123444444 4444443 2468889999999999999999999 9999999999999976540 000
Q ss_pred hhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC
Q 004866 625 DYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE 704 (726)
Q Consensus 625 ~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 704 (726)
... .... ++.|+++++|..|..||+.++.++++.+++.+.+ ..+..++ +||+..
T Consensus 149 ------~~~---------------~~~~-~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~---~~~~~~~-~gH~~~ 202 (218)
T 1auo_A 149 ------LEL---------------SASQ-QRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVT---VTWQEYP-MGHEVL 202 (218)
T ss_dssp ------CCC---------------CHHH-HTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCC---EEEEEES-CSSSCC
T ss_pred ------hhh---------------hhcc-cCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCc---eEEEEec-CCCccC
Confidence 000 0112 5779999999999999999999999999987642 1222278 999753
Q ss_pred chhhHHHHHHHHHHHHHHhhc
Q 004866 705 NRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 705 ~~~~~~~~~~~~~~fl~~~l~ 725 (726)
. +......+||.++|.
T Consensus 203 ~-----~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 203 P-----QEIHDIGAWLAARLG 218 (218)
T ss_dssp H-----HHHHHHHHHHHHHHC
T ss_pred H-----HHHHHHHHHHHHHhC
Confidence 3 234567789988763
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=161.53 Aligned_cols=211 Identities=11% Similarity=0.042 Sum_probs=132.2
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCC-----ccchHHHHHHHHCC----cEEEEEcc
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLD-----KRWRSELKSLLDRG----WVVAFADV 531 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~-----~~~~~~~~~l~~~G----~~v~~~d~ 531 (726)
...+.+.+++.+.+| .++++++.|++..+++++|+|+++||+.+.... ..+......|+++| ++|+.||.
T Consensus 37 ~~g~~~~~~~~s~~~-~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~ 115 (297)
T 1gkl_A 37 QAGRIVKETYTGING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTF 115 (297)
T ss_dssp SCCEEEEEEEEETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred CCceEEEEEEEcCCC-EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecC
Confidence 356788899999887 899999999987666789999999998654321 11234556777764 99999999
Q ss_pred CCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcC---------CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEE
Q 004866 532 RGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE---------IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVV 602 (726)
Q Consensus 532 RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---------~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 602 (726)
+|+.+.+..|.. ...+|++..++...... ..|+++++|+|+||||++++.++.++|++|++++
T Consensus 116 ~~~~~~~~~~~~--------~~~~~l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v 187 (297)
T 1gkl_A 116 NGGNCTAQNFYQ--------EFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFM 187 (297)
T ss_dssp CSTTCCTTTHHH--------HHHHTHHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEE
T ss_pred cCCccchHHHHH--------HHHHHHHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheee
Confidence 975432222210 01233333333222110 1377899999999999999999999999999999
Q ss_pred EeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHH
Q 004866 603 LEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVR 682 (726)
Q Consensus 603 ~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~ 682 (726)
+.+|...+.. . ... .......+... ..++. ...++++.+|..|.. +.++.+++++|+
T Consensus 188 ~~sg~~~~~~------~-----~~~------~~~~~~~~~~~---~~~~~-~~~~l~~~~G~~D~~--~~~~~~l~~~L~ 244 (297)
T 1gkl_A 188 PLSGDYWYGN------S-----PQD------KANSIAEAINR---SGLSK-REYFVFAATGSEDIA--YANMNPQIEAMK 244 (297)
T ss_dssp EESCCCCBSS------S-----HHH------HHHHHHHHHHH---HTCCT-TSCEEEEEEETTCTT--HHHHHHHHHHHH
T ss_pred EeccccccCC------c-----cch------hhhHHHHHHhh---ccCCc-CcEEEEEEeCCCccc--chhHHHHHHHHH
Confidence 9999764321 0 000 00111111111 11221 233344456777764 468899999999
Q ss_pred hcC-CC----CCCCcEEE--EcCCCCCC
Q 004866 683 EST-IY----DPKRPILL--NLTTDIVE 703 (726)
Q Consensus 683 ~~~-~~----~~~~~~~~--~~~~gH~~ 703 (726)
+++ .. .....+.+ ++++||..
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 245 ALPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp TSTTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HcCCccccccccCCceEEEECCCCCcCH
Confidence 987 10 00013333 88899963
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-16 Score=161.08 Aligned_cols=221 Identities=12% Similarity=0.045 Sum_probs=135.9
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCC-CCCCCcccc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGG-GGGGKKWHH 543 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~-g~~g~~~~~ 543 (726)
++...+.+.||.+|+++.+.|++. ..++.|+||++||..+.. ..|...+..|+++||.|+.+|+||+ |.+.....
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~~--~~~~~~~~~L~~~G~~Vi~~D~rGh~G~S~~~~~- 82 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSID- 82 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBCC---------
T ss_pred ceEEEEEcCCCCEEEEEEecCccc-CCCCCCEEEEecCCccCc--hHHHHHHHHHHHCCCEEEEeeCCCCCCCCCCccc-
Confidence 345567888999999887766532 123468999999965432 4688888999999999999999998 75532211
Q ss_pred cccccCC-CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc---cCCCC
Q 004866 544 DGRRTKK-LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL---LYPIL 619 (726)
Q Consensus 544 ~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~---~~~~~ 619 (726)
... ....+|+.+++++|.+.+ .+++.++|+||||.+++.++.+ | +++++|+.+|+.++.... .....
T Consensus 83 ----~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~~ 153 (305)
T 1tht_A 83 ----EFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFDY 153 (305)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSCG
T ss_pred ----ceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhhh
Confidence 011 112467777788886433 4789999999999999999987 7 789999888875432210 00000
Q ss_pred -CCChhhhc---cc-CCCCChh-HHHHHHhcC------cccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCC
Q 004866 620 -PLIAADYE---EF-GYPGDID-DFHAIRNYS------PYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIY 687 (726)
Q Consensus 620 -~~~~~~~~---~~-g~~~~~~-~~~~~~~~s------p~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~ 687 (726)
........ .+ +...... ......... +...+.+ ++.|+|+++|..|..||+..+.++++.+...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~PvLii~G~~D~~vp~~~~~~l~~~i~~~~-- 230 (305)
T 1tht_A 154 LSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVAN-TSVPLIAFTANNDDWVKQEEVYDMLAHIRTGH-- 230 (305)
T ss_dssp GGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTT-CCSCEEEEEETTCTTSCHHHHHHHHTTCTTCC--
T ss_pred hhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhh-cCCCEEEEEeCCCCccCHHHHHHHHHhcCCCC--
Confidence 00000000 00 0000000 111111111 1223444 88999999999999999999888877664322
Q ss_pred CCCCcEEEEcCCCCCCC
Q 004866 688 DPKRPILLNLTTDIVEE 704 (726)
Q Consensus 688 ~~~~~~~~~~~~gH~~~ 704 (726)
..+.+++++||...
T Consensus 231 ---~~l~~i~~agH~~~ 244 (305)
T 1tht_A 231 ---CKLYSLLGSSHDLG 244 (305)
T ss_dssp ---EEEEEETTCCSCTT
T ss_pred ---cEEEEeCCCCCchh
Confidence 12222799999764
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=167.33 Aligned_cols=145 Identities=21% Similarity=0.251 Sum_probs=101.9
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCC--CCCCccEEEEEcCCCCCCCCccch------HHHHHHHHCCcEEEEEccCC
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYK--KENQNPGLLHGHGAYGELLDKRWR------SELKSLLDRGWVVAFADVRG 533 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~--~~~~~P~vl~~hGg~~~~~~~~~~------~~~~~l~~~G~~v~~~d~RG 533 (726)
.+..+.+.+++.||..+.++.+.|.... +.++.|+||++||..+.. ..|. .....|+++||.|+++|+||
T Consensus 24 ~~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~--~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G 101 (377)
T 1k8q_A 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSRG 101 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCTT
T ss_pred CCCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCch--hhhhcCCCcccHHHHHHHCCCCEEEecCCC
Confidence 4567788899999999998776554311 113578999999976643 2232 23458899999999999999
Q ss_pred CCCCCCcccccccc-cCCCCcH----H-HHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEe
Q 004866 534 GGGGGKKWHHDGRR-TKKLNSI----K-DFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLE 604 (726)
Q Consensus 534 ~g~~g~~~~~~~~~-~~~~~~~----~-D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~ 604 (726)
+|.+...-...... .....++ + |+.++++++.++ .+.+++.++|||+||.+++.++.++|+ +++++|+.
T Consensus 102 ~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~ 179 (377)
T 1k8q_A 102 NTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYAL 179 (377)
T ss_dssp STTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEE
T ss_pred CCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEe
Confidence 98764321000000 0001233 3 666788887764 234789999999999999999999998 89999999
Q ss_pred CCcccc
Q 004866 605 VPFLDA 610 (726)
Q Consensus 605 ~p~~d~ 610 (726)
+|...+
T Consensus 180 ~~~~~~ 185 (377)
T 1k8q_A 180 APVATV 185 (377)
T ss_dssp SCCSCC
T ss_pred CCchhc
Confidence 987653
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=153.37 Aligned_cols=197 Identities=11% Similarity=0.062 Sum_probs=138.8
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEE--ccCCCCCCCCcccccc-cccC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA--DVRGGGGGGKKWHHDG-RRTK 549 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~--d~RG~g~~g~~~~~~~-~~~~ 549 (726)
.+|.++.. +.+.. .++.|+||++||..+.. ..|......|++ ||.|+.+ |.||.|.++ |.... ....
T Consensus 22 ~~~~~~~~--~~~~~---~~~~~~vv~~HG~~~~~--~~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~--~~~~~~~~~~ 91 (226)
T 2h1i_A 22 SNAMMKHV--FQKGK---DTSKPVLLLLHGTGGNE--LDLLPLAEIVDS-EASVLSVRGNVLENGMPR--FFRRLAEGIF 91 (226)
T ss_dssp HHSSSCEE--EECCS---CTTSCEEEEECCTTCCT--TTTHHHHHHHHT-TSCEEEECCSEEETTEEE--SSCEEETTEE
T ss_pred CCCceeEE--ecCCC---CCCCcEEEEEecCCCCh--hHHHHHHHHhcc-CceEEEecCcccCCcchh--hccccCccCc
Confidence 35666543 33321 14679999999976543 457777777877 9999999 888887532 22110 0000
Q ss_pred C----CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhh
Q 004866 550 K----LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAAD 625 (726)
Q Consensus 550 ~----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~ 625 (726)
. ...+.|+.+.++++.++..+++++++++|+|+||++++.++.++|++++++|+.+|..+...
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------- 158 (226)
T 2h1i_A 92 DEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------- 158 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------
T ss_pred ChhhHHHHHHHHHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------
Confidence 1 12244556666666776667889999999999999999999999999999999999754320
Q ss_pred hcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE-EEcCCCCCCC
Q 004866 626 YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL-LNLTTDIVEE 704 (726)
Q Consensus 626 ~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~-~~~~~gH~~~ 704 (726)
.......+.|+++++|..|..+|+..+.++++++++.+. .+. +++++||+..
T Consensus 159 ----------------------~~~~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~gH~~~ 211 (226)
T 2h1i_A 159 ----------------------MQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANA-----NVTMHWENRGHQLT 211 (226)
T ss_dssp ----------------------CCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTC-----EEEEEEESSTTSCC
T ss_pred ----------------------cccccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCC-----eEEEEeCCCCCCCC
Confidence 001112467999999999999999999999999998763 233 4789999763
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 004866 705 NRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 705 ~~~~~~~~~~~~~~fl~~~l 724 (726)
.+......+||.++|
T Consensus 212 -----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 212 -----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp -----HHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHhC
Confidence 234456678888765
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-16 Score=146.14 Aligned_cols=174 Identities=13% Similarity=0.060 Sum_probs=121.7
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
++.|+||++||..+......+......|+++||.|+.+|+||.|.+... .......+++.++++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~-------~~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDL-------GQLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGGG-------CTTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHhcC--C
Confidence 3568999999976544322344677889999999999999998764211 111122344455566666543 4
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccc
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ 651 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~ 651 (726)
.++++++|+|+||.+++.++.++| ++++|+.+|..+.... +. +.
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~------------------~~----------------~~ 116 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL------------------PA----------------LD 116 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB------------------CC----------------CC
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc------------------Cc----------------cc
Confidence 589999999999999999999988 8999999887654210 00 23
Q ss_pred cCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 652 KDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 652 ~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
. ++.|+++++|..|..||+.++.++++.+ ++ .+.++ ++||.... ...+......+||.+
T Consensus 117 ~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~-----~~~~~-~~~H~~~~--~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 117 A-AAVPISIVHAWHDELIPAADVIAWAQAR---SA-----RLLLV-DDGHRLGA--HVQAASRAFAELLQS 175 (176)
T ss_dssp C-CSSCEEEEEETTCSSSCHHHHHHHHHHH---TC-----EEEEE-SSCTTCTT--CHHHHHHHHHHHHHT
T ss_pred c-cCCCEEEEEcCCCCccCHHHHHHHHHhC---Cc-----eEEEe-CCCccccc--cHHHHHHHHHHHHHh
Confidence 3 6789999999999999999999999887 21 23336 89998632 222333345566653
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=155.26 Aligned_cols=225 Identities=17% Similarity=0.121 Sum_probs=133.6
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
++.+.||.+|.+... + ..|.||++||..+.. ..|...+..|+++||.|+++|+||+|.+...+
T Consensus 2 ~~~~~~g~~l~y~~~---G-----~g~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~------- 64 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDW---G-----SGKPVLFSHGWLLDA--DMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW------- 64 (271)
T ss_dssp EEECTTSCEEEEEEE---S-----SSSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTSCCCS-------
T ss_pred eEEcCCCCEEEEEcc---C-----CCCeEEEECCCCCcH--HHHHHHHHHHHhCCceEEEecCCCCccCCCCC-------
Confidence 367889998875432 1 235688999976643 56888888999999999999999999764321
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc-CCCceeEEEEeCCcccccccccC--CCCCCCh--
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC-CPDLFRAVVLEVPFLDATNTLLY--PILPLIA-- 623 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~~--~~~~~~~-- 623 (726)
...+++++.+.+..+++. .+.+++.++||||||++++.++.+ .|++++++|+.++.......... ...+...
T Consensus 65 -~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (271)
T 3ia2_A 65 -TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFA 141 (271)
T ss_dssp -SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHHH
Confidence 124566666666555543 234789999999999866665554 48999999988765432210000 0000000
Q ss_pred -----------hhhc-----cc----CCCCChhHH----------------H---HHHhcCcccccccCCCCCeEEEEec
Q 004866 624 -----------ADYE-----EF----GYPGDIDDF----------------H---AIRNYSPYDNIQKDVLYPAVLVTSS 664 (726)
Q Consensus 624 -----------~~~~-----~~----g~~~~~~~~----------------~---~~~~~sp~~~i~~~~~~P~lli~g~ 664 (726)
.... .+ +........ . .+...+....+.+ ++.|+|+|+|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~Lvi~G~ 220 (271)
T 3ia2_A 142 RFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAK-IDVPTLVIHGD 220 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTT-CCSCEEEEEET
T ss_pred HHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccC-CCCCEEEEEeC
Confidence 0000 00 111111000 0 0111111222344 88999999999
Q ss_pred CCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 665 FNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 665 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
.|..||+..+.++++++.... .+.+++++||.... ++..+......+||.
T Consensus 221 ~D~~~p~~~~~~~~~~~~~~~------~~~~~~~~gH~~~~-e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 221 GDQIVPFETTGKVAAELIKGA------ELKVYKDAPHGFAV-THAQQLNEDLLAFLK 270 (271)
T ss_dssp TCSSSCGGGTHHHHHHHSTTC------EEEEETTCCTTHHH-HTHHHHHHHHHHHHT
T ss_pred CCCcCChHHHHHHHHHhCCCc------eEEEEcCCCCcccc-cCHHHHHHHHHHHhh
Confidence 999999988666666553321 23337999996422 222233344567774
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=156.28 Aligned_cols=242 Identities=11% Similarity=0.050 Sum_probs=149.6
Q ss_pred eEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH---HHHHHHCCcEEEEEccCCCCCCCC
Q 004866 464 SCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE---LKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 464 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
+.+.+++.|. .|.+++++ .|++. + |+|+++||..+......|... .+.++++|++|+++|.+|++.|.
T Consensus 5 ~~~~~~~~s~~~~~~~~v~--~~p~~---~--~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~- 76 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQ--FQGGG---P--HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYT- 76 (280)
T ss_dssp CEEEEEEEETTTTEEEEEE--EECCS---S--SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTS-
T ss_pred eEEEEEEECcccCceeEEE--EcCCC---C--CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCcccc-
Confidence 3455666654 56777765 34432 2 588999998532222345432 24567789999999988654442
Q ss_pred cccccccc--cCCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc
Q 004866 540 KWHHDGRR--TKKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 615 (726)
Q Consensus 540 ~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 615 (726)
.|...... ......+.+++ +.+.++.++--+++++++|+|+||||++++.++.++|++|+++|+.+|.+++.....
T Consensus 77 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 156 (280)
T 1dqz_A 77 DWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWW 156 (280)
T ss_dssp BCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTH
T ss_pred CCCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcch
Confidence 12111100 00123555543 334444432335778999999999999999999999999999999999887542100
Q ss_pred CCCCC------CChhhhcccCCCCChhHHHHHHhcCcccccccC--CCCCeEEEEecCCC--------------CcChHH
Q 004866 616 YPILP------LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD--VLYPAVLVTSSFNT--------------RFGVWE 673 (726)
Q Consensus 616 ~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~--~~~P~lli~g~~D~--------------~V~~~~ 673 (726)
...+. ........||.+.. ..+.+.+|+.++.+. ...|+++.+|..|. .++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~ 232 (280)
T 1dqz_A 157 PTLIGLAMNDSGGYNANSMWGPSSD----PAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRT 232 (280)
T ss_dssp HHHHHHHHHHTTSCCHHHHHCSTTS----HHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhccCcCHHHhcCCCCc----hhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHH
Confidence 00000 00001123565542 245677888766531 24677777877786 578999
Q ss_pred HHHHHHHHHhcC-CCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 674 AAKWVARVREST-IYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 674 ~~~~~~~L~~~~-~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.+++++|+++| ++ +.+ +++++|.... --......+.||.+.||
T Consensus 233 ~~~~~~~L~~~g~~~-----~~~~~~~~g~H~~~~---w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 233 NQTFRDTYAADGGRN-----GVFNFPPNGTHSWPY---WNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHTTCCS-----EEEECCSCCCSSHHH---HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCc-----eEEEecCCCccChHH---HHHHHHHHHHHHHHHhC
Confidence 999999999987 63 344 5788996422 12334556789988886
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=153.20 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=134.7
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc-C---
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT-K--- 549 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~-~--- 549 (726)
++..+.. +++|++. .+.|+||++||..+.. ..|......|++ ||.|+.+|.++....|..|+...... .
T Consensus 14 ~~~~l~~-~~~~~~~---~~~p~vv~lHG~g~~~--~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~ 86 (223)
T 3b5e_A 14 TDLAFPY-RLLGAGK---ESRECLFLLHGSGVDE--TTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQK 86 (223)
T ss_dssp CSSSSCE-EEESTTS---SCCCEEEEECCTTBCT--TTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHH
T ss_pred cCCCceE-EEeCCCC---CCCCEEEEEecCCCCH--HHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccHH
Confidence 3445554 3445432 2348999999975533 356666677665 99999999887533355554322110 0
Q ss_pred -CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcc
Q 004866 550 -KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEE 628 (726)
Q Consensus 550 -~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~ 628 (726)
.....+|+.+.++++.++..++++|++|+|+|+||.+++.++.++|++++++|+.+|......
T Consensus 87 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------------- 150 (223)
T 3b5e_A 87 SILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH---------------- 150 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc----------------
Confidence 112345666677777665456889999999999999999999999999999999998754210
Q ss_pred cCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhh
Q 004866 629 FGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYL 708 (726)
Q Consensus 629 ~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~ 708 (726)
+ + ... ..+.|+++++|..|..||+.++. +++.|++++.+ ..+..++ +||....
T Consensus 151 ---~-------------~--~~~-~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~---~~~~~~~-~gH~~~~--- 203 (223)
T 3b5e_A 151 ---V-------------P--ATD-LAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAE---VDARIIP-SGHDIGD--- 203 (223)
T ss_dssp ---C-------------C--CCC-CTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCE---EEEEEES-CCSCCCH---
T ss_pred ---c-------------c--ccc-ccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCc---eEEEEec-CCCCcCH---
Confidence 0 0 112 25679999999999999999999 99999988742 1122277 9997643
Q ss_pred HHHHHHHHHHHHHHhh
Q 004866 709 QCKESALETAFLIKMM 724 (726)
Q Consensus 709 ~~~~~~~~~~fl~~~l 724 (726)
+......+||.+.+
T Consensus 204 --~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 204 --PDAAIVRQWLAGPI 217 (223)
T ss_dssp --HHHHHHHHHHHCC-
T ss_pred --HHHHHHHHHHHhhh
Confidence 22345678887654
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=151.11 Aligned_cols=215 Identities=14% Similarity=0.109 Sum_probs=139.0
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
.+...||.+|.+...- +.|+||++||..+.. ..|......|. +||.|+.+|+||+|.+...
T Consensus 6 ~~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~-------- 66 (262)
T 3r0v_A 6 TVPSSDGTPIAFERSG--------SGPPVVLVGGALSTR--AGGAPLAERLA-PHFTVICYDRRGRGDSGDT-------- 66 (262)
T ss_dssp EEECTTSCEEEEEEEE--------CSSEEEEECCTTCCG--GGGHHHHHHHT-TTSEEEEECCTTSTTCCCC--------
T ss_pred eEEcCCCcEEEEEEcC--------CCCcEEEECCCCcCh--HHHHHHHHHHh-cCcEEEEEecCCCcCCCCC--------
Confidence 3677899988864421 247899999976644 45777777777 8999999999999976432
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCC------
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLI------ 622 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~------ 622 (726)
...+++|+.+.+..+++. .+ +++.++|+|+||.+++.++.++| +++++|+.+|................
T Consensus 67 -~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (262)
T 3r0v_A 67 -PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTRLDAL 141 (262)
T ss_dssp -SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHHHHHH
Confidence 134678887777777764 23 79999999999999999999999 99999999987654321100000000
Q ss_pred ----------hhhhcc-cCCCCChhHHHHHHhc------------------------CcccccccCCCCCeEEEEecCCC
Q 004866 623 ----------AADYEE-FGYPGDIDDFHAIRNY------------------------SPYDNIQKDVLYPAVLVTSSFNT 667 (726)
Q Consensus 623 ----------~~~~~~-~g~~~~~~~~~~~~~~------------------------sp~~~i~~~~~~P~lli~g~~D~ 667 (726)
...... .+.+ ++..+.+... .+...+.+ ++.|+|+++|+.|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~ 218 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGVP--PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFAS-ISIPTLVMDGGASP 218 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCCC--HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTT-CCSCEEEEECTTCC
T ss_pred hhccchhhHHHHHhhcccCCC--HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCc-CCCCEEEEeecCCC
Confidence 000000 1111 1122222211 12233444 78999999999999
Q ss_pred CcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 668 RFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 668 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
.+|+..+.++.+.+... .+.+++++||. .. ..+....+.+||.
T Consensus 219 ~~~~~~~~~~~~~~~~~-------~~~~~~~~gH~-~~---p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 219 AWIRHTAQELADTIPNA-------RYVTLENQTHT-VA---PDAIAPVLVEFFT 261 (262)
T ss_dssp HHHHHHHHHHHHHSTTE-------EEEECCCSSSS-CC---HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhCCCC-------eEEEecCCCcc-cC---HHHHHHHHHHHHh
Confidence 99999988888877432 22237899994 22 2223334556764
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=147.51 Aligned_cols=118 Identities=21% Similarity=0.246 Sum_probs=88.5
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+++.||.+|.+... + +.|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+... .
T Consensus 3 ~~~~~g~~l~y~~~---g-----~~~~vvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~--------~ 64 (273)
T 1a8s_A 3 FTTRDGTQIYYKDW---G-----SGQPIVFSHGWPLNA--DSWESQMIFLAAQGYRVIAHDRRGHGRSSQP--------W 64 (273)
T ss_dssp EECTTSCEEEEEEE---S-----CSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------S
T ss_pred EecCCCcEEEEEEc---C-----CCCEEEEECCCCCcH--HHHhhHHhhHhhCCcEEEEECCCCCCCCCCC--------C
Confidence 56789988765332 1 236799999976543 4688888899999999999999999976432 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPF 607 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~ 607 (726)
...+++++.+.+..+++. .+.+++.++||||||.+++.++.++ |++++++|+.++.
T Consensus 65 ~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (273)
T 1a8s_A 65 SGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV 121 (273)
T ss_dssp SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEccc
Confidence 124667776666666654 2446899999999999998866655 9999999988764
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=145.29 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=88.5
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+++.||.+|.+... + +.|.||++||..+.. ..|...+..|+++||.|+++|+||+|.+....
T Consensus 3 ~~~~~g~~l~y~~~---g-----~g~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------- 64 (274)
T 1a8q_A 3 CTTRDGVEIFYKDW---G-----QGRPVVFIHGWPLNG--DAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW-------- 64 (274)
T ss_dssp EECTTSCEEEEEEE---C-----SSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS--------
T ss_pred EEccCCCEEEEEec---C-----CCceEEEECCCcchH--HHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCC--------
Confidence 56788988765332 1 236799999976543 46888888999999999999999999764321
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPF 607 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~ 607 (726)
...+++++.+.+..++++ .+.+++.++||||||.+++.++.++ |++++++|+.++.
T Consensus 65 ~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (274)
T 1a8q_A 65 DGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAI 121 (274)
T ss_dssp SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CCCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCC
Confidence 124667776666666654 2346899999999999998866665 9999999998864
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-15 Score=149.95 Aligned_cols=196 Identities=16% Similarity=0.119 Sum_probs=133.1
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCC-CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKK-ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~-~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
..+..+...+... +.+++|++... +++.|+||++||+.+. ...|......|+++||.|+.+|+||++
T Consensus 21 g~~~v~~~~~~~~------~~~~~p~~~~~~g~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~~s~---- 88 (258)
T 2fx5_A 21 GPYTVSSQSEGPS------CRIYRPRDLGQGGVRHPVILWGNGTGAG--PSTYAGLLSHWASHGFVVAAAETSNAG---- 88 (258)
T ss_dssp CSCCEEEEEETTT------EEEEEESSTTGGGCCEEEEEEECCTTCC--GGGGHHHHHHHHHHTCEEEEECCSCCT----
T ss_pred CCcceeeeeccCc------EEEEeCCCCcccCCCceEEEEECCCCCC--chhHHHHHHHHHhCCeEEEEecCCCCc----
Confidence 3445555544432 66888875322 2378999999997663 356778888999999999999999641
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHHc---------CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccc
Q 004866 540 KWHHDGRRTKKLNSIKDFISCARFLIEK---------EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 540 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~---------~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~ 610 (726)
...|+..+++++.+. ..++.++++++|+||||++++.++ .+++++++|+..|....
T Consensus 89 -------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~ 153 (258)
T 2fx5_A 89 -------------TGREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG 153 (258)
T ss_dssp -------------TSHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS
T ss_pred -------------cHHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc
Confidence 224555666666542 245778999999999999999887 46789999987764321
Q ss_pred cccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHH-HHHHHHHHHhcCCCCC
Q 004866 611 TNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWE-AAKWVARVRESTIYDP 689 (726)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~-~~~~~~~L~~~~~~~~ 689 (726)
.+.. ...+.+ ++.|+|+++|..|..+|+.. +.+++++. +.+
T Consensus 154 --------------------~~~~------------~~~~~~-i~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~-- 195 (258)
T 2fx5_A 154 --------------------LGHD------------SASQRR-QQGPMFLMSGGGDTIAFPYLNAQPVYRRA---NVP-- 195 (258)
T ss_dssp --------------------TTCC------------GGGGGC-CSSCEEEEEETTCSSSCHHHHTHHHHHHC---SSC--
T ss_pred --------------------cccc------------hhhhcc-CCCCEEEEEcCCCcccCchhhHHHHHhcc---CCC--
Confidence 0110 012333 77899999999999999986 77777762 211
Q ss_pred CCcEEEEcCCCCCCCc-hhhHHHHHHHHHHHHHHhh
Q 004866 690 KRPILLNLTTDIVEEN-RYLQCKESALETAFLIKMM 724 (726)
Q Consensus 690 ~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~fl~~~l 724 (726)
..+.+++++||+... ... .....+.+||.++|
T Consensus 196 -~~~~~~~g~~H~~~~~~~~--~~~~~i~~fl~~~l 228 (258)
T 2fx5_A 196 -VFWGERRYVSHFEPVGSGG--AYRGPSTAWFRFQL 228 (258)
T ss_dssp -EEEEEESSCCTTSSTTTCG--GGHHHHHHHHHHHH
T ss_pred -eEEEEECCCCCccccchHH--HHHHHHHHHHHHHh
Confidence 122227999998644 222 23344678988776
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=168.15 Aligned_cols=242 Identities=13% Similarity=0.062 Sum_probs=148.7
Q ss_pred EEECCCCcEEEEEEEEcCC---CCCCCCccEEEEEcCCCCCCCCccchHHHHHHH----HCCc---EEEEEccCCCCCCC
Q 004866 469 DVPSHDGISVPLTIIYSPK---YKKENQNPGLLHGHGAYGELLDKRWRSELKSLL----DRGW---VVAFADVRGGGGGG 538 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~---~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~----~~G~---~v~~~d~RG~g~~g 538 (726)
.+.+.||.+|.+..+.|++ ..+.++.|+||++||..+.. ..|...+..|+ +.|| .|+++|+||+|.+.
T Consensus 24 ~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~--~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G~G~S~ 101 (398)
T 2y6u_A 24 TLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSK--VVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSA 101 (398)
T ss_dssp BSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCG--GGGGGGGGGSCCCBTTTTEEEEEEEEECCTTSHHHH
T ss_pred cccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcH--HHHHHHHHHHHHhhhhcCcceeEEEEEcCCCCCCCC
Confidence 3567899999998887764 11234568999999976643 45677777787 3489 99999999998643
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHc--C--CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEK--E--IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~--~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
..- .+ ......++.++.+.+..+++. + -+++.++.++|+||||.+++.++.++|++++++|+.+|+.......
T Consensus 102 ~~~--~~-~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 178 (398)
T 2y6u_A 102 VRN--RG-RLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKAI 178 (398)
T ss_dssp HHT--TT-TBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCCC
T ss_pred CCC--cc-ccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccccccc
Confidence 210 00 001124555555555544443 2 1344569999999999999999999999999999999987642100
Q ss_pred c--CCCCC-----CCh-----------------h----hhc--ccCCCCChhHHHHHHhc--------------------
Q 004866 615 L--YPILP-----LIA-----------------A----DYE--EFGYPGDIDDFHAIRNY-------------------- 644 (726)
Q Consensus 615 ~--~~~~~-----~~~-----------------~----~~~--~~g~~~~~~~~~~~~~~-------------------- 644 (726)
. ....+ +.. . ... .+....+++..+.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 2y6u_A 179 GAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKME 258 (398)
T ss_dssp SCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESSC
T ss_pred ccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecCC
Confidence 0 00000 000 0 000 01111222332222210
Q ss_pred ----------------CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhh
Q 004866 645 ----------------SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYL 708 (726)
Q Consensus 645 ----------------sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~ 708 (726)
.....+.. ++.|+|+|+|+.|..||+..+.++++.+... .+.+++++||.... +.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~-i~~PvLii~G~~D~~~~~~~~~~l~~~~~~~-------~~~~~~~~gH~~~~-e~ 329 (398)
T 2y6u_A 259 QAQNLLCYMNMQTFAPFLISNVKF-VRKRTIHIVGARSNWCPPQNQLFLQKTLQNY-------HLDVIPGGSHLVNV-EA 329 (398)
T ss_dssp HHHHHHTTSCGGGTHHHHHHHGGG-CCSEEEEEEETTCCSSCHHHHHHHHHHCSSE-------EEEEETTCCTTHHH-HS
T ss_pred chhhhhhhcccccchHHHHHhccc-cCCCEEEEEcCCCCCCCHHHHHHHHHhCCCc-------eEEEeCCCCccchh-cC
Confidence 01123444 7899999999999999999998888777532 22237999996322 22
Q ss_pred HHHHHHHHHHHHHHhh
Q 004866 709 QCKESALETAFLIKMM 724 (726)
Q Consensus 709 ~~~~~~~~~~fl~~~l 724 (726)
.......+.+||.+.+
T Consensus 330 p~~~~~~i~~fl~~~~ 345 (398)
T 2y6u_A 330 PDLVIERINHHIHEFV 345 (398)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2233445678887765
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-16 Score=148.99 Aligned_cols=184 Identities=10% Similarity=-0.094 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDR--GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
|+||++||..++..........+++.++ ||.|++||++|+|. |..+.++.++.+ .++
T Consensus 3 ptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~~g~-------------------~~~~~l~~~~~~--~~~ 61 (202)
T 4fle_A 3 STLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPPYPA-------------------EAAEMLESIVMD--KAG 61 (202)
T ss_dssp CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCSSHH-------------------HHHHHHHHHHHH--HTT
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCCCHH-------------------HHHHHHHHHHHh--cCC
Confidence 8999999853332211112334556654 59999999998762 233444444433 245
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCC--ChhHHHHHHhcCccccc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG--DIDDFHAIRNYSPYDNI 650 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~sp~~~i 650 (726)
++|+|+|+||||++++.++.++|+...+++...+..+.......... ....+.+. ....... ..+....+
T Consensus 62 ~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~ 133 (202)
T 4fle_A 62 QSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQ------NPYTGQKYVLESRHIYD--LKAMQIEK 133 (202)
T ss_dssp SCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEE------CTTTCCEEEECHHHHHH--HHTTCCSS
T ss_pred CcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhc------cccccccccchHHHHHH--HHhhhhhh
Confidence 79999999999999999999999988777766665443321110000 00001111 1112222 22334445
Q ss_pred ccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 651 QKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 651 ~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
.+ ++.|+|+|||..|..||++++.++++ + .+ +++++++||.+...++.++ .+.+||.
T Consensus 134 ~~-~~~P~LiihG~~D~~Vp~~~s~~l~~-----~----~~-l~i~~g~~H~~~~~~~~~~---~I~~FL~ 190 (202)
T 4fle_A 134 LE-SPDLLWLLQQTGDEVLDYRQAVAYYT-----P----CR-QTVESGGNHAFVGFDHYFS---PIVTFLG 190 (202)
T ss_dssp CS-CGGGEEEEEETTCSSSCHHHHHHHTT-----T----SE-EEEESSCCTTCTTGGGGHH---HHHHHHT
T ss_pred hc-cCceEEEEEeCCCCCCCHHHHHHHhh-----C----CE-EEEECCCCcCCCCHHHHHH---HHHHHHh
Confidence 54 78999999999999999999988762 1 12 3337999998755444443 4568885
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=160.92 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=132.2
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCC--------------Cc
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG--------------KK 540 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g--------------~~ 540 (726)
...+|.....|. ..+++.|+||++||+.+.. ..|....+.|+++||+|+++|+||+|... ..
T Consensus 81 ~~~~p~~~~~P~--~~~~~~P~Vv~~HG~~~~~--~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~ 156 (383)
T 3d59_A 81 SMTTPANWNSPL--RPGEKYPLVVFSHGLGAFR--TLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKS 156 (383)
T ss_dssp TCEESSEETCCB--CCSSCEEEEEEECCTTCCT--TTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCE
T ss_pred ceeeccccCCCc--ccCCCCCEEEEcCCCCCCc--hHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCce
Confidence 345554433332 2345789999999986643 45788889999999999999999987642 12
Q ss_pred ccccccc--c--C------CCCcHHHHHHHHHHHHH--------------------cCCCCCCcEEEEEecccHHHHHHH
Q 004866 541 WHHDGRR--T--K------KLNSIKDFISCARFLIE--------------------KEIVKEHKLAGWGYSAGGLLVAAA 590 (726)
Q Consensus 541 ~~~~~~~--~--~------~~~~~~D~~~~~~~l~~--------------------~~~~d~~ri~i~G~S~GG~l~~~~ 590 (726)
|...... . . -....+|+.+++++|.+ ++.+|++||+++|+|+||.+++.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~ 236 (383)
T 3d59_A 157 WLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQT 236 (383)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHH
Confidence 2110000 0 0 00124688899999876 456788999999999999999999
Q ss_pred HHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcC
Q 004866 591 INCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFG 670 (726)
Q Consensus 591 ~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~ 670 (726)
+.+.| +++++|+..|... + ...+. .. .++.|+|++||+.|..+
T Consensus 237 a~~~~-~v~a~v~~~~~~~----------p------------~~~~~------------~~-~i~~P~Lii~g~~D~~~- 279 (383)
T 3d59_A 237 LSEDQ-RFRCGIALDAWMF----------P------------LGDEV------------YS-RIPQPLFFINSEYFQYP- 279 (383)
T ss_dssp HHHCT-TCCEEEEESCCCT----------T------------CCGGG------------GG-SCCSCEEEEEETTTCCH-
T ss_pred HhhCC-CccEEEEeCCccC----------C------------Cchhh------------hc-cCCCCEEEEecccccch-
Confidence 88754 6999998877321 1 00000 12 26789999999998643
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc---------------------hhhHHHHH-HHHHHHHHHhhc
Q 004866 671 VWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN---------------------RYLQCKES-ALETAFLIKMME 725 (726)
Q Consensus 671 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~---------------------~~~~~~~~-~~~~~fl~~~l~ 725 (726)
. ..+..++|.+++.+ ..++.+++++|+... .....+.. +.+++||.++|+
T Consensus 280 -~-~~~~~~~l~~~~~~---~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~ 351 (383)
T 3d59_A 280 -A-NIIKMKKCYSPDKE---RKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLG 351 (383)
T ss_dssp -H-HHHHHHTTCCTTSC---EEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -h-hHHHHHHHHhcCCc---eEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcC
Confidence 2 23334556555432 222228999997521 11122333 357899999985
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=148.69 Aligned_cols=226 Identities=13% Similarity=0.009 Sum_probs=136.8
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccc-hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRW-RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~-~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
+...+|.++ .++.|++ ++.|+||++|||.... ....| ......+++.||.|+.+|||+.++.
T Consensus 9 ~~~~~~~~~--~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~---------- 72 (274)
T 2qru_A 9 QTLANGATV--TIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT---------- 72 (274)
T ss_dssp EECTTSCEE--EEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS----------
T ss_pred ccccCCeeE--EEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC----------
Confidence 445577655 4555543 4579999999975322 22234 3455667788999999999987642
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH---cCCCceeEEEEeCCcccccccccCC--CCCC-
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN---CCPDLFRAVVLEVPFLDATNTLLYP--ILPL- 621 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~p~~d~~~~~~~~--~~~~- 621 (726)
..+..++|+.++++||.++.. +++||+|+|+|+||.+++.++. ..+.+.+++|+.+|+.|........ ..+.
T Consensus 73 -~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~ 150 (274)
T 2qru_A 73 -KIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAI 150 (274)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCC
T ss_pred -CCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccc
Confidence 223468999999999997643 2789999999999999999887 3577889999998887722100000 0110
Q ss_pred Chhhhccc-------CCCCChhH-----------HHHHHhc--------Cccc--ccccCCCCCeEEEEecCCCCcChHH
Q 004866 622 IAADYEEF-------GYPGDIDD-----------FHAIRNY--------SPYD--NIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 622 ~~~~~~~~-------g~~~~~~~-----------~~~~~~~--------sp~~--~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
.......+ ........ ...+... .++. .+.. . .|+|+++|+.|..++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l-pP~li~~G~~D~~~~~~~ 228 (274)
T 2qru_A 151 SAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKT-F-PPCFSTASSSDEEVPFRY 228 (274)
T ss_dssp CSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHT-S-CCEEEEEETTCSSSCTHH
T ss_pred cHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcC-C-CCEEEEEecCCCCcCHHH
Confidence 00000000 00000000 0001100 0111 1222 3 689999999998889888
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCch---hhHHHHHHHHHHHHHH
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEENR---YLQCKESALETAFLIK 722 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~fl~~ 722 (726)
+.++.+++... + +.++++++|++... ....+....+.+||.+
T Consensus 229 ~~~l~~~~~~~------~-l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 229 SKKIGRTIPES------T-FKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp HHHHHHHSTTC------E-EEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCc------E-EEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 88888776532 2 22279999986431 1222335556788865
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-15 Score=148.83 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=96.7
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..||.+|.+...-+ ++.|+||++||..+.. ..|......|+++||.|+.+|+||.|.+.... ....
T Consensus 10 ~~~g~~l~~~~~g~------~~~~~vv~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~------~~~~ 75 (286)
T 3qit_A 10 EFGGNQICLCSWGS------PEHPVVLCIHGILEQG--LAWQEVALPLAAQGYRVVAPDLFGHGRSSHLE------MVTS 75 (286)
T ss_dssp EETTEEEEEEEESC------TTSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS------SGGG
T ss_pred ecCCceEEEeecCC------CCCCEEEEECCCCccc--chHHHHHHHhhhcCeEEEEECCCCCCCCCCCC------CCCC
Confidence 34888888765422 2358999999986643 46788889999999999999999999764321 1123
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT 611 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 611 (726)
..++++.+.+..++++ .+.+++.++|+|+||++++.++.++|++++++|+.+|.....
T Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~ 133 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAE 133 (286)
T ss_dssp CSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCC
T ss_pred cCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCc
Confidence 4677888777777765 244789999999999999999999999999999999876543
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=146.29 Aligned_cols=193 Identities=13% Similarity=0.051 Sum_probs=128.4
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH--HHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS--ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
.||.+|++.++.|++ +++.|+||++||+.+.. ..|.. ....|+++||.|+.+|+||+|.............
T Consensus 14 ~~g~~l~~~~~~p~~---~~~~~~vv~~hG~~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~-- 86 (210)
T 1imj_A 14 VQGQALFFREALPGS---GQARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGE-- 86 (210)
T ss_dssp ETTEEECEEEEECSS---SCCSCEEEECCCTTCCH--HHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSCCSSCTTS--
T ss_pred eCCeEEEEEEeCCCC---CCCCceEEEECCCCCcc--ceeecchhHHHHHHCCCeEEEecCCCCCCCCCCCCcchhhh--
Confidence 389999998887764 23568999999976543 34555 4788999999999999999986543321100000
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccC
Q 004866 551 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 630 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g 630 (726)
....+|+.+.++.+ +.++++++|+|+||.+++.++.++|++++++|+.+|.....
T Consensus 87 ~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------------------- 141 (210)
T 1imj_A 87 LAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK------------------- 141 (210)
T ss_dssp CCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG-------------------
T ss_pred cchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc-------------------
Confidence 00114555555544 34689999999999999999999999999999988864311
Q ss_pred CCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHH
Q 004866 631 YPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQC 710 (726)
Q Consensus 631 ~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 710 (726)
.. .. .+.+ ++.|+++++|..|. +++..+.++ +.+.. ..+.+++++||.... ....
T Consensus 142 --~~---~~---------~~~~-~~~p~l~i~g~~D~-~~~~~~~~~-~~~~~-------~~~~~~~~~~H~~~~-~~~~ 196 (210)
T 1imj_A 142 --IN---AA---------NYAS-VKTPALIVYGDQDP-MGQTSFEHL-KQLPN-------HRVLIMKGAGHPCYL-DKPE 196 (210)
T ss_dssp --SC---HH---------HHHT-CCSCEEEEEETTCH-HHHHHHHHH-TTSSS-------EEEEEETTCCTTHHH-HCHH
T ss_pred --cc---ch---------hhhh-CCCCEEEEEcCccc-CCHHHHHHH-hhCCC-------CCEEEecCCCcchhh-cCHH
Confidence 00 01 1222 67899999999999 988877766 44422 122237899996322 1122
Q ss_pred HHHHHHHHHHHH
Q 004866 711 KESALETAFLIK 722 (726)
Q Consensus 711 ~~~~~~~~fl~~ 722 (726)
.......+||.+
T Consensus 197 ~~~~~i~~fl~~ 208 (210)
T 1imj_A 197 EWHTGLLDFLQG 208 (210)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 223445677754
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=156.03 Aligned_cols=226 Identities=13% Similarity=0.043 Sum_probs=138.7
Q ss_pred CCCceEEEEEEECCC-CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCC
Q 004866 460 SEFYSCEQYDVPSHD-GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGG 537 (726)
Q Consensus 460 ~~~~~~~~~~~~s~d-G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~ 537 (726)
......+.+++.|.+ |..++++|+.|++..+++++|+|++.||+.... .......+.|++ .+.+|+.+++++...+
T Consensus 8 ~~~~~~~~~~~~S~~~~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~--~~~~~~~~~l~~~~~~ivV~v~~~~~~~~ 85 (278)
T 2gzs_A 8 SVFYHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMD--RLDDELLKQLSEKTPPVIVAVGYQTNLPF 85 (278)
T ss_dssp CSSEEEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHH--HCCHHHHHHHTTSCCCEEEEEEESSSSSC
T ss_pred CCCCceEEEEEEcCCCCceEEEEEECCCCCCCCCCCCEEEEeeChhHHH--HHHHHHHHHhccCCCeEEEEEcCCCCCcC
Confidence 456678889999887 689999999999876677899887777753211 111223355555 6888888888764311
Q ss_pred -----CCcccccc-------------cccCCCCcHHHHHH--HHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc
Q 004866 538 -----GKKWHHDG-------------RRTKKLNSIKDFIS--CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597 (726)
Q Consensus 538 -----g~~~~~~~-------------~~~~~~~~~~D~~~--~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~ 597 (726)
+..+.... ....+...+.+++. .+.++.++-.+|++|++|+|+||||++++.++.+ |++
T Consensus 86 ~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~ 164 (278)
T 2gzs_A 86 DLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSY 164 (278)
T ss_dssp CHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSS
T ss_pred cccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccc
Confidence 11111100 00011122333331 2233334444788999999999999999999999 999
Q ss_pred eeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCc--------
Q 004866 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRF-------- 669 (726)
Q Consensus 598 f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V-------- 669 (726)
|+++++.+|.+.+... .....+.++.+. .. ...|++|.+|..|.++
T Consensus 165 f~~~~~~s~~~~~~~~----------------------~~~~~~~~~~~~---~~-~~~~i~l~~G~~d~~~~~~~~~~~ 218 (278)
T 2gzs_A 165 FRSYYSASPSLGRGYD----------------------ALLSRVTAVEPL---QF-CTKHLAIMEGSATQGDNRETHAVG 218 (278)
T ss_dssp CSEEEEESGGGSTTHH----------------------HHHHHHHTSCTT---TT-TTCEEEEEECCC-----------C
T ss_pred cCeEEEeCcchhcCcc----------------------hHHHHHHHhhcc---CC-CCCcEEEEecCccccccccchhhh
Confidence 9999999996533210 011112222211 11 2346677788888654
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 670 GVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 670 ~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
+..++.+++++|+++|++ +.+ +++++|+. ..+....+.+.||.++
T Consensus 219 ~~~~~~~~~~~L~~~g~~-----~~~~~~~g~~H~~----~~~~~~~~~l~fl~~~ 265 (278)
T 2gzs_A 219 VLSKIHTTLTILKDKGVN-----AVFWDFPNLGHGP----MFNASFRQALLDISGE 265 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC-----EEEEECTTCCHHH----HHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcCCCe-----eEEEEcCCCCccc----hhHHHHHHHHHHHhhC
Confidence 578999999999998853 333 78889963 2233345567787653
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-14 Score=157.20 Aligned_cols=230 Identities=13% Similarity=0.041 Sum_probs=140.3
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
.+.+.+.||.+|.+... +..|+||++||+.+.. ..|......|+++||.|+.+|+||+|.+....
T Consensus 5 ~~~~~~~dG~~l~y~~~--------G~gp~VV~lHG~~~~~--~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~~----- 69 (456)
T 3vdx_A 5 TVGQENSTSIDLYYEDH--------GTGVPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQPT----- 69 (456)
T ss_dssp EEEEETTEEEEEEEEEE--------SSSEEEEEECCTTCCG--GGGTTHHHHHHHHTEEEEEECCTTSTTSCCCS-----
T ss_pred eecccccCCeEEEEEEe--------CCCCEEEEECCCCCcH--HHHHHHHHHHHHCCcEEEEECCCCCCCCCCCC-----
Confidence 45567889988774321 2358999999987643 45777888898999999999999999764321
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCcccccccccCCCCCC-Ch-
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPFLDATNTLLYPILPL-IA- 623 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~d~~~~~~~~~~~~-~~- 623 (726)
...+++++.+.+..+++. ++.+++.++|+|+||.+++.++.++ |++++++|+.+|+.............. ..
T Consensus 70 ---~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~~ 144 (456)
T 3vdx_A 70 ---TGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQE 144 (456)
T ss_dssp ---SCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBCHH
T ss_pred ---CCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccchHH
Confidence 224566666666655543 3557999999999999888887776 999999999998775432110000000 00
Q ss_pred ------------------hhhcc-cCC------CCChhHHHHHH------------------hcCcccccccCCCCCeEE
Q 004866 624 ------------------ADYEE-FGY------PGDIDDFHAIR------------------NYSPYDNIQKDVLYPAVL 660 (726)
Q Consensus 624 ------------------~~~~~-~g~------~~~~~~~~~~~------------------~~sp~~~i~~~~~~P~ll 660 (726)
..... +.. ....+....+. ..+....+.+ ++.|+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-i~~PvLi 223 (456)
T 3vdx_A 145 FFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPR-IDVPALI 223 (456)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTT-CCSCCEE
T ss_pred HHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhh-CCCCEEE
Confidence 00000 000 11111111110 0122233444 7899999
Q ss_pred EEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 661 VTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 661 i~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
|+|..|..||+.+..+.++++... ..+.+++++||.... .........+.+||.+.+
T Consensus 224 I~G~~D~~vp~~~~~~~l~~~~~~------~~~~~i~gagH~~~~-e~p~~v~~~I~~FL~~~l 280 (456)
T 3vdx_A 224 LHGTGDRTLPIENTARVFHKALPS------AEYVEVEGAPHGLLW-THAEEVNTALLAFLAKAL 280 (456)
T ss_dssp EEETTCSSSCGGGTHHHHHHHCTT------SEEEEETTCCSCTTT-TTHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCHHHHHHHHHHHCCC------ceEEEeCCCCCcchh-hCHHHHHHHHHHHHHHhh
Confidence 999999999998444444333211 122237999997533 222333445678887765
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=145.69 Aligned_cols=221 Identities=14% Similarity=0.053 Sum_probs=134.6
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
+.||.+|.+... + +.|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+... ...
T Consensus 9 ~~~g~~l~y~~~---g-----~g~pvvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~--------~~~ 70 (277)
T 1brt_A 9 NSTSIDLYYEDH---G-----TGQPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQP--------TTG 70 (277)
T ss_dssp TTEEEEEEEEEE---C-----SSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------SSC
T ss_pred cCCCcEEEEEEc---C-----CCCeEEEECCCCCcH--HHHHHHHHHHhhCCCEEEEeCCCCCCCCCCC--------CCC
Confidence 567777764332 2 123488999976643 5688888999999999999999999976432 122
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC-ceeEEEEeCCccccccc-ccCCC--CCCC-----
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVPFLDATNT-LLYPI--LPLI----- 622 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~~d~~~~-~~~~~--~~~~----- 622 (726)
.+++++.+.+..++++ .+.+++.++||||||.+++.++.++|+ +++++|+.+|....... ..... .+..
T Consensus 71 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (277)
T 1brt_A 71 YDYDTFAADLNTVLET--LDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGI 148 (277)
T ss_dssp CSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHH
Confidence 4666666666666543 234689999999999999999999999 99999998875432110 00000 0000
Q ss_pred --------hhhhc-----ccC------CCCChhHHHHHH------------------hcCcccccccCCCCCeEEEEecC
Q 004866 623 --------AADYE-----EFG------YPGDIDDFHAIR------------------NYSPYDNIQKDVLYPAVLVTSSF 665 (726)
Q Consensus 623 --------~~~~~-----~~g------~~~~~~~~~~~~------------------~~sp~~~i~~~~~~P~lli~g~~ 665 (726)
..... .++ ....++..+.+. ..+....+.+ ++.|+|+|+|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~ 227 (277)
T 1brt_A 149 VAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPR-IDVPALILHGTG 227 (277)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGG-CCSCEEEEEETT
T ss_pred HHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhccc-CCCCeEEEecCC
Confidence 00000 011 111222211111 1112223444 889999999999
Q ss_pred CCCcChHHH-HHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 666 NTRFGVWEA-AKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 666 D~~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
|..+|+..+ .++.+.+... + +.+++++||...- ++..+....+.+||.
T Consensus 228 D~~~~~~~~~~~~~~~~~~~------~-~~~i~~~gH~~~~-e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 228 DRTLPIENTARVFHKALPSA------E-YVEVEGAPHGLLW-THAEEVNTALLAFLA 276 (277)
T ss_dssp CSSSCGGGTHHHHHHHCTTS------E-EEEETTCCTTHHH-HTHHHHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHHCCCC------c-EEEeCCCCcchhh-hCHHHHHHHHHHHHh
Confidence 999999887 7777666432 2 2237999996322 222223334567764
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-15 Score=153.59 Aligned_cols=201 Identities=10% Similarity=0.039 Sum_probs=133.3
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-------HHHHHHHHCCcEEEEEccCCCCCCCCcccccc----
Q 004866 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-------SELKSLLDRGWVVAFADVRGGGGGGKKWHHDG---- 545 (726)
Q Consensus 477 ~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-------~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~---- 545 (726)
.+.+.++.|.+. +.|.||++||+.... ..|. .....|+++||.|+.+|+||+|.++..-....
T Consensus 49 ~~~~~~~~p~~~----~~~~vvl~HG~g~~~--~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~ 122 (328)
T 1qlw_A 49 QMYVRYQIPQRA----KRYPITLIHGCCLTG--MTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 122 (328)
T ss_dssp CEEEEEEEETTC----CSSCEEEECCTTCCG--GGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred eEEEEEEccCCC----CCccEEEEeCCCCCC--CccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccc
Confidence 345555556531 236789999975432 3455 36788999999999999999997654311100
Q ss_pred ------------------------cc-cC---------CCCcHHH------------------HHHHHHHHHHcCCCCCC
Q 004866 546 ------------------------RR-TK---------KLNSIKD------------------FISCARFLIEKEIVKEH 573 (726)
Q Consensus 546 ------------------------~~-~~---------~~~~~~D------------------~~~~~~~l~~~~~~d~~ 573 (726)
.+ .+ ....+++ +.+++..++++- +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~ 198 (328)
T 1qlw_A 123 GKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----D 198 (328)
T ss_dssp TSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----T
T ss_pred cccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----C
Confidence 00 00 0001333 555666666542 3
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccC
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD 653 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~ 653 (726)
++.++|||+||.+++.++.++|++++++|+..|... . ++ ..+.+.
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~---------------------~-------------~~-~~~~~~ 243 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC---------------------P-------------KP-EDVKPL 243 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC---------------------C-------------CG-GGCGGG
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC---------------------C-------------CH-HHHhhc
Confidence 899999999999999999999999999999887530 0 00 111122
Q ss_pred CCCCeEEEEecCCCCcCh-----HHHHHHHHHHHhcCCCCCCCcEEEEcCCC-----CCCCchhhHHHHHHHHHHHHHHh
Q 004866 654 VLYPAVLVTSSFNTRFGV-----WEAAKWVARVRESTIYDPKRPILLNLTTD-----IVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 654 ~~~P~lli~g~~D~~V~~-----~~~~~~~~~L~~~~~~~~~~~~~~~~~~g-----H~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
++.|+|+++|+.|..+|+ .++.++++++++++.+ ..++.++++| |......+..+....+.+||.++
T Consensus 244 ~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~ 320 (328)
T 1qlw_A 244 TSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGK---GQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 320 (328)
T ss_dssp TTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCC---EEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHhCCC---ceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhc
Confidence 568999999999999996 8999999999987743 2232367555 97544222344455678999887
Q ss_pred hc
Q 004866 724 ME 725 (726)
Q Consensus 724 l~ 725 (726)
+.
T Consensus 321 ~~ 322 (328)
T 1qlw_A 321 TA 322 (328)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=144.24 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=88.8
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+.+.||.+|.+...-|+ +.|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+... .
T Consensus 3 ~~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~--------~ 66 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPR------DGLPVVFHHGWPLSA--DDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP--------S 66 (275)
T ss_dssp EECTTSCEEEEEEESCT------TSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------S
T ss_pred EEccCCCEEEEEEcCCC------CCceEEEECCCCCch--hhHHHHHHHHHHCCceEEEEcCCcCCCCCCC--------C
Confidence 56789988875443221 236799999976543 4688888899999999999999999976432 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCcc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPFL 608 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~ 608 (726)
...+++++.+.+..++++ .+.+++.++||||||.+++.++.++ |++++++|+.++..
T Consensus 67 ~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 124 (275)
T 1a88_A 67 TGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVP 124 (275)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCC
T ss_pred CCCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCC
Confidence 124566666665555543 2336899999999999998866666 99999999988643
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=145.55 Aligned_cols=121 Identities=20% Similarity=0.261 Sum_probs=89.5
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+.+.||.+|.+...-|+ ..|.||++||..+.. ..|...+..|+++||.|+++|+||+|.+....
T Consensus 4 ~~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~~--~~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~~-------- 67 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPR------DAPVIHFHHGWPLSA--DDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVW-------- 67 (276)
T ss_dssp EECTTSCEEEEEEESCT------TSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS--------
T ss_pred EECCCCcEEEEEecCCC------CCCeEEEECCCCcch--hHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC--------
Confidence 56779988876443221 236799999976543 46888889999999999999999999874321
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCcc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPFL 608 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~ 608 (726)
...+++++.+.+..++++ .+.+++.++||||||.+++.++.++ |++++++|+.++..
T Consensus 68 ~~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 125 (276)
T 1zoi_A 68 DGHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVP 125 (276)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCC
Confidence 124566666666555543 2346899999999999998877666 99999999988643
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=145.57 Aligned_cols=211 Identities=15% Similarity=0.059 Sum_probs=133.5
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|+||++||..+.. ..|......|+++||.|+.+|+||+|.+... .....+++++.+.+..++++-.. .++
T Consensus 5 ~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHGA--WIWYKLKPLLESAGHRVTAVELAASGIDPRP-------IQAVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSSC-------GGGCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCcc--ccHHHHHHHHHhCCCEEEEecCCCCcCCCCC-------CCccccHHHhHHHHHHHHHHhcc-cCc
Confidence 8999999987643 4578888999999999999999999976432 11225777777777777665321 379
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC--------CCCCCC--------------------hhhh
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY--------PILPLI--------------------AADY 626 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~--------~~~~~~--------------------~~~~ 626 (726)
+.++|||+||.+++.++.++|++++++|+.+|.......... ....+. ....
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 999999999999999999999999999998885432211000 000000 0000
Q ss_pred cc-cCCCCChhHHHHHHh-c-------------CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCC
Q 004866 627 EE-FGYPGDIDDFHAIRN-Y-------------SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 627 ~~-~g~~~~~~~~~~~~~-~-------------sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 691 (726)
.. +......+....+.. . .+...... .+.|+++|+|+.|..+|+..+.++++.+... +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~------~ 227 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGY-GSVQRVYVMSSEDKAIPCDFIRWMIDNFNVS------K 227 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTG-GGSCEEEEEETTCSSSCHHHHHHHHHHSCCS------C
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhcccccccccc-ccCCEEEEECCCCeeeCHHHHHHHHHhCCcc------c
Confidence 00 001111111111111 1 22222221 3689999999999999999998888877542 2
Q ss_pred cEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 692 PILLNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
+.+++++||...- ++.........+|+.++|
T Consensus 228 -~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 228 -VYEIDGGDHMVML-SKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp -EEEETTCCSCHHH-HSHHHHHHHHHHHHHHTC
T ss_pred -EEEcCCCCCchhh-cChHHHHHHHHHHHHHhC
Confidence 2337899996322 222233344568887764
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=150.51 Aligned_cols=219 Identities=16% Similarity=0.043 Sum_probs=138.6
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|..+.+... ++.|+||++||..+.. ..|......|++ ||.|+.+|+||+|.+.. .....
T Consensus 55 ~~~~~~~~~~~--------g~~p~vv~lhG~~~~~--~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~--------~~~~~ 115 (314)
T 3kxp_A 55 IGRITLNVREK--------GSGPLMLFFHGITSNS--AVFEPLMIRLSD-RFTTIAVDQRGHGLSDK--------PETGY 115 (314)
T ss_dssp CSSCEEEEEEE--------CCSSEEEEECCTTCCG--GGGHHHHHTTTT-TSEEEEECCTTSTTSCC--------CSSCC
T ss_pred ECCEEEEEEec--------CCCCEEEEECCCCCCH--HHHHHHHHHHHc-CCeEEEEeCCCcCCCCC--------CCCCC
Confidence 47777775432 1258999999976543 457766777766 79999999999987641 12335
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc-------cCCCCC-C-Ch
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL-------LYPILP-L-IA 623 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-------~~~~~~-~-~~ 623 (726)
+++|+.+.+..++++ .+.++++++|+|+||.+++.++.++|++++++|+.+|...+.... ...... . ..
T Consensus 116 ~~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (314)
T 3kxp_A 116 EANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDI 193 (314)
T ss_dssp SHHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSH
T ss_pred CHHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCH
Confidence 778888877777764 234799999999999999999999999999999998865432210 000000 0 00
Q ss_pred h----hhcccCCCCChhHHHHHHh---------------------------cCcccccccCCCCCeEEEEecCCCCcChH
Q 004866 624 A----DYEEFGYPGDIDDFHAIRN---------------------------YSPYDNIQKDVLYPAVLVTSSFNTRFGVW 672 (726)
Q Consensus 624 ~----~~~~~g~~~~~~~~~~~~~---------------------------~sp~~~i~~~~~~P~lli~g~~D~~V~~~ 672 (726)
. .+.........+....+.. .+....+.+ ++.|+|+++|+.|..+|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~Lii~G~~D~~~~~~ 272 (314)
T 3kxp_A 194 KAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRD-VTKPVLIVRGESSKLVSAA 272 (314)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHH-CCSCEEEEEETTCSSSCHH
T ss_pred HHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhc-CCCCEEEEecCCCccCCHH
Confidence 0 0000000001111111111 033333444 7899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 673 EAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 673 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
.+.++++.+... .+..++++||.... ++.......+.+||.
T Consensus 273 ~~~~~~~~~~~~-------~~~~~~g~gH~~~~-e~~~~~~~~i~~fl~ 313 (314)
T 3kxp_A 273 ALAKTSRLRPDL-------PVVVVPGADHYVNE-VSPEITLKAITNFID 313 (314)
T ss_dssp HHHHHHHHCTTS-------CEEEETTCCSCHHH-HCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-------eEEEcCCCCCcchh-hCHHHHHHHHHHHHh
Confidence 999998887442 23337999997422 222233445567775
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=160.64 Aligned_cols=223 Identities=11% Similarity=-0.064 Sum_probs=142.5
Q ss_pred ceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcE----EEEEccCCCCCC
Q 004866 463 YSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWV----VAFADVRGGGGG 537 (726)
Q Consensus 463 ~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~----v~~~d~RG~g~~ 537 (726)
.+.+.+++.|. .|..++++|+.|++.. ++++|+|+++||+.... ...+......|+++|++ |+.+|++|++..
T Consensus 166 G~v~~~~~~S~~~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~-~~~~~~~~~~l~~~g~~~p~iVV~~d~~~~~~r 243 (403)
T 3c8d_A 166 IPAKEIIWKSERLKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQ-SMPVWPVLTSLTHRQQLPPAVYVLIDAIDTTHR 243 (403)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEC------CCCCEEEESSHHHHHH-TSCCHHHHHHHHHTTSSCSCEEEEECCCSHHHH
T ss_pred CceEEEEEEccccCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhh-cCcHHHHHHHHHHcCCCCCeEEEEECCCCCccc
Confidence 45667777764 6788999999998753 56799999999952211 11234567788888875 999999873211
Q ss_pred CCcccccccccCCCCcHHHHH--HHHHHHHHc-C-CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFI--SCARFLIEK-E-IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT 613 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~-~-~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 613 (726)
...+ .....+.|++ +++.++.++ + ..|+++++|+|+||||++++.++.++|++|+++++.+|.+++...
T Consensus 244 ~~~~-------~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~ 316 (403)
T 3c8d_A 244 AHEL-------PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 316 (403)
T ss_dssp HHHS-------SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCT
T ss_pred cccC-------CChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCC
Confidence 1111 0122455543 456666654 2 358899999999999999999999999999999999998764321
Q ss_pred ccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcE
Q 004866 614 LLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPI 693 (726)
Q Consensus 614 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 693 (726)
+.+......+.+.. .+ ... ...|++|++|..|+.+ ..++.+++++|+++|++ +
T Consensus 317 ----------------~~~~~~~~~~~~~~-~~---~~~-~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~-----v 369 (403)
T 3c8d_A 317 ----------------GGQQEGVLLEKLKA-GE---VSA-EGLRIVLEAGIREPMI-MRANQALYAQLHPIKES-----I 369 (403)
T ss_dssp ----------------TSSSCCHHHHHHHT-TS---SCC-CSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTS-----E
T ss_pred ----------------CCCcHHHHHHHHHh-cc---ccC-CCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCC-----E
Confidence 00111112222322 11 122 4556667777777543 68999999999999853 3
Q ss_pred EE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 694 LL--NLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 694 ~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.+ +++ ||.... ......+.+.||.+.+.
T Consensus 370 ~~~~~~G-gH~~~~---w~~~l~~~l~~l~~~~~ 399 (403)
T 3c8d_A 370 FWRQVDG-GHDALC---WRGGLMQGLIDLWQPLF 399 (403)
T ss_dssp EEEEESC-CSCHHH---HHHHHHHHHHHHHGGGT
T ss_pred EEEEeCC-CCCHHH---HHHHHHHHHHHHhcccc
Confidence 33 677 796322 12344566788887654
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=149.02 Aligned_cols=222 Identities=12% Similarity=0.037 Sum_probs=140.3
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCc
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNS 553 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~ 553 (726)
+|.+|.+... ++.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+... ....+
T Consensus 17 ~g~~l~~~~~--------g~~~~vv~~HG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~--------~~~~~ 78 (309)
T 3u1t_A 17 EGATIAYVDE--------GSGQPVLFLHGNPTSS--YLWRNIIPYVVAAGYRAVAPDLIGMGDSAKP--------DIEYR 78 (309)
T ss_dssp TTEEEEEEEE--------ECSSEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCCC--------SSCCC
T ss_pred CCeEEEEEEc--------CCCCEEEEECCCcchh--hhHHHHHHHHHhCCCEEEEEccCCCCCCCCC--------CcccC
Confidence 7888775432 1257899999976543 4577778888899999999999999976432 12357
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc-----------------ccC
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT-----------------LLY 616 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-----------------~~~ 616 (726)
++|+.+.+..+++. ...+++.|+|||+||++++.++.++|++++++|+.+|....... +..
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
T 3u1t_A 79 LQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRT 156 (309)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHhc
Confidence 78887777777754 23478999999999999999999999999999998876543200 000
Q ss_pred CCC--------C-CChhhhcc--cCCCCChhHHHHHHhc-----------------C--------------cccccccCC
Q 004866 617 PIL--------P-LIAADYEE--FGYPGDIDDFHAIRNY-----------------S--------------PYDNIQKDV 654 (726)
Q Consensus 617 ~~~--------~-~~~~~~~~--~g~~~~~~~~~~~~~~-----------------s--------------p~~~i~~~~ 654 (726)
... . ........ .......+..+.+... . ....+.+ +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i 235 (309)
T 3u1t_A 157 ADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMA-S 235 (309)
T ss_dssp TTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH-C
T ss_pred cchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhccc-C
Confidence 000 0 00000000 0011111111111111 0 0011233 6
Q ss_pred CCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 655 LYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 655 ~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
+.|+|+|+|+.|..+|+..+.++++.+.... .+. .+++||.... .........+.+||.+..
T Consensus 236 ~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~------~~~-~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 297 (309)
T 3u1t_A 236 PIPKLLFHAEPGALAPKPVVDYLSENVPNLE------VRF-VGAGTHFLQE-DHPHLIGQGIADWLRRNK 297 (309)
T ss_dssp CSCEEEEEEEECSSSCHHHHHHHHHHSTTEE------EEE-EEEESSCHHH-HCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHhhCCCCE------EEE-ecCCcccchh-hCHHHHHHHHHHHHHhcc
Confidence 8899999999999999998888888775432 233 5899995322 222333444678988765
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=162.72 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=95.5
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH 543 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 543 (726)
..+..++...||.+|++... ++.|+||++||+.+.. ..|......|+++||.|+.+|+||+|.+...
T Consensus 236 ~~~~~~~~~~dg~~l~~~~~--------g~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~D~~G~G~S~~~--- 302 (555)
T 3i28_A 236 DMSHGYVTVKPRVRLHFVEL--------GSGPAVCLCHGFPESW--YSWRYQIPALAQAGYRVLAMDMKGYGESSAP--- 302 (555)
T ss_dssp GSEEEEEEEETTEEEEEEEE--------CSSSEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTSCCC---
T ss_pred ccceeEEEeCCCcEEEEEEc--------CCCCEEEEEeCCCCch--hHHHHHHHHHHhCCCEEEEecCCCCCCCCCC---
Confidence 44556677789998875432 2358999999987643 4677888899999999999999999976432
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.......++++.+.+..+++. .+.+++.++|||+||.+++.++.++|++++++|+.+|..
T Consensus 303 ---~~~~~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 362 (555)
T 3i28_A 303 ---PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF 362 (555)
T ss_dssp ---SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred ---CCcccccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCC
Confidence 111223466666655555543 244699999999999999999999999999999887754
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-14 Score=143.49 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=85.6
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
..+.+|.+|.+... ++.|.||++||.++.. ..|......|+++||.|+.+|+||+|.+....
T Consensus 11 ~~~~~g~~l~y~~~--------G~g~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------- 72 (281)
T 3fob_A 11 TENQAPIEIYYEDH--------GTGKPVVLIHGWPLSG--RSWEYQVPALVEAGYRVITYDRRGFGKSSQPW-------- 72 (281)
T ss_dssp EETTEEEEEEEEEE--------SSSEEEEEECCTTCCG--GGGTTTHHHHHHTTEEEEEECCTTSTTSCCCS--------
T ss_pred CCCCCceEEEEEEC--------CCCCeEEEECCCCCcH--HHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc--------
Confidence 34667777664321 1235688899987643 46777788899999999999999999764321
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHc-CCCceeEEEEeCCc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC-CPDLFRAVVLEVPF 607 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~ 607 (726)
...+++++.+.+..+++.- ..+++.++||||||.+++.++.. .|++++++|+..+.
T Consensus 73 ~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~ 129 (281)
T 3fob_A 73 EGYEYDTFTSDLHQLLEQL--ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAV 129 (281)
T ss_dssp SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred cccCHHHHHHHHHHHHHHc--CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCC
Confidence 2246777777777666542 34689999999999877665544 58999999988765
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-14 Score=151.21 Aligned_cols=245 Identities=12% Similarity=0.011 Sum_probs=151.8
Q ss_pred CceEEEEEEECC--CCcE--EEEEEEEcCCCCCCCCccEEEEEcCCCCC--CCCccc----------------h-HHHHH
Q 004866 462 FYSCEQYDVPSH--DGIS--VPLTIIYSPKYKKENQNPGLLHGHGAYGE--LLDKRW----------------R-SELKS 518 (726)
Q Consensus 462 ~~~~~~~~~~s~--dG~~--i~~~l~~p~~~~~~~~~P~vl~~hGg~~~--~~~~~~----------------~-~~~~~ 518 (726)
.....++.|.|. +|.. +.+.|+.|++.. .+.|+|.|.||-.+. ...+++ . ..+..
T Consensus 72 ~~~a~ri~Y~std~~G~p~~~~gtv~~P~~~~--~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~ 149 (462)
T 3guu_A 72 NAASFQLQYRTTNTQNEAVADVATVWIPAKPA--SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIG 149 (462)
T ss_dssp TCEEEEEEEEEECTTSCEEEEEEEEEECSSCC--SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHH
T ss_pred CceEEEEEEEEECCCCCEEEEEEEEEecCCCC--CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHH
Confidence 346777777765 4555 567899998743 358999999995442 222322 1 23566
Q ss_pred H-HHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC---
Q 004866 519 L-LDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC--- 594 (726)
Q Consensus 519 l-~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~--- 594 (726)
| +++||+|+++|++|.|. .|... ... ...+.|.+.++..+. +.-...|++++|+|+||..+++++...
T Consensus 150 ~~l~~G~~Vv~~Dy~G~G~---~y~~~-~~~--~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~y 221 (462)
T 3guu_A 150 WALQQGYYVVSSDHEGFKA---AFIAG-YEE--GMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAESY 221 (462)
T ss_dssp HHHHTTCEEEEECTTTTTT---CTTCH-HHH--HHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEEecCCCCCC---cccCC-cch--hHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChhh
Confidence 7 99999999999999885 22211 000 112345444444443 333358999999999999999887754
Q ss_pred -CC-ceeEEEEeCCccccccccc--CCCC----------------C---------CC----------------hh-----
Q 004866 595 -PD-LFRAVVLEVPFLDATNTLL--YPIL----------------P---------LI----------------AA----- 624 (726)
Q Consensus 595 -p~-~f~a~v~~~p~~d~~~~~~--~~~~----------------~---------~~----------------~~----- 624 (726)
|+ .++++++.++..|+...+. +... | +. ..
T Consensus 222 apel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~ 301 (462)
T 3guu_A 222 APELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLT 301 (462)
T ss_dssp CTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred cCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHh
Confidence 45 4889999998887654211 0000 0 00 00
Q ss_pred ----hhccc--C-CC-CChhHHHHHHhcCccc----ccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCc
Q 004866 625 ----DYEEF--G-YP-GDIDDFHAIRNYSPYD----NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRP 692 (726)
Q Consensus 625 ----~~~~~--g-~~-~~~~~~~~~~~~sp~~----~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 692 (726)
....+ | ++ .++...+.+.+.+.-. +-....+.|++++||..|..||+.++.+++++++++|. .
T Consensus 302 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~-----~ 376 (462)
T 3guu_A 302 YPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGA-----N 376 (462)
T ss_dssp CTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTC-----E
T ss_pred hccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCC-----C
Confidence 00000 1 01 0122333344433211 00112678999999999999999999999999999884 3
Q ss_pred EEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 693 ILL--NLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 693 ~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+.+ +++++|+... .....+.++||.++|.
T Consensus 377 V~~~~y~~~~H~~~~----~~~~~d~l~WL~~r~~ 407 (462)
T 3guu_A 377 INFSPYPIAEHLTAE----IFGLVPSLWFIKQAFD 407 (462)
T ss_dssp EEEEEESSCCHHHHH----HHTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCccCch----hhhHHHHHHHHHHHhC
Confidence 444 8899996322 2346678899998873
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-13 Score=142.90 Aligned_cols=205 Identities=13% Similarity=0.093 Sum_probs=142.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||+....+. ..|+++|+++|+...+.. ......++|||||+.|+|+.... ....||++++.+
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~--~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~--g~~~i~~~d~~~ 256 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--GSLNLYVMDLAS 256 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSS--CEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTT
T ss_pred ceeeEEcCCCCEEEEEEecCCC--cEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC--CCceEEEEECCC
Confidence 5678899999999999755442 579999999998766543 34567899999999999986432 235799999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t~~ 281 (726)
++... +.. . ......+.|||||++|++.+.......||++|+.++ +.+.+...... ....++++|+.|++.+..
T Consensus 257 ~~~~~-l~~-~-~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 257 GQIRQ-VTD-G-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp CCEEE-CCC-C-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred CCEEe-CcC-C-CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC--CEEEEecCCCcccCeEECCCCCEEEEEECc
Confidence 65322 221 1 223456899999999999987666779999999873 44555433222 235678999999888765
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
++ ...|+.++++ . .....+..+ ....-..+.+.++.|++....++...|+++++++
T Consensus 332 ~g------~~~i~~~d~~-~---~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 332 GG------QQHIAKQDLA-T---GGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp SS------CEEEEEEETT-T---CCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred CC------ceEEEEEECC-C---CCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 43 3678888876 2 333433322 2222223444567788888888888999999864
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=144.38 Aligned_cols=222 Identities=15% Similarity=0.102 Sum_probs=133.5
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
+|.+|.+... ++.|+||++||..+.. ..|......|++ +||.|+.+|+||+|.+...-. .
T Consensus 9 ~g~~l~y~~~--------g~~~~vv~lhG~~~~~--~~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~~---------~ 69 (272)
T 3fsg_A 9 TRSNISYFSI--------GSGTPIIFLHGLSLDK--QSTCLFFEPLSNVGQYQRIYLDLPGMGNSDPISP---------S 69 (272)
T ss_dssp CTTCCEEEEE--------CCSSEEEEECCTTCCH--HHHHHHHTTSTTSTTSEEEEECCTTSTTCCCCSS---------C
T ss_pred cCCeEEEEEc--------CCCCeEEEEeCCCCcH--HHHHHHHHHHhccCceEEEEecCCCCCCCCCCCC---------C
Confidence 6777764321 2347899999976533 346666666776 799999999999997533211 4
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC-CCC------C----C
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY-PIL------P----L 621 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-~~~------~----~ 621 (726)
+++++.+.+..++++- .+.+++.++|+|+||.+++.++.++|++++++|+.+|.......... ... . +
T Consensus 70 ~~~~~~~~~~~~l~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (272)
T 3fsg_A 70 TSDNVLETLIEAIEEI-IGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVE 148 (272)
T ss_dssp SHHHHHHHHHHHHHHH-HTTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCT
T ss_pred CHHHHHHHHHHHHHHH-hCCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhccc
Confidence 5666666665555431 24478999999999999999999999999999999887633211000 000 0 0
Q ss_pred Ch---hhhcccCCCCChhHHH-------------------HHHhcCcc-----cccccCCCCCeEEEEecCCCCcChHHH
Q 004866 622 IA---ADYEEFGYPGDIDDFH-------------------AIRNYSPY-----DNIQKDVLYPAVLVTSSFNTRFGVWEA 674 (726)
Q Consensus 622 ~~---~~~~~~g~~~~~~~~~-------------------~~~~~sp~-----~~i~~~~~~P~lli~g~~D~~V~~~~~ 674 (726)
.. ..+........+...+ .+.....+ ..+.+ ++.|+|+++|+.|..||+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~ 227 (272)
T 3fsg_A 149 NKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNIN-YQFPFKIMVGRNDQVVGYQEQ 227 (272)
T ss_dssp TGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCC-CSSCEEEEEETTCTTTCSHHH
T ss_pred CHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhcc-CCCCEEEEEeCCCCcCCHHHH
Confidence 00 0000000000001111 11111111 12233 789999999999999999998
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 675 AKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 675 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
.++.+.+... .+..++++||.... ++.........+||.+..
T Consensus 228 ~~~~~~~~~~-------~~~~~~~~gH~~~~-~~~~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 228 LKLINHNENG-------EIVLLNRTGHNLMI-DQREAVGFHFDLFLDELN 269 (272)
T ss_dssp HHHHTTCTTE-------EEEEESSCCSSHHH-HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-------eEEEecCCCCCchh-cCHHHHHHHHHHHHHHhh
Confidence 8887666421 22237899996432 222333345678887653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-13 Score=144.69 Aligned_cols=264 Identities=9% Similarity=0.036 Sum_probs=163.9
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc--ccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV--RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~--~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
..++|||||++|||..+..|. .+|+++|+++|+..+++... ....+.|||||+.|+|...+ ..||++++.+
T Consensus 39 ~~~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~ 111 (388)
T 3pe7_A 39 YQKCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDLAT 111 (388)
T ss_dssp TSCCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-----TEEEEEETTT
T ss_pred cCccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-----CeEEEEECCC
Confidence 347899999999999875553 57999999999988876522 22367999999999998632 4799999988
Q ss_pred CCceeEEeeecCCceE--EEEEEcCCCcEEEEEEc-------------------CCCceEEEEEeCCCCCCCeEEeeccC
Q 004866 203 TDEDALLLEESNENVY--VNIRHTKDFHFVCVHTF-------------------STTSSKVFLINAADPFSGLTLIWECE 261 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~--~~~~~s~Dg~~l~~~~~-------------------~~~~~~l~~~d~~~~~~~~~~l~~~~ 261 (726)
++.. .++..+.. +. .....++||+.|+.... ......||++|+.+ ++.+.+....
T Consensus 112 g~~~-~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~l~~~~ 187 (388)
T 3pe7_A 112 LEEN-VVYQVPAE-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT--GESTVILQEN 187 (388)
T ss_dssp CCEE-EEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT--CCEEEEEEES
T ss_pred Ccce-eeeechhh-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC--CceEEeecCC
Confidence 7533 34433322 22 22335999999875432 12237899999988 4566665544
Q ss_pred Cc-eEEeeee-cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE--EeeeCCEEEEEEEeCC
Q 004866 262 GL-AHCIVEH-HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGR 337 (726)
Q Consensus 262 ~~-~~~~~~~-~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g 337 (726)
.. ....++| ||+.|++.++..... ...+|+.++.+ . ...+.+........+.. +++.++.|++....++
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~---~~~~l~~~d~~-~---~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDL---VDARMWLINED-G---TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTT---SSCSEEEEETT-S---CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred ccccccEECCCCCCEEEEEEecCCCC---CcceEEEEeCC-C---CceEEeeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 32 3456789 999999888743211 13568888876 2 33344433322223333 4445677888777777
Q ss_pred ee--EEEEEecCCCCCCcceeecccccccccCCCceeee--ecCCCCcCCCcEEEEEEcc-----CCCCceEEEEECCCC
Q 004866 338 TY--RLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQI--VPGPNYDYYSSTMRFAISS-----PVMPDAVVDYDLSYG 408 (726)
Q Consensus 338 ~~--~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~ss-----~~~P~~~~~~d~~~~ 408 (726)
.. .|+++|+.+++ ...+ ..++...... ..+..+++|+..++++.+. ......||.+|+.++
T Consensus 261 ~~~~~l~~~d~~~g~---~~~l-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 261 SPDRFIYSADPETLE---NRQL-------TSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CCCEEEEEECTTTCC---EEEE-------EEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCcceEEEEecCCCc---eEEE-------EcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 65 49999987643 1111 1122210000 0112345677777765532 245679999999999
Q ss_pred eEEEEEee
Q 004866 409 KWNIIQQQ 416 (726)
Q Consensus 409 ~~~~~~~~ 416 (726)
+.+.+...
T Consensus 331 ~~~~l~~~ 338 (388)
T 3pe7_A 331 TQHRVARH 338 (388)
T ss_dssp EEEEEEEC
T ss_pred ceEEeccc
Confidence 88777643
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=147.90 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=128.9
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.++.+.. . ++.|+||++||..+.. ..|......|++ ||.|+.+|+||+|.+... ......
T Consensus 10 ~~~~~~~y~~---~-----g~~~~vv~~HG~~~~~--~~~~~~~~~L~~-~~~vi~~d~~G~G~s~~~------~~~~~~ 72 (278)
T 3oos_A 10 TPRGKFEYFL---K-----GEGPPLCVTHLYSEYN--DNGNTFANPFTD-HYSVYLVNLKGCGNSDSA------KNDSEY 72 (278)
T ss_dssp ETTEEEEEEE---E-----CSSSEEEECCSSEECC--TTCCTTTGGGGG-TSEEEEECCTTSTTSCCC------SSGGGG
T ss_pred cCCceEEEEe---c-----CCCCeEEEEcCCCcch--HHHHHHHHHhhc-CceEEEEcCCCCCCCCCC------CCcccC
Confidence 3566766432 1 2347899999976543 235556666766 999999999999976332 111234
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCC-----CCCCh---h
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPI-----LPLIA---A 624 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~-----~~~~~---~ 624 (726)
+++|+.+.+..++++ .+.+++.++|||+||.+++.++.++|++++++|+.+|............ .+... .
T Consensus 73 ~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
T 3oos_A 73 SMTETIKDLEAIREA--LYINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVS 150 (278)
T ss_dssp SHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHH
T ss_pred cHHHHHHHHHHHHHH--hCCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHH
Confidence 678888777777765 2446899999999999999999999999999999999876211000000 00000 0
Q ss_pred -------------------------------hhcc-cCCCC----ChhHHHHHH-----hcCcccccccCCCCCeEEEEe
Q 004866 625 -------------------------------DYEE-FGYPG----DIDDFHAIR-----NYSPYDNIQKDVLYPAVLVTS 663 (726)
Q Consensus 625 -------------------------------~~~~-~g~~~----~~~~~~~~~-----~~sp~~~i~~~~~~P~lli~g 663 (726)
.+.. +..+. .......+. ..+....+.+ ++.|+|+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~l~i~g 229 (278)
T 3oos_A 151 IMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKF-VKIPSFIYCG 229 (278)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTT-CCSCEEEEEE
T ss_pred HHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhC-CCCCEEEEEe
Confidence 0000 00110 001112222 2223334444 7899999999
Q ss_pred cCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCC
Q 004866 664 SFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 703 (726)
Q Consensus 664 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 703 (726)
+.|..+|+..+.++++.+... .+..++++||..
T Consensus 230 ~~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~gH~~ 262 (278)
T 3oos_A 230 KHDVQCPYIFSCEIANLIPNA-------TLTKFEESNHNP 262 (278)
T ss_dssp TTCSSSCHHHHHHHHHHSTTE-------EEEEETTCSSCH
T ss_pred ccCCCCCHHHHHHHHhhCCCc-------EEEEcCCcCCCc
Confidence 999999999999988877432 222378999964
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=153.29 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=93.8
Q ss_pred EEEEEEECCCCcEEEEEEEEcCC-CCCCCCccEEEEEcCCCCCCCC----------c-cchHHH---HHHHHCCcEEEEE
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPK-YKKENQNPGLLHGHGAYGELLD----------K-RWRSEL---KSLLDRGWVVAFA 529 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~-~~~~~~~P~vl~~hGg~~~~~~----------~-~~~~~~---~~l~~~G~~v~~~ 529 (726)
.+...++..+|..|...|.|..- .....+.|+||++||..+.... . .|...+ ..|+++||.|+++
T Consensus 12 ~~~~~~~~~~g~~l~~~i~y~~~g~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~ 91 (377)
T 3i1i_A 12 FILKEYTFENGRTIPVQMGYETYGTLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICT 91 (377)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEESCCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEE
T ss_pred EeecceeecCCCEeeeeEEEEeecccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEe
Confidence 44456778899877444444321 1112346899999997665322 1 144444 5677889999999
Q ss_pred ccCCCCCCC-----Ccccccccc--------cCCCCcHHHHHHHHHHHHHcCCCCCCcEE-EEEecccHHHHHHHHHcCC
Q 004866 530 DVRGGGGGG-----KKWHHDGRR--------TKKLNSIKDFISCARFLIEKEIVKEHKLA-GWGYSAGGLLVAAAINCCP 595 (726)
Q Consensus 530 d~RG~g~~g-----~~~~~~~~~--------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~l~~~~~~~~p 595 (726)
|.||+|.+. ..-...... .....+++|+.+.+..++++ ...+++. |+||||||.+++.++.++|
T Consensus 92 D~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p 169 (377)
T 3i1i_A 92 DNLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYP 169 (377)
T ss_dssp CCTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCT
T ss_pred cccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHCh
Confidence 999886421 100000000 01134789999888888865 3446786 9999999999999999999
Q ss_pred CceeEEEE-eCCcc
Q 004866 596 DLFRAVVL-EVPFL 608 (726)
Q Consensus 596 ~~f~a~v~-~~p~~ 608 (726)
++++++|+ .++..
T Consensus 170 ~~v~~lvl~~~~~~ 183 (377)
T 3i1i_A 170 HMVERMIGVITNPQ 183 (377)
T ss_dssp TTBSEEEEESCCSB
T ss_pred HHHHHhcccCcCCC
Confidence 99999999 55543
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-14 Score=144.50 Aligned_cols=122 Identities=21% Similarity=0.205 Sum_probs=83.9
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.++.+... + .+.+.|.||++||+++... .|......++++||.|+++|+||+|.+...- ....
T Consensus 12 ~~g~~l~~~~~---g--~~~~~~~vvllHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~ 77 (293)
T 1mtz_A 12 VNGIYIYYKLC---K--APEEKAKLMTMHGGPGMSH--DYLLSLRDMTKEGITVLFYDQFGCGRSEEPD-------QSKF 77 (293)
T ss_dssp ETTEEEEEEEE---C--CSSCSEEEEEECCTTTCCS--GGGGGGGGGGGGTEEEEEECCTTSTTSCCCC-------GGGC
T ss_pred ECCEEEEEEEE---C--CCCCCCeEEEEeCCCCcch--hHHHHHHHHHhcCcEEEEecCCCCccCCCCC-------CCcc
Confidence 36777765432 1 1112367899999776542 2333344556789999999999999764321 1123
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
+++++.+.+..+++.- ...+++.|+||||||.+++.++.++|++++++|+.+|...
T Consensus 78 ~~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 133 (293)
T 1mtz_A 78 TIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 133 (293)
T ss_dssp SHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred cHHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccC
Confidence 5666666555555432 0226899999999999999999999999999999998765
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-15 Score=150.41 Aligned_cols=212 Identities=12% Similarity=0.052 Sum_probs=131.4
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
..|+||++||..+.. ..|......|.+ ||.|+.+|+||+|.+...... .....+++++.+.+..+++. .+.
T Consensus 19 ~~p~vv~~HG~~~~~--~~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQ--SAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFD----FRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCCG--GGGTTTGGGGTT-TCEEEEECCTTSTTSCGGGCC----TTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCcH--HHHHHHHHHHhC-CcEEEEEcCCCCCCCCCCCCC----ccccCcHHHHHHHHHHHHHh--cCC
Confidence 348999999976543 456666677777 999999999999976432111 11223667777777777654 244
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC-CCCC-------------Chhhhc-----ccCCCC
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP-ILPL-------------IAADYE-----EFGYPG 633 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~-~~~~-------------~~~~~~-----~~g~~~ 633 (726)
+++.++|||+||++++.++.++|++++++|+.+|........... .... ...+.. .++. .
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGA-D 168 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCS-S
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccC-C
Confidence 699999999999999999999999999999999865432211000 0000 000000 0011 1
Q ss_pred ChhH-------------------HHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 634 DIDD-------------------FHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 634 ~~~~-------------------~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
.++. ...+...+....+.+ ++.|+|+++|..|..+|+..+.++.+.+... ..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~------~~~~ 241 (269)
T 4dnp_A 169 VPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGL-VKVPCHIFQTARDHSVPASVATYLKNHLGGK------NTVH 241 (269)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGG-CCSCEEEEEEESBTTBCHHHHHHHHHHSSSC------EEEE
T ss_pred ChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhcc-ccCCEEEEecCCCcccCHHHHHHHHHhCCCC------ceEE
Confidence 1111 111222333445555 8899999999999999999998888877542 1122
Q ss_pred EEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 695 LNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 695 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
+++++||.... .+.........+||.+
T Consensus 242 ~~~~~gH~~~~-~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 242 WLNIEGHLPHL-SAPTLLAQELRRALSH 268 (269)
T ss_dssp EEEEESSCHHH-HCHHHHHHHHHHHHC-
T ss_pred EeCCCCCCccc-cCHHHHHHHHHHHHhh
Confidence 26889996322 2222223345677654
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=143.60 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=132.8
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
...|+||++||..+.. ..|......|.++||.|+.+|+||+|.+.... ....+++++.+.+..++++- -+
T Consensus 10 ~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~l~~l-~~ 79 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGA--WCWYKIVALMRSSGHNVTALDLGASGINPKQA-------LQIPNFSDYLSPLMEFMASL-PA 79 (267)
T ss_dssp CCCCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHTS-CT
T ss_pred CCCCeEEEECCCCCCc--chHHHHHHHHHhcCCeEEEeccccCCCCCCcC-------CccCCHHHHHHHHHHHHHhc-CC
Confidence 3468999999987643 56888889999999999999999999764331 11247777777777777652 14
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC--------CCCCCC--------------------h
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY--------PILPLI--------------------A 623 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~--------~~~~~~--------------------~ 623 (726)
.+++.|+|||+||.+++.++.++|++++++|+.+|.......... ....+. .
T Consensus 80 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T 3sty_A 80 NEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159 (267)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECCH
T ss_pred CCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhhH
Confidence 589999999999999999999999999999988886532210000 000000 0
Q ss_pred hh-hcccCCCCChhHHHH---------------HHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCC
Q 004866 624 AD-YEEFGYPGDIDDFHA---------------IRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIY 687 (726)
Q Consensus 624 ~~-~~~~g~~~~~~~~~~---------------~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~ 687 (726)
.. ...+......+.... +....++..... .+.|+++|+|+.|..+|+..+.++++.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~--- 235 (267)
T 3sty_A 160 KFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRY-GSVKRVFIVATENDALKKEFLKLMIEKNPPD--- 235 (267)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTG-GGSCEEEEECCCSCHHHHHHHHHHHHHSCCS---
T ss_pred HHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccc-cCCCEEEEEeCCCCccCHHHHHHHHHhCCCc---
Confidence 00 000111111111111 111122222221 3589999999999999999888887777432
Q ss_pred CCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 688 DPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.+.+++++||.... ++..+......+||.+
T Consensus 236 ----~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 265 (267)
T 3sty_A 236 ----EVKEIEGSDHVTMM-SKPQQLFTTLLSIANK 265 (267)
T ss_dssp ----EEEECTTCCSCHHH-HSHHHHHHHHHHHHHH
T ss_pred ----eEEEeCCCCccccc-cChHHHHHHHHHHHHh
Confidence 23336899996322 2222233344677765
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=138.27 Aligned_cols=207 Identities=18% Similarity=0.161 Sum_probs=123.3
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.+|.+... . ++ .|.||++||..+.. ...|...+..|+++||.|+++|+||+|.+...- ......
T Consensus 9 ~~g~~l~~~~~-g-----~~-~~~vvllHG~~~~~-~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~ 75 (254)
T 2ocg_A 9 VNGVQLHYQQT-G-----EG-DHAVLLLPGMLGSG-ETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPD-----RDFPAD 75 (254)
T ss_dssp ETTEEEEEEEE-E-----CC-SEEEEEECCTTCCH-HHHCHHHHHHSCTTTEEEEEECCTTSTTCCSSC-----CCCCTT
T ss_pred ECCEEEEEEEe-c-----CC-CCeEEEECCCCCCC-ccchHHHHHHHhhCCCeEEEECCCCCCCCCCCC-----CCCChH
Confidence 37877765432 1 12 36789999976531 235777888888899999999999999764320 111111
Q ss_pred cHH-HHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc----c-cCCCC-CCChhh
Q 004866 553 SIK-DFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT----L-LYPIL-PLIAAD 625 (726)
Q Consensus 553 ~~~-D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~----~-~~~~~-~~~~~~ 625 (726)
.+. |..++++++.+.+ .+++.++|+||||.+++.++.++|++++++|+.+|...+... . ..... .+....
T Consensus 76 ~~~~~~~~~~~~l~~l~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (254)
T 2ocg_A 76 FFERDAKDAVDLMKALK---FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERT 152 (254)
T ss_dssp HHHHHHHHHHHHHHHTT---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHHh
Confidence 133 3344444444433 368999999999999999999999999999998774322110 0 00000 000000
Q ss_pred ---h-cccCCCCCh----hHHHHHHhcC-------cccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCC
Q 004866 626 ---Y-EEFGYPGDI----DDFHAIRNYS-------PYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPK 690 (726)
Q Consensus 626 ---~-~~~g~~~~~----~~~~~~~~~s-------p~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 690 (726)
. ..++..... ...+.+.... ....+.+ ++.|+|+++|..|..+|+..+.++++.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~------ 225 (254)
T 2ocg_A 153 RKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPR-VQCPALIVHGEKDPLVPRFHADFIHKHVKGS------ 225 (254)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGG-CCSCEEEEEETTCSSSCHHHHHHHHHHSTTC------
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhc-ccCCEEEEecCCCccCCHHHHHHHHHhCCCC------
Confidence 0 001100000 0011111110 1223444 8999999999999999999988887776432
Q ss_pred CcEEEEcCCCCCC
Q 004866 691 RPILLNLTTDIVE 703 (726)
Q Consensus 691 ~~~~~~~~~gH~~ 703 (726)
+ +.+++++||..
T Consensus 226 ~-~~~~~~~gH~~ 237 (254)
T 2ocg_A 226 R-LHLMPEGKHNL 237 (254)
T ss_dssp E-EEEETTCCTTH
T ss_pred E-EEEcCCCCCch
Confidence 2 22379999964
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-14 Score=143.38 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=86.4
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
+.+|.+|.+... + ..|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+.... ..
T Consensus 9 ~~~g~~l~y~~~---g-----~~~pvvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~--------~~ 70 (279)
T 1hkh_A 9 NSTPIELYYEDQ---G-----SGQPVVLIHGYPLDG--HSWERQTRELLAQGYRVITYDRRGFGGSSKVN--------TG 70 (279)
T ss_dssp TTEEEEEEEEEE---S-----SSEEEEEECCTTCCG--GGGHHHHHHHHHTTEEEEEECCTTSTTSCCCS--------SC
T ss_pred CCCCeEEEEEec---C-----CCCcEEEEcCCCchh--hHHhhhHHHHHhCCcEEEEeCCCCCCCCCCCC--------CC
Confidence 456767654321 1 124489999976643 46888889999999999999999999764321 22
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC-ceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~~ 608 (726)
.+++++.+.+..+++. .+.+++.++||||||.+++.++.++|+ +++++|+.+|+.
T Consensus 71 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~ 126 (279)
T 1hkh_A 71 YDYDTFAADLHTVLET--LDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLE 126 (279)
T ss_dssp CSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred CCHHHHHHHHHHHHHh--cCCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCC
Confidence 4566666666555543 234689999999999999999999999 999999988754
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.2e-15 Score=147.06 Aligned_cols=209 Identities=17% Similarity=0.144 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHHcCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN-SIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~ 572 (726)
.|.||++||..+.. ..|......|.++||.|+.+|+||+|.+.... ...... -.+|+.+++++|.+.+.
T Consensus 16 ~~~vvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~GhG~s~~~~-----~~~~~~~~~~d~~~~~~~l~~~~~--- 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGNS--ADVRMLGRFLESKGYTCHAPIYKGHGVPPEEL-----VHTGPDDWWQDVMNGYEFLKNKGY--- 85 (247)
T ss_dssp SCEEEEECCTTCCT--HHHHHHHHHHHHTTCEEEECCCTTSSSCHHHH-----TTCCHHHHHHHHHHHHHHHHHHTC---
T ss_pred CcEEEEECCCCCCh--HHHHHHHHHHHHCCCEEEecccCCCCCCHHHh-----cCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 36789999976543 45777788888999999999999999532110 001111 12445555666665543
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccc-ccccCCCC-----------CCChh----hhcccC-CCCCh
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDAT-NTLLYPIL-----------PLIAA----DYEEFG-YPGDI 635 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~-~~~~~~~~-----------~~~~~----~~~~~g-~~~~~ 635 (726)
+++.++|+||||.+++.++.++| ++++|+.++..... ........ ..... ....+. .+.
T Consensus 86 ~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 161 (247)
T 1tqh_A 86 EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPM-- 161 (247)
T ss_dssp CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCC--
T ss_pred CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCCH--
Confidence 68999999999999999999998 77777544322110 00000000 00000 000000 000
Q ss_pred hHHHHHHh--cCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHH
Q 004866 636 DDFHAIRN--YSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKES 713 (726)
Q Consensus 636 ~~~~~~~~--~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 713 (726)
.....+.. .+....+.+ ++.|+|+|+|..|..||+..+.++++.+.... ..+.+++++||............
T Consensus 162 ~~~~~~~~~~~~~~~~l~~-i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~gH~~~~e~~~~~~~ 235 (247)
T 1tqh_A 162 KTLKALQELIADVRDHLDL-IYAPTFVVQARHDEMINPDSANIIYNEIESPV-----KQIKWYEQSGHVITLDQEKDQLH 235 (247)
T ss_dssp TTHHHHHHHHHHHHHTGGG-CCSCEEEEEETTCSSSCTTHHHHHHHHCCCSS-----EEEEEETTCCSSGGGSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc-CCCCEEEEecCCCCCCCcchHHHHHHhcCCCc-----eEEEEeCCCceeeccCccHHHHH
Confidence 00111111 112234554 88999999999999999999998888776421 12222799999743311122334
Q ss_pred HHHHHHHHH
Q 004866 714 ALETAFLIK 722 (726)
Q Consensus 714 ~~~~~fl~~ 722 (726)
..+.+||.+
T Consensus 236 ~~i~~Fl~~ 244 (247)
T 1tqh_A 236 EDIYAFLES 244 (247)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 456788865
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-14 Score=145.31 Aligned_cols=227 Identities=14% Similarity=0.095 Sum_probs=137.4
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc-cchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
.+...+|.++.+...-|+ ..|.||++||.++.. . .|...+..| ++||.|+++|.||+|.+... ..
T Consensus 6 ~~~~~~g~~l~~~~~G~~------~~~~vvllHG~~~~~--~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~-----~~ 71 (286)
T 2yys_A 6 GYVPVGEAELYVEDVGPV------EGPALFVLHGGPGGN--AYVLREGLQDY-LEGFRVVYFDQRGSGRSLEL-----PQ 71 (286)
T ss_dssp EEEECSSCEEEEEEESCT------TSCEEEEECCTTTCC--SHHHHHHHGGG-CTTSEEEEECCTTSTTSCCC-----CS
T ss_pred eEEeECCEEEEEEeecCC------CCCEEEEECCCCCcc--hhHHHHHHHHh-cCCCEEEEECCCCCCCCCCC-----cc
Confidence 344568888876543221 247899999987643 3 577777766 56999999999999976430 00
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc---ccc-----CCC-
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN---TLL-----YPI- 618 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~---~~~-----~~~- 618 (726)
.....+++++.+.+..+++.- ..+++.++||||||.+++.++.++|+ ++++|+.+|..+... ... ...
T Consensus 72 ~~~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (286)
T 2yys_A 72 DPRLFTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPLP 148 (286)
T ss_dssp CGGGCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCCS
T ss_pred CcccCcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccch
Confidence 001246777777777776542 34689999999999999999999999 999999988653211 000 000
Q ss_pred --CC-C-------Ch-hhhcc--cCCC----------------CChhHHHH--HH---hcCcccccccCCCCCeEEEEec
Q 004866 619 --LP-L-------IA-ADYEE--FGYP----------------GDIDDFHA--IR---NYSPYDNIQKDVLYPAVLVTSS 664 (726)
Q Consensus 619 --~~-~-------~~-~~~~~--~g~~----------------~~~~~~~~--~~---~~sp~~~i~~~~~~P~lli~g~ 664 (726)
.. + .. ..... +..+ ..+..... +. .++....+.+ ++.|+|+|+|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lvi~G~ 227 (286)
T 2yys_A 149 DPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTP-ERRPLYVLVGE 227 (286)
T ss_dssp CHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCC-CSSCEEEEEET
T ss_pred hHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhh-cCCCEEEEEeC
Confidence 00 0 00 00000 0000 00000000 11 1112223444 88999999999
Q ss_pred CCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 665 FNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 665 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
.|..+|+. +.++.+ +... +.++ ++++||...- ++-.+....+.+||.+.
T Consensus 228 ~D~~~~~~-~~~~~~-~~~~------~~~~-i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 228 RDGTSYPY-AEEVAS-RLRA------PIRV-LPEAGHYLWI-DAPEAFEEAFKEALAAL 276 (286)
T ss_dssp TCTTTTTT-HHHHHH-HHTC------CEEE-ETTCCSSHHH-HCHHHHHHHHHHHHHTT
T ss_pred CCCcCCHh-HHHHHh-CCCC------CEEE-eCCCCCCcCh-hhHHHHHHHHHHHHHhh
Confidence 99999998 888887 6543 2333 6999996322 22223344456888753
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=146.18 Aligned_cols=232 Identities=13% Similarity=0.170 Sum_probs=136.8
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
+...++..+| ++.+. .. +++.|+||++||..+.. ..|......|+++||.|+.+|+||+|.+.....
T Consensus 4 ~~~~~~~~~~-~~~~~---~~----~~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~--- 70 (279)
T 4g9e_A 4 NYHELETSHG-RIAVR---ES----EGEGAPLLMIHGNSSSG--AIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAID--- 70 (279)
T ss_dssp EEEEEEETTE-EEEEE---EC----CCCEEEEEEECCTTCCG--GGGHHHHHSHHHHHEEEEEECCTTSTTSCCCSC---
T ss_pred EEEEEEcCCc-eEEEE---ec----CCCCCeEEEECCCCCch--hHHHHHHhHHHhcCCeEEeecCCCCCCCCCCCC---
Confidence 3455666666 55432 11 13468899999986643 457777888788899999999999997643210
Q ss_pred cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC-Ccccccccc--cCCCC---
Q 004866 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV-PFLDATNTL--LYPIL--- 619 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~-p~~d~~~~~--~~~~~--- 619 (726)
.....+++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|++ .++|+.+ |........ .....
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~-~~~vl~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
T 4g9e_A 71 --PDRSYSMEGYADAMTEVMQQ--LGIADAVVFGWSLGGHIGIEMIARYPEM-RGLMITGTPPVAREEVGQGFKSGPDMA 145 (279)
T ss_dssp --HHHHSSHHHHHHHHHHHHHH--HTCCCCEEEEETHHHHHHHHHTTTCTTC-CEEEEESCCCCCGGGHHHHBCCSTTGG
T ss_pred --cccCCCHHHHHHHHHHHHHH--hCCCceEEEEECchHHHHHHHHhhCCcc-eeEEEecCCCCCCCccchhhccchhhh
Confidence 11224677777777777654 2446899999999999999999999994 5555444 433221100 00000
Q ss_pred -----CCChhh----h-cccCCCCChhHHHHHHhc------------------CcccccccCCCCCeEEEEecCCCCcCh
Q 004866 620 -----PLIAAD----Y-EEFGYPGDIDDFHAIRNY------------------SPYDNIQKDVLYPAVLVTSSFNTRFGV 671 (726)
Q Consensus 620 -----~~~~~~----~-~~~g~~~~~~~~~~~~~~------------------sp~~~i~~~~~~P~lli~g~~D~~V~~ 671 (726)
.+.... . ..+..+......+.+... +....+.+ ++.|+|+++|..|..||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~l~i~g~~D~~~~~ 224 (279)
T 4g9e_A 146 LAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAE-AQLPIAVVNGRDEPFVEL 224 (279)
T ss_dssp GGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHH-CCSCEEEEEETTCSSBCH
T ss_pred hcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHh-cCCCEEEEEcCCCcccch
Confidence 000000 0 001222222222222111 11112333 789999999999999999
Q ss_pred HHHHHHH-HHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 672 WEAAKWV-ARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 672 ~~~~~~~-~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
..+.+++ +.+... +.++ ++++||.... .+.......+.+||.+.-
T Consensus 225 ~~~~~~~~~~~~~~------~~~~-~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 270 (279)
T 4g9e_A 225 DFVSKVKFGNLWEG------KTHV-IDNAGHAPFR-EAPAEFDAYLARFIRDCT 270 (279)
T ss_dssp HHHTTCCCSSBGGG------SCEE-ETTCCSCHHH-HSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCC------eEEE-ECCCCcchHH-hCHHHHHHHHHHHHHHhh
Confidence 8887766 433322 2333 6899996322 222333445678887653
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-14 Score=141.91 Aligned_cols=211 Identities=15% Similarity=0.108 Sum_probs=133.0
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
..|+||++||..+.. ..|......|. ++|.|+.+|+||+|.+... .....+++++.+.+..+++.- ..
T Consensus 14 ~~~~vvllHG~~~~~--~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~~ 81 (268)
T 3v48_A 14 DAPVVVLISGLGGSG--SYWLPQLAVLE-QEYQVVCYDQRGTGNNPDT-------LAEDYSIAQMAAELHQALVAA--GI 81 (268)
T ss_dssp TCCEEEEECCTTCCG--GGGHHHHHHHH-TTSEEEECCCTTBTTBCCC-------CCTTCCHHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHHHh-hcCeEEEECCCCCCCCCCC-------ccccCCHHHHHHHHHHHHHHc--CC
Confidence 458899999976543 46777777775 5799999999999975321 112347888888887777653 33
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc----------CC--------CCC---CChhhhcc---
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL----------YP--------ILP---LIAADYEE--- 628 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~----------~~--------~~~---~~~~~~~~--- 628 (726)
+++.++||||||.+++.++.++|++++++|+..+......... .. ..+ ....+...
T Consensus 82 ~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
T 3v48_A 82 EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAP 161 (268)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTHH
T ss_pred CCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcccc
Confidence 6899999999999999999999999999999887543211000 00 000 00000000
Q ss_pred ---------c-CCCCChh---HHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE
Q 004866 629 ---------F-GYPGDID---DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL 695 (726)
Q Consensus 629 ---------~-g~~~~~~---~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 695 (726)
. ..+.... ....+...+....+.+ ++.|+|+|+|..|..+|+..+.++.+.+... +.+ +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-i~~P~Lii~G~~D~~~p~~~~~~l~~~~p~~------~~~-~ 233 (268)
T 3v48_A 162 RLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADR-IRCPVQIICASDDLLVPTACSSELHAALPDS------QKM-V 233 (268)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGG-CCSCEEEEEETTCSSSCTHHHHHHHHHCSSE------EEE-E
T ss_pred cchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhc-CCCCeEEEEeCCCcccCHHHHHHHHHhCCcC------eEE-E
Confidence 0 0000000 1112223333344555 8999999999999999999998888877543 122 2
Q ss_pred EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 696 NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
.+++||... .++-......+.+||...+
T Consensus 234 ~~~~GH~~~-~e~p~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 234 MPYGGHACN-VTDPETFNALLLNGLASLL 261 (268)
T ss_dssp ESSCCTTHH-HHCHHHHHHHHHHHHHHHH
T ss_pred eCCCCcchh-hcCHHHHHHHHHHHHHHhc
Confidence 799999632 2222233344578887654
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=139.11 Aligned_cols=180 Identities=13% Similarity=0.030 Sum_probs=118.9
Q ss_pred CccEEEEEcCCCCCCC-CccchH-HHHHHHHC-CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 493 QNPGLLHGHGAYGELL-DKRWRS-ELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~-~~~~~~-~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
+.|+||++||+.+... ...|.. ....|+++ ||.|+.+|+||.+.. ++...++.+++.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~~------------------~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITA------------------RESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTTC------------------CHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCcc------------------cHHHHHHHHHHHhC
Confidence 4689999999876532 234555 56777777 999999999985321 12334444554321
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcc-cCCCCChhHHHHHHhcCccc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEE-FGYPGDIDDFHAIRNYSPYD 648 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~sp~~ 648 (726)
. .+++.++|+|+||++++.++.++| ++++|+.+|........ ...... +..+.. .+.
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~-------- 122 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDE--------NERASGYFTRPWQ---WEK-------- 122 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCH--------HHHHTSTTSSCCC---HHH--------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchh--------hhHHHhhhccccc---HHH--------
Confidence 2 379999999999999999999998 89999999876532100 000111 122221 111
Q ss_pred ccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 649 NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 649 ~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
+.. ...|+++++|..|..||+.++.++++.+ .. .+.+++++||.... ...+..+..+.||.+..
T Consensus 123 -~~~-~~~p~lii~G~~D~~vp~~~~~~~~~~~-~~-------~~~~~~~~gH~~~~--~~p~~~~~~~~fl~~~~ 186 (194)
T 2qs9_A 123 -IKA-NCPYIVQFGSTDDPFLPWKEQQEVADRL-ET-------KLHKFTDCGHFQNT--EFHELITVVKSLLKVPA 186 (194)
T ss_dssp -HHH-HCSEEEEEEETTCSSSCHHHHHHHHHHH-TC-------EEEEESSCTTSCSS--CCHHHHHHHHHHHTCCC
T ss_pred -HHh-hCCCEEEEEeCCCCcCCHHHHHHHHHhc-CC-------eEEEeCCCCCccch--hCHHHHHHHHHHHHhhh
Confidence 222 3568999999999999999999999888 32 23337999997543 22344556679987654
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-15 Score=150.53 Aligned_cols=212 Identities=14% Similarity=0.051 Sum_probs=133.8
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|+||++||..+.. ..|......|++ ||.|+.+|+||+|.+...... .....+++++.+.+..+++. .+.++
T Consensus 29 ~~vv~lHG~~~~~--~~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~ 99 (282)
T 3qvm_A 29 KTVLLAHGFGCDQ--NMWRFMLPELEK-QFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVA--LDLVN 99 (282)
T ss_dssp CEEEEECCTTCCG--GGGTTTHHHHHT-TSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHH--TTCCS
T ss_pred CeEEEECCCCCCc--chHHHHHHHHhc-CceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHH--cCCCc
Confidence 8999999976543 456777777777 999999999999976433111 01223677777777777654 24479
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC--CCCCC------------C-hhh---h--cccCCCCC
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY--PILPL------------I-AAD---Y--EEFGYPGD 634 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~--~~~~~------------~-~~~---~--~~~g~~~~ 634 (726)
+.++|||+||.+++.++.++|++++++|+.+|.......... ..... . ..+ . ..++.+..
T Consensus 100 ~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (282)
T 3qvm_A 100 VSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASHS 179 (282)
T ss_dssp EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTSC
T ss_pred eEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCccc
Confidence 999999999999999999999999999999987643321000 00000 0 000 0 00111111
Q ss_pred hhHH-------------------HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE
Q 004866 635 IDDF-------------------HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL 695 (726)
Q Consensus 635 ~~~~-------------------~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 695 (726)
+... ..+...+....+.+ ++.|+++++|+.|..||+..+.++.+.+... .+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~~~~ 251 (282)
T 3qvm_A 180 SELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLED-ISTPALIFQSAKDSLASPEVGQYMAENIPNS-------QLEL 251 (282)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGG-CCSCEEEEEEEECTTCCHHHHHHHHHHSSSE-------EEEE
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhc-CCCCeEEEEeCCCCcCCHHHHHHHHHhCCCC-------cEEE
Confidence 1111 11111223344554 8899999999999999999998888777432 2222
Q ss_pred EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 696 NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
++++||.... .........+.+||.++.
T Consensus 252 ~~~~gH~~~~-~~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 252 IQAEGHCLHM-TDAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp EEEESSCHHH-HCHHHHHHHHHHHHHHC-
T ss_pred ecCCCCcccc-cCHHHHHHHHHHHHHhcC
Confidence 7899996432 222233445678887653
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=132.63 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=115.0
Q ss_pred ccEEEEEcCCCCCCCCccchHHHH-HHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELK-SLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
.|+||++||..+... ..|..... .|+++||.|+.+|+|.++. .+++++.+.+..+++.- .
T Consensus 4 ~p~vv~~HG~~~~~~-~~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~---~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASST-NHWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL---H 64 (192)
T ss_dssp CCEEEEECCTTCCTT-STTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---C
T ss_pred CCEEEEEcCCCCCcc-hhHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---c
Confidence 488999999765432 14666664 6878999999999993221 15777777777666542 5
Q ss_pred CcEEEEEecccHHHHHHHHHcCCC--ceeEEEEeCCcccccccccCCCCCCChhhhccc-CCCCChhHHHHHHhcCcccc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPD--LFRAVVLEVPFLDATNTLLYPILPLIAADYEEF-GYPGDIDDFHAIRNYSPYDN 649 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~ 649 (726)
+++.++|+|+||.+++.++.++|+ +++++|+.+|+...... .+ ....| ..+.+. + .
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~-----~~----~~~~~~~~~~~~---~---------~ 123 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT-----LQ----MLDEFTQGSFDH---Q---------K 123 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT-----CG----GGGGGTCSCCCH---H---------H
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc-----ch----hhhhhhhcCCCH---H---------H
Confidence 799999999999999999999999 99999999987654311 11 11112 122211 1 1
Q ss_pred cccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc
Q 004866 650 IQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN 705 (726)
Q Consensus 650 i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 705 (726)
+.+ ++.|+++++|..|..||+.++.++++.+ .. + +..++++||+...
T Consensus 124 ~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~------~-~~~~~~~gH~~~~ 170 (192)
T 1uxo_A 124 IIE-SAKHRAVIASKDDQIVPFSFSKDLAQQI-DA------A-LYEVQHGGHFLED 170 (192)
T ss_dssp HHH-HEEEEEEEEETTCSSSCHHHHHHHHHHT-TC------E-EEEETTCTTSCGG
T ss_pred HHh-hcCCEEEEecCCCCcCCHHHHHHHHHhc-Cc------e-EEEeCCCcCcccc
Confidence 222 4569999999999999999999998888 21 2 2337999998643
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-13 Score=140.23 Aligned_cols=228 Identities=10% Similarity=0.036 Sum_probs=135.5
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCC-CCCCCccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGG-GGGGKKWHHD 544 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~-g~~g~~~~~~ 544 (726)
+...+... |.++.++.. + .+..|+||++||+.+.. ..|...+..|++ ||.|+.+|+||+ |.+..
T Consensus 46 ~~~~v~~~-~~~~~~~~~---g---~~~~~~vv~lHG~~~~~--~~~~~~~~~L~~-g~~vi~~D~~G~gG~s~~----- 110 (306)
T 2r11_A 46 KSFYISTR-FGQTHVIAS---G---PEDAPPLVLLHGALFSS--TMWYPNIADWSS-KYRTYAVDIIGDKNKSIP----- 110 (306)
T ss_dssp EEEEECCT-TEEEEEEEE---S---CTTSCEEEEECCTTTCG--GGGTTTHHHHHH-HSEEEEECCTTSSSSCEE-----
T ss_pred ceEEEecC-CceEEEEee---C---CCCCCeEEEECCCCCCH--HHHHHHHHHHhc-CCEEEEecCCCCCCCCCC-----
Confidence 44455554 446665442 1 12358899999987643 447777777877 999999999999 43321
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc------CCC
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL------YPI 618 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------~~~ 618 (726)
.....+++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|......... ...
T Consensus 111 ---~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 185 (306)
T 2r11_A 111 ---ENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGL 185 (306)
T ss_dssp ---CSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHTT
T ss_pred ---CCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhHH
Confidence 11234677877777777754 2347899999999999999999999999999999999876421100 000
Q ss_pred C-CCChhhhccc--CCCC-ChhHH---HHH-Hh-------c----------CcccccccCCCCCeEEEEecCCCCcChHH
Q 004866 619 L-PLIAADYEEF--GYPG-DIDDF---HAI-RN-------Y----------SPYDNIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 619 ~-~~~~~~~~~~--g~~~-~~~~~---~~~-~~-------~----------sp~~~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
. .........+ +... ....+ +.. .. + .....+.+ ++.|+|+++|+.|..||+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~~~~~ 264 (306)
T 2r11_A 186 TASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRS-ARVPILLLLGEHEVIYDPHS 264 (306)
T ss_dssp TSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHT-CCSCEEEEEETTCCSSCHHH
T ss_pred HHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhc-CCCCEEEEEeCCCcccCHHH
Confidence 0 0000000000 1100 00000 000 00 0 11112333 78899999999999999988
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
+.++++++... ..+.+++++||.... .........+.+||.
T Consensus 265 ~~~~~~~~~~~------~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 265 ALHRASSFVPD------IEAEVIKNAGHVLSM-EQPTYVNERVMRFFN 305 (306)
T ss_dssp HHHHHHHHSTT------CEEEEETTCCTTHHH-HSHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCC------CEEEEeCCCCCCCcc-cCHHHHHHHHHHHHh
Confidence 88777654321 123337999996322 122223334566663
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-13 Score=146.01 Aligned_cols=223 Identities=18% Similarity=0.178 Sum_probs=135.3
Q ss_pred ccEEEEEcCCCCCCCCc-----------cchHHH---HHHHHCCcEEEEEccCC--CCCCCCcccccc--c---ccCCCC
Q 004866 494 NPGLLHGHGAYGELLDK-----------RWRSEL---KSLLDRGWVVAFADVRG--GGGGGKKWHHDG--R---RTKKLN 552 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~-----------~~~~~~---~~l~~~G~~v~~~d~RG--~g~~g~~~~~~~--~---~~~~~~ 552 (726)
.|+||++||..+..... .|...+ ..|+++||.|+.+|+|| +|.++..-.... . ......
T Consensus 46 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s~~~~~~~~~~~~~~~~~~~~ 125 (366)
T 2pl5_A 46 NNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFV 125 (366)
T ss_dssp CCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCC
T ss_pred CceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCCCCCCCCCCCCccccCCCCcc
Confidence 58899999976654310 355444 24567899999999999 665542210000 0 000124
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcE-EEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc------------cCCC-
Q 004866 553 SIKDFISCARFLIEKEIVKEHKL-AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL------------LYPI- 618 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~------------~~~~- 618 (726)
+++|+.+.+..+++. .+.+++ .|+|||+||.+++.++.++|++++++|+.+|........ ....
T Consensus 126 ~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
T 2pl5_A 126 SIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNW 203 (366)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTC
T ss_pred cHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCccCCCccchhhHHHHHHHHhCccc
Confidence 788888888888765 344788 799999999999999999999999999999876532100 0000
Q ss_pred --------CC---------------CChhhh-cccC---------------------------CCCChhH----HHHHHh
Q 004866 619 --------LP---------------LIAADY-EEFG---------------------------YPGDIDD----FHAIRN 643 (726)
Q Consensus 619 --------~~---------------~~~~~~-~~~g---------------------------~~~~~~~----~~~~~~ 643 (726)
.+ .....+ ..+. ....... ...+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
T 2pl5_A 204 KNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDH 283 (366)
T ss_dssp GGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHH
T ss_pred ccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHHHHhhhcccChhHHHHHHhhhhh
Confidence 00 000000 0000 0001111 122333
Q ss_pred cCcc------cccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEE-cCCCCCCCchhhHHHHHHHH
Q 004866 644 YSPY------DNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLN-LTTDIVEENRYLQCKESALE 716 (726)
Q Consensus 644 ~sp~------~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~gH~~~~~~~~~~~~~~~ 716 (726)
++.. ..+.+ ++.|+|+|+|..|..||+..+.++++.+...++. ..+.++ +++||.... ++.......+
T Consensus 284 ~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~-e~p~~~~~~i 358 (366)
T 2pl5_A 284 YSLGKGKELTAALSN-ATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKR---VFYVELQSGEGHDSFL-LKNPKQIEIL 358 (366)
T ss_dssp CBCCSHHHHHHHHTT-CCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCC---EEEEEECCCBSSGGGG-SCCHHHHHHH
T ss_pred hccccccchhhhhcc-CCCCEEEEecCCCcccCHHHHHHHHHHhhhcccC---eEEEEeCCCCCcchhh-cChhHHHHHH
Confidence 3221 14454 7899999999999999999999999999876421 122236 799997543 1112334445
Q ss_pred HHHHHHh
Q 004866 717 TAFLIKM 723 (726)
Q Consensus 717 ~~fl~~~ 723 (726)
.+||.+.
T Consensus 359 ~~fl~~~ 365 (366)
T 2pl5_A 359 KGFLENP 365 (366)
T ss_dssp HHHHHCC
T ss_pred HHHHccC
Confidence 6888653
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=144.49 Aligned_cols=208 Identities=13% Similarity=0.088 Sum_probs=128.8
Q ss_pred CccEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
+.|+||++||..+.. ..|. .....|+++||.|+.+|+||+|.+... ...+++++.+.+..+++. .+
T Consensus 42 ~~~~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~---------~~~~~~~~~~~~~~~l~~--l~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGAG--RTWHPHQVPAFLAAGYRCITFDNRGIGATENA---------EGFTTQTMVADTAALIET--LD 108 (293)
T ss_dssp SSEEEEEECCTTCCG--GGGTTTTHHHHHHTTEEEEEECCTTSGGGTTC---------CSCCHHHHHHHHHHHHHH--HT
T ss_pred CCCEEEEECCCCCch--hhcchhhhhhHhhcCCeEEEEccCCCCCCCCc---------ccCCHHHHHHHHHHHHHh--cC
Confidence 458899999976643 4465 467888899999999999999754211 124667777666666654 24
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc------------CCCCCCCh----hhhcccC-----
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL------------YPILPLIA----ADYEEFG----- 630 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------------~~~~~~~~----~~~~~~g----- 630 (726)
.+++.++|+|+||.+++.++.++|++++++|+.+|......... ....+... .....+.
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 46899999999999999999999999999999998764321100 00000000 0000000
Q ss_pred C---------------CCChhHHHHHH----hcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCC
Q 004866 631 Y---------------PGDIDDFHAIR----NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 631 ~---------------~~~~~~~~~~~----~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 691 (726)
. ........... ..+....+.+ ++.|+|+++|+.|..+|+..+.++.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~------- 260 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRN-IAAPVLVIGFADDVVTPPYLGREVADALPNG------- 260 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTT-CCSCEEEEEETTCSSSCHHHHHHHHHHSTTE-------
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhh-CCCCEEEEEeCCCCCCCHHHHHHHHHHCCCc-------
Confidence 0 00000000000 0111223344 7899999999999999999998888877432
Q ss_pred cEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 692 PILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.+.+++++||.... .+.......+.+||.+
T Consensus 261 ~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 261 RYLQIPDAGHLGFF-ERPEAVNTAMLKFFAS 290 (293)
T ss_dssp EEEEETTCCTTHHH-HSHHHHHHHHHHHHHT
T ss_pred eEEEeCCCcchHhh-hCHHHHHHHHHHHHHh
Confidence 12237899996322 2222233445677754
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-14 Score=138.33 Aligned_cols=185 Identities=20% Similarity=0.168 Sum_probs=121.9
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHH------H
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLI------E 566 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~------~ 566 (726)
+.|+||++||..+.. ..|. ....|+ +||.|+.+|+||+|.+.. ....+++++.+.+..++ +
T Consensus 15 ~~~~vv~~hG~~~~~--~~~~-~~~~l~-~g~~v~~~d~~g~g~s~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 3e0x_A 15 SPNTLLFVHGSGCNL--KIFG-ELEKYL-EDYNCILLDLKGHGESKG---------QCPSTVYGYIDNVANFITNSEVTK 81 (245)
T ss_dssp CSCEEEEECCTTCCG--GGGT-TGGGGC-TTSEEEEECCTTSTTCCS---------CCCSSHHHHHHHHHHHHHHCTTTT
T ss_pred CCCEEEEEeCCcccH--HHHH-HHHHHH-hCCEEEEecCCCCCCCCC---------CCCcCHHHHHHHHHHHHHhhhhHh
Confidence 468999999976643 3455 445554 899999999999997631 12346777777777666 3
Q ss_pred cCCCCCCcEEEEEecccHHHHHHHHHc-CCCceeEEEEeCCcccccccc-------cCCCCC----------CChhhhcc
Q 004866 567 KEIVKEHKLAGWGYSAGGLLVAAAINC-CPDLFRAVVLEVPFLDATNTL-------LYPILP----------LIAADYEE 628 (726)
Q Consensus 567 ~~~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~-------~~~~~~----------~~~~~~~~ 628 (726)
. .. ++.++|+|+||.+++.++.+ +|+ ++++|+.+|........ ...... ........
T Consensus 82 ~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
T 3e0x_A 82 H--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEK 156 (245)
T ss_dssp T--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHH
T ss_pred h--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHH
Confidence 3 22 99999999999999999999 999 99999999987652100 000000 00000000
Q ss_pred c-CC-CCCh----hHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q 004866 629 F-GY-PGDI----DDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIV 702 (726)
Q Consensus 629 ~-g~-~~~~----~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 702 (726)
+ .. ...+ ..+..+..++....+.+ ++.|+++++|..|..||+..+.++++.+... .+.+++++||.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~gH~ 228 (245)
T 3e0x_A 157 YFETLEKDPDIMINDLIACKLIDLVDNLKN-IDIPVKAIVAKDELLTLVEYSEIIKKEVENS-------ELKIFETGKHF 228 (245)
T ss_dssp HHTTSCSSHHHHHHHHHHHHHCBCGGGGGG-CCSCEEEEEETTCSSSCHHHHHHHHHHSSSE-------EEEEESSCGGG
T ss_pred HHHHHhcCcHHHHHHHHHhccccHHHHHHh-CCCCEEEEEeCCCCCCCHHHHHHHHHHcCCc-------eEEEeCCCCcc
Confidence 0 00 0011 11222334455556665 8999999999999999999998888877532 22237899996
Q ss_pred C
Q 004866 703 E 703 (726)
Q Consensus 703 ~ 703 (726)
.
T Consensus 229 ~ 229 (245)
T 3e0x_A 229 L 229 (245)
T ss_dssp H
T ss_pred e
Confidence 3
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=140.11 Aligned_cols=210 Identities=10% Similarity=-0.022 Sum_probs=127.2
Q ss_pred ccEEEEEcCC-CCCCCCccchHHH-HHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 494 NPGLLHGHGA-YGELLDKRWRSEL-KSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 494 ~P~vl~~hGg-~~~~~~~~~~~~~-~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
.|.||++||. ++......|...+ ..|+++ |.|+++|+||+|.+... .....+++++.+.+..++++- +
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDAV-------VMDEQRGLVNARAVKGLMDAL--D 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHHT--T
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCCCCCCCCC-------CCcCcCHHHHHHHHHHHHHHh--C
Confidence 3689999996 4433334566666 677665 99999999999976432 111346778777777776542 3
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc---------------CCCCCCChhhhcc-cCCC--C
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL---------------YPILPLIAADYEE-FGYP--G 633 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~---------------~~~~~~~~~~~~~-~g~~--~ 633 (726)
.+++.|+||||||.+++.++.++|++++++|+.+|......... ............. ...+ .
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLI 182 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGC
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccC
Confidence 47899999999999999999999999999999887642110000 0000000000000 0011 0
Q ss_pred ChhHH--------------HHHH---------hcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCC
Q 004866 634 DIDDF--------------HAIR---------NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPK 690 (726)
Q Consensus 634 ~~~~~--------------~~~~---------~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 690 (726)
.++.. ..+. .......+.+ ++.|+|+|+|..|..+|+..+.++++.+...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~------ 255 (286)
T 2puj_A 183 TEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE-IKAKTFITWGRDDRFVPLDHGLKLLWNIDDA------ 255 (286)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGG-CCSCEEEEEETTCSSSCTHHHHHHHHHSSSE------
T ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhh-cCCCEEEEEECCCCccCHHHHHHHHHHCCCC------
Confidence 11110 1111 0112234444 8899999999999999999988887776532
Q ss_pred CcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 691 RPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 691 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
+ +.+++++||...- ++..+....+.+||.+
T Consensus 256 ~-~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 256 R-LHVFSKCGAWAQW-EHADEFNRLVIDFLRH 285 (286)
T ss_dssp E-EEEESSCCSCHHH-HTHHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCCCccc-cCHHHHHHHHHHHHhc
Confidence 2 2227899996322 2222223345678764
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-14 Score=142.65 Aligned_cols=222 Identities=13% Similarity=0.090 Sum_probs=131.2
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCC-CCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGA-YGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
.+|.+|.+... + ..|.||++||. .+......|...+..| ++||.|+++|+||+|.+... . ...
T Consensus 12 ~~g~~l~y~~~---G-----~g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~------~-~~~ 75 (282)
T 1iup_A 12 AAGVLTNYHDV---G-----EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRP------E-NYN 75 (282)
T ss_dssp ETTEEEEEEEE---C-----CSSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC------T-TCC
T ss_pred ECCEEEEEEec---C-----CCCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCCCCCCCC------C-CCC
Confidence 47877765331 1 23679999994 3322112455555555 67999999999999976422 0 112
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc------cccCCCCCC----
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN------TLLYPILPL---- 621 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~------~~~~~~~~~---- 621 (726)
.+++++.+.+..++++- ..+++.++||||||.+++.++.++|++++++|+.+|...... .+... .+.
T Consensus 76 ~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (282)
T 1iup_A 76 YSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY-TPSIENM 152 (282)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC-CSCHHHH
T ss_pred CCHHHHHHHHHHHHHHh--CCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC-CCcHHHH
Confidence 46777777777666542 346899999999999999999999999999999887543110 00000 000
Q ss_pred --------------Chhh----hcccCCCCChhHHHHHHh---------cC-cccccccCCCCCeEEEEecCCCCcChHH
Q 004866 622 --------------IAAD----YEEFGYPGDIDDFHAIRN---------YS-PYDNIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 622 --------------~~~~----~~~~g~~~~~~~~~~~~~---------~s-p~~~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
.... +.....+.....+..+.. .. +...+.+ ++.|+|+|+|+.|..+|+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~p~~~ 231 (282)
T 1iup_A 153 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKT-LPNETLIIHGREDQVVPLSS 231 (282)
T ss_dssp HHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTT-CCSCEEEEEETTCSSSCHHH
T ss_pred HHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhh-cCCCEEEEecCCCCCCCHHH
Confidence 0000 000011110000000000 00 0123444 88999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
+.++++.+... + +.+++++||...- ++..+....+.+||.+
T Consensus 232 ~~~~~~~~~~~------~-~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 232 SLRLGELIDRA------Q-LHVFGRCGHWTQI-EQTDRFNRLVVEFFNE 272 (282)
T ss_dssp HHHHHHHCTTE------E-EEEESSCCSCHHH-HSHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCC------e-EEEECCCCCCccc-cCHHHHHHHHHHHHhc
Confidence 88887776432 2 2237999996322 2222233345688865
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=141.26 Aligned_cols=226 Identities=16% Similarity=0.037 Sum_probs=133.3
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCC-CCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGA-YGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
.+|.++.+... + ..|.||++||. ++......|...+..|.+. |.|+.+|+||+|.+. . ....
T Consensus 23 ~~g~~l~y~~~---g-----~g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~-~-------~~~~ 85 (296)
T 1j1i_A 23 AGGVETRYLEA---G-----KGQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLGFGKTA-K-------PDIE 85 (296)
T ss_dssp ETTEEEEEEEE---C-----CSSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTTSTTSC-C-------CSSC
T ss_pred ECCEEEEEEec---C-----CCCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCCCCCCC-C-------CCCC
Confidence 47877765321 1 23679999996 4333334455666666655 999999999999764 1 1112
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc--C---CCCCCCh---
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL--Y---PILPLIA--- 623 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~--~---~~~~~~~--- 623 (726)
.+++++.+.+..+++.-.+ .+++.|+|+||||.+++.++.++|++++++|+.+|......... . ...+...
T Consensus 86 ~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (296)
T 1j1i_A 86 YTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMV 164 (296)
T ss_dssp CCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHHH
Confidence 4677777776666654222 26899999999999999999999999999999887642111000 0 0000000
Q ss_pred hhhcc-cCCCC--ChhHH-------------HHHHh-----------cCcccccccCCCCCeEEEEecCCCCcChHHHHH
Q 004866 624 ADYEE-FGYPG--DIDDF-------------HAIRN-----------YSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 676 (726)
Q Consensus 624 ~~~~~-~g~~~--~~~~~-------------~~~~~-----------~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~ 676 (726)
..... ...+. ..+.. ..+.. ......+.+ ++.|+|+|+|..|..||+..+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~Lii~G~~D~~~~~~~~~~ 243 (296)
T 1j1i_A 165 HLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRK-VQVPTLVVQGKDDKVVPVETAYK 243 (296)
T ss_dssp HHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTT-CCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhc-CCCCEEEEEECCCcccCHHHHHH
Confidence 00000 01111 11100 00100 011123444 78999999999999999999888
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 677 WVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 677 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+++.+... .+.+++++||.... ++.......+.+||.+.++
T Consensus 244 ~~~~~~~~-------~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~~~ 284 (296)
T 1j1i_A 244 FLDLIDDS-------WGYIIPHCGHWAMI-EHPEDFANATLSFLSLRVD 284 (296)
T ss_dssp HHHHCTTE-------EEEEESSCCSCHHH-HSHHHHHHHHHHHHHHC--
T ss_pred HHHHCCCC-------EEEEECCCCCCchh-cCHHHHHHHHHHHHhccCC
Confidence 87776432 12237899996322 2222333456789987653
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=138.41 Aligned_cols=224 Identities=15% Similarity=0.133 Sum_probs=136.1
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
.+.+.||.+|.+...-+ +..|+||++||..... ..|...+..|++ +|.|+.+|.||+|.+...
T Consensus 8 ~~~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~~--~~w~~~~~~L~~-~~~vi~~D~rG~G~S~~~-------- 70 (266)
T 3om8_A 8 FLATSDGASLAYRLDGA------AEKPLLALSNSIGTTL--HMWDAQLPALTR-HFRVLRYDARGHGASSVP-------- 70 (266)
T ss_dssp EEECTTSCEEEEEEESC------TTSCEEEEECCTTCCG--GGGGGGHHHHHT-TCEEEEECCTTSTTSCCC--------
T ss_pred EEeccCCcEEEEEecCC------CCCCEEEEeCCCccCH--HHHHHHHHHhhc-CcEEEEEcCCCCCCCCCC--------
Confidence 45678999988654311 2358899999865532 457777777765 799999999999976432
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc---------cccC-CC
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN---------TLLY-PI 618 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~---------~~~~-~~ 618 (726)
....+++++.+.+..+++.- ..+++.++||||||.+++.++.++|++++++|+..+...... .... ..
T Consensus 71 ~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
T 3om8_A 71 PGPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAED 148 (266)
T ss_dssp CSCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHcccc
Confidence 12246777777776666542 336899999999999999999999999999998875432110 0000 00
Q ss_pred CCCC-hhhhccc-------CCCCChhHH----------------HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHH
Q 004866 619 LPLI-AADYEEF-------GYPGDIDDF----------------HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEA 674 (726)
Q Consensus 619 ~~~~-~~~~~~~-------g~~~~~~~~----------------~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~ 674 (726)
.... ......+ ..+...+.+ ..+...+....+.+ ++.|+|+|+|+.|..+|+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-i~~P~Lvi~G~~D~~~~~~~~ 227 (266)
T 3om8_A 149 MSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLAR-IERPTLVIAGAYDTVTAASHG 227 (266)
T ss_dssp SHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGG-CCSCEEEEEETTCSSSCHHHH
T ss_pred HHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcC-CCCCEEEEEeCCCCCCCHHHH
Confidence 0000 0000000 001000000 11111222234554 899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 675 AKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 675 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
..+.+.+... +.++ .+ +||...- ++-.+..+...+||.
T Consensus 228 ~~l~~~ip~a------~~~~-i~-~gH~~~~-e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 228 ELIAASIAGA------RLVT-LP-AVHLSNV-EFPQAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHHSTTC------EEEE-ES-CCSCHHH-HCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCC------EEEE-eC-CCCCccc-cCHHHHHHHHHHHhc
Confidence 8888877643 2344 45 8995321 222222333456763
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=140.62 Aligned_cols=121 Identities=15% Similarity=0.106 Sum_probs=89.1
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHH-HHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSEL-KSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
.||.+|.+...-+ ...|.||++||..+.. ..|.... ..|+++||.|+.+|+||+|.+... . .....
T Consensus 8 ~~g~~l~y~~~G~------~~~~~vvllHG~~~~~--~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~--~---~~~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGD------PADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTR--D---FAAHP 74 (298)
T ss_dssp ETTEEEEEEEESC------TTSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCC--C---TTTSC
T ss_pred cCCeEEEEEeccC------CCCCeEEEEcCCCCCc--cchHHHHHHHHHhCCCEEEeeCCCCCCCCCCC--C---CCcCC
Confidence 5888877644311 1246899999976543 4576644 888899999999999999986431 0 01123
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+++++.+.+..+++. .+.+++.++||||||.+++.++.++|++++++|+..+..
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 4677777777766654 234689999999999999999999999999999987654
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=136.89 Aligned_cols=212 Identities=12% Similarity=0.099 Sum_probs=130.1
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH--CCcEEEEEccCCC------C
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD--RGWVVAFADVRGG------G 535 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~d~RG~------g 535 (726)
..+.+.+.+. .+...++.|+. ...++||++||.-+. ...|......|.. .++.+++|+.+-. +
T Consensus 14 ~~~~~~~~~~---~l~y~ii~P~~----~~~~~VI~LHG~G~~--~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~ 84 (246)
T 4f21_A 14 GTENLYFQSN---AMNYELMEPAK----QARFCVIWLHGLGAD--GHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMG 84 (246)
T ss_dssp ---------C---CCCEEEECCSS----CCCEEEEEEEC--CC--CCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHH
T ss_pred ccceEEEecC---CcCceEeCCCC----cCCeEEEEEcCCCCC--HHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCC
Confidence 3455556553 45666787763 235789999984221 2334444444432 3788999986422 1
Q ss_pred CCCCcccccccccC-------CCCcHHHHHHHHHHHHH---cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 536 GGGKKWHHDGRRTK-------KLNSIKDFISCARFLIE---KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 536 ~~g~~~~~~~~~~~-------~~~~~~D~~~~~~~l~~---~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
..|..|+....... ....+...++.++.+++ +.-++++||++.|.|+||.|++.++.++|+.|+++|+.+
T Consensus 85 ~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~s 164 (246)
T 4f21_A 85 MQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALS 164 (246)
T ss_dssp HHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEES
T ss_pred CCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceehh
Confidence 12445654322111 11223333444444432 124799999999999999999999999999999999988
Q ss_pred CcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcC
Q 004866 606 PFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVREST 685 (726)
Q Consensus 606 p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~ 685 (726)
|.+..... +.. ...... .++|++++||..|+.||+..+.+.++.|+++|
T Consensus 165 G~lp~~~~---------------~~~--------------~~~~~~--~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g 213 (246)
T 4f21_A 165 TYLPAWDN---------------FKG--------------KITSIN--KGLPILVCHGTDDQVLPEVLGHDLSDKLKVSG 213 (246)
T ss_dssp CCCTTHHH---------------HST--------------TCCGGG--TTCCEEEEEETTCSSSCHHHHHHHHHHHHTTT
T ss_pred hccCcccc---------------ccc--------------cccccc--cCCchhhcccCCCCccCHHHHHHHHHHHHHCC
Confidence 85432110 000 001111 36799999999999999999999999999998
Q ss_pred CCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 686 IYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 686 ~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.+ +.+ |++.||... .++..+..+||.+.|.
T Consensus 214 ~~-----v~~~~y~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 214 FA-----NEYKHYVGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp CC-----EEEEEESSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred CC-----eEEEEECCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 53 333 899999653 2445667899999874
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-14 Score=142.82 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=91.6
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+...||.+|.+... ++.|+||++||..+.. ..|......|.+ ||.|+.+|+||+|.+...-.. ...
T Consensus 17 ~~~~~g~~l~~~~~--------g~~~~vv~lHG~~~~~--~~~~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~---~~~ 82 (306)
T 3r40_A 17 WINTSSGRIFARVG--------GDGPPLLLLHGFPQTH--VMWHRVAPKLAE-RFKVIVADLPGYGWSDMPESD---EQH 82 (306)
T ss_dssp EECCTTCCEEEEEE--------ECSSEEEEECCTTCCG--GGGGGTHHHHHT-TSEEEEECCTTSTTSCCCCCC---TTC
T ss_pred EEEeCCEEEEEEEc--------CCCCeEEEECCCCCCH--HHHHHHHHHhcc-CCeEEEeCCCCCCCCCCCCCC---ccc
Confidence 33558888876442 1347899999986644 457777777777 999999999999976433110 001
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
...+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+.+|..
T Consensus 83 ~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 139 (306)
T 3r40_A 83 TPYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILP 139 (306)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCC
Confidence 134678887777777765 344689999999999999999999999999999999753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-12 Score=135.80 Aligned_cols=251 Identities=11% Similarity=0.082 Sum_probs=164.9
Q ss_pred CCCCCEEEEEEeCCCCc-EEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCcee
Q 004866 130 SPDHKFLAYTMYDKDND-YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA 207 (726)
Q Consensus 130 SPDG~~la~~~~~~g~e-~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~ 207 (726)
.+.+++|||+....+++ ..+|+++|++++....+.. ...+..++|||||+.|+|...+. ....|+++++.+++...
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQ 217 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEE
Confidence 35589999987654331 2689999999776555443 44677899999999999987543 23589999998875332
Q ss_pred EEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEecCcccCC
Q 004866 208 LLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTDAAKEGQ 286 (726)
Q Consensus 208 lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t~~~~~~~ 286 (726)
+... . .....+.|||||++|++.........||++|+.+ ++.+.+...... ....+++||+.|++.++.++
T Consensus 218 -l~~~-~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g--- 289 (415)
T 2hqs_A 218 -VASF-P-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG--- 289 (415)
T ss_dssp -EECC-S-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEEEECTTS---
T ss_pred -eecC-C-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCC--CCEEeCcCCCCcccceEECCCCCEEEEEECCCC---
Confidence 3222 1 2334689999999999888777778999999987 445555544332 34567899999999887543
Q ss_pred CCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE--EeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeeccccccc
Q 004866 287 EADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHF 364 (726)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~ 364 (726)
..+|+.+++. . .....+..+ ...+.. +++.++.|++....+|...|+++++.++. .. .
T Consensus 290 ---~~~i~~~d~~-~---~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~~-----~ 349 (415)
T 2hqs_A 290 ---RPQVYKVNIN-G---GAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQ-----V 349 (415)
T ss_dssp ---SCEEEEEETT-S---SCCEECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------EE-----E
T ss_pred ---CcEEEEEECC-C---CCEEEEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------EE-----E
Confidence 3568888876 2 223333222 223433 44456788888887788899999987543 11 1
Q ss_pred ccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEe
Q 004866 365 LPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQ 415 (726)
Q Consensus 365 ~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~ 415 (726)
+.....+.. ..+++++..+++... ......||.+|+.++..+.|..
T Consensus 350 l~~~~~~~~----~~~spdg~~l~~~s~-~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 350 LSSTFLDET----PSLAPNGTMVIYSSS-QGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp CCCSSSCEE----EEECTTSSEEEEEEE-ETTEEEEEEEETTSCCEEECCC
T ss_pred ecCCCCcCC----eEEcCCCCEEEEEEc-CCCccEEEEEECCCCcEEEeeC
Confidence 111111222 234567777665443 3335589999998777766543
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=140.00 Aligned_cols=228 Identities=13% Similarity=0.059 Sum_probs=132.4
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCC-CCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGA-YGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
+...+|.++.+... +. ...|+||++||. ++......|...+..|+++ |.|+++|+||+|.+...-
T Consensus 11 ~~~~~g~~l~y~~~---g~---~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~------- 76 (285)
T 1c4x_A 11 RFPSGTLASHALVA---GD---PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFGQSEYPE------- 76 (285)
T ss_dssp EECCTTSCEEEEEE---SC---TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTTSTTSCCCS-------
T ss_pred EEEECCEEEEEEec---CC---CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCCCCCCCCCC-------
Confidence 34558888775432 10 124779999995 4333334566666777655 999999999999764321
Q ss_pred CCCCcHHHH----HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc-----------
Q 004866 549 KKLNSIKDF----ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT----------- 613 (726)
Q Consensus 549 ~~~~~~~D~----~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~----------- 613 (726)
....+++++ .+.+..++++ .+.+++.++||||||.+++.++.++|++++++|+.+|.......
T Consensus 77 ~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 1c4x_A 77 TYPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAF 154 (285)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTG
T ss_pred CcccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHH
Confidence 112356666 6555555543 22368999999999999999999999999999999876421100
Q ss_pred ccCCCCCCChhhhcc-cCCCC----Chh-------------HHHHHHh-----cC-------cccccccCCCCCeEEEEe
Q 004866 614 LLYPILPLIAADYEE-FGYPG----DID-------------DFHAIRN-----YS-------PYDNIQKDVLYPAVLVTS 663 (726)
Q Consensus 614 ~~~~~~~~~~~~~~~-~g~~~----~~~-------------~~~~~~~-----~s-------p~~~i~~~~~~P~lli~g 663 (726)
+.............. ...+. .++ ....+.. .. +...+.+ ++.|+|+|+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G 233 (285)
T 1c4x_A 155 YADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGR-LPHDVLVFHG 233 (285)
T ss_dssp GGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTT-CCSCEEEEEE
T ss_pred hccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhcc-CCCCEEEEEe
Confidence 000000000000000 01111 000 0010100 00 1123344 7899999999
Q ss_pred cCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 664 SFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 664 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
..|..||+..+.++++.+... +.+ +++++||.... ++.......+.+||.+
T Consensus 234 ~~D~~~p~~~~~~~~~~~~~~------~~~-~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 234 RQDRIVPLDTSLYLTKHLKHA------ELV-VLDRCGHWAQL-ERWDAMGPMLMEHFRA 284 (285)
T ss_dssp TTCSSSCTHHHHHHHHHCSSE------EEE-EESSCCSCHHH-HSHHHHHHHHHHHHHC
T ss_pred CCCeeeCHHHHHHHHHhCCCc------eEE-EeCCCCcchhh-cCHHHHHHHHHHHHhc
Confidence 999999999988887766432 222 27899996322 1222223345677753
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=138.60 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=86.9
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
..++...||.++.+...-+ ...|.||++||+++......+ ...|...||.|+++|.||+|.+...
T Consensus 16 ~~~~~~~~g~~l~~~~~g~------~~g~~vvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G~G~S~~~------ 80 (317)
T 1wm1_A 16 SGWLDTGDGHRIYWELSGN------PNGKPAVFIHGGPGGGISPHH---RQLFDPERYKVLLFDQRGCGRSRPH------ 80 (317)
T ss_dssp EEEEECSSSCEEEEEEEEC------TTSEEEEEECCTTTCCCCGGG---GGGSCTTTEEEEEECCTTSTTCBST------
T ss_pred eeEEEcCCCcEEEEEEcCC------CCCCcEEEECCCCCcccchhh---hhhccccCCeEEEECCCCCCCCCCC------
Confidence 3456677898876543211 123568999998764422212 2233357999999999999976321
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.......+.++.+.+..++++ .+.+++.|+||||||.+++.++.++|++++++|+..+..
T Consensus 81 ~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 140 (317)
T 1wm1_A 81 ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 140 (317)
T ss_dssp TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCC
Confidence 111234677777777777764 234689999999999999999999999999999987653
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=135.96 Aligned_cols=222 Identities=16% Similarity=0.119 Sum_probs=135.5
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.+|.+...-++ +.+.|.||++||..+.. ..|...+..|++ +|.|+.+|+||+|.+... ....
T Consensus 9 ~~g~~l~y~~~g~~----~~~~~~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~--------~~~~ 73 (266)
T 2xua_A 9 VNGTELHYRIDGER----HGNAPWIVLSNSLGTDL--SMWAPQVAALSK-HFRVLRYDTRGHGHSEAP--------KGPY 73 (266)
T ss_dssp CSSSEEEEEEESCS----SSCCCEEEEECCTTCCG--GGGGGGHHHHHT-TSEEEEECCTTSTTSCCC--------SSCC
T ss_pred ECCEEEEEEEcCCc----cCCCCeEEEecCccCCH--HHHHHHHHHHhc-CeEEEEecCCCCCCCCCC--------CCCC
Confidence 48888886554221 11257899999965533 457777777765 599999999999976432 1224
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc--cc-------CCCCC-CC
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT--LL-------YPILP-LI 622 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~--~~-------~~~~~-~~ 622 (726)
+++++.+.+..+++.- ..+++.++||||||.+++.++.++|++++++|+.+|....... .. ..... ..
T Consensus 74 ~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (266)
T 2xua_A 74 TIEQLTGDVLGLMDTL--KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHALA 151 (266)
T ss_dssp CHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHHH
Confidence 6777777776666542 3368999999999999999999999999999998775432100 00 00000 00
Q ss_pred hhhhccc-C------CC------------CChhH----HHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHH
Q 004866 623 AADYEEF-G------YP------------GDIDD----FHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVA 679 (726)
Q Consensus 623 ~~~~~~~-g------~~------------~~~~~----~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~ 679 (726)
......+ . .+ ..... ...+........+.+ ++.|+|+|+|..|..+|+..+.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lvi~G~~D~~~~~~~~~~~~~ 230 (266)
T 2xua_A 152 DAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPG-IKVPALVISGTHDLAATPAQGRELAQ 230 (266)
T ss_dssp HHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGG-CCSCEEEEEETTCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhcc-CCCCEEEEEcCCCCcCCHHHHHHHHH
Confidence 0000000 0 00 00000 111222333344554 89999999999999999998888877
Q ss_pred HHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 680 RVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 680 ~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
.+... +.++ ++ +||.... ++..+....+.+||.
T Consensus 231 ~~~~~------~~~~-~~-~gH~~~~-e~p~~~~~~i~~fl~ 263 (266)
T 2xua_A 231 AIAGA------RYVE-LD-ASHISNI-ERADAFTKTVVDFLT 263 (266)
T ss_dssp HSTTC------EEEE-ES-CCSSHHH-HTHHHHHHHHHHHHT
T ss_pred hCCCC------EEEE-ec-CCCCchh-cCHHHHHHHHHHHHH
Confidence 76542 2333 68 9996422 222223334567774
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-13 Score=143.74 Aligned_cols=256 Identities=9% Similarity=0.001 Sum_probs=157.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc-c-cceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV-R-VSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~-~-~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..++|||||++|||+.+..|. ..|+++|+++|+..+++... . ...+.|||||+.|+|...+ .+||++++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~--~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~ 110 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMKVDLE 110 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSS--CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEEEETT
T ss_pred eecCcCCCCCCEEEEEEecCCC--ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC-----CcEEEEECC
Confidence 4567899999999999876554 36899999999877765422 2 2348999999999998643 279999998
Q ss_pred CCCceeEEeeecCCceEEE-------------------EEEcCCCcEEEEEE--cCCCceEEEEEeCCCCCCCeEEeecc
Q 004866 202 STDEDALLLEESNENVYVN-------------------IRHTKDFHFVCVHT--FSTTSSKVFLINAADPFSGLTLIWEC 260 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~-------------------~~~s~Dg~~l~~~~--~~~~~~~l~~~d~~~~~~~~~~l~~~ 260 (726)
+++. +.++..... +... +.++|||+++++.. .......||++|+.+ ++.+.+...
T Consensus 111 ~~~~-~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~~~~~ 186 (396)
T 3c5m_A 111 TLEE-QVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET--GELEVIHQD 186 (396)
T ss_dssp TCCE-EEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT--CCEEEEEEE
T ss_pred CCCc-EEEEecccc-cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC--CcEEeeccC
Confidence 7653 333332221 1111 24577777665543 123457899999987 445555543
Q ss_pred CCc-eEEeeee-cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEe--eeCCEEEEEEEeC
Q 004866 261 EGL-AHCIVEH-HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVD--FCKTHMALILREG 336 (726)
Q Consensus 261 ~~~-~~~~~~~-~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~--~~~~~lv~~~~~~ 336 (726)
... ....+++ +|+.|++.++.... ..+.+|+.++++ ...++.+........+..+. ..++.|++....+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~---~~~~~l~~~d~~----~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHD---LVDARMWLVNED----GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSS---SCSCCCEEEETT----SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred CcccccceECCCCCCEEEEEecCCCC---CCCceEEEEECC----CCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 332 3346778 78888888763211 112568888875 23445444322233444444 4457788887777
Q ss_pred CeeE--EEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcC-CCcEEEEEEccCCCC--------------ce
Q 004866 337 RTYR--LCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDY-YSSTMRFAISSPVMP--------------DA 399 (726)
Q Consensus 337 g~~~--l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~ss~~~P--------------~~ 399 (726)
+... |+++++.++. ...+ ..++... ..+++ ++..+++.. +. .| ..
T Consensus 260 ~~~~~~l~~~d~~~g~---~~~l-------~~~~~~~------~~~s~~dg~~l~~~~-~~-~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 260 GQTDRVIYKANPETLE---NEEV-------MVMPPCS------HLMSNFDGSLMVGDG-CD-APVDVADADSYNIENDPF 321 (396)
T ss_dssp TTCCEEEEEECTTTCC---EEEE-------EECCSEE------EEEECSSSSEEEEEE-CC-C----------CCCCCCE
T ss_pred CCccceEEEEECCCCC---eEEe-------eeCCCCC------CCccCCCCceEEEec-CC-cceeeccccccccCCCCc
Confidence 7655 9999987542 1111 1223211 12345 677555433 22 44 78
Q ss_pred EEEEECCCCeEEEEEe
Q 004866 400 VVDYDLSYGKWNIIQQ 415 (726)
Q Consensus 400 ~~~~d~~~~~~~~~~~ 415 (726)
+|.+|+.+++.+.+..
T Consensus 322 i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 322 LYVLNTKAKSAQKLCK 337 (396)
T ss_dssp EEEEETTTTBCCEEEE
T ss_pred EEEEecccCceEEccC
Confidence 9999999888766654
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=139.07 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=89.0
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.||.++.+...-+ ...|+||++||..+.. ..|......| .+||.|+.+|+||+|.+... ....
T Consensus 17 ~~g~~l~~~~~g~------~~~~~vl~lHG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~--------~~~~ 79 (299)
T 3g9x_A 17 VLGERMHYVDVGP------RDGTPVLFLHGNPTSS--YLWRNIIPHV-APSHRCIAPDLIGMGKSDKP--------DLDY 79 (299)
T ss_dssp ETTEEEEEEEESC------SSSCCEEEECCTTCCG--GGGTTTHHHH-TTTSCEEEECCTTSTTSCCC--------CCCC
T ss_pred eCCeEEEEEecCC------CCCCEEEEECCCCccH--HHHHHHHHHH-ccCCEEEeeCCCCCCCCCCC--------CCcc
Confidence 3888887644311 1246899999976643 3566666666 46999999999999976432 1135
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 134 (299)
T 3g9x_A 80 FFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134 (299)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcc
Confidence 788888888877765 3456899999999999999999999999999999885443
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-13 Score=136.75 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=87.0
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHH
Q 004866 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIK 555 (726)
Q Consensus 476 ~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 555 (726)
.+|++...-+ .+ ..|.||++||.++.. ..|...+..|+++||.|+++|.||+|.+... ......+++
T Consensus 33 ~~l~y~~~G~----~~-~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~~~~~ 99 (297)
T 2xt0_A 33 LRMHYVDEGP----RD-AEHTFLCLHGEPSWS--FLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP------TDDAVYTFG 99 (297)
T ss_dssp CCEEEEEESC----TT-CSCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCHH
T ss_pred eEEEEEEccC----CC-CCCeEEEECCCCCcc--eeHHHHHHHHHhCCcEEEEeCCCCCCCCCCC------CCcccCCHH
Confidence 7877644211 11 146799999986643 5677888889999999999999999976421 001124667
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 556 DFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 556 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.+.+..+++.- +.+++.++||||||.+++.++.++|++++++|+..+..
T Consensus 100 ~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~ 150 (297)
T 2xt0_A 100 FHRRSLLAFLDAL--QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTAL 150 (297)
T ss_dssp HHHHHHHHHHHHH--TCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCC
T ss_pred HHHHHHHHHHHHh--CCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCC
Confidence 7766666666542 23689999999999999999999999999999988743
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=137.80 Aligned_cols=204 Identities=11% Similarity=0.039 Sum_probs=125.0
Q ss_pred CccEEEEEcCCCCCCCCccch----HHHHHHHHCCcEEEEEccCCC---------------------CCCCCcccccccc
Q 004866 493 QNPGLLHGHGAYGELLDKRWR----SELKSLLDRGWVVAFADVRGG---------------------GGGGKKWHHDGRR 547 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~----~~~~~l~~~G~~v~~~d~RG~---------------------g~~g~~~~~~~~~ 547 (726)
+.|+||++||..+.. ..|. .....|.++||.|+.+|.|+. |.+ ..|....
T Consensus 4 ~~~~vl~lHG~g~~~--~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~-~~w~~~~-- 78 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNG--KVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVN-RAWFYHS-- 78 (243)
T ss_dssp CCCEEEEECCTTCCH--HHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCC-EESSCCC--
T ss_pred cCceEEEeCCCCccH--HHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCC-cccccCC--
Confidence 468999999865432 2333 344566777999999999932 221 3343211
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCC------CceeEEEEeCCcccccccccCCCCCC
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP------DLFRAVVLEVPFLDATNTLLYPILPL 621 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~p~~d~~~~~~~~~~~~ 621 (726)
......|+.+++++|.+....+..+++|+|+|+||.+++.++.+++ ..+++++..+++....... ..+-
T Consensus 79 --~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~---~~~~ 153 (243)
T 1ycd_A 79 --EISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP---EHPG 153 (243)
T ss_dssp --SSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT---TSTT
T ss_pred --CCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc---cccc
Confidence 1123456666666666543334578999999999999999988643 2467888777765432110 0000
Q ss_pred ChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcC-CCCCCCcEEEEcCCC
Q 004866 622 IAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVREST-IYDPKRPILLNLTTD 700 (726)
Q Consensus 622 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~g 700 (726)
. ..+. +.+ ...+..+.. ++.|+|++||..|..||+.++.++++.+...+ ... ....++.+++|
T Consensus 154 ~----~~~~-----~~~-----~~~~~~~~~-~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~g 217 (243)
T 1ycd_A 154 E----LRIT-----EKF-----RDSFAVKPD-MKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNK-EKVLAYEHPGG 217 (243)
T ss_dssp C----EEEC-----GGG-----TTTTCCCTT-CCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCT-TTEEEEEESSS
T ss_pred c----cccc-----hhH-----HHhccCccc-CCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccc-cccEEEecCCC
Confidence 0 0000 000 012223343 78899999999999999999999999998751 100 01222367889
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 701 IVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 701 H~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|...... .....+.+||.+++.
T Consensus 218 H~~~~~~---~~~~~i~~fl~~~~~ 239 (243)
T 1ycd_A 218 HMVPNKK---DIIRPIVEQITSSLQ 239 (243)
T ss_dssp SSCCCCH---HHHHHHHHHHHHHHC
T ss_pred CcCCchH---HHHHHHHHHHHHhhh
Confidence 9764321 345567789988764
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=137.11 Aligned_cols=208 Identities=12% Similarity=-0.002 Sum_probs=124.1
Q ss_pred cEEEEEcCC-CCCCCCccchHHH-HHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 495 PGLLHGHGA-YGELLDKRWRSEL-KSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 495 P~vl~~hGg-~~~~~~~~~~~~~-~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
|.||++||. ++......|...+ ..|.+ +|.|+.+|+||+|.+.... ....+++++.+.+..++++ .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPGWGKSDSVV-------NSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTTSTTSCCCC-------CSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCCCCCCCCCC-------ccccCHHHHHHHHHHHHHH--hCC
Confidence 389999995 3322223455556 55554 5999999999999764321 1134678887777777754 234
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCC------------CCCCh---hhhcc-cCCCC--C
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPI------------LPLIA---ADYEE-FGYPG--D 634 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~------------~~~~~---~~~~~-~g~~~--~ 634 (726)
+++.++||||||.+++.++.++|++++++|+.+|............ .+... ..... +..+. .
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 7899999999999999999999999999999887542111000000 00000 00000 00110 1
Q ss_pred hhH--------------HHHHH-h--------cCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCC
Q 004866 635 IDD--------------FHAIR-N--------YSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 635 ~~~--------------~~~~~-~--------~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 691 (726)
++. ...+. . ......+.+ ++.|+|+|+|..|..||+..+.++++.+... +
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~------~ 259 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAE-IKAQTLIVWGRNDRFVPMDAGLRLLSGIAGS------E 259 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGG-CCSCEEEEEETTCSSSCTHHHHHHHHHSTTC------E
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhh-cCCCeEEEeeCCCCccCHHHHHHHHhhCCCc------E
Confidence 111 11000 0 011234444 7899999999999999999998888776532 2
Q ss_pred cEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 692 PILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
+.+++++||...- ++.......+.+||.
T Consensus 260 -~~~i~~~gH~~~~-e~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 260 -LHIFRDCGHWAQW-EHADAFNQLVLNFLA 287 (289)
T ss_dssp -EEEESSCCSCHHH-HTHHHHHHHHHHHHT
T ss_pred -EEEeCCCCCchhh-cCHHHHHHHHHHHhc
Confidence 2237899996322 122222333466764
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-15 Score=166.11 Aligned_cols=221 Identities=16% Similarity=0.108 Sum_probs=136.0
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchHHHHHHHHCC-cEEEEEccC-CCCCCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRSELKSLLDRG-WVVAFADVR-GGGGGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G-~~v~~~d~R-G~g~~g~~~~~~~~~~ 548 (726)
+.|+.. +.++.|+.. .++.|+||++|||.... ....+......|+++| ++|+.+||| |..+++..-... ...
T Consensus 79 ~edcL~--l~v~~P~~~--~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~ 153 (489)
T 1qe3_A 79 SEDCLY--VNVFAPDTP--SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY 153 (489)
T ss_dssp CSCCCE--EEEEEECSS--CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred CCCCCE--EEEEeCCCC--CCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence 456544 456778752 24589999999975321 1122223356677775 999999999 332332210000 112
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCcccccccccCCCCCCCh
Q 004866 549 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFLDATNTLLYPILPLIA 623 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d~~~~~~~~~~~~~~ 623 (726)
.+...+.|+.++++|+.++. ..|++||+|+|+|+||++++.++... +++|+++|+.+|..++.... .......
T Consensus 154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~--~~~~~~~ 231 (489)
T 1qe3_A 154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKE--QAASTAA 231 (489)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHH--HHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHH--HHHHHHH
Confidence 23346899999999998752 25999999999999999999888753 57999999999987443210 0000000
Q ss_pred hhhcccCCCCC-hh------HHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-
Q 004866 624 ADYEEFGYPGD-ID------DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL- 695 (726)
Q Consensus 624 ~~~~~~g~~~~-~~------~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~- 695 (726)
......|.+.+ .+ ..+.+...+++.+... ...|.+++++..|.+|.+.++.+++++++.++ .|+++
T Consensus 232 ~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~-~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~-----vp~~~g 305 (489)
T 1qe3_A 232 AFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEK-ENIFQLFFQPALDPKTLPEEPEKSIAEGAASG-----IPLLIG 305 (489)
T ss_dssp HHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTT-CCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTT-----CCEEEE
T ss_pred HHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccc-cccCCccceEeECCeecCcCHHHHHhcCCCCC-----CCEEEe
Confidence 01112343321 00 1122223333322211 33456778888898899999999988887776 46666
Q ss_pred -EcCCCCCCCc
Q 004866 696 -NLTTDIVEEN 705 (726)
Q Consensus 696 -~~~~gH~~~~ 705 (726)
..++||.+..
T Consensus 306 ~~~~Eg~~~~~ 316 (489)
T 1qe3_A 306 TTRDEGYLFFT 316 (489)
T ss_dssp EETTGGGGTCC
T ss_pred eecchhHhhcc
Confidence 8899997643
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=135.16 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=87.0
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
..++...||.++.+...-+ ...|.||++||+++......+ ...|..+||.|+++|.||+|.+...
T Consensus 13 ~~~~~~~~g~~l~y~~~G~------~~g~pvvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G~G~S~~~------ 77 (313)
T 1azw_A 13 QGSLKVDDRHTLYFEQCGN------PHGKPVVMLHGGPGGGCNDKM---RRFHDPAKYRIVLFDQRGSGRSTPH------ 77 (313)
T ss_dssp EEEEECSSSCEEEEEEEEC------TTSEEEEEECSTTTTCCCGGG---GGGSCTTTEEEEEECCTTSTTSBST------
T ss_pred cceEEcCCCCEEEEEecCC------CCCCeEEEECCCCCccccHHH---HHhcCcCcceEEEECCCCCcCCCCC------
Confidence 3456667898887543321 123568999998764422111 2233357999999999999976321
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
......+++++.+.+..++++- .-+++.++||||||.+++.++.++|++++++|+.++..
T Consensus 78 ~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~~ 137 (313)
T 1azw_A 78 ADLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cccccccHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEecccc
Confidence 1112346777777777777642 33689999999999999999999999999999987653
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-13 Score=137.10 Aligned_cols=225 Identities=13% Similarity=0.026 Sum_probs=133.1
Q ss_pred CCCC-cEEEEEEEEcCCCCCCCCccEEEEEcCC-CCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 472 SHDG-ISVPLTIIYSPKYKKENQNPGLLHGHGA-YGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 472 s~dG-~~i~~~l~~p~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
..+| .+|++... + +++.|.||++||. ++......|...+..|+++ |.|+++|.||+|.+...- .
T Consensus 19 ~~~g~~~l~y~~~---G---~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~-------~ 84 (291)
T 2wue_A 19 DVDGPLKLHYHEA---G---VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGYGHSDKRA-------E 84 (291)
T ss_dssp ESSSEEEEEEEEE---C---TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTTSTTSCCCS-------C
T ss_pred EeCCcEEEEEEec---C---CCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCCCCCCCCCC-------C
Confidence 3478 88775432 2 1334689999996 5433334566666777665 999999999999764321 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc--------------
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL-------------- 615 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-------------- 615 (726)
...+++++.+.+..++++ .+.+++.|+||||||.+++.++.++|++++++|+.+|.........
T Consensus 85 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
T 2wue_A 85 HGQFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFS 162 (291)
T ss_dssp CSSHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHh
Confidence 124677777777666654 2336899999999999999999999999999999987542110000
Q ss_pred -CCCCCCChhhhccc-CCC--CCh-------------hHHHHHHh----c-C-----cc--cccccCCCCCeEEEEecCC
Q 004866 616 -YPILPLIAADYEEF-GYP--GDI-------------DDFHAIRN----Y-S-----PY--DNIQKDVLYPAVLVTSSFN 666 (726)
Q Consensus 616 -~~~~~~~~~~~~~~-g~~--~~~-------------~~~~~~~~----~-s-----p~--~~i~~~~~~P~lli~g~~D 666 (726)
.............+ ..+ ..+ +....+.. + + +. ..+.+ ++.|+|+|+|..|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lvi~G~~D 241 (291)
T 2wue_A 163 VAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYR-LRQPVLLIWGRED 241 (291)
T ss_dssp HSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGG-CCSCEEEEEETTC
T ss_pred ccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhh-CCCCeEEEecCCC
Confidence 00000000000000 011 001 11111110 0 0 11 34444 8999999999999
Q ss_pred CCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 667 TRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 667 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
..+|+..+.++++.+... +.+ +++++||...- ++.......+.+||.
T Consensus 242 ~~~~~~~~~~~~~~~p~~------~~~-~i~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (291)
T 2wue_A 242 RVNPLDGALVALKTIPRA------QLH-VFGQCGHWVQV-EKFDEFNKLTIEFLG 288 (291)
T ss_dssp SSSCGGGGHHHHHHSTTE------EEE-EESSCCSCHHH-HTHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHCCCC------eEE-EeCCCCCChhh-hCHHHHHHHHHHHHh
Confidence 999998888887766432 222 27899996322 122222333456764
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=143.30 Aligned_cols=207 Identities=16% Similarity=0.134 Sum_probs=125.4
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|+||++||..+.. ..|......| ||.|+.+|+||+|.+... .....+++++.+.+..+++. .+.+
T Consensus 81 ~~~vv~~hG~~~~~--~~~~~~~~~l---g~~Vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~ 146 (330)
T 3p2m_A 81 APRVIFLHGGGQNA--HTWDTVIVGL---GEPALAVDLPGHGHSAWR-------EDGNYSPQLNSETLAPVLRE--LAPG 146 (330)
T ss_dssp CCSEEEECCTTCCG--GGGHHHHHHS---CCCEEEECCTTSTTSCCC-------SSCBCCHHHHHHHHHHHHHH--SSTT
T ss_pred CCeEEEECCCCCcc--chHHHHHHHc---CCeEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHH--hCCC
Confidence 47899999986643 3466555555 999999999999875321 12335677777777777754 3457
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc---cC------------CCCCCChhhhccc--CCC-CCh
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL---LY------------PILPLIAADYEEF--GYP-GDI 635 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~---~~------------~~~~~~~~~~~~~--g~~-~~~ 635 (726)
++.++|+|+||.+++.++.++|++++++|+.+|........ .. ...+........+ ..+ ...
T Consensus 147 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
T 3p2m_A 147 AEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDV 226 (330)
T ss_dssp CCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSCH
T ss_pred CcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCH
Confidence 89999999999999999999999999999998764321100 00 0000000000000 001 111
Q ss_pred hHH-HHHHhc-------------Cc----------ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCC
Q 004866 636 DDF-HAIRNY-------------SP----------YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691 (726)
Q Consensus 636 ~~~-~~~~~~-------------sp----------~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 691 (726)
+.. ..+... .. ...+.+ ++.|+|+|+|+.|..||+..+.++++.+... +
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~PvLii~G~~D~~v~~~~~~~l~~~~~~~------~ 299 (330)
T 3p2m_A 227 KSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDA-LSAPITLVRGGSSGFVTDQDTAELHRRATHF------R 299 (330)
T ss_dssp HHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHH-CCSCEEEEEETTCCSSCHHHHHHHHHHCSSE------E
T ss_pred HHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhh-CCCCEEEEEeCCCCCCCHHHHHHHHHhCCCC------e
Confidence 111 111100 00 012333 7899999999999999999998888776432 2
Q ss_pred cEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 692 PILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 692 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.+.+++++||.... ++..+....+.+||.+
T Consensus 300 ~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 300 GVHIVEKSGHSVQS-DQPRALIEIVRGVLDT 329 (330)
T ss_dssp EEEEETTCCSCHHH-HCHHHHHHHHHHHTTC
T ss_pred eEEEeCCCCCCcch-hCHHHHHHHHHHHHhc
Confidence 12337899996422 2222233345677643
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-13 Score=136.88 Aligned_cols=118 Identities=16% Similarity=0.081 Sum_probs=87.6
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHH
Q 004866 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIK 555 (726)
Q Consensus 476 ~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 555 (726)
.+|++...-++ + +.|.||++||.++.. ..|...+..|+++||.|+++|.||+|.+... ......+++
T Consensus 34 ~~l~y~~~G~~----~-~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~y~~~ 100 (310)
T 1b6g_A 34 LRAHYLDEGNS----D-AEDVFLCLHGEPTWS--YLYRKMIPVFAESGARVIAPDFFGFGKSDKP------VDEEDYTFE 100 (310)
T ss_dssp CEEEEEEEECT----T-CSCEEEECCCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCHH
T ss_pred eEEEEEEeCCC----C-CCCEEEEECCCCCch--hhHHHHHHHHHhCCCeEEEeCCCCCCCCCCC------CCcCCcCHH
Confidence 78876443221 1 147899999987643 4677888899999999999999999986321 101224677
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 556 DFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 556 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.+.+..++++- +-+++.++||||||.+++.++.++|++++++|+..+..
T Consensus 101 ~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~ 151 (310)
T 1b6g_A 101 FHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXL 151 (310)
T ss_dssp HHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHc--CCCCEEEEEcChHHHHHHHHHHhChHhheEEEEecccc
Confidence 7776666666542 23689999999999999999999999999999988743
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-13 Score=126.58 Aligned_cols=172 Identities=10% Similarity=0.021 Sum_probs=118.1
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
+.|.||++||..+... ..|......++..++ .++.+|.+ ...++++.+.+..++++ .+
T Consensus 16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~~~---~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPHWQ---RIRQREWY---------------QADLDRWVLAIRRELSV--CT- 73 (191)
T ss_dssp TTCEEEEECCTTCCCT-TSHHHHHHHHCTTSE---ECCCSCCS---------------SCCHHHHHHHHHHHHHT--CS-
T ss_pred CCceEEEECCCCCCch-hhHHHHHHHhcCCeE---EEeccCCC---------------CcCHHHHHHHHHHHHHh--cC-
Confidence 4588999999765432 245444444334443 45666643 23678888888777765 23
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCccccccc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQK 652 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~ 652 (726)
+++.++|+|+||.+++.++.++|++++++|+.+|.......+ +.. ..+.+
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~-----------------~~~-------------~~~~~ 123 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI-----------------DDR-------------IQASP 123 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC-----------------TTT-------------SCSSC
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC-----------------ccc-------------ccccc
Confidence 799999999999999999999999999999999976543110 000 22333
Q ss_pred CCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCch--hhHHHHHHHHHHHHHHhhc
Q 004866 653 DVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENR--YLQCKESALETAFLIKMME 725 (726)
Q Consensus 653 ~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~~l~ 725 (726)
++.|+++++|..|..||+.++.++++.+ +. + +..++++||..... ...-+......+||.+..+
T Consensus 124 -~~~P~lii~g~~D~~~~~~~~~~~~~~~---~~----~-~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~~~ 189 (191)
T 3bdv_A 124 -LSVPTLTFASHNDPLMSFTRAQYWAQAW---DS----E-LVDVGEAGHINAEAGFGPWEYGLKRLAEFSEILIP 189 (191)
T ss_dssp -CSSCEEEEECSSBTTBCHHHHHHHHHHH---TC----E-EEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTTCS
T ss_pred -CCCCEEEEecCCCCcCCHHHHHHHHHhc---CC----c-EEEeCCCCcccccccchhHHHHHHHHHHHHHHhcc
Confidence 6789999999999999999999998887 21 2 23378999975431 1223334556788876544
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-13 Score=139.71 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
.+|.++.+...-+++ .+.+.+.||++||+++.. ..|...+..|++ .||.|+.+|.||+|.+...-. .....
T Consensus 35 ~~g~~l~y~~~G~~~--~~~~g~plvllHG~~~~~--~~w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~~----~~~~~ 106 (330)
T 3nwo_A 35 FGDHETWVQVTTPEN--AQPHALPLIVLHGGPGMA--HNYVANIAALADETGRTVIHYDQVGCGNSTHLPD----APADF 106 (330)
T ss_dssp ETTEEEEEEEECCSS--CCTTCCCEEEECCTTTCC--SGGGGGGGGHHHHHTCCEEEECCTTSTTSCCCTT----SCGGG
T ss_pred ecCcEEEEEEecCcc--CCCCCCcEEEECCCCCCc--hhHHHHHHHhccccCcEEEEECCCCCCCCCCCCC----Ccccc
Confidence 378888776554321 111122578889987754 346666667776 699999999999997643100 00112
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+++++.+.+..+++.- ..+++.|+|+||||.+++.++.++|++++++|+..+..
T Consensus 107 ~~~~~~a~dl~~ll~~l--g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~ 161 (330)
T 3nwo_A 107 WTPQLFVDEFHAVCTAL--GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPA 161 (330)
T ss_dssp CCHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCS
T ss_pred ccHHHHHHHHHHHHHHc--CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCc
Confidence 34555555555554431 23689999999999999999999999999999887654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=149.08 Aligned_cols=251 Identities=10% Similarity=0.030 Sum_probs=152.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC---ceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG---ALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg---~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++|+++.. + +|+++|++++ +...++. ......++|||||+.|+|... ..||++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~--~----~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~------~~i~~~ 177 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG--G----ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG------RNLWVI 177 (741)
T ss_dssp ESCCCEECTTSSEEEEEET--T----EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET------TEEEEE
T ss_pred CcceeEECCCCCEEEEEeC--C----cEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC------CcEEEE
Confidence 4677899999999999864 2 6999999999 6665544 345678999999999999852 279999
Q ss_pred EcCCCCceeEEeeecCCce---------------EEEEEEcCCCcEEEEEEcCC--------------------------
Q 004866 199 IIGSTDEDALLLEESNENV---------------YVNIRHTKDFHFVCVHTFST-------------------------- 237 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~---------------~~~~~~s~Dg~~l~~~~~~~-------------------------- 237 (726)
++.++....+... ..... ...+.|||||++|++.+...
T Consensus 178 d~~~g~~~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 178 DLASGRQMQLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ETTTTEEEECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred ecCCCCEEEeccC-CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 9987643222211 11100 12478999999999886543
Q ss_pred ----CceEEEEEeCCC-CCCCeEEeecc--CCc--eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCce
Q 004866 238 ----TSSKVFLINAAD-PFSGLTLIWEC--EGL--AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWE 308 (726)
Q Consensus 238 ----~~~~l~~~d~~~-~~~~~~~l~~~--~~~--~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (726)
....||++|+.+ +. .+.+... ... ....+ +||+.|++.+..... .+..|+.+++. + +...
T Consensus 257 g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~----~~~~i~~~d~~-~---g~~~ 325 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQ--TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ----KKLDLVEVTLA-S---NQQR 325 (741)
T ss_dssp TSCCCEEEEEEECSSTTCC--CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS----SEEEEEEEETT-T---CCEE
T ss_pred CCCCCeeEEEEEECCCCCc--eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC----CeEEEEEEECC-C---CceE
Confidence 123899999976 53 3333322 111 23467 999999887752221 24678888876 2 3344
Q ss_pred EEeecCCCc---eEEE--EeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccC-CCceeeeecCCCCcC
Q 004866 309 SVFIDDQGL---VVED--VDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL-PKYVSQIVPGPNYDY 382 (726)
Q Consensus 309 ~v~~~~~~~---~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~ 382 (726)
.++...... .+.. +...++ +++....+|..+|+.++++.+ .. .+.- ...+..+. .+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~----~~--------~l~~~~~~v~~~~---~~s~ 389 (741)
T 2ecf_A 326 VLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK----AA--------ALTHGNWSVDELL---AVDE 389 (741)
T ss_dssp EEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC----EE--------ESCCSSSCEEEEE---EEET
T ss_pred EEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC----ee--------eeeecceEEEeEe---EEeC
Confidence 444332211 1122 333344 777777788889999886421 11 1111 11122211 2356
Q ss_pred CCcEEEEEEccCCC--CceEEEEECCCCeEEEEE
Q 004866 383 YSSTMRFAISSPVM--PDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 383 ~~~~~~~~~ss~~~--P~~~~~~d~~~~~~~~~~ 414 (726)
+++.++++.+. .. -..+|.++...+..+.|+
T Consensus 390 dg~~l~~~~~~-~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 390 KAGLAYFRAGI-ESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTTEEEEEECS-SCTTCBEEEEEETTCCCCEECC
T ss_pred CCCEEEEEEeC-CCCceEEEEEEEcCCCCeeecc
Confidence 77777666543 33 335777777555455543
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=139.96 Aligned_cols=121 Identities=13% Similarity=0.030 Sum_probs=87.7
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..+|.+|.+... ++.|+||++||..+.. ..|......|++ +|.|+.+|+||+|.+...-. .....
T Consensus 14 ~~~g~~l~~~~~--------g~~~~vv~lHG~~~~~--~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~----~~~~~ 78 (297)
T 2qvb_A 14 EIAGKRMAYIDE--------GKGDAIVFQHGNPTSS--YLWRNIMPHLEG-LGRLVACDLIGMGASDKLSP----SGPDR 78 (297)
T ss_dssp EETTEEEEEEEE--------SSSSEEEEECCTTCCG--GGGTTTGGGGTT-SSEEEEECCTTSTTSCCCSS----CSTTS
T ss_pred EECCEEEEEEec--------CCCCeEEEECCCCchH--HHHHHHHHHHhh-cCeEEEEcCCCCCCCCCCCC----ccccC
Confidence 347888775432 1248999999976643 346665666655 59999999999997643210 01122
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 552 NSIKDFISCARFLIEKEIVKE-HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
.+++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+.+|...
T Consensus 79 ~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 135 (297)
T 2qvb_A 79 YSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT 135 (297)
T ss_dssp SCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCS
T ss_pred cCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccC
Confidence 4677777777777654 244 7899999999999999999999999999999988764
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-13 Score=141.07 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..+|.++++...-|++ ...|+||++||..+.. ..|......|+++||.|+.+|+||+|.+...- ....
T Consensus 9 ~~~g~~l~y~~~G~~~----~~~~~vv~~hG~~~~~--~~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~------~~~~ 76 (356)
T 2e3j_A 9 NCRGTRIHAVADSPPD----QQGPLVVLLHGFPESW--YSWRHQIPALAGAGYRVVAIDQRGYGRSSKYR------VQKA 76 (356)
T ss_dssp EETTEEEEEEEECCTT----CCSCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCCCC------SGGG
T ss_pred ccCCeEEEEEEecCCC----CCCCEEEEECCCCCcH--HHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCC------cccc
Confidence 3578888876543321 2458899999986643 45777788899999999999999998753221 1112
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.++.++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 77 YRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 3566666666655543 345799999999999999999999999999999987654
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-13 Score=137.65 Aligned_cols=122 Identities=22% Similarity=0.236 Sum_probs=86.9
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..+|.+|.+... + ..|.||++||.++.. ..|...+..|+++||.|+++|.||+|.+...-. .....
T Consensus 17 ~~~g~~l~y~~~---G-----~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~----~~~~~ 82 (328)
T 2cjp_A 17 AVNGLNMHLAEL---G-----EGPTILFIHGFPELW--YSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPL----NDPSK 82 (328)
T ss_dssp EETTEEEEEEEE---C-----SSSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTCBCCCT----TCGGG
T ss_pred cCCCcEEEEEEc---C-----CCCEEEEECCCCCch--HHHHHHHHHHHHCCcEEEEECCCCCCCCCCcCc----CCccc
Confidence 347888775432 1 247899999987643 468888888988999999999999997632100 01112
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
.+++++.+.+..+++.-..+.+++.++||||||.+++.++.++|++++++|+.++.
T Consensus 83 ~~~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 83 FSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp GSHHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 35566655555555431112478999999999999999999999999999987743
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=133.63 Aligned_cols=104 Identities=23% Similarity=0.241 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.||++||.++.. ..|...+..|.++||.|+.+|.||+|.+...- ....+++++.+.+..+++.-. ..+
T Consensus 4 ~~~vvllHG~~~~~--~~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHGG--WSWYKLKPLLEAAGHKVTALDLAASGTDLRKI-------EELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG-------GGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCCc--chHHHHHHHHHhCCCEEEEecCCCCCCCccCc-------ccccCHHHHHHHHHHHHHHhc-cCC
Confidence 36799999976533 45777888898999999999999999764221 112467888777777776421 136
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~ 107 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAF 107 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEecc
Confidence 8999999999999999999999999999988764
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=138.71 Aligned_cols=122 Identities=11% Similarity=-0.002 Sum_probs=88.9
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 471 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 471 ~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
...||.+|.+... ++.|+||++||..+.. ..|......|+++ |.|+.+|+||+|.+...- .....
T Consensus 14 ~~~~g~~l~~~~~--------g~~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~----~~~~~ 78 (302)
T 1mj5_A 14 IEIKGRRMAYIDE--------GTGDPILFQHGNPTSS--YLWRNIMPHCAGL-GRLIACDLIGMGDSDKLD----PSGPE 78 (302)
T ss_dssp EEETTEEEEEEEE--------SCSSEEEEECCTTCCG--GGGTTTGGGGTTS-SEEEEECCTTSTTSCCCS----SCSTT
T ss_pred EEECCEEEEEEEc--------CCCCEEEEECCCCCch--hhhHHHHHHhccC-CeEEEEcCCCCCCCCCCC----CCCcc
Confidence 3458888775432 1248899999976643 3466666666555 899999999999764321 00112
Q ss_pred CCcHHHHHHHHHHHHHcCCCCC-CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 551 LNSIKDFISCARFLIEKEIVKE-HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
..+++|+.+.+..++++ .+. +++.++|+|+||.+++.++.++|++++++|+.+|...
T Consensus 79 ~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 136 (302)
T 1mj5_A 79 RYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAM 136 (302)
T ss_dssp SSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCS
T ss_pred cccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCC
Confidence 25778888877777765 244 7899999999999999999999999999999988764
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=143.58 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=80.8
Q ss_pred ccEEEEEcCCCCCCCCc-------cchHHHH---HHHHCCcEEEEEccCC-CCCCCCccc-cc--cc---ccCCCCcHHH
Q 004866 494 NPGLLHGHGAYGELLDK-------RWRSELK---SLLDRGWVVAFADVRG-GGGGGKKWH-HD--GR---RTKKLNSIKD 556 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~-------~~~~~~~---~l~~~G~~v~~~d~RG-~g~~g~~~~-~~--~~---~~~~~~~~~D 556 (726)
.|+||++||..+..... .|...+. .|+++||.|+++|+|| +|++...-. .. +. ......+++|
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQD 138 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHH
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHH
Confidence 58999999987654320 1554442 3667899999999999 454421100 00 00 0011357899
Q ss_pred HHHHHHHHHHcCCCCCCcEE-EEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 557 FISCARFLIEKEIVKEHKLA-GWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 557 ~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
+.+.+..+++. .+.+++. ++|+||||.+++.++.++|++++++|+.+|...
T Consensus 139 ~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 190 (377)
T 2b61_A 139 IVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIY 190 (377)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSS
T ss_pred HHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCcc
Confidence 98888888864 3446887 999999999999999999999999999998654
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.6e-13 Score=133.83 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=80.8
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.||++||..+.. ..|...+..|++. |.|+++|+||+|.+... . ....+++++.+.+..++++ ...+
T Consensus 16 g~~vvllHG~~~~~--~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~~~------~-~~~~~~~~~~~dl~~~l~~--l~~~ 83 (269)
T 2xmz_A 16 NQVLVFLHGFLSDS--RTYHNHIEKFTDN-YHVITIDLPGHGEDQSS------M-DETWNFDYITTLLDRILDK--YKDK 83 (269)
T ss_dssp SEEEEEECCTTCCG--GGGTTTHHHHHTT-SEEEEECCTTSTTCCCC------T-TSCCCHHHHHHHHHHHHGG--GTTS
T ss_pred CCeEEEEcCCCCcH--HHHHHHHHHHhhc-CeEEEecCCCCCCCCCC------C-CCccCHHHHHHHHHHHHHH--cCCC
Confidence 35699999986643 4577777777664 99999999999976432 0 1134788888877777765 3447
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
++.++||||||.+++.++.++|++++++|+.+|...
T Consensus 84 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 119 (269)
T 2xmz_A 84 SITLFGYSMGGRVALYYAINGHIPISNLILESTSPG 119 (269)
T ss_dssp EEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSC
T ss_pred cEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcc
Confidence 899999999999999999999999999999987543
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=132.91 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=81.1
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
..|.||++||..+.. ..|...+..|.++||.|+.+|.||+|.+...- ....+++++.+.+..++++-- ..
T Consensus 9 ~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~ 78 (264)
T 2wfl_A 9 QQKHFVLVHGGCLGA--WIWYKLKPLLESAGHKVTAVDLSAAGINPRRL-------DEIHTFRDYSEPLMEVMASIP-PD 78 (264)
T ss_dssp CCCEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHHSC-TT
T ss_pred CCCeEEEECCCcccc--chHHHHHHHHHhCCCEEEEeecCCCCCCCCCc-------ccccCHHHHHHHHHHHHHHhC-CC
Confidence 457899999976533 45788888898999999999999999764321 112467777777666665421 12
Q ss_pred CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 79 ~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 79 EKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp CCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred CCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 68999999999999999999999999999988764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-12 Score=147.73 Aligned_cols=212 Identities=12% Similarity=0.023 Sum_probs=137.9
Q ss_pred eceeeCCCCCEEEEEEeCCC-------------------------------CcEEEEEEEECCC---C---ceecccc--
Q 004866 125 ELSEVSPDHKFLAYTMYDKD-------------------------------NDYFTLSVRNLNS---G---ALCSKPQ-- 165 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g-------------------------------~e~~~l~v~dl~t---g---~~~~~~~-- 165 (726)
..+.|||||++|||.....+ +...+|+++|+++ | +...+..
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 35789999999999864322 2234799999999 8 4444432
Q ss_pred -----ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-------ceeEEeeecCCceE-----EEEEEcCCCc
Q 004866 166 -----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-------EDALLLEESNENVY-----VNIRHTKDFH 228 (726)
Q Consensus 166 -----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-------~~~lv~~~~d~~~~-----~~~~~s~Dg~ 228 (726)
...+..++|||||+.+++.... ......|++.++.+++ ... ++++....+. ..+.|||||+
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r-~~~~~~i~~~d~~tg~~~~~~~~~~~-l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRR-IQNYSVMDICDYDESSGRWNCLVARQ-HIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEES-STTEEEEEEEEEETTTTEEEECGGGC-EEEECSSSCSSSSSCCCCEECTTSS
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCC-CCCEEEEEEEECCCCccccceeEEEE-eeeccCCceEccCcCCCceEcCCCC
Confidence 1235678999999977776443 2334579999987764 222 2223332221 2478999999
Q ss_pred EEE-EEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecC--cccCCCCCCeEEEEeeCCCCCCCC
Q 004866 229 FVC-VHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDA--AKEGQEADNHYLLRCPVDASFPSR 305 (726)
Q Consensus 229 ~l~-~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~--~~~~~~~~~~~l~~~~~~~~~~~~ 305 (726)
.|+ +.+.+.+..+||++|+++ +..+.++.....+...+..|++.+||.++. +.. ....|++++++ . .
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~--~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~----~~~~ly~v~~~-g---~ 401 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDK--KDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMP----GGRNLYKIQLI-D---Y 401 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTC--SSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCT----TCBEEEEEETT-E---E
T ss_pred EEEEEEEcCCCceEEEEEECCC--CceEecccCCEEEEEEEEEeCCEEEEEEecCCCCC----ceeEEEEEECC-C---C
Confidence 998 666677779999999987 556777766555544455679999999987 332 25789999886 2 1
Q ss_pred CceEEeecC-----CCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 306 TWESVFIDD-----QGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 306 ~~~~v~~~~-----~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
.-+..+... ....-..++..++++++.....+.+.+++++...
T Consensus 402 ~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~ 449 (740)
T 4a5s_A 402 TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (740)
T ss_dssp EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence 112122211 1222234455567788887776677888887653
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=146.40 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=91.4
Q ss_pred EEEEECCCCcEEEEEE-EEcC-CCCCCCCccEEEEEcCCCCCCCCc-cchHHHH---HHHHCCcEEEEEccCCC--CCCC
Q 004866 467 QYDVPSHDGISVPLTI-IYSP-KYKKENQNPGLLHGHGAYGELLDK-RWRSELK---SLLDRGWVVAFADVRGG--GGGG 538 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l-~~p~-~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~---~l~~~G~~v~~~d~RG~--g~~g 538 (726)
.-.+...+|..+.+.- .|.. +.....+.|+||++||..+..... .|...+. .|+++||.|+++|+||+ |.++
T Consensus 80 ~~~~~~~~g~~~~g~~l~y~~~G~~~~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~ 159 (444)
T 2vat_A 80 ISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAG 159 (444)
T ss_dssp EEEEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSS
T ss_pred cCCeecCCCCEecceeEEEEEecCCCCCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCC
Confidence 3445667777665532 2211 111112358999999987654321 1554443 46678999999999994 5443
Q ss_pred Ccccccccc-------cCCCCcHHHHHHHHHHHHHcCCCCCCc-EEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 539 KKWHHDGRR-------TKKLNSIKDFISCARFLIEKEIVKEHK-LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 539 ~~~~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
..-.....+ .....+++|+.+.+..+++. ...++ +.++||||||.+++.++.++|++++++|+.++...
T Consensus 160 ~~~~~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 160 PCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp TTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred CCCCCcccccccccccccccccHHHHHHHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence 210000000 01124788888888777764 23467 99999999999999999999999999999988754
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=144.63 Aligned_cols=113 Identities=16% Similarity=0.068 Sum_probs=81.2
Q ss_pred CCccEEEEEcCCCCCCCC---ccch-----------HHHHHHHHCCcEEEEEccCCCCCCCCcccccccc---cCC-CCc
Q 004866 492 NQNPGLLHGHGAYGELLD---KRWR-----------SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR---TKK-LNS 553 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~---~~~~-----------~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~---~~~-~~~ 553 (726)
++.|+||++||+.+.... ..|. .....|+++||.|+.+|+||+|.+...-.. ... ... ...
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~-~~~~~~~~~~~~~ 126 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDR-QLSFTANWGWSTW 126 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGG-GGGGGTTCSHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCccccc-ccccccCCcHHHH
Confidence 346899999998765320 1233 567889999999999999999876422110 000 111 123
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCc
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPF 607 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~ 607 (726)
.+|+.++++++.++ .+.+++.++|+|+||.+++.++.++ |++++++|+.++.
T Consensus 127 ~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~ 179 (354)
T 2rau_A 127 ISDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGG 179 (354)
T ss_dssp HHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCS
T ss_pred HHHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEeccc
Confidence 56777788887664 3457999999999999999999988 9999999998543
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=142.23 Aligned_cols=223 Identities=12% Similarity=0.010 Sum_probs=135.8
Q ss_pred CceEEEEEEECC-CCcEEEEEEEEcCCCCC-CCCccEEEEEcCCCCCCCCccchHHHHHHHH------CCcEEEEEccCC
Q 004866 462 FYSCEQYDVPSH-DGISVPLTIIYSPKYKK-ENQNPGLLHGHGAYGELLDKRWRSELKSLLD------RGWVVAFADVRG 533 (726)
Q Consensus 462 ~~~~~~~~~~s~-dG~~i~~~l~~p~~~~~-~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~------~G~~v~~~d~RG 533 (726)
..+.+.+++.|. -|.+..++|+.|+++.+ ++++|+|++.||... . .........+.. .+++|+.++...
T Consensus 9 ~~~v~~~~~~S~~l~~~r~~~VylP~~y~~~~~~yPVlylldG~~~--f-~~~~~~~~~l~~~~~~~~~~~IvV~i~~~~ 85 (331)
T 3gff_A 9 AVEYQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQ--F-DHMASLLQFLSQGTMPQIPKVIIVGIHNTN 85 (331)
T ss_dssp --CEEEEEEEETTTTEEEEEEEECCTTGGGSCCCEEEEEESSHHHH--H-HHHHHHHHHHTCSSSCSSCCCEEEEECCSS
T ss_pred CceEEEEEEEecCCCCeEEEEEEeCCCCCCCCCCccEEEEecChhh--h-HHHHHHHHHHHhhhhcCCCCEEEEEECCCC
Confidence 445667777775 47889999999998765 678999999999421 0 001122334432 368888887521
Q ss_pred CCCCCCccc---c----cc-------cccCCCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc
Q 004866 534 GGGGGKKWH---H----DG-------RRTKKLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597 (726)
Q Consensus 534 ~g~~g~~~~---~----~~-------~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~ 597 (726)
...++. . .| ....+...+.+++ +.+.++.++-.+++.| +|+|+||||++++.++.++|++
T Consensus 86 ---R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~ 161 (331)
T 3gff_A 86 ---RMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPL 161 (331)
T ss_dssp ---HHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSS
T ss_pred ---cccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchh
Confidence 111110 0 00 0012223455554 3455555554556655 8999999999999999999999
Q ss_pred eeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCC-------CcC
Q 004866 598 FRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNT-------RFG 670 (726)
Q Consensus 598 f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~-------~V~ 670 (726)
|+++++.+|.+.+.. . ...+.+.+. +..... ...|+++.+|..|. +++
T Consensus 162 F~~~~~~S~~~w~~~-------------------~---~~~~~~~~~--~~~~~~-~~~~l~l~~G~~d~~~~~~~~~~~ 216 (331)
T 3gff_A 162 FSAYLALDTSLWFDS-------------------P---HYLTLLEER--VVKGDF-KQKQLFMAIANNPLSPGFGVSSYH 216 (331)
T ss_dssp CSEEEEESCCTTTTT-------------------T---HHHHHHHHH--HHHCCC-SSEEEEEEECCCSEETTTEECCHH
T ss_pred hheeeEeCchhcCCh-------------------H---HHHHHHHHH--hhcccC-CCCeEEEEeCCCCCCCccchHHHH
Confidence 999999999753211 0 011111110 110111 34678888998886 788
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 671 VWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 671 ~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
..++.+++++|++.+.. ...+.+ +++++|+... .....+.+.||..
T Consensus 217 ~~~~~~l~~~Lk~~~~~--g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~ 264 (331)
T 3gff_A 217 KDLNLAFADKLTKLAPK--GLGFMAKYYPEETHQSVS----HIGLYDGIRHLFK 264 (331)
T ss_dssp HHHHHHHHHHHHHHCCT--TEEEEEEECTTCCTTTHH----HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhccCC--CceEEEEECCCCCccccH----HHHHHHHHHHHHh
Confidence 88999999999987421 023333 8899997433 3344555666654
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.4e-13 Score=133.82 Aligned_cols=212 Identities=12% Similarity=0.058 Sum_probs=125.3
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||..+.. ..|......|++ +|.|+.+|+||+|.+...-.. .....+++++.+.+..+++. .+.++
T Consensus 21 ~~vvllHG~~~~~--~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~----~~~~~~~~~~a~dl~~~l~~--l~~~~ 91 (271)
T 1wom_A 21 ASIMFAPGFGCDQ--SVWNAVAPAFEE-DHRVILFDYVGSGHSDLRAYD----LNRYQTLDGYAQDVLDVCEA--LDLKE 91 (271)
T ss_dssp SEEEEECCTTCCG--GGGTTTGGGGTT-TSEEEECCCSCCSSSCCTTCC----TTGGGSHHHHHHHHHHHHHH--TTCSC
T ss_pred CcEEEEcCCCCch--hhHHHHHHHHHh-cCeEEEECCCCCCCCCCCccc----ccccccHHHHHHHHHHHHHH--cCCCC
Confidence 7899999965533 456666666654 799999999999976432100 01123566666666656553 23478
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc--cCCCCCC-------------Chhhhc-----ccCCCCC
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--LYPILPL-------------IAADYE-----EFGYPGD 634 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~--~~~~~~~-------------~~~~~~-----~~g~~~~ 634 (726)
+.++||||||.+++.++.++|++++++|+.+|........ ....... ...+.. .++.+..
T Consensus 92 ~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (271)
T 1wom_A 92 TVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDR 171 (271)
T ss_dssp EEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTTC
T ss_pred eEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999988753211000 0000000 000000 0122221
Q ss_pred hhHHHH----HHhc---------------CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE
Q 004866 635 IDDFHA----IRNY---------------SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL 695 (726)
Q Consensus 635 ~~~~~~----~~~~---------------sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 695 (726)
++..+. +... .....+.+ ++.|+|+|+|..|..+|+..+..+.+.+... +.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~~------~~~~- 243 (271)
T 1wom_A 172 PEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSK-VTVPSLILQCADDIIAPATVGKYMHQHLPYS------SLKQ- 243 (271)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTT-CCSCEEEEEEETCSSSCHHHHHHHHHHSSSE------EEEE-
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccc-cCCCEEEEEcCCCCcCCHHHHHHHHHHCCCC------EEEE-
Confidence 111111 1111 11122344 8899999999999999998888777666432 2222
Q ss_pred EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 696 NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 696 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
.+++||...- ++..+....+.+||.+++
T Consensus 244 i~~~gH~~~~-e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 244 MEARGHCPHM-SHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp EEEESSCHHH-HCHHHHHHHHHHHHHHHC
T ss_pred eCCCCcCccc-cCHHHHHHHHHHHHHhcC
Confidence 6899996322 222223344568887753
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=134.78 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=87.4
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
...+.+.||.+|++...-+++ +.|.||++||..+.. ..|...+..|++ ||.|+.+|+||+|.+...
T Consensus 7 ~~~~~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~~------ 72 (285)
T 3bwx_A 7 DRYWTSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRNA--RDFEDLATRLAG-DWRVLCPEMRGRGDSDYA------ 72 (285)
T ss_dssp EEEEECTTSCEEEEEEECBCT-----TSCCEEEECCTTCCG--GGGHHHHHHHBB-TBCEEEECCTTBTTSCCC------
T ss_pred cCeeecCCCceEEEEEcCCCC-----CCCcEEEECCCCcch--hhHHHHHHHhhc-CCEEEeecCCCCCCCCCC------
Confidence 445778899998876543221 246789999976643 467777777765 999999999999976432
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
......+++++.+.+..+++. ...+++.++||||||.+++.++.++|++++++|+..
T Consensus 73 ~~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 73 KDPMTYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp SSGGGCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred CCccccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 001123455555554444433 123689999999999999999999999999999864
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-13 Score=133.20 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=74.2
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.||++||..+.. ..|......|.++ |.|+.+|+||+|.+... . ..+++++.+.+..+++. ...+
T Consensus 16 ~~~vvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~------~---~~~~~~~a~dl~~~l~~--l~~~ 81 (255)
T 3bf7_A 16 NSPIVLVHGLFGSL--DNLGVLARDLVND-HNIIQVDVRNHGLSPRE------P---VMNYPAMAQDLVDTLDA--LQID 81 (255)
T ss_dssp CCCEEEECCTTCCT--TTTHHHHHHHTTT-SCEEEECCTTSTTSCCC------S---CCCHHHHHHHHHHHHHH--HTCS
T ss_pred CCCEEEEcCCcccH--hHHHHHHHHHHhh-CcEEEecCCCCCCCCCC------C---CcCHHHHHHHHHHHHHH--cCCC
Confidence 47799999976643 4577777777665 99999999999976432 0 23556665555555543 1236
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
++.++||||||.+++.++.++|++++++|+..
T Consensus 82 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 113 (255)
T 3bf7_A 82 KATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred CeeEEeeCccHHHHHHHHHhCcHhhccEEEEc
Confidence 89999999999999999999999999999864
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-12 Score=131.59 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.+|.+... + +++.|.||++||.++.. ..|...+..|++ +|.|+++|.||+|.+... ....
T Consensus 14 ~~g~~l~y~~~---G---~g~~~pvvllHG~~~~~--~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~--------~~~~ 76 (316)
T 3afi_E 14 VLGSSMAYRET---G---AQDAPVVLFLHGNPTSS--HIWRNILPLVSP-VAHCIAPDLIGFGQSGKP--------DIAY 76 (316)
T ss_dssp ETTEEEEEEEE---S---CTTSCEEEEECCTTCCG--GGGTTTHHHHTT-TSEEEEECCTTSTTSCCC--------SSCC
T ss_pred eCCEEEEEEEe---C---CCCCCeEEEECCCCCch--HHHHHHHHHHhh-CCEEEEECCCCCCCCCCC--------CCCC
Confidence 36777765432 1 12235899999987644 457777777765 599999999999986431 1235
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+++++.+.+..++++- .-+++.|+|+||||.+++.++.++|++++++|+..++
T Consensus 77 ~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 129 (316)
T 3afi_E 77 RFFDHVRYLDAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFI 129 (316)
T ss_dssp CHHHHHHHHHHHHHHT--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHc--CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccC
Confidence 7888888777777652 3378999999999999999999999999999988753
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=124.09 Aligned_cols=169 Identities=14% Similarity=0.022 Sum_probs=117.0
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCc---EEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGW---VVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~---~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
.|+||++||..+.. ..|......|.++|| .|+.+|+||.|.... ..++++.+.+..++++ .
T Consensus 3 ~~~vv~~HG~~~~~--~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGAS--FNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCCG--GGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCCH--hHHHHHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--c
Confidence 47899999976543 567888889999998 599999999876421 2556777777666654 2
Q ss_pred CCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCccc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYD 648 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~ 648 (726)
+.+++.++|+|+||.+++.++.++ |++++++|+.+|....... . .+ +.
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~---~----------~~--~~--------------- 116 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG---K----------AL--PG--------------- 116 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS---B----------CC--CC---------------
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc---c----------cC--CC---------------
Confidence 457899999999999999999887 8999999999987653210 0 00 00
Q ss_pred ccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 649 NIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 649 ~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
.....+.|.++++|..|..||+..+. + .+ ..+..++++||...... -+....+.+||.+.
T Consensus 117 -~~~~~~~p~l~i~G~~D~~v~~~~~~-----~--~~-----~~~~~~~~~gH~~~~~~--~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 117 -TDPNQKILYTSIYSSADMIVMNYLSR-----L--DG-----ARNVQIHGVGHIGLLYS--SQVNSLIKEGLNGG 176 (181)
T ss_dssp -SCTTCCCEEEEEEETTCSSSCHHHHC-----C--BT-----SEEEEESSCCTGGGGGC--HHHHHHHHHHHTTT
T ss_pred -CCCccCCcEEEEecCCCccccccccc-----C--CC-----CcceeeccCchHhhccC--HHHHHHHHHHHhcc
Confidence 00013568899999999999987432 1 11 12223789999754422 13455567888653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.8e-12 Score=133.03 Aligned_cols=215 Identities=8% Similarity=-0.016 Sum_probs=132.3
Q ss_pred ceeeCCCCCEEEEEEeCC-----------------CCcEEEEEEEECCCCceecccc-ccccceeEEec-CCCEEEEEEe
Q 004866 126 LSEVSPDHKFLAYTMYDK-----------------DNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAK-DGQALIYVVT 186 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~-----------------g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~Wsp-Dg~~l~y~~~ 186 (726)
.+.+||||++++...... .+....|+++|+++|+...++. ......+.||| ||+.|+|...
T Consensus 129 ~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 129 TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred ceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEe
Confidence 345699999998653211 1223689999999998776654 33467899999 9999999875
Q ss_pred cCC-CCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCc--eEEEEEeCCCCCCCeEEeeccCCc
Q 004866 187 DQN-KRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTS--SKVFLINAADPFSGLTLIWECEGL 263 (726)
Q Consensus 187 ~~~-~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~--~~l~~~d~~~~~~~~~~l~~~~~~ 263 (726)
... ....+||.+++.+..... +...........+.|||||++|++.+..... ..||++|++++ +.+.+......
T Consensus 209 ~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~ 285 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL--ENRQLTSMPAC 285 (388)
T ss_dssp SCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC--CEEEEEEECCE
T ss_pred cCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC--ceEEEEcCCCc
Confidence 321 124589999987654322 2222221234467899999999888775544 35999999884 44444432221
Q ss_pred -------eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCC-----------CceEEEEeee
Q 004866 264 -------AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQ-----------GLVVEDVDFC 325 (726)
Q Consensus 264 -------~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-----------~~~l~~~~~~ 325 (726)
....+++||+.|++.....+......+..|+.++++ . +..+.+..+.. ...-..+...
T Consensus 286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~-~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK-N---GTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp EEEEECTTSSEEEEEECCC------------CCCCEEEEEETT-T---TEEEEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc-C---CceEEeccccCcccccccccccCCCCccCCCC
Confidence 011468899988876643110000113568888876 2 33344443322 1111245556
Q ss_pred CCEEEEEEEeCCeeEEEEEecC
Q 004866 326 KTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 326 ~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
++.|++....+|.++|++++++
T Consensus 362 g~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 362 DKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp SSEEEEEECTTSSCEEEEEECC
T ss_pred CCEEEEEecCCCceeEEEEECC
Confidence 7889999888999999999875
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=134.74 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=89.7
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..||.++.+...- +.|+||++||..+.. ..|......|+++ |.|+.+|+||+|.+... ...
T Consensus 16 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~--------~~~ 76 (301)
T 3kda_A 16 EVDGVKLHYVKGG--------QGPLVMLVHGFGQTW--YEWHQLMPELAKR-FTVIAPDLPGLGQSEPP--------KTG 76 (301)
T ss_dssp EETTEEEEEEEEE--------SSSEEEEECCTTCCG--GGGTTTHHHHTTT-SEEEEECCTTSTTCCCC--------SSC
T ss_pred eeCCeEEEEEEcC--------CCCEEEEECCCCcch--hHHHHHHHHHHhc-CeEEEEcCCCCCCCCCC--------CCC
Confidence 3488888764431 347899999987644 5577778888888 99999999999976432 223
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCc-EEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHK-LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+++|+.+.+..+++. .+.++ +.++|||+||.+++.++.++|++++++|+.+|..
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 132 (301)
T 3kda_A 77 YSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPI 132 (301)
T ss_dssp SSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCC
T ss_pred ccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCC
Confidence 4677777777766654 23356 9999999999999999999999999999999864
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-12 Score=131.81 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=86.8
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEEc----cCCCCCC
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRSELKSLLDRGWVVAFAD----VRGGGGG 537 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d----~RG~g~~ 537 (726)
+..+.+.+.. | ..+.+..+-|. ++..|+||++||..+... ...|......| ++||.|+.+| +||+|.+
T Consensus 13 ~~g~~~~~~~-~-~~~~y~~~g~~----~~~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S 85 (335)
T 2q0x_A 13 VQGHLFTYYK-D-PYCKIPVFMMN----MDARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQ 85 (335)
T ss_dssp EEEEEEEEEE-E-TTEEEEEEEEC----TTSSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCSC
T ss_pred cceEEEecCC-C-CceeEEEeccC----CCCCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCCc
Confidence 3344444544 4 45555444322 123578899999544322 12245556666 7899999995 5888764
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH--cCCCceeEEEEeCCccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN--CCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~--~~p~~f~a~v~~~p~~d 609 (726)
.. ....+|+.+.+++|.++ .+.+++.|+||||||.+++.++. .+|++++++|+.+|+.+
T Consensus 86 ~~-----------~~~~~d~~~~~~~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~ 146 (335)
T 2q0x_A 86 DH-----------AHDAEDVDDLIGILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD 146 (335)
T ss_dssp CH-----------HHHHHHHHHHHHHHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred cc-----------cCcHHHHHHHHHHHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence 21 12467888888888764 34579999999999999999988 57999999999888654
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=130.15 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=80.8
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||..... ..|...+..|.++||.|+.+|+||+|.+... .....+++++.+.+..+++.-. ..++
T Consensus 4 ~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~-~~~~ 73 (257)
T 3c6x_A 4 AHFVLIHTICHGA--WIWHKLKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEALP-PGEK 73 (257)
T ss_dssp CEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHTSC-TTCC
T ss_pred CcEEEEcCCccCc--CCHHHHHHHHHhCCCEEEEeCCCCCCCCCCC-------cccccCHHHHHHHHHHHHHhcc-ccCC
Confidence 6789999976432 4588888899999999999999999976321 0112478888877777776421 1268
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+.++||||||++++.++.++|++++++|+.++.
T Consensus 74 ~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~ 106 (257)
T 3c6x_A 74 VILVGESCGGLNIAIAADKYCEKIAAAVFHNSV 106 (257)
T ss_dssp EEEEEEETHHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eEEEEECcchHHHHHHHHhCchhhheEEEEecc
Confidence 999999999999999999999999999987764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-12 Score=133.61 Aligned_cols=261 Identities=10% Similarity=-0.023 Sum_probs=143.1
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-cccc-ce-------------------eEEecCCCEEEEEE
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRV-SN-------------------IAWAKDGQALIYVV 185 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~-~~-------------------~~WspDg~~l~y~~ 185 (726)
+.|||||++|||+... + +|+++|+++|+...+.. .... .. ..|+||++.+++..
T Consensus 86 ~~~spdg~~l~~~~~~-~----~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 86 GFISTDERAFFYVKNE-L----NLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp CEECTTSSEEEEEETT-T----EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ceECCCCCEEEEEEcC-C----cEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence 6799999999998643 2 59999999998765533 1110 00 23444444443331
Q ss_pred ecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCc---eEEEEEeCCCCCCCeEEeeccC
Q 004866 186 TDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTS---SKVFLINAADPFSGLTLIWECE 261 (726)
Q Consensus 186 ~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~---~~l~~~d~~~~~~~~~~l~~~~ 261 (726)
.........||++++.+++... +... ......+.||| ||+.|++.+..... ..||++|+++ +..+.+....
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~-~~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~ 235 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEV-IHQD--TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG--SNVRKIKEHA 235 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEE-EEEE--SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS--CCCEESSCCC
T ss_pred eccCCCcceEEEEECCCCcEEe-eccC--CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC--CceeEeeccC
Confidence 1001234589999998775333 3322 22334678999 89989888753221 6899999976 3455555422
Q ss_pred Cc---eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEee-eCCEEEEEEE---
Q 004866 262 GL---AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF-CKTHMALILR--- 334 (726)
Q Consensus 262 ~~---~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~-~~~~lv~~~~--- 334 (726)
.. ....++++|+.|++.++..+. ....|+.+++. . +..+.+... +... ..+.. .++.+++...
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~-~---g~~~~l~~~-~~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPE-T---LENEEVMVM-PPCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTT-T---CCEEEEEEC-CSEE-EEEECSSSSEEEEEECCC-
T ss_pred CCccccceEECCCCCEEEEEecCCCC----ccceEEEEECC-C---CCeEEeeeC-CCCC-CCccCCCCceEEEecCCcc
Confidence 12 224678999999888775432 12448888876 2 333433322 2222 33444 4454443221
Q ss_pred ----------eCCeeEEEEEecCCCCCCcceeecccccccccC---CCceeeeecCCCCcCCCcEEEEEEccCCCCceEE
Q 004866 335 ----------EGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPL---PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVV 401 (726)
Q Consensus 335 ----------~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~ 401 (726)
.++...|+++++.++. ...+.. ..... ............+++++..+++..+. ..+..+|
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~~~~~l~ 378 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKS---AQKLCK---HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-EGVPAIY 378 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTB---CCEEEE---CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEE
T ss_pred eeeccccccccCCCCcEEEEecccCc---eEEccC---CCCccccccccccCCCCCceEccCCCeEEEEecC-CCCceEE
Confidence 2355789999986532 111110 00000 00000000112345678887776544 4567899
Q ss_pred EEECCCCeEEEEE
Q 004866 402 DYDLSYGKWNIIQ 414 (726)
Q Consensus 402 ~~d~~~~~~~~~~ 414 (726)
.+|+.+++.+.+.
T Consensus 379 ~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 379 IADVPESYKHLEH 391 (396)
T ss_dssp EEECCTTCC----
T ss_pred EEEEccccccccc
Confidence 9999888766543
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-12 Score=128.57 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=88.1
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..+|.+|++... + ..|.||++||.++.. ..|...+..|+++ |.|+++|.||+|.+... . ......
T Consensus 15 ~~~g~~l~y~~~---G-----~g~~lvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~---~~~~~~ 79 (294)
T 1ehy_A 15 QLPDVKIHYVRE---G-----AGPTLLLLHGWPGFW--WEWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-D---LNDLSK 79 (294)
T ss_dssp ECSSCEEEEEEE---E-----CSSEEEEECCSSCCG--GGGHHHHHHHHTT-SEEEEECCTTSTTSCCC-C---TTCGGG
T ss_pred EECCEEEEEEEc---C-----CCCEEEEECCCCcch--hhHHHHHHHHhhc-CEEEecCCCCCCCCCCC-c---cccccC
Confidence 357888876432 1 236899999987643 5688888888776 99999999999986432 0 000012
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
.+++++.+.+..++++- .-+++.++||||||.+++.++.++|++++++|+..+.
T Consensus 80 ~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 133 (294)
T 1ehy_A 80 YSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133 (294)
T ss_dssp GCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCC
Confidence 46777777777776642 3368999999999999999999999999999998863
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=127.12 Aligned_cols=208 Identities=15% Similarity=0.066 Sum_probs=125.1
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
.+.|+||++||..+. ...|......|++ +|.|+.+|+||+|.+.. .....+++++.+.+..++++- +
T Consensus 18 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~l~~~--~ 84 (267)
T 3fla_A 18 DARARLVCLPHAGGS--ASFFFPLAKALAP-AVEVLAVQYPGRQDRRH--------EPPVDSIGGLTNRLLEVLRPF--G 84 (267)
T ss_dssp TCSEEEEEECCTTCC--GGGGHHHHHHHTT-TEEEEEECCTTSGGGTT--------SCCCCSHHHHHHHHHHHTGGG--T
T ss_pred CCCceEEEeCCCCCC--chhHHHHHHHhcc-CcEEEEecCCCCCCCCC--------CCCCcCHHHHHHHHHHHHHhc--C
Confidence 456899999998653 3567777777655 59999999999886422 112346788777777776542 5
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCc----eeEEEEeCCcccccccccCCCCCCChh----hhcccCC-CC----Ch---
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDL----FRAVVLEVPFLDATNTLLYPILPLIAA----DYEEFGY-PG----DI--- 635 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~~~~~~~~~~~~----~~~~~g~-~~----~~--- 635 (726)
.+++.|+|+|+||.+++.++.++|++ ++++|+..+........ ......... ....++. +. .+
T Consensus 85 ~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (267)
T 3fla_A 85 DRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRD-DDVRGASDERLVAELRKLGGSDAAMLADPELL 163 (267)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCC-SCTTCCCHHHHHHHHHHTCHHHHHHHHSHHHH
T ss_pred CCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccc-hhhcccchHHHHHHHHHhcCcchhhccCHHHH
Confidence 57999999999999999999999986 88888877654322110 000000000 0000110 00 00
Q ss_pred --------hHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchh
Q 004866 636 --------DDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRY 707 (726)
Q Consensus 636 --------~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 707 (726)
..+..+..+.+... . .++.|+|+++|..|..||+..+.++.+.+.. . ..+..+++ ||.... .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~-----~~~~~~~g-gH~~~~-~ 233 (267)
T 3fla_A 164 AMVLPAIRSDYRAVETYRHEPG-R-RVDCPVTVFTGDHDPRVSVGEARAWEEHTTG-P-----ADLRVLPG-GHFFLV-D 233 (267)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT-C-CBSSCEEEEEETTCTTCCHHHHHGGGGGBSS-C-----EEEEEESS-STTHHH-H
T ss_pred HHHHHHHHHHHHhhhccccccc-C-cCCCCEEEEecCCCCCCCHHHHHHHHHhcCC-C-----ceEEEecC-Cceeec-c
Confidence 11122223333222 2 3788999999999999999888777665543 1 12222677 996422 2
Q ss_pred hHHHHHHHHHHHHHHh
Q 004866 708 LQCKESALETAFLIKM 723 (726)
Q Consensus 708 ~~~~~~~~~~~fl~~~ 723 (726)
+.........+||.+.
T Consensus 234 ~~~~~~~~i~~fl~~~ 249 (267)
T 3fla_A 234 QAAPMIATMTEKLAGP 249 (267)
T ss_dssp THHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHhccc
Confidence 2223334456777554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-11 Score=136.42 Aligned_cols=209 Identities=11% Similarity=0.004 Sum_probs=137.0
Q ss_pred EeeceeeCCCCCEEEEEEeCC-----CCcEEEEEEEECCC------Cceeccc-c-ccccceeEEecCCCEEEEEEecCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDK-----DNDYFTLSVRNLNS------GALCSKP-Q-AVRVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~-----g~e~~~l~v~dl~t------g~~~~~~-~-~~~~~~~~WspDg~~l~y~~~~~~ 189 (726)
....++|||||++|+|+.... +....+|+++|+++ ++...++ . ......++|||||+.|+|+..+..
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence 456789999999999987541 13357899999999 7766665 4 345677899999999999976543
Q ss_pred C---CCceEEEEEcC-CCC--ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc
Q 004866 190 K---RPYQIYCSIIG-STD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL 263 (726)
Q Consensus 190 ~---~~~~l~~~~l~-t~~--~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 263 (726)
. ...+||++++. ++. ....+..... .....+.|||||+ |++.++......||++|+++ ++.+.+......
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~ 286 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT--GAATQLCRREEE 286 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEECTTSC-EEEEECTTSSCEEEEECTTT--CCEEESSCCSSB
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEECCCCe-EEEEECCCCCeEEEEEECCC--Cceeeccccccc
Confidence 2 23589999998 452 2222332212 2234688999999 77777766667899999876 445555543222
Q ss_pred e----------EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEE-eeeCCEEEEE
Q 004866 264 A----------HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDV-DFCKTHMALI 332 (726)
Q Consensus 264 ~----------~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~-~~~~~~lv~~ 332 (726)
. .+.+++++ .+++..+. + ..+|+.++++ . +..+.+..+ ...+..+ +..++.+++.
T Consensus 287 ~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~------~~~l~~~d~~-~---~~~~~l~~~--~~~~~~~~s~~~~~~~~~ 352 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANG-LIAVVHGK-G------AAVLGILDPE-S---GELVDAAGP--WTEWAATLTVSGTRAVGV 352 (662)
T ss_dssp SSCCCCSTTCCSEEECTTS-CEEEEEBS-S------SCEEEEEETT-T---TEEEECCSS--CCEEEEEEEEETTEEEEE
T ss_pred ccCccccccCceEeEeCCC-EEEEEEEc-C------ccEEEEEECC-C---CcEEEecCC--CCeEEEEEecCCCEEEEE
Confidence 1 22233444 46666555 3 3679988875 2 234444222 2345566 7778888877
Q ss_pred EEeCCe-eEEEEEecCCC
Q 004866 333 LREGRT-YRLCSVSLPLP 349 (726)
Q Consensus 333 ~~~~g~-~~l~~~~l~~~ 349 (726)
...... ..|+++++.++
T Consensus 353 ~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 353 AASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEETTEEEEEEEEETTTC
T ss_pred EcCCCCCCEEEEEECCCC
Confidence 766544 58999987654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-11 Score=139.29 Aligned_cols=259 Identities=14% Similarity=0.116 Sum_probs=163.8
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc------cc--cccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP------QA--VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~------~~--~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
++|||++++|.....|.....||+++..+|+...+. .. .....++|||||+.|+|...+.......|+++++
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 459999999999877766678999998877654321 11 1356789999999999998765555568999999
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-------------ceEEEEEeCCCCCCCeEEeeccCC----c
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-------------SSKVFLINAADPFSGLTLIWECEG----L 263 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-------------~~~l~~~d~~~~~~~~~~l~~~~~----~ 263 (726)
.+++.......... +.++.|||||+.|++.+.... ..+||++++.++....+.+..... .
T Consensus 159 ~tg~~~~~~~~~~~---~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 159 DGAKELPDVLERVK---FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp TTTEEEEEEEEEEC---SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred CCCCCCcccccCcc---cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 88763222222211 234789999999999987654 357999999875433344443321 1
Q ss_pred eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCC-----CCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCC-
Q 004866 264 AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASF-----PSRTWESVFIDDQGLVVEDVDFCKTHMALILREGR- 337 (726)
Q Consensus 264 ~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g- 337 (726)
....+++||+.|++.++..... +..|+.++++ +. ....++.+..+.. .....+...++.|++..+.++
T Consensus 236 ~~~~~SpDg~~l~~~~~~~~~~----~~~l~~~d~~-~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 236 GGAELSDDGRYVLLSIREGCDP----VNRLWYCDLQ-QESNGITGILKWVKLIDNFE-GEYDYVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp EEEEECTTSCEEEEEEECSSSS----CCEEEEEEGG-GSSSSSCSSCCCEEEECSSS-SCEEEEEEETTEEEEEECTTCT
T ss_pred EEEEEcCCCCEEEEEEEccCCC----ccEEEEEECc-ccccccCCccceEEeeCCCC-cEEEEEeccCCEEEEEECCCCC
Confidence 3456789999999988644211 3568888876 30 1225676654433 333456777889998887665
Q ss_pred eeEEEEEecCCCCCCcceeecccccccccC-CC-ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCe
Q 004866 338 TYRLCSVSLPLPAGKGVVHLKELHPHFLPL-PK-YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGK 409 (726)
Q Consensus 338 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~ 409 (726)
..+|+++++.++.- . .+.. .++- +. .+.++ .+. +++.+++++..- .-..|+.+|+.+++
T Consensus 310 ~~~l~~~d~~~~~~-~--~~~~----l~~~~~~~~~~~~----~~~-~~~~lv~~~~~~-g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 310 NYRLINIDFTDPEE-S--KWKV----LVPEHEKDVLEWV----ACV-RSNFLVLCYLHD-VKNTLQLHDLATGA 370 (710)
T ss_dssp TCEEEEEETTSCCG-G--GCEE----EECCCSSCEEEEE----EEE-TTTEEEEEEEET-TEEEEEEEETTTCC
T ss_pred CCEEEEEeCCCCCc-c--ccee----ccCCCCCCeEEEE----EEE-cCCEEEEEEEEC-CEEEEEEEECCCCC
Confidence 56899999865320 0 0110 1111 11 11111 122 356666666543 23578899986665
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=129.70 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=72.4
Q ss_pred c-EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 495 P-GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 495 P-~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
| .||++||..+.. ..|......|. .+|.|+.+|+||+|.+... ...+++++.+ .+++. .+ +
T Consensus 13 ~~~vvllHG~~~~~--~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~~~---~l~~~--l~-~ 74 (258)
T 1m33_A 13 NVHLVLLHGWGLNA--EVWRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADMAE---AVLQQ--AP-D 74 (258)
T ss_dssp SSEEEEECCTTCCG--GGGGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHHHH---HHHTT--SC-S
T ss_pred CCeEEEECCCCCCh--HHHHHHHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHHHH---HHHHH--hC-C
Confidence 5 789999975543 45777777765 5899999999999976432 1235666543 44432 34 7
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
++.++||||||.+++.++.++|++++++|+..+.
T Consensus 75 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~ 108 (258)
T 1m33_A 75 KAIWLGWSLGGLVASQIALTHPERVRALVTVASS 108 (258)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CeEEEEECHHHHHHHHHHHHhhHhhceEEEECCC
Confidence 8999999999999999999999999999987764
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=127.01 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=88.0
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEcc--------CCCCCCCCccccc-c-
Q 004866 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADV--------RGGGGGGKKWHHD-G- 545 (726)
Q Consensus 476 ~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------RG~g~~g~~~~~~-~- 545 (726)
..+++.|++|.+. .++.|+||.+||+.. .+.+||+|+.+|+ ||+.++|. |++. +
T Consensus 90 ~~~~~~i~lP~~~--~~p~Pvii~i~~~~~-------------~~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~~ 153 (375)
T 3pic_A 90 ISFTVTITYPSSG--TAPYPAIIGYGGGSL-------------PAPAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYGS 153 (375)
T ss_dssp EEEEEEEECCSSS--CSSEEEEEEETTCSS-------------CCCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred eEEEEEEECCCCC--CCCccEEEEECCCcc-------------ccCCCeEEEEecccccccccCCCCcccee-cccccCC
Confidence 3577788888753 378999999988421 1458999999997 66656665 4421 1
Q ss_pred cccCCCCc--HHHHHHHHHHHHHcC--CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 546 RRTKKLNS--IKDFISCARFLIEKE--IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 546 ~~~~~~~~--~~D~~~~~~~l~~~~--~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
...++... .-|+..+++||.++. .+|++||+|+|+|+||.++++++... ++|+++|+.++.++
T Consensus 154 ~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~ 220 (375)
T 3pic_A 154 SHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAG 220 (375)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCC
Confidence 11232222 248899999999998 89999999999999999999999975 58999999987654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.38 E-value=9e-11 Score=119.49 Aligned_cols=201 Identities=11% Similarity=-0.003 Sum_probs=133.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-Cceecccc-c--cccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKPQ-A--VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-g~~~~~~~-~--~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+..++|||||++|++.. .+ .|+++|+++ ++...+.. . ..+..+.|+|||+.|++...+. ....+||.++
T Consensus 44 v~~~~~spdg~~l~~~~--~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~l~~~~ 116 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS--EG----LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE-FGKSAIYLLP 116 (297)
T ss_dssp CEEEEECTTSSEEEEEE--TT----EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT-TSSCEEEEEE
T ss_pred eEeeEECCCCCEEEEEc--CC----eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC-CCcceEEEEE
Confidence 55678999999999974 23 599999999 87765543 2 3457799999999999986432 2346899999
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLF 278 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~ 278 (726)
+.++.... +. .... ...+.|+|||++|++.........||.+++.+ +..+.+...... ....++++|+.+++.
T Consensus 117 ~~~~~~~~-~~-~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 117 STGGTPRL-MT-KNLP--SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp TTCCCCEE-CC-SSSS--EEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred CCCCceEE-ee-cCCC--ccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEE
Confidence 87664322 22 1222 34578999999999887766667899999876 445555444333 345677899988888
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEee--eCCEEEEEEEeC--------CeeEEEEEecCC
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF--CKTHMALILREG--------RTYRLCSVSLPL 348 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~--~~~~lv~~~~~~--------g~~~l~~~~l~~ 348 (726)
+..++ ..+|+.++.. . .....+..+ ...+..+.+ .++.|++....+ +...|+++++.+
T Consensus 191 ~~~~~------~~~i~~~~~~-~---~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 191 SSRTG------QMQIWRVRVD-G---SSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp ECTTS------SCEEEEEETT-S---SCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred ecCCC------CccEEEECCC-C---CCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 76443 3678888765 1 233333222 233444444 456777766654 336799999875
Q ss_pred C
Q 004866 349 P 349 (726)
Q Consensus 349 ~ 349 (726)
+
T Consensus 259 ~ 259 (297)
T 2ojh_A 259 G 259 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=133.31 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=82.5
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDR--GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
+..|.||++||..+.. ..|......|.++ ||.|+.+|+||+|.+.... ...++|+.+.+..+++..
T Consensus 34 ~~~~~vvllHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~---------~~~~~~~~~~l~~~~~~~- 101 (302)
T 1pja_A 34 ASYKPVIVVHGLFDSS--YSFRHLLEYINETHPGTVVTVLDLFDGRESLRPL---------WEQVQGFREAVVPIMAKA- 101 (302)
T ss_dssp -CCCCEEEECCTTCCG--GGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCH---------HHHHHHHHHHHHHHHHHC-
T ss_pred CCCCeEEEECCCCCCh--hHHHHHHHHHHhcCCCcEEEEeccCCCccchhhH---------HHHHHHHHHHHHHHhhcC-
Confidence 4467899999976543 4688888999998 9999999999997642211 136777877787777654
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCC-ceeEEEEeCCccc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVPFLD 609 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~~d 609 (726)
.+++.++|||+||.+++.++.++|+ +++++|+.+|...
T Consensus 102 --~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~ 140 (302)
T 1pja_A 102 --PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQM 140 (302)
T ss_dssp --TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTT
T ss_pred --CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcc
Confidence 4789999999999999999999999 7999999887653
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-12 Score=129.69 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=138.9
Q ss_pred CceEEEEEEECC-CCcEEEEEEEEcCCCC-----CCCCccEEEEEcCCCCCCCCccchH--HH-HHHHHCCcEEEEEccC
Q 004866 462 FYSCEQYDVPSH-DGISVPLTIIYSPKYK-----KENQNPGLLHGHGAYGELLDKRWRS--EL-KSLLDRGWVVAFADVR 532 (726)
Q Consensus 462 ~~~~~~~~~~s~-dG~~i~~~l~~p~~~~-----~~~~~P~vl~~hGg~~~~~~~~~~~--~~-~~l~~~G~~v~~~d~R 532 (726)
..+..++++.|. -|.++.+.|+.|++.. +++++|+|.++||..+.. ..|.. .+ +.+.+.|.++++++..
T Consensus 11 gG~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~--~~w~~~~~~~~~~~~~~~~~v~p~~~ 88 (299)
T 4fol_A 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTP--DNASEKAFWQFQADKYGFAIVFPDTS 88 (299)
T ss_dssp TEEEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCH--HHHHHHSCHHHHHHHHTCEEEEECSS
T ss_pred CCEEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCCh--HHHHHhchHhHHHHHcCchhhccCCC
Confidence 346677778774 6789999999998753 357899999999976532 33432 23 4445579999999842
Q ss_pred --CCC---C--------CCCcccccccc-c-CCCCcHHHHH-HHH-HHHHH-------cCCCCCCcEEEEEecccHHHHH
Q 004866 533 --GGG---G--------GGKKWHHDGRR-T-KKLNSIKDFI-SCA-RFLIE-------KEIVKEHKLAGWGYSAGGLLVA 588 (726)
Q Consensus 533 --G~g---~--------~g~~~~~~~~~-~-~~~~~~~D~~-~~~-~~l~~-------~~~~d~~ri~i~G~S~GG~l~~ 588 (726)
+-. + .+..|+..... . .+...+++++ .-+ .++.+ +...++++.+|.|+||||+-++
T Consensus 89 p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl 168 (299)
T 4fol_A 89 PRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAI 168 (299)
T ss_dssp CCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHH
T ss_pred cceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHH
Confidence 111 0 11111111100 0 0112233332 222 22222 1234567899999999999999
Q ss_pred HHHHcC--CCceeEEEEeCCcccccccccCCCCCCChhhhc-ccCCCCChhHHHHHHhcCccccccc--CCCCCeEEEEe
Q 004866 589 AAINCC--PDLFRAVVLEVPFLDATNTLLYPILPLIAADYE-EFGYPGDIDDFHAIRNYSPYDNIQK--DVLYPAVLVTS 663 (726)
Q Consensus 589 ~~~~~~--p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~i~~--~~~~P~lli~g 663 (726)
.++.++ |++|.++.+.+|.++.... ++...... .+|... ..+.++++...++. ....|.++|.+
T Consensus 169 ~~al~~~~~~~~~~~~s~s~~~~p~~~------~~~~~~~~~~~g~~~-----~~~~~~d~~~l~~~~~~~~~~~i~id~ 237 (299)
T 4fol_A 169 CGYLKGYSGKRYKSCSAFAPIVNPSNV------PWGQKAFKGYLGEEK-----AQWEAYDPCLLIKNIRHVGDDRILIHV 237 (299)
T ss_dssp HHHHHTGGGTCCSEEEEESCCCCGGGS------HHHHHHHHHHTC----------CGGGCHHHHGGGSCCCTTCCEEEEE
T ss_pred HHHHhCCCCCceEEEEecccccCcccc------cccccccccccccch-----hhhhhcCHHHHHHhcccCCCCceEEEe
Confidence 999875 6789999999998875431 11111111 123221 12234444433332 13345677766
Q ss_pred cCCCCcChH--HHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHH-HHHHHHHHHHhhc
Q 004866 664 SFNTRFGVW--EAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKE-SALETAFLIKMME 725 (726)
Q Consensus 664 ~~D~~V~~~--~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~-~~~~~~fl~~~l~ 725 (726)
|.++..-.. .+..|.+++++++.+ .++.+ .++.+|. +..+.. ..+.+.|..++||
T Consensus 238 G~~D~f~~~~l~~~~f~~a~~~~g~~---~~~~~r~~~GydHs----y~f~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 238 GDSDPFLEEHLKPELLLEAVKATSWQ---DYVEIKKVHGFDHS----YYFVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp ETTCTTHHHHTCTHHHHHHHTTSTTT---TCEEEEEETTCCSS----HHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCcchhhhcCHHHHHHHHHhcCCC---ceEEEEeCCCCCCC----HHHHHHHHHHHHHHHHHhcC
Confidence 665432222 246899999998865 34555 4566895 334443 4566899999997
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=127.26 Aligned_cols=115 Identities=13% Similarity=-0.017 Sum_probs=86.7
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEcc--------CCCCCCCCccccccc--
Q 004866 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADV--------RGGGGGGKKWHHDGR-- 546 (726)
Q Consensus 477 ~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------RG~g~~g~~~~~~~~-- 546 (726)
.+++.|++|.+ .++.|+||.+||+.. .+.+||+++.+|+ +|+.++|. |+....
T Consensus 124 sf~~~i~lP~g---~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~~ 186 (433)
T 4g4g_A 124 SFSASIRKPSG---AGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGRD 186 (433)
T ss_dssp EEEEEEECCSS---SCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCTT
T ss_pred EEEEEEECCCC---CCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccccCCc
Confidence 45788888875 378999999987421 1457999999997 45556665 443221
Q ss_pred ccCCCCc--HHHHHHHHHHHHH----cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 547 RTKKLNS--IKDFISCARFLIE----KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 547 ~~~~~~~--~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
..++... .-|+..+++||.+ +..+|++||+|+|+|+||..+++++... ++|+++|+.+|.++
T Consensus 187 ~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~ 254 (433)
T 4g4g_A 187 HSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAG 254 (433)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTT
T ss_pred cchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCC
Confidence 1222211 2488889999998 8899999999999999999999999975 58999999998765
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.37 E-value=9.8e-12 Score=125.73 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=77.5
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.||++||..+.. ..|...+..|.++||.|+.+|+||+|.+... ...+++++.+.+..++++-..++.
T Consensus 16 ~~~vvllHG~~~~~--~~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~---------~~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGSG--ADWQPVLSHLARTQCAALTLDLPGHGTNPER---------HCDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCCG--GGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCCH--HHHHHHHHHhcccCceEEEecCCCCCCCCCC---------CccCHHHHHHHHHHHHHHhCcCCC
Confidence 48899999976643 4688888888768999999999999976421 113567777777766665333323
Q ss_pred cEEEEEecccHHHHHH---HHHcCCCceeEEEEeCCcc
Q 004866 574 KLAGWGYSAGGLLVAA---AINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~---~~~~~p~~f~a~v~~~p~~ 608 (726)
++.++||||||.+++. ++.++|++++++|+.++..
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~ 122 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHF 122 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCC
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCC
Confidence 4999999999999999 7788999999999887643
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-12 Score=127.91 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=87.3
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCc
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNS 553 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~ 553 (726)
||.+|.+...-+ ...|+||++||..+.. ..|...+..|. ++|.|+.+|+||+|.+... ....+
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~~--~~~~~~~~~L~-~~~~v~~~D~~G~G~S~~~--------~~~~~ 69 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQDH--RLFKNLAPLLA-RDFHVICPDWRGHDAKQTD--------SGDFD 69 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCCG--GGGTTHHHHHT-TTSEEEEECCTTCSTTCCC--------CSCCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCcH--hHHHHHHHHHH-hcCcEEEEccccCCCCCCC--------ccccC
Confidence 677766533211 1257999999976644 45777777774 4699999999999976432 22346
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCcc
Q 004866 554 IKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPFL 608 (726)
Q Consensus 554 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~ 608 (726)
++++.+.+..++++- +.+++.++|||+||.+++.++.++ |++++++|+.+|..
T Consensus 70 ~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 70 SQTLAQDLLAFIDAK--GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp HHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred HHHHHHHHHHHHHhc--CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 777777777776542 446899999999999999999999 99999999998865
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-12 Score=128.55 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH-----HHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS-----ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-----~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
+|.+|.+...-+ ++...|+||++||..+... ..|.. ....|++ +|.|+.+|+||+|....... ..
T Consensus 19 ~~~~l~y~~~G~----~~~~~p~vvllHG~~~~~~-~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~~~~----~~ 88 (286)
T 2qmq_A 19 PYGSVTFTVYGT----PKPKRPAIFTYHDVGLNYK-SCFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAPVFP----LG 88 (286)
T ss_dssp TTEEEEEEEESC----CCTTCCEEEEECCTTCCHH-HHHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCCCCC----TT
T ss_pred CCeEEEEEeccC----CCCCCCeEEEeCCCCCCch-hhhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCCCCC----CC
Confidence 677777644321 1124589999999766431 11333 4455554 79999999999985422111 01
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
....+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 89 ~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 89 YQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp CCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 1112677777766666644 234689999999999999999999999999999999865
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-11 Score=137.99 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=150.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCc----EEEEEEEECCCCceecccccc----ccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDND----YFTLSVRNLNSGALCSKPQAV----RVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e----~~~l~v~dl~tg~~~~~~~~~----~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
+..++|||||++|||+.+..+.. ..+|+++|+++|+...+.... ....++|||||+.|+|... ..|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------CeE
Confidence 45678999999999997543321 247999999999875544321 2567999999999999863 379
Q ss_pred EEEEcCCCCceeEEeeecCCc----------------eEEEEEEcCCCcEEEEEEcCCC---------------------
Q 004866 196 YCSIIGSTDEDALLLEESNEN----------------VYVNIRHTKDFHFVCVHTFSTT--------------------- 238 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~----------------~~~~~~~s~Dg~~l~~~~~~~~--------------------- 238 (726)
|++++.+++...++....... ....+.|||||++|++.+....
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (723)
T ss_dssp EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence 999998775433332211111 0135899999999998874321
Q ss_pred ----------ceEEEEEeCCCCCCCeEEeeccC-----Cc--eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCC
Q 004866 239 ----------SSKVFLINAADPFSGLTLIWECE-----GL--AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS 301 (726)
Q Consensus 239 ----------~~~l~~~d~~~~~~~~~~l~~~~-----~~--~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~ 301 (726)
...|+++|+.++. ..+.+.... .. ....++|||+.+++.++.... ...|+.+++. +
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-----~~~i~~~d~~-~ 289 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN-----VSILTLCDAT-T 289 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC-----EEEEEEEETT-T
T ss_pred cCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCC-----eEEEEEEeCC-C
Confidence 2379999998743 124444321 11 234678999877666665321 3567788876 2
Q ss_pred CCCCCceEEeecC-CCc-e----EEEEeeeCCEEEEE-EEeCC----eeEEEEEe-cCCCCCCcceeecccccccccCCC
Q 004866 302 FPSRTWESVFIDD-QGL-V----VEDVDFCKTHMALI-LREGR----TYRLCSVS-LPLPAGKGVVHLKELHPHFLPLPK 369 (726)
Q Consensus 302 ~~~~~~~~v~~~~-~~~-~----l~~~~~~~~~lv~~-~~~~g----~~~l~~~~-l~~~~~~~~~~~~~~~~~~~~~p~ 369 (726)
++...++... ... . -..+++.++.|++. ...+| ..+|++++ ..++.. . ....+.-..
T Consensus 290 ---g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~-----~~~~l~~~~ 358 (723)
T 1xfd_A 290 ---GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN---D-----NIQSITSGD 358 (723)
T ss_dssp ---CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS---C-----CCCBSCCSS
T ss_pred ---CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc---c-----ceeEeecCC
Confidence 3333333221 111 0 12345556778876 55666 66899998 332210 0 001111111
Q ss_pred -ceeeeecCCCCcCCCcEEEEEEccCCCC--ceEEEEECCCC
Q 004866 370 -YVSQIVPGPNYDYYSSTMRFAISSPVMP--DAVVDYDLSYG 408 (726)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~~~~ss~~~P--~~~~~~d~~~~ 408 (726)
.+..+ ..+++|++.+++..+. ..| ..+|.++..++
T Consensus 359 ~~~~~~---~~~spdg~~l~~~~~~-~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 359 WDVTKI---LAYDEKGNKIYFLSTE-DLPRRRQLYSANTVGN 396 (723)
T ss_dssp SCEEEE---EEEETTTTEEEEEESS-SCTTCCEEEEECSSTT
T ss_pred eEEEee---eEEcCCCCEEEEEEcC-CCCcceEEEEEeCCCC
Confidence 11111 1346788887766544 223 35777766543
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.9e-12 Score=129.58 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=85.7
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.++.+.. .+ .++.|.||++||.++.. ..|...+..|++. |.|+++|.||+|.+... .....
T Consensus 28 ~~g~~l~y~~---~G---~g~~~~vvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~GhG~S~~~-------~~~~~ 91 (318)
T 2psd_A 28 VLDSFINYYD---SE---KHAENAVIFLHGNATSS--YLWRHVVPHIEPV-ARCIIPDLIGMGKSGKS-------GNGSY 91 (318)
T ss_dssp ETTEEEEEEE---CC---SCTTSEEEEECCTTCCG--GGGTTTGGGTTTT-SEEEEECCTTSTTCCCC-------TTSCC
T ss_pred eCCeEEEEEE---cC---CCCCCeEEEECCCCCcH--HHHHHHHHHhhhc-CeEEEEeCCCCCCCCCC-------CCCcc
Confidence 4787776432 22 13346899999976643 4566666666554 79999999999976432 11224
Q ss_pred cHHHHHHHHHHHHHcCCCCC-CcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 553 SIKDFISCARFLIEKEIVKE-HKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
+++++.+.+..++++ .+. +++.|+||||||.+++.++.++|++++++|+..++
T Consensus 92 ~~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~ 145 (318)
T 2psd_A 92 RLLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESV 145 (318)
T ss_dssp SHHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccc
Confidence 688888888888765 233 78999999999999999999999999999986543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-10 Score=117.82 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=143.5
Q ss_pred CCeeECCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCC
Q 004866 53 PPLRWGPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPD 132 (726)
Q Consensus 53 ~p~~~g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPD 132 (726)
.++++|.+++|.....+.....+|...... +..+.+... . . +..+.||||
T Consensus 65 ~~SpDg~~la~~~~~~~~~~~~l~~~~~~~--------------------g~~~~l~~~-------~-~--~~~~~wspd 114 (347)
T 2gop_A 65 RISPDGKKIAFMRANEEKKVSEIWVADLET--------------------LSSKKILEA-------K-N--IRSLEWNED 114 (347)
T ss_dssp EECTTSSEEEEEEEETTTTEEEEEEEETTT--------------------TEEEEEEEE-------S-E--EEEEEECTT
T ss_pred EECCCCCEEEEEEeccCCCcceEEEEECCC--------------------CceEEEEcC-------C-C--ccceeECCC
Confidence 456789999988776643445666655321 233333332 1 1 567789999
Q ss_pred CCEEEEEEeC-----------------CC-----CcEEEEEEEECCCCce-eccccccccceeEEecCCCEEEEEEecCC
Q 004866 133 HKFLAYTMYD-----------------KD-----NDYFTLSVRNLNSGAL-CSKPQAVRVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 133 G~~la~~~~~-----------------~g-----~e~~~l~v~dl~tg~~-~~~~~~~~~~~~~WspDg~~l~y~~~~~~ 189 (726)
|++|+|+... .| ....+|+++|+++|+. ..++.. .+..+.|+||| |+|+.....
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~ 191 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHRE 191 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCC
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe--EEEEEeccc
Confidence 9999998753 11 1257899999999987 544433 66789999999 777654332
Q ss_pred C----C-CceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-----ceEEEEEeCCCCCCCeEEeec
Q 004866 190 K----R-PYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-----SSKVFLINAADPFSGLTLIWE 259 (726)
Q Consensus 190 ~----~-~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-----~~~l~~~d~~~~~~~~~~l~~ 259 (726)
. . ..+||.++ +++. ..+... .. .. .+||||++|++.+.... ...||++| + ++.+.+..
T Consensus 192 ~~~~~~~~~~l~~~d--~~~~-~~l~~~--~~-~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~--~~~~~l~~ 259 (347)
T 2gop_A 192 IIPQYFKFWDIYIWE--DGKE-EKMFEK--VS-FY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--G--KEVMGILD 259 (347)
T ss_dssp SSCCSSCCEEEEEEE--TTEE-EEEEEE--ES-EE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--S--SCEEESST
T ss_pred ccccccccccEEEeC--CCce-EEeccC--cc-ee--eECCCCCEEEEEEccccCCccccceEEEEC--C--CceEeccc
Confidence 1 1 45899998 4432 223322 22 22 23999999998886542 46899999 3 34555655
Q ss_pred cCCc-eE--EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeC
Q 004866 260 CEGL-AH--CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREG 336 (726)
Q Consensus 260 ~~~~-~~--~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~ 336 (726)
.... .. ..++ +| +++.+..++ ..+|+ ++ + ++...++.+ ...+..+.+.. .+++.....
T Consensus 260 ~~~~~~~~~~~~s-dg--~~~~~~~~~------~~~l~-~~-~-----g~~~~~~~~--~~~v~~~~~s~-~~~~~~~~~ 320 (347)
T 2gop_A 260 EVDRGVGQAKIKD-GK--VYFTLFEEG------SVNLY-IW-D-----GEIKPIAKG--RHWIMGFDVDE-IVVYLKETA 320 (347)
T ss_dssp TCCSEEEEEEEET-TE--EEEEEEETT------EEEEE-EE-S-----SSEEEEECS--SSEEEEEEESS-SEEEEEECS
T ss_pred cCCcccCCccEEc-Cc--EEEEEecCC------cEEEE-Ec-C-----CceEEEecC--CCeEEeeeeeC-cEEEEEcCC
Confidence 4322 22 3344 44 777665443 36788 77 4 233455443 45677777777 788887777
Q ss_pred Cee-EEEEEe
Q 004866 337 RTY-RLCSVS 345 (726)
Q Consensus 337 g~~-~l~~~~ 345 (726)
+.+ +|+.++
T Consensus 321 ~~~~~l~~~~ 330 (347)
T 2gop_A 321 TRLRELFTWD 330 (347)
T ss_dssp SSCCEEEEES
T ss_pred CChHHheEeC
Confidence 776 888886
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-13 Score=135.65 Aligned_cols=203 Identities=13% Similarity=0.036 Sum_probs=107.2
Q ss_pred ceEEEEEEECCCCcE-EEEEEEEcCCCCCC-------CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCC
Q 004866 463 YSCEQYDVPSHDGIS-VPLTIIYSPKYKKE-------NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGG 534 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~-i~~~l~~p~~~~~~-------~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~ 534 (726)
...|.+.|++.++.. ...|+..+.. .+. +..|.||++||..+.. ..|......|.+ ||.|+.+|+||+
T Consensus 13 ~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvllHG~~~~~--~~~~~l~~~L~~-~~~v~~~D~~G~ 88 (280)
T 3qmv_A 13 LGTENLYFQSNALLSQRSAWFPRPVA-APAAEPPDPAAAPLRLVCFPYAGGTV--SAFRGWQERLGD-EVAVVPVQLPGR 88 (280)
T ss_dssp ---------------CHHHHSCCCCC-CCCCCCCCTTTCSEEEEEECCTTCCG--GGGTTHHHHHCT-TEEEEECCCTTS
T ss_pred cCcceeeeecchhhhhcchheecCCC-CCcccccccCCCCceEEEECCCCCCh--HHHHHHHHhcCC-CceEEEEeCCCC
Confidence 366778898887732 2223322221 111 1238899999976543 457777777766 999999999999
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCcee----EEEEeCCcccc
Q 004866 535 GGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFR----AVVLEVPFLDA 610 (726)
Q Consensus 535 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~----a~v~~~p~~d~ 610 (726)
|.+... ....+++++.+.+..+++.- ...+++.|+|+|+||.+++.++.++|++.. .+++..+....
T Consensus 89 G~S~~~--------~~~~~~~~~a~~~~~~l~~~-~~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~ 159 (280)
T 3qmv_A 89 GLRLRE--------RPYDTMEPLAEAVADALEEH-RLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPH 159 (280)
T ss_dssp GGGTTS--------CCCCSHHHHHHHHHHHHHHT-TCSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGG
T ss_pred CCCCCC--------CCCCCHHHHHHHHHHHHHHh-CCCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCC
Confidence 865222 12346677766666555432 134789999999999999999998887765 55554432211
Q ss_pred cccccCCCCCCChh----hhccc-CCCCC---------------hhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcC
Q 004866 611 TNTLLYPILPLIAA----DYEEF-GYPGD---------------IDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFG 670 (726)
Q Consensus 611 ~~~~~~~~~~~~~~----~~~~~-g~~~~---------------~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~ 670 (726)
.... ......... ....+ +.+.. ...+.....+.+.. +.. ++.|+|+++|..|..++
T Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-i~~P~l~i~G~~D~~~~ 236 (280)
T 3qmv_A 160 LYGD-RADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHP-RPP-LDCPTTAFSAAADPIAT 236 (280)
T ss_dssp GCSC-CCGGGSCHHHHHHHHHHHTCCC---------CCTTHHHHHHHHHHHHTCCCCC-CCC-BCSCEEEEEEEECSSSC
T ss_pred CcCc-ccccccCHHHHHHHHHHhCCCChhhhcCHHHHHHHHHHHHHHHHHHHhccccC-CCc-eecCeEEEEecCCCCcC
Confidence 1000 000000000 00011 11100 01122223333221 333 78999999999999999
Q ss_pred hHHHHHHHHHH
Q 004866 671 VWEAAKWVARV 681 (726)
Q Consensus 671 ~~~~~~~~~~L 681 (726)
+..+.++.+.+
T Consensus 237 ~~~~~~~~~~~ 247 (280)
T 3qmv_A 237 PEMVEAWRPYT 247 (280)
T ss_dssp HHHHHTTGGGB
T ss_pred hHHHHHHHHhc
Confidence 88777665544
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-14 Score=142.84 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=84.8
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.||.++.+.. . ++.|+||++||..+.. ..|......|+ +||.|+.+|+||+|.+...-. .......
T Consensus 12 ~~g~~~~~~~---~-----g~~p~vv~lHG~~~~~--~~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~---~~~~~~~ 77 (304)
T 3b12_A 12 VGDVTINCVV---G-----GSGPALLLLHGFPQNL--HMWARVAPLLA-NEYTVVCADLRGYGGSSKPVG---APDHANY 77 (304)
Confidence 4777766432 1 2357899999976543 35666677776 899999999999987643210 0001223
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
+++++.+.+..+++. .+.+++.++|||+||.+++.++.++|++++++|+.+|...
T Consensus 78 ~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 78 SFRAMASDQRELMRT--LGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 455555555555543 2446899999999999999999999999999999988654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=141.79 Aligned_cols=268 Identities=10% Similarity=0.069 Sum_probs=153.7
Q ss_pred CCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCC----CcEEEEEEEECCCCce---eccccccccceeEEe
Q 004866 103 KIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKD----NDYFTLSVRNLNSGAL---CSKPQAVRVSNIAWA 175 (726)
Q Consensus 103 ~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g----~e~~~l~v~dl~tg~~---~~~~~~~~~~~~~Ws 175 (726)
+..+.+++....... .+..++|||||++|||+.+..+ +...+|+++|+++|+. ..+ ......++||
T Consensus 46 g~~~~~~~~~~~~~~-----~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~S 118 (719)
T 1z68_A 46 GQSYTILSNRTMKSV-----NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWS 118 (719)
T ss_dssp CCEEEEECHHHHHTT-----TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEEC
T ss_pred CcEEEEEcccccccc-----ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceEC
Confidence 445666765433211 1456789999999999976432 2246899999999987 333 2456789999
Q ss_pred cCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCce----------------EEEEEEcCCCcEEEEEEcCC--
Q 004866 176 KDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENV----------------YVNIRHTKDFHFVCVHTFST-- 237 (726)
Q Consensus 176 pDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~----------------~~~~~~s~Dg~~l~~~~~~~-- 237 (726)
|||+.|+|+. + ..|+++++.+++...++........ ...+.|||||++|++.+.+.
T Consensus 119 PDG~~la~~~-~-----~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~ 192 (719)
T 1z68_A 119 PVGSKLAYVY-Q-----NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD 192 (719)
T ss_dssp SSTTCEEEEE-T-----TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred CCCCEEEEEE-C-----CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence 9999999984 2 3799999987654332221111100 12589999999999987542
Q ss_pred -----------------------------CceEEEEEeCCCCCCC-eEEeec-----cCCc--eEEeeeecCCEEEEEec
Q 004866 238 -----------------------------TSSKVFLINAADPFSG-LTLIWE-----CEGL--AHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 238 -----------------------------~~~~l~~~d~~~~~~~-~~~l~~-----~~~~--~~~~~~~~g~~l~~~t~ 280 (726)
....|+++|+.++... ...+.. .... ....+++|+..++...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~ 272 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK 272 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence 1247899999873210 012221 1111 23456788654444334
Q ss_pred CcccCCCCCCeEEEEee----CCCCCCCCCceEEee---cCCCceE-------EEEeeeCCEEEEE-EEeCCeeEEEEEe
Q 004866 281 AAKEGQEADNHYLLRCP----VDASFPSRTWESVFI---DDQGLVV-------EDVDFCKTHMALI-LREGRTYRLCSVS 345 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~v~~---~~~~~~l-------~~~~~~~~~lv~~-~~~~g~~~l~~~~ 345 (726)
.... ...|+.++ +. + +++..++. ...+..+ ..+...++.+++. ...+|..+|++++
T Consensus 273 ~~~~-----~~~l~~~d~~~~~~-~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 273 RVQN-----VSVLSICDFREDWQ-T---WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp SSTT-----EEEEEEEEECSSSS-S---EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred cccC-----eEEEEEEcccCCCC-C---CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEE
Confidence 3321 36788888 54 2 23333331 1111111 2344556666664 5567888999999
Q ss_pred cCCCCCCcceeecccccccccCCC-ceeeeecCCCCcCCCcEEEEEEcc---CCCCceEEEEECCCC
Q 004866 346 LPLPAGKGVVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISS---PVMPDAVVDYDLSYG 408 (726)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ss---~~~P~~~~~~d~~~~ 408 (726)
+.++. . ..+.-.. .+..+. .. +++.++++.+. ...-..+|.+++.++
T Consensus 344 ~~~~~---~--------~~lt~~~~~v~~~~----~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 344 DTVEN---A--------IQITSGKWEAINIF----RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp SCSTT---C--------EECSCSSSCEEEEE----EE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred CCCCc---e--------EecccCceEEEEEE----EE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 86432 1 1121111 122221 12 67777766543 123357888888655
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.8e-13 Score=146.24 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=132.0
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchHHHHHH-HHCCcEEEEEccCCCC-CCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRSELKSL-LDRGWVVAFADVRGGG-GGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l-~~~G~~v~~~d~RG~g-~~g~~~~~~~~~~ 548 (726)
+.|...+ .|+.|++...+++.|+||++|||.... ....|....... ..+|++|+.+|||.+. +|+..-.... ..
T Consensus 82 ~edcl~l--~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~-~~ 158 (522)
T 1ukc_A 82 SEDCLFI--NVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQ-NG 158 (522)
T ss_dssp ESCCCEE--EEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHH-SS
T ss_pred CCcCCEE--EEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccc-cC
Confidence 5566544 567787644456789999999974322 223343322222 2469999999999432 3322111100 01
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC----CCceeEEEEeCCcccccccccCCCCC-
Q 004866 549 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC----PDLFRAVVLEVPFLDATNTLLYPILP- 620 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~p~~d~~~~~~~~~~~- 620 (726)
.+...+.|+.++++|+.++. -.||+||.|+|+|+||++++.++... +.+|+++|+.+|........ ....
T Consensus 159 ~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~--~~~~~ 236 (522)
T 1ukc_A 159 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTV--SEMEF 236 (522)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCS--GGGHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCH--HHHHH
Confidence 23457899999999998753 25999999999999999988877653 67999999999976432110 0000
Q ss_pred CChhhhcccCCCCChhHHHHHHhcCcccccccC--------CCCC--eEEEEecCCCCcChHHHHHHHHHHHhcCCCCCC
Q 004866 621 LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD--------VLYP--AVLVTSSFNTRFGVWEAAKWVARVRESTIYDPK 690 (726)
Q Consensus 621 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~--------~~~P--~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 690 (726)
.........|.....+..+.+++.++-.-+... ...| .+.++...|..+.+.++.++.++.+..+
T Consensus 237 ~~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~----- 311 (522)
T 1ukc_A 237 QFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIK----- 311 (522)
T ss_dssp HHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCC-----
T ss_pred HHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCC-----
Confidence 000011123443222345555554433211110 1223 3445556676677777777776665544
Q ss_pred CcEEE--EcCCCCCCC
Q 004866 691 RPILL--NLTTDIVEE 704 (726)
Q Consensus 691 ~~~~~--~~~~gH~~~ 704 (726)
.|+++ ..++||.+.
T Consensus 312 vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 312 VPVLVGDDTDEGSNFA 327 (522)
T ss_dssp CCEEEEEETBGGGGTS
T ss_pred CCEEEEeecchhHHhh
Confidence 46777 778898764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-10 Score=133.66 Aligned_cols=261 Identities=12% Similarity=0.047 Sum_probs=163.0
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECC---CCceeccc------ccc--ccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLN---SGALCSKP------QAV--RVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~---tg~~~~~~------~~~--~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.++|||++++|.....|.+...||+++.. +++...+. ... ....++|||||+.|+|...+...+...|+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 35699999999998777667889999987 66544321 111 45678999999999999776555557899
Q ss_pred EEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-----------ceEEEEEeCCCCCCCeEEeeccCC---
Q 004866 197 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-----------SSKVFLINAADPFSGLTLIWECEG--- 262 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-----------~~~l~~~d~~~~~~~~~~l~~~~~--- 262 (726)
++++.+++......... .+.++.|||| +.|++.+.... ..+||++++.++...-+.+....+
T Consensus 193 v~dl~tg~~~~~~~~~~---~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 193 FVGVADGKPLADELKWV---KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp EEETTTCCEEEEEEEEE---ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred EEECCCCCCCCccCCCc---eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 99998876222111111 1125789999 99999886554 457999999875433344444332
Q ss_pred -ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCC-ceEEeecCCCceEEEEeeeCCEEEEEEEeCC-ee
Q 004866 263 -LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRT-WESVFIDDQGLVVEDVDFCKTHMALILREGR-TY 339 (726)
Q Consensus 263 -~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g-~~ 339 (726)
.....+++||+.+++.++..... +..|+.++++ ++ ... ++.+.... +.....+...++.|++..+.++ ..
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~----~~~l~~~d~~-~~-~~~~~~~l~~~~-~~~~~~~~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDP----VNTVHVARVT-NG-KIGPVTALIPDL-KAQWDFVDGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCS----CCEEEEEEEE-TT-EECCCEEEECSS-SSCEEEEEEETTEEEEEECTTCTTC
T ss_pred EEEEEEECCCCCEEEEEEEccCCC----cceEEEEECC-CC-CCcccEEecCCC-CceEEEEeccCCEEEEEECCCCCCC
Confidence 23456789999999888654211 3568888876 32 124 77776543 3333445567889998887765 56
Q ss_pred EEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEE
Q 004866 340 RLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNII 413 (726)
Q Consensus 340 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~ 413 (726)
+|++++++++. . . +.. .++-... .+. +. ...++.++++...-. -..|+.+++.++..+.+
T Consensus 342 ~l~~~d~~~~~-~-~--~~~----l~~~~~~--~l~-~~--~~~~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 342 KIVRVDLSGST-P-R--FDT----VVPESKD--NLE-SV--GIAGNRLFASYIHDA-KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEEEEECSSSS-C-E--EEE----EECCCSS--EEE-EE--EEEBTEEEEEEEETT-EEEEEEEETTSCEEEEC
T ss_pred EEEEEeCCCCc-c-c--cEE----EecCCCC--eEE-EE--EEECCEEEEEEEECC-EEEEEEEeCCCCceeec
Confidence 89999986421 0 1 110 1111111 111 11 223556666665433 35788888865544444
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-09 Score=109.44 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=150.2
Q ss_pred CCCeeECCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCC
Q 004866 52 TPPLRWGPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSP 131 (726)
Q Consensus 52 s~p~~~g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SP 131 (726)
...+.+|+|+||+-...+ ..+|+.+.++ ...+.|.+-. + --++|
T Consensus 19 g~~~~~g~~iy~~n~~d~---~~ly~~~~dg--------------------~~~~~l~~~~---------~----~~i~~ 62 (302)
T 3s25_A 19 GLFCESDGEVFFSNTNDN---GRLYAMNIDG--------------------SNIHKLSNDT---------A----MYINA 62 (302)
T ss_dssp TCEEEETTEEEEEEGGGT---TEEEEEETTS--------------------CSCEEEEEEE---------E----EEEEE
T ss_pred eEEEEeCCEEEEEeCCCC---ceEEEEcCCC--------------------CCCEEccCCc---------e----eeEEE
Confidence 345689999999865322 4699987642 2334444311 1 12689
Q ss_pred CCCEEEEEEeCCCC---------cEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 132 DHKFLAYTMYDKDN---------DYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 132 DG~~la~~~~~~g~---------e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
||++|.|+....+. ..+.|+.+++++++...+.. .....|++++++|||+.... .....||++++++
T Consensus 63 ~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~~~~~s~~g~~Iy~~~~~~-~~~~~Iy~~~~dG 138 (302)
T 3s25_A 63 DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DPCIYASLIGNYIYYLHYDT-QTATSLYRIRIDG 138 (302)
T ss_dssp CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SCEEEEEEETTEEEEEEESS-SSCEEEEEEETTS
T ss_pred cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CCccEEEEeCCEEEEEeecC-CCCceEEEEECCC
Confidence 99999999776532 14689999999998665533 22348999999999986221 2345899999986
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCc
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~ 282 (726)
....+++-. .. ..++++|++|+|++. ....||++++.+ +..+.|... .....+.|+++.||+.....
T Consensus 139 s~~~~lt~~-~~------~~~~~~g~~iy~t~~--g~~~Iy~~~l~g--~~~~~l~~~--~~~~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 139 EEKKKIKNH-YL------FTCNTSDRYFYYNNP--KNGQLYRYDTAS--QSEALFYDC--NCYKPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp CCCEEEESS-CC------CCSEEETTEEEEECT--TTCCEEEEETTT--TEEEEEECS--CEEEEEEEETTEEEEEEGGG
T ss_pred CCeEEEeCC-Cc------eEeeEECCEEEEEeC--CCceEEEEECCC--CCEEEEeCC--CccceeeecCCEEEEEEcCC
Confidence 554444422 11 235789999999876 456899999987 344555432 22223558999999876543
Q ss_pred ccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 283 KEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+++|++++++ . .. +.++.. ..+..+++.++.|++..... ...|++++++.
T Consensus 206 -------~~~I~~~~ld-G---~~-~~~Lt~---~~~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG 255 (302)
T 3s25_A 206 -------DNAIVHVNIN-N---PN-PVVLTE---ANIEHYNVYGSLIFYQRGGD-NPALCVVKNDG 255 (302)
T ss_dssp -------TTEEEEECSS-S---CC-CEECSC---SCEEEEEEETTEEEEEECSS-SCEEEEEETTS
T ss_pred -------CcEEEEEECC-C---CC-eEEEeC---CCcceEEECCCEEEEEECCC-CcEEEEEECCC
Confidence 2679999987 2 22 233332 23467888899997764443 38899999874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-10 Score=132.11 Aligned_cols=213 Identities=11% Similarity=0.119 Sum_probs=138.7
Q ss_pred eeceeeCCCCCEEEEEEeCC----------------------------CCcEEEEEEEECCCCceeccccc----cccce
Q 004866 124 EELSEVSPDHKFLAYTMYDK----------------------------DNDYFTLSVRNLNSGALCSKPQA----VRVSN 171 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~----------------------------g~e~~~l~v~dl~tg~~~~~~~~----~~~~~ 171 (726)
+..+.|||||++|||..... ++...+|+++|+++|+...+... .....
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 35788999999999986211 12457899999999986655421 24567
Q ss_pred eEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceE---EEEEEcC--CCcEEEEEEcCCCceEEEEEe
Q 004866 172 IAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVY---VNIRHTK--DFHFVCVHTFSTTSSKVFLIN 246 (726)
Q Consensus 172 ~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~---~~~~~s~--Dg~~l~~~~~~~~~~~l~~~d 246 (726)
++|||||+.|++...+.......|+++++.+++....+..+....+. ..+.||| ||++| +.+.......||.++
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRDGWNHLYLYD 341 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTTSSCEEEEEE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccCCccEEEEEE
Confidence 99999999999987665445568999999887322333333222211 2468999 99965 455555668899999
Q ss_pred CCCCCCCeEEeeccCCceE--EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEee
Q 004866 247 AADPFSGLTLIWECEGLAH--CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF 324 (726)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~--~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~ 324 (726)
..+ +..+.++.....+. ..++++|+.|++.++.++. ....|+.++++ . +..+.+. +.....-..++.
T Consensus 342 ~~~--~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~-~---~~~~~l~-~~~~~~~~~~sp 410 (706)
T 2z3z_A 342 TTG--RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP----LERHFYCIDIK-G---GKTKDLT-PESGMHRTQLSP 410 (706)
T ss_dssp TTS--CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT----TCBEEEEEETT-C---CCCEESC-CSSSEEEEEECT
T ss_pred CCC--CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC----ceEEEEEEEcC-C---CCceecc-CCCceEEEEECC
Confidence 755 44556655444333 4678999999998876432 13679999876 2 3344442 322222223444
Q ss_pred eCCEEEEEEEeCCe-eEEEEEecCC
Q 004866 325 CKTHMALILREGRT-YRLCSVSLPL 348 (726)
Q Consensus 325 ~~~~lv~~~~~~g~-~~l~~~~l~~ 348 (726)
.++++++....... ..++++++.+
T Consensus 411 dg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 411 DGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp TSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CCCEEEEEecCCCCCcEEEEEECCC
Confidence 45677777665444 4688998764
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=131.69 Aligned_cols=122 Identities=13% Similarity=0.100 Sum_probs=87.3
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC-CCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG-AYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hG-g~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
+...+...+| .+..+ +.+ ..|+||++|| |... ....|......|. +||.|+.+|+||+|.+..
T Consensus 22 ~~~~v~~~~~-~~~~~--~~~------~~p~vv~lHG~G~~~-~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~----- 85 (292)
T 3l80_A 22 NKEMVNTLLG-PIYTC--HRE------GNPCFVFLSGAGFFS-TADNFANIIDKLP-DSIGILTIDAPNSGYSPV----- 85 (292)
T ss_dssp EEEEECCTTS-CEEEE--EEC------CSSEEEEECCSSSCC-HHHHTHHHHTTSC-TTSEEEEECCTTSTTSCC-----
T ss_pred CcceEEecCc-eEEEe--cCC------CCCEEEEEcCCCCCc-HHHHHHHHHHHHh-hcCeEEEEcCCCCCCCCC-----
Confidence 3445555454 56543 221 2389999997 3322 2235666666665 799999999999997641
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
......+++|+.+.+..++++- ..+++.++|||+||.+++.++.++|++++++|+..|.
T Consensus 86 --~~~~~~~~~~~~~~l~~~l~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 144 (292)
T 3l80_A 86 --SNQANVGLRDWVNAILMIFEHF--KFQSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPT 144 (292)
T ss_dssp --CCCTTCCHHHHHHHHHHHHHHS--CCSEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCC
T ss_pred --CCcccccHHHHHHHHHHHHHHh--CCCCeEEEEEchhHHHHHHHHHhCchheeeEEEECCC
Confidence 1122357888888888887653 3358999999999999999999999999999998854
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-11 Score=127.56 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=93.7
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHC---------CcEEEEEccCCCCCCCCccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR---------GWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~---------G~~v~~~d~RG~g~~g~~~~ 542 (726)
..||.+|++..+.+++ +..|.||++||.+++. ..|...+..|.+. ||.|+++|.||+|.+...
T Consensus 74 ~i~g~~i~~~~~~~~~----~~~~plll~HG~~~s~--~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~~-- 145 (388)
T 4i19_A 74 EIDGATIHFLHVRSPE----PDATPMVITHGWPGTP--VEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGPL-- 145 (388)
T ss_dssp EETTEEEEEEEECCSS----TTCEEEEEECCTTCCG--GGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCCC--
T ss_pred EECCeEEEEEEccCCC----CCCCeEEEECCCCCCH--HHHHHHHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCCC--
Confidence 4589999875554432 3357899999988754 4577778888776 999999999999865332
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
......+.++.+.+..++++ ...+++.++|+|+||.+++.++.++|++++++|+..|+.
T Consensus 146 -----~~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 146 -----KSAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp -----SSCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred -----CCCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 11134688888888777765 233689999999999999999999999999999988654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-10 Score=132.29 Aligned_cols=208 Identities=13% Similarity=0.086 Sum_probs=139.0
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc--------ccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV--------RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~--------~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.++|||++++|.....|.+...||+++..+|+...++... ....++|||||+.|+|+..........|++++
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 3579999999998877766778999999888655543211 35788999999999999876655567999999
Q ss_pred cCCCCce-eEEeeecCCceEEEEEEcCCCcEEEEEEcCCC----------ceEEEEEeCCCCCCCeEEeeccCC----ce
Q 004866 200 IGSTDED-ALLLEESNENVYVNIRHTKDFHFVCVHTFSTT----------SSKVFLINAADPFSGLTLIWECEG----LA 264 (726)
Q Consensus 200 l~t~~~~-~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~----------~~~l~~~d~~~~~~~~~~l~~~~~----~~ 264 (726)
+.+++.. .... .... +.+++|||||+.|++.+.... ..+||++++.++..+.+.+....+ ..
T Consensus 154 l~tg~~~~~~~~--~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 154 VDSGEWSKVDVI--EGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp TTTCCBCSSCCB--SCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred CCCCCCcCCccc--Cccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 9887521 1011 1111 135789999999999887543 467999999885433345544322 23
Q ss_pred EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeC-CeeEEEE
Q 004866 265 HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREG-RTYRLCS 343 (726)
Q Consensus 265 ~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~-g~~~l~~ 343 (726)
...+++||+.+++.++.... ...|+.++.. .+.++.+..+.. .....+...++ +++..+.+ +...|++
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~-----~~~l~~~~~~----~~~~~~l~~~~~-~~~~~~~~~g~-l~~~s~~~~~~~~l~~ 299 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWS-----ENDVYWKRPG----EKDFRLLVKGVG-AKYEVHAWKDR-FYVLTDEGAPRQRVFE 299 (695)
T ss_dssp EEEECTTSCCEEEEEEETTT-----EEEEEEECTT----CSSCEEEEECSS-CCEEEEEETTE-EEEEECTTCTTCEEEE
T ss_pred EEEECCCCCEEEEEEeCCCC-----ceEEEEEcCC----CCceEEeecCCC-ceEEEEecCCc-EEEEECCCCCCCEEEE
Confidence 45678999998888764411 3567777653 246777765443 22333333445 66665544 3568999
Q ss_pred EecCCC
Q 004866 344 VSLPLP 349 (726)
Q Consensus 344 ~~l~~~ 349 (726)
++++++
T Consensus 300 ~d~~~~ 305 (695)
T 2bkl_A 300 VDPAKP 305 (695)
T ss_dssp EBTTBC
T ss_pred EeCCCC
Confidence 998643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-09 Score=124.01 Aligned_cols=250 Identities=11% Similarity=0.020 Sum_probs=157.4
Q ss_pred CeeECCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCC
Q 004866 54 PLRWGPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDH 133 (726)
Q Consensus 54 p~~~g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG 133 (726)
++++|.++.|+....|.+...++..... +++. +-+. +. ....+.++|| ||
T Consensus 136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~---------------------tg~~-~~~~--~~-----~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 136 FSRDGRILAYSLSLAGSDWREIHLMDVE---------------------SKQP-LETP--LK-----DVKFSGISWL-GN 185 (693)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEEEETT---------------------TCSE-EEEE--EE-----EEESCCCEEE-TT
T ss_pred ECCCCCEEEEEEecCCCceEEEEEEECC---------------------CCCC-Cccc--cC-----CceeccEEEe-CC
Confidence 4567788888877777776666665542 1221 1111 11 1113567899 99
Q ss_pred CEEEEEEeCCC--------CcEEEEEEEECCCCce--ecccc-cc----ccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 134 KFLAYTMYDKD--------NDYFTLSVRNLNSGAL--CSKPQ-AV----RVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 134 ~~la~~~~~~g--------~e~~~l~v~dl~tg~~--~~~~~-~~----~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
+.|+|+..... ....+|+++++.++.. +.+.. .. .+.++.|||||++|+++..... ...+||++
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST-SGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS-SCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC-CCcEEEEE
Confidence 99999986532 3346799999988753 22222 11 2457899999999999876432 33689999
Q ss_pred EcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCC-CeEEeeccCCceEEeeeecCCEE
Q 004866 199 IIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFS-GLTLIWECEGLAHCIVEHHEGFL 275 (726)
Q Consensus 199 ~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~-~~~~l~~~~~~~~~~~~~~g~~l 275 (726)
++.++. .-+.+....+..+. + ++++|++|+|.++... ...|+.+|++++.. .++.+.+...... .++++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~--~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVS--L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEE--E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEE--E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEE
Confidence 998764 22333322222222 2 6889999999888654 47899999987532 2466776665555 888999999
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEee--eCCEEEEEEEeCCe-eEEEEEecCCC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF--CKTHMALILREGRT-YRLCSVSLPLP 349 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~--~~~~lv~~~~~~g~-~~l~~~~l~~~ 349 (726)
++....++ ..+|+.++++ . ...+.+..+ ....+..+.. .++.+++....... ..++.+|+.++
T Consensus 341 v~~~~~~g------~~~l~~~d~~-g---~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 341 FAEYMVDA------TARVEQFDYE-G---KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEEETT------EEEEEEECTT-S---CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEEECC------eeEEEEEECC-C---CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 88877553 3568888775 1 222333222 2233444443 35677777665333 58899988654
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=126.92 Aligned_cols=149 Identities=8% Similarity=-0.069 Sum_probs=92.9
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCCcee-EEEEeCCcccccccccCCCCCCChhhhcc-cCCCCChhHHHHHHhcC
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFR-AVVLEVPFLDATNTLLYPILPLIAADYEE-FGYPGDIDDFHAIRNYS 645 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~p~~d~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~s 645 (726)
-.+|++||+|+|+|+||+|++.++.++|++|+ ++++.++....... . .. ....... ++.+...+......+.+
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~--~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCAR--N-QY--YTSCMYNGYPSITTPTANMKSWSGN 80 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTS--S-SC--GGGGSTTCCCCCHHHHHHHHHHBTT
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccc--h-HH--HHHHhhccCCCCCCHHHHHHHhhcc
Confidence 35799999999999999999999999999999 77666653211100 0 00 0000000 11111112221122214
Q ss_pred cccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCc-hh---------------
Q 004866 646 PYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEEN-RY--------------- 707 (726)
Q Consensus 646 p~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~-~~--------------- 707 (726)
++..+.+....|+||+||..|++||+.++++++++|++.+.. ..+.+ ++++||++.. ..
T Consensus 81 ~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~---~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi 157 (318)
T 2d81_A 81 QIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNS---ANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYI 157 (318)
T ss_dssp TBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCG---GGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCE
T ss_pred cCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCC---cceEEEEeCCCCCCCccCCcccCccccccCCCCcc
Confidence 555544312358899999999999999999999999987621 13433 8999998543 21
Q ss_pred --hHHHHHHHHHHHHHHhh
Q 004866 708 --LQCKESALETAFLIKMM 724 (726)
Q Consensus 708 --~~~~~~~~~~~fl~~~l 724 (726)
..+.....++.||...|
T Consensus 158 ~~~~~d~~~~i~~ff~g~~ 176 (318)
T 2d81_A 158 SNCNYDGAGAALKWIYGSL 176 (318)
T ss_dssp EECSSCHHHHHHHHHHSSC
T ss_pred cCCCChHHHHHHHHHhccC
Confidence 03556667788886543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-09 Score=110.18 Aligned_cols=233 Identities=9% Similarity=-0.012 Sum_probs=146.5
Q ss_pred cEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC-CCceeEEeeecCCceEEEEEE
Q 004866 146 DYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS-TDEDALLLEESNENVYVNIRH 223 (726)
Q Consensus 146 e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t-~~~~~lv~~~~d~~~~~~~~~ 223 (726)
....|+++|+.+++...+.. ...+..++|+|||+.|++.. + ..|+++++.+ ++.. .+...........+.|
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPE-KVDTGFATICNNDHGI 92 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCE-ECCCTTCCCBCSCCEE
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCce-EeccccccccccceEE
Confidence 34679999999998765443 44677899999999998863 2 3799999988 5432 2222221122234789
Q ss_pred cCCCcEEEEEEcCC-CceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCC
Q 004866 224 TKDFHFVCVHTFST-TSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASF 302 (726)
Q Consensus 224 s~Dg~~l~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~ 302 (726)
||||++|++..... ....||.+++.+ +..+.+..........++++|+.|++....++ ..+|+.++.. .
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~l~~~~~~-~- 162 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTG--GTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ------VFDIYSMDID-S- 162 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTC--CCCEECCSSSSEEEEEECTTSSEEEEEEEETT------EEEEEEEETT-T-
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCC--CceEEeecCCCccceEECCCCCEEEEEECCCC------ceEEEEEECC-C-
Confidence 99999999888543 457899999877 34555554444334467889999888776543 3678888775 2
Q ss_pred CCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCC-ceeeeecCCC
Q 004866 303 PSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK-YVSQIVPGPN 379 (726)
Q Consensus 303 ~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~ 379 (726)
.....+... ...+..+.+. ++.|++....++..+|+.+++..+. + ..+.... .... ..
T Consensus 163 --~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~------~-----~~~~~~~~~~~~----~~ 223 (297)
T 2ojh_A 163 --GVETRLTHG--EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS------V-----ERITDSAYGDWF----PH 223 (297)
T ss_dssp --CCEEECCCS--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------E-----EECCCCSEEEEE----EE
T ss_pred --CcceEcccC--CCccccceECCCCCEEEEEecCCCCccEEEECCCCCC------c-----EEEecCCcccCC----eE
Confidence 233333222 2334455544 4567776666788888888765321 1 1111111 1111 23
Q ss_pred CcCCCcEEEEEEccCC-------CCceEEEEECCCCeEEEEE
Q 004866 380 YDYYSSTMRFAISSPV-------MPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 380 ~~~~~~~~~~~~ss~~-------~P~~~~~~d~~~~~~~~~~ 414 (726)
+++++..+++...... ....++.+|+.+++...+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 4567777766554322 2367999999988766554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-09 Score=110.06 Aligned_cols=223 Identities=12% Similarity=0.027 Sum_probs=145.1
Q ss_pred CeeECCeEEEEEecCCcc---------eEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEe
Q 004866 54 PLRWGPWLYYRRVEEGKQ---------YLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYE 124 (726)
Q Consensus 54 p~~~g~~~yy~~~~~g~~---------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~ 124 (726)
..++|+|+||.....+.+ ...+|+..... ...+.|.+. .+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg--------------------~~~~~l~~~------~~----- 108 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG--------------------HGSTVLDPD------PC----- 108 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTS--------------------CCCEEEECS------CE-----
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC--------------------CcceEeecC------Cc-----
Confidence 357899999998776532 23466665432 223333321 11
Q ss_pred eceeeCCCCCEEEEEE-eCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTM-YDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~-~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
..|||+|++|+|+. +..+ ...|+.+++++.+...++.... ..|++||+.|||+.. ...+||+.++.+.
T Consensus 109 --~~~s~~g~~Iy~~~~~~~~--~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~----g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 109 --IYASLIGNYIYYLHYDTQT--ATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNP----KNGQLYRYDTASQ 177 (302)
T ss_dssp --EEEEEETTEEEEEEESSSS--CEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEEECT----TTCCEEEEETTTT
T ss_pred --cEEEEeCCEEEEEeecCCC--CceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEEEeC----CCceEEEEECCCC
Confidence 15899999999985 2333 4679999999877665543222 456889999999842 2348999999776
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcc
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAK 283 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~ 283 (726)
... .++. + ..+. + ++|+|++|+++..... ..|+++++++ +..+.|+... ...+++.|+.||+.++...
T Consensus 178 ~~~-~l~~--~-~~~~-~-~~P~g~~iy~t~~~~~-~~I~~~~ldG--~~~~~Lt~~~---~~~~~~~g~~Iy~~~~~~~ 245 (302)
T 3s25_A 178 SEA-LFYD--C-NCYK-P-VVLDDTNVYYMDVNRD-NAIVHVNINN--PNPVVLTEAN---IEHYNVYGSLIFYQRGGDN 245 (302)
T ss_dssp EEE-EEEC--S-CEEE-E-EEEETTEEEEEEGGGT-TEEEEECSSS--CCCEECSCSC---EEEEEEETTEEEEEECSSS
T ss_pred CEE-EEeC--C-Cccc-e-eeecCCEEEEEEcCCC-cEEEEEECCC--CCeEEEeCCC---cceEEECCCEEEEEECCCC
Confidence 433 3443 2 2222 2 4699999999876543 7899999988 3455565322 2457889999998876542
Q ss_pred cCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 284 EGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
..|++++++ . ..-+.|. .. .+..+.+++++|+++....+. |+++.++
T Consensus 246 -------~~i~~~~~D-G---~~r~~l~-~~---~~~~i~i~~d~Iy~td~~~~~--i~~~~~d 292 (302)
T 3s25_A 246 -------PALCVVKND-G---TGFKELA-KG---EFCNINVTSQYVYFTDFVSNK--EYCTSTQ 292 (302)
T ss_dssp -------CEEEEEETT-S---CCCEEEE-ES---CEEEEEECSSEEEEEETTTCC--EEEEESS
T ss_pred -------cEEEEEECC-C---CccEEee-CC---ccceEEEeCCEEEEEECCCCe--EEEEECC
Confidence 468999987 2 2224443 32 245788899999998765553 7777654
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-10 Score=116.07 Aligned_cols=117 Identities=11% Similarity=0.090 Sum_probs=85.1
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.+|.+|++.. .+.+ ...|.||++||..+.. ..|...+..|+ .+|.|+++|.||+|.+... ....
T Consensus 11 ~~g~~l~y~~-~~~G----~~~p~vvllHG~~~~~--~~w~~~~~~L~-~~~rvia~DlrGhG~S~~~--------~~~~ 74 (276)
T 2wj6_A 11 VFDNKLSYID-NQRD----TDGPAILLLPGWCHDH--RVYKYLIQELD-ADFRVIVPNWRGHGLSPSE--------VPDF 74 (276)
T ss_dssp ETTEEEEEEE-CCCC----CSSCEEEEECCTTCCG--GGGHHHHHHHT-TTSCEEEECCTTCSSSCCC--------CCCC
T ss_pred eCCeEEEEEE-ecCC----CCCCeEEEECCCCCcH--HHHHHHHHHHh-cCCEEEEeCCCCCCCCCCC--------CCCC
Confidence 4787776532 1112 1237899999976543 46777777765 5799999999999976422 1224
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-CCceeEEEEeCCc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-PDLFRAVVLEVPF 607 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~ 607 (726)
+++++.+.+..++++ .+-+++.++||||||.+++.++.++ |++++++|+..+.
T Consensus 75 ~~~~~a~dl~~ll~~--l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~ 128 (276)
T 2wj6_A 75 GYQEQVKDALEILDQ--LGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWL 128 (276)
T ss_dssp CHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCC
T ss_pred CHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEeccc
Confidence 677777666666654 2336899999999999999999999 9999999988653
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=138.08 Aligned_cols=224 Identities=13% Similarity=0.008 Sum_probs=128.8
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchH--HH-HHHHH-CCcEEEEEccCCCCCCCCccccc-c
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRS--EL-KSLLD-RGWVVAFADVRGGGGGGKKWHHD-G 545 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~--~~-~~l~~-~G~~v~~~d~RG~g~~g~~~~~~-~ 545 (726)
+.|...+. |+.|++...+++.|+||++|||.... ....|.. .. +.++. .|++|+.+|||.+. +|.--... .
T Consensus 102 sedcl~l~--v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~gf~~~~~~~ 178 (544)
T 1thg_A 102 NEDCLYLN--VFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAIT 178 (544)
T ss_dssp CSCCCEEE--EEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHH
T ss_pred CCCCeEEE--EEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-ccCCCccccc
Confidence 56775554 67787644456789999999974432 2222321 12 22332 58999999999754 11100000 0
Q ss_pred cccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--------CCceeEEEEeCCcccccccc
Q 004866 546 RRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--------PDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~p~~d~~~~~ 614 (726)
....+...+.|+.++++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|........
T Consensus 179 ~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~ 258 (544)
T 1thg_A 179 AEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYHDS 258 (544)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCSSS
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccCcC
Confidence 01233456899999999998752 36999999999999999998887752 56899999999854221111
Q ss_pred cCCCCCC--ChhhhcccCCCCCh---hHHHHHHhcCcccccccC--------CCCC--eEEEEecCCCCcChHHHHHHHH
Q 004866 615 LYPILPL--IAADYEEFGYPGDI---DDFHAIRNYSPYDNIQKD--------VLYP--AVLVTSSFNTRFGVWEAAKWVA 679 (726)
Q Consensus 615 ~~~~~~~--~~~~~~~~g~~~~~---~~~~~~~~~sp~~~i~~~--------~~~P--~lli~g~~D~~V~~~~~~~~~~ 679 (726)
...... ........|.+... +..+.+++.++...+... ...+ .+.+....|..+.+.++.++.+
T Consensus 259 -~~~~~~~~~~~~~~~~gc~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~ 337 (544)
T 1thg_A 259 -SSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELFR 337 (544)
T ss_dssp -CCSSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSCCCCCSSSSCSCHHHHHH
T ss_pred -ChHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhcCCHHHHHHhhhhcccccccccccccccceeeeCCcccCcCHHHHHh
Confidence 100111 11111223544321 345666666554322110 0000 0112223465566667777766
Q ss_pred HHHhcCCCCCCCcEEE--EcCCCCCCC
Q 004866 680 RVRESTIYDPKRPILL--NLTTDIVEE 704 (726)
Q Consensus 680 ~L~~~~~~~~~~~~~~--~~~~gH~~~ 704 (726)
+.+.++ .|+++ ..++||.+.
T Consensus 338 ~g~~~~-----vp~l~G~~~~Eg~~f~ 359 (544)
T 1thg_A 338 SGRYAK-----VPYISGNQEDEGTAFA 359 (544)
T ss_dssp TTCSCC-----CCEEEEEETBTTTTTG
T ss_pred cCCCCC-----ccEEEEeecCchhhhc
Confidence 655544 46777 778999764
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.1e-12 Score=138.25 Aligned_cols=134 Identities=21% Similarity=0.191 Sum_probs=93.0
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchHHHHHHHHCC-cEEEEEccC----CCCCCCCccccc
Q 004866 471 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRSELKSLLDRG-WVVAFADVR----GGGGGGKKWHHD 544 (726)
Q Consensus 471 ~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G-~~v~~~d~R----G~g~~g~~~~~~ 544 (726)
.+.|+..+. ++.|+. ..++.|+||++|||.... ....+......|+++| ++|+.+||| |.+..+.... .
T Consensus 80 ~~edcl~l~--v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~-~ 154 (498)
T 2ogt_A 80 PSEDGLYLN--IWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFG-E 154 (498)
T ss_dssp CBSCCCEEE--EEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTC-G
T ss_pred CCCCCcEEE--EEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhcc-c
Confidence 366776655 567763 346789999999986221 1112222346778776 999999999 4443322110 0
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCccc
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFLD 609 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d 609 (726)
.....+...+.|++++++|+.++. -.||+||.|+|+|+||.+++.++... ..+|+++|+.+|..+
T Consensus 155 ~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 155 AYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp GGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 011223456899999999998762 25999999999999999998888753 468999999999765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-08 Score=106.23 Aligned_cols=197 Identities=14% Similarity=0.043 Sum_probs=122.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..++|||||++|+++....+ .|+++|+++++.+.... ......++|+|||+.|+++... ...|+++++.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~----~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~ 146 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASS----TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG----DKTVSVINTV 146 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEETT
T ss_pred CccceEECCCCCEEEEEECCCC----EEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC----CCEEEEEECC
Confidence 3556789999999988754333 59999999998765433 3356789999999999887532 3489999998
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEec
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t~ 280 (726)
+++... .+..... ...+.|+|||++|++.... ...|+++|+.++ +.......... ....++++|+.+++...
T Consensus 147 ~~~~~~-~~~~~~~--~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 147 TKAVIN-TVSVGRS--PKGIAVTPDGTKVYVANFD--SMSISVIDTVTN--SVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp TTEEEE-EEECCSS--EEEEEECTTSSEEEEEETT--TTEEEEEETTTT--EEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred CCcEEE-EEecCCC--cceEEECCCCCEEEEEeCC--CCEEEEEECCCC--eEEEEEecCCCccceEECCCCCEEEEEec
Confidence 765222 2222222 2467899999999776543 356899999873 33333322222 23456788888887764
Q ss_pred CcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 281 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
... +..|..+++. . .+....++... .+..+.+. ++.|++....++ .++++|+.+
T Consensus 220 ~~~------~~~v~~~d~~-~---~~~~~~~~~~~--~~~~~~~s~dg~~l~~s~~~d~--~v~v~d~~~ 275 (391)
T 1l0q_A 220 DKY------FNTVSMIDTG-T---NKITARIPVGP--DPAGIAVTPDGKKVYVALSFXN--TVSVIDTAT 275 (391)
T ss_dssp CSS------CCEEEEEETT-T---TEEEEEEECCS--SEEEEEECTTSSEEEEEETTTT--EEEEEETTT
T ss_pred CcC------CCcEEEEECC-C---CeEEEEEecCC--CccEEEEccCCCEEEEEcCCCC--EEEEEECCC
Confidence 211 2346677765 2 22222333322 24444444 556767765554 566777764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-09 Score=122.01 Aligned_cols=255 Identities=11% Similarity=0.057 Sum_probs=153.9
Q ss_pred Ce-eECCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCC
Q 004866 54 PL-RWGPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPD 132 (726)
Q Consensus 54 p~-~~g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPD 132 (726)
++ ++|.++.|+....|.+...+|...... +.+ .+.+ .+.. ..+.+.||||
T Consensus 181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~--------------------g~~-~l~~--~~~~------~~~~~~WspD 231 (751)
T 2xe4_A 181 PAPPEHDLVAFSVDMSGNEVYTIEFKRISD--------------------PSQ-TIAD--KVSG------TNGEIVWGPD 231 (751)
T ss_dssp ECTTTTCEEEEEEESSSSSCEEEEEEETTC--------------------TTC-CCCC--CEEE------ECSCCEECSS
T ss_pred ecCCCCCEEEEEEeCCCCceEEEEEEECCC--------------------CCE-eCCc--cccC------ceeeEEEecC
Confidence 46 789999999888887777777776532 101 1111 1110 1346789999
Q ss_pred CCEEEEEEeCCCCcEEEEEEEECCCCcee--cccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ce
Q 004866 133 HKFLAYTMYDKDNDYFTLSVRNLNSGALC--SKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-ED 206 (726)
Q Consensus 133 G~~la~~~~~~g~e~~~l~v~dl~tg~~~--~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~ 206 (726)
|+.|+|+.........+||++++.++... .+.. ......+.|||||++|+|+.... ...+||++++.++. ..
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP--ETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS--SCEEEEEEESSSCTTCC
T ss_pred CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC--CCceEEEEECCCCCCCc
Confidence 99999997654444578999999987532 2211 12345689999999999987543 35689999998763 22
Q ss_pred --eEEeeecCCceEEEEEEcCCCcEEEEEEcCC--CceEEEEEeCCCCCCCeEE-eeccCCc-eEEeeeecCCEEEEEec
Q 004866 207 --ALLLEESNENVYVNIRHTKDFHFVCVHTFST--TSSKVFLINAADPFSGLTL-IWECEGL-AHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 207 --~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~--~~~~l~~~d~~~~~~~~~~-l~~~~~~-~~~~~~~~g~~l~~~t~ 280 (726)
+.+........+ ++.| .+|+.|+|.++.. ....||.+|++++ ..++. +.+...+ ....++..++.|++...
T Consensus 310 ~~~~l~~~~~~~~~-s~~~-~~g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~ 386 (751)
T 2xe4_A 310 TLEIVRPREKGVRY-DVQM-HGTSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVRSNYLVVAGR 386 (751)
T ss_dssp CEEESSCCCTTCCE-EEEE-ETTTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEECSSEEEEEEE
T ss_pred eeEEeecCCCCceE-EEee-eeCCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEECCEEEEEEE
Confidence 333322222211 2222 2488898888875 4579999999763 23343 4433333 22345567888888877
Q ss_pred CcccCCCCCCeEEEEeeCCC--C-CCCCC-ceEEeecCCCceEEEE------eeeCCEEEEEEEeCCe-eEEEEEecCCC
Q 004866 281 AAKEGQEADNHYLLRCPVDA--S-FPSRT-WESVFIDDQGLVVEDV------DFCKTHMALILREGRT-YRLCSVSLPLP 349 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~--~-~~~~~-~~~v~~~~~~~~l~~~------~~~~~~lv~~~~~~g~-~~l~~~~l~~~ 349 (726)
.++ ..+|+.+++.. . -..+. .+.+..+... ...++ +..++.+++....-.. +.++.+++.++
T Consensus 387 ~~g------~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 387 RAG------LTRIWTMMADSQDGVFKAGTGLREVVMEEPI-FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp ETT------EEEEEEEECCTTTSCCCTTTCCEECCCCCSS-CEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred eCC------EEEEEEEecccccccccCCccceEECCCCce-eEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 654 35677777510 0 01122 3444222222 23344 2345677777776555 47888887654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-08 Score=105.73 Aligned_cols=242 Identities=9% Similarity=0.000 Sum_probs=148.0
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|+++...++ .|+++|+.+++.+.... ......++|+|||+.|+++... ...|+++++.+
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~----~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~----~~~v~v~d~~~ 105 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTS 105 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCC----eEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECC----CCEEEEEECCC
Confidence 456789999999977754444 59999999998765433 3356789999999999887533 24799999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE-eeccCCceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL-IWECEGLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~-l~~~~~~~~~~~~~~g~~l~~~t~~ 281 (726)
++... .+.... ....+.|+|||++|++.... ...|+++|+.++ +... +..........++++|+.+++....
T Consensus 106 ~~~~~-~~~~~~--~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 106 NTVAG-TVKTGK--SPLGLALSPDGKKLYVTNNG--DKTVSVINTVTK--AVINTVSVGRSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp TEEEE-EEECSS--SEEEEEECTTSSEEEEEETT--TTEEEEEETTTT--EEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred CeEEE-EEeCCC--CcceEEECCCCCEEEEEeCC--CCEEEEEECCCC--cEEEEEecCCCcceEEECCCCCEEEEEeCC
Confidence 65222 222222 23468899999999777643 347999999873 3322 2222222344567888888776543
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCCCCCCcceeecc
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPLPAGKGVVHLKE 359 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~ 359 (726)
+ ..|..+++. . ......+... ..+..+.+. ++.|++.....+...|+++|+.++. .+
T Consensus 179 ~--------~~v~~~d~~-~---~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~-----~~-- 237 (391)
T 1l0q_A 179 S--------MSISVIDTV-T---NSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-----IT-- 237 (391)
T ss_dssp T--------TEEEEEETT-T---TEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-----EE--
T ss_pred C--------CEEEEEECC-C---CeEEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe-----EE--
Confidence 3 236667765 2 2222333322 234444444 4566666543345678888876432 11
Q ss_pred cccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 360 LHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 360 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
..++.......+ .+++++..++++.+.. ..+..+|+.+++..
T Consensus 238 ---~~~~~~~~~~~~----~~s~dg~~l~~s~~~d---~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 238 ---ARIPVGPDPAGI----AVTPDGKKVYVALSFX---NTVSVIDTATNTIT 279 (391)
T ss_dssp ---EEEECCSSEEEE----EECTTSSEEEEEETTT---TEEEEEETTTTEEE
T ss_pred ---EEEecCCCccEE----EEccCCCEEEEEcCCC---CEEEEEECCCCcEE
Confidence 122222222222 2356677665554332 68999999888754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.9e-10 Score=124.91 Aligned_cols=198 Identities=11% Similarity=-0.020 Sum_probs=128.0
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-c-cccceeEEecCCCEEEEEEec-CCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-A-VRVSNIAWAKDGQALIYVVTD-QNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~-~~~~~~~WspDg~~l~y~~~~-~~~~~~~l~~~~l 200 (726)
+..+++||||++|||+.+.+| ...|| ++++|+..+++. . .....+.|||| .|+|+... ......+||.+++
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g--~~~lw--~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEG--SVNAY--LYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETT--EEEEE--EEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred hheeecCCCCCeEEEEEccCC--ceeEE--EEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 445679999999999987666 34455 457888777765 2 35678999999 57776553 3334568999988
Q ss_pred --CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEE
Q 004866 201 --GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLF 278 (726)
Q Consensus 201 --~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~ 278 (726)
... .. .+.. ..... ..+|||||+.+++.+....... ++|+++ ++.+.+..... ....++|||+.+++.
T Consensus 98 ~~~g~-~~-~l~~-~~~~~--~~~~s~dg~~~~~~s~~~~~~~--l~d~~~--g~~~~l~~~~~-~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 98 SRPGE-EQ-RLEA-VKPMR--ILSGVDTGEAVVFTGATEDRVA--LYALDG--GGLRELARLPG-FGFVSDIRGDLIAGL 167 (582)
T ss_dssp TSTTC-CE-ECTT-SCSBE--EEEEEECSSCEEEEEECSSCEE--EEEEET--TEEEEEEEESS-CEEEEEEETTEEEEE
T ss_pred cCCCc-cc-cccC-CCCce--eeeeCCCCCeEEEEecCCCCce--EEEccC--CcEEEeecCCC-ceEEECCCCCEEEEE
Confidence 433 22 2211 11111 3588999998888776554444 447776 45556654443 556788999999988
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEe--eeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVD--FCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~--~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
++..+. ...|+.++++ .+.++.+..+. ..+..+. +.++.|+ ....+|..+|+++|++++
T Consensus 168 ~~~~~~-----~~~i~~~d~~----~g~~~~l~~~~--~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 168 GFFGGG-----RVSLFTSNLS----SGGLRVFDSGE--GSFSSASISPGMKVTA-GLETAREARLVTVDPRDG 228 (582)
T ss_dssp EEEETT-----EEEEEEEETT----TCCCEEECCSS--CEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTC
T ss_pred EEcCCC-----CeEEEEEcCC----CCCceEeecCC--CccccceECCCCCEEE-EccCCCeeEEEEEcCCCC
Confidence 875432 2568888876 24456554332 2334444 4456666 666677789999998764
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=135.12 Aligned_cols=132 Identities=19% Similarity=0.137 Sum_probs=93.8
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchHHHHHHHH-CCcEEEEEccC-CCCCCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRSELKSLLD-RGWVVAFADVR-GGGGGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~-~G~~v~~~d~R-G~g~~g~~~~~~~~~~ 548 (726)
+.|+..+. |+.|++...+++.|+||++|||..... ...|.. ..|++ +|++|+.+||| |..+++...... .
T Consensus 95 ~edcl~ln--v~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~--~~la~~~g~vvv~~nYRlg~~gf~~~~~~~---~ 167 (542)
T 2h7c_A 95 SEDCLYLN--IYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGIWGFFSTGDEH---S 167 (542)
T ss_dssp ESCCCEEE--EEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSSTT---C
T ss_pred CCCCcEEE--EEECCCCCCCCCCCEEEEECCCcccCCCccccCH--HHHHhcCCEEEEecCCCCccccCCCCCccc---C
Confidence 56775554 678876544567999999999753321 122332 23554 79999999999 433333221111 1
Q ss_pred CCCCcHHHHHHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCcccc
Q 004866 549 KKLNSIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~ 610 (726)
.+...+.|..++++|+.++ -..||+||.|+|+|+||++++.++.. .+.+|+++|+.+|....
T Consensus 168 ~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 168 RGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 2334689999999999875 23699999999999999999998886 36799999999998754
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=137.38 Aligned_cols=223 Identities=14% Similarity=0.093 Sum_probs=125.4
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchH--HH-HHHH-HCCcEEEEEccCCCC-CCCCcccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRS--EL-KSLL-DRGWVVAFADVRGGG-GGGKKWHHDG 545 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~--~~-~~l~-~~G~~v~~~d~RG~g-~~g~~~~~~~ 545 (726)
+.|...+ .|+.|++...+++.|+||++|||..... ...|.. .. ..++ ..|++|+.+|||.+. ++... .+..
T Consensus 94 sedcl~l--~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~-~~~~ 170 (534)
T 1llf_A 94 SEDCLTI--NVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAG-DDIK 170 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCS-HHHH
T ss_pred CCCCeEE--EEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCc-cccc
Confidence 5676554 4678876444567899999999753321 122321 12 2233 369999999999653 11100 0000
Q ss_pred cccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--------CCceeEEEEeCCcccccccc
Q 004866 546 RRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--------PDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~p~~d~~~~~ 614 (726)
....+...+.|..++++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|........
T Consensus 171 ~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~~~~~~~~ 250 (534)
T 1llf_A 171 AEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPSDPV 250 (534)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCCCCT
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccCcccCCCc
Confidence 01234457899999999998752 25999999999999999888877653 56899999999853211100
Q ss_pred cCCCCC--CChhhhcccCCCCChhHHHHHHhcCcccccccCCCC--------CeEEEEecCCCCcChHHHHHHHHHHHhc
Q 004866 615 LYPILP--LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLY--------PAVLVTSSFNTRFGVWEAAKWVARVRES 684 (726)
Q Consensus 615 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~--------P~lli~g~~D~~V~~~~~~~~~~~L~~~ 684 (726)
..... .........|.+...+..+.+++.++-..+....+. ..+...-..|..+.+.+..++.++.+.+
T Consensus 251 -~~~~~~~~~~~~~~~~gc~~~~~~l~cLr~~~~~~l~~a~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~~ 329 (534)
T 1llf_A 251 -DGTYGNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPRPDGKNITDDMYKLVRDGKYA 329 (534)
T ss_dssp -TSHHHHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCCTTSTTTTSCSSCCCCCSSSSCSCHHHHHHTTCSC
T ss_pred -ChHHHHHHHHHHHHHhCCCCcHHHHHHHHcCCHHHHHHHHHhcccccccccccccceeecCCccccCCHHHHHHcCCCC
Confidence 00000 000111224554322345666665543322110000 0111222346455556666666555444
Q ss_pred CCCCCCCcEEE--EcCCCCCC
Q 004866 685 TIYDPKRPILL--NLTTDIVE 703 (726)
Q Consensus 685 ~~~~~~~~~~~--~~~~gH~~ 703 (726)
+ .|+++ ..++||.+
T Consensus 330 ~-----vp~l~G~~~~Eg~~f 345 (534)
T 1llf_A 330 S-----VPVIIGDQNDEGTIF 345 (534)
T ss_dssp C-----CCEEEEEETBTTHHH
T ss_pred C-----CCEEEEEecCchhhh
Confidence 4 47777 67888864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-08 Score=121.62 Aligned_cols=152 Identities=10% Similarity=-0.016 Sum_probs=98.0
Q ss_pred EeeceeeCCCCCEEEEEEeCC-CCcEEEEEEEECCCCceecccc-cccc-------ceeEEecCCCEEEEEEecCC--CC
Q 004866 123 YEELSEVSPDHKFLAYTMYDK-DNDYFTLSVRNLNSGALCSKPQ-AVRV-------SNIAWAKDGQALIYVVTDQN--KR 191 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~-g~e~~~l~v~dl~tg~~~~~~~-~~~~-------~~~~WspDg~~l~y~~~~~~--~~ 191 (726)
.+..++|||||++|||++... .....+|+++|+++|+...++. .... ..++|||||+ |+|+..... ..
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~ 132 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSS 132 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTT
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCCcc
Confidence 467789999999999987651 1235789999999998777655 3334 6899999999 778765321 12
Q ss_pred CceEEEEEcCCCCceeEEe--------------ee---------------------------------cCCceEEEEEEc
Q 004866 192 PYQIYCSIIGSTDEDALLL--------------EE---------------------------------SNENVYVNIRHT 224 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~--------------~~---------------------------------~d~~~~~~~~~s 224 (726)
..+||.+++.++....+.. .. ........+.|+
T Consensus 133 ~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s 212 (1045)
T 1k32_A 133 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV 212 (1045)
T ss_dssp CCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE
T ss_pred cceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe
Confidence 3479988876543111100 00 000011235677
Q ss_pred CCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEe
Q 004866 225 KDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 225 ~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t 279 (726)
+| .+++.+.......||.+++.+ ...+.+..........++++|+.+++..
T Consensus 213 ~d--~l~~~~~~dg~~~l~~~~~~g--~~~~~l~~~~~~~~~~~SpDG~~la~~~ 263 (1045)
T 1k32_A 213 GH--RIYFITDIDGFGQIYSTDLDG--KDLRKHTSFTDYYPRHLNTDGRRILFSK 263 (1045)
T ss_dssp TT--EEEEEECTTSSCEEEEEETTS--CSCEECCCCCSSCEEEEEESSSCEEEEE
T ss_pred CC--EEEEEEeccCceEEEEEeCCC--CcceEecCCCCcceeeEcCCCCEEEEEe
Confidence 66 666776666667899999876 3455555444333457789999888764
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=129.58 Aligned_cols=132 Identities=18% Similarity=0.024 Sum_probs=90.6
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCcc-chHHHHHHHH-CCcEEEEEccCCC-CCCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKR-WRSELKSLLD-RGWVVAFADVRGG-GGGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~-~G~~v~~~d~RG~-g~~g~~~~~~~~~~ 548 (726)
+.|...+. |+.|+.. .+++.|+||++|||........ .......|++ .|++|+.+|||.+ -+++... .....
T Consensus 93 ~edcl~l~--v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~~~ 167 (543)
T 2ha2_A 93 SEDCLYLN--VWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREA 167 (543)
T ss_dssp ESCCCEEE--EEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSC
T ss_pred CCcCCeEE--EeecCCC-CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCCCC
Confidence 56876665 5567652 3456899999999753221111 1222356665 7999999999943 1222111 00112
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~ 608 (726)
.+...+.|++++++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 168 ~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 168 PGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 23346899999999998752 25999999999999999998888753 47899999999964
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-09 Score=108.26 Aligned_cols=211 Identities=11% Similarity=-0.015 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcE---EEEEccCCCCC-----C--CCcccc---cccccCCCCcH----HHH
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWV---VAFADVRGGGG-----G--GKKWHH---DGRRTKKLNSI----KDF 557 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~d~RG~g~-----~--g~~~~~---~~~~~~~~~~~----~D~ 557 (726)
|.||++||..+.. ..|...+..|.++|++ |+.+++++.|. . +..+.. .+... ....+ +|+
T Consensus 4 ~pvvllHG~~~~~--~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~a~~l 80 (254)
T 3ds8_A 4 IPIILIHGSGGNA--SSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQ-NQATPDDWSKWL 80 (254)
T ss_dssp CCEEEECCTTCCT--TTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESS-TTSCHHHHHHHH
T ss_pred CCEEEECCCCCCc--chHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecC-CCCCHHHHHHHH
Confidence 4467899865543 4688889999998764 44444443331 0 001110 00001 11234 444
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC-----ceeEEEEeCCcccccccccCCCCCCChhhhcccCCC
Q 004866 558 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-----LFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYP 632 (726)
Q Consensus 558 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~ 632 (726)
.++++.|.++- .-+++.++||||||.+++.++.++|+ +++++|+.++..+........ . .....+.|
T Consensus 81 ~~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~-~-----~~~~~~~p 152 (254)
T 3ds8_A 81 KIAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNG-M-----DLSFKKLP 152 (254)
T ss_dssp HHHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHC-S-----CTTCSSCS
T ss_pred HHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccc-c-----ccccccCC
Confidence 45557776542 22689999999999999999999998 899999998876544221100 0 01111333
Q ss_pred CChhHHHHHHhcCcccccccCCCCCeEEEEec------CCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-EcCCCCCCCc
Q 004866 633 GDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSS------FNTRFGVWEAAKWVARVRESTIYDPKRPILL-NLTTDIVEEN 705 (726)
Q Consensus 633 ~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~gH~~~~ 705 (726)
.....+..+... ...+.+ +.|++.|+|. .|..||+..+..+...+..+... ...+.+ ..+++|....
T Consensus 153 ~~~~~~~~~~~~--~~~~~~--~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~--~~~~~~~g~~a~Hs~l~ 226 (254)
T 3ds8_A 153 NSTPQMDYFIKN--QTEVSP--DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKA--YIEDIQVGEDAVHQTLH 226 (254)
T ss_dssp SCCHHHHHHHHT--GGGSCT--TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSE--EEEEEEESGGGCGGGGG
T ss_pred cchHHHHHHHHH--HhhCCC--CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcc--eEEEEEeCCCCchhccc
Confidence 322222222211 122222 5789999999 89999999998887777654311 011222 2347796443
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 004866 706 RYLQCKESALETAFLIKMM 724 (726)
Q Consensus 706 ~~~~~~~~~~~~~fl~~~l 724 (726)
. .-+....+..||.+..
T Consensus 227 ~--~~~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 227 E--TPKSIEKTYWFLEKFK 243 (254)
T ss_dssp G--SHHHHHHHHHHHHTCC
T ss_pred C--CHHHHHHHHHHHHHhc
Confidence 2 1134455677777643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-08 Score=124.53 Aligned_cols=190 Identities=9% Similarity=0.039 Sum_probs=120.4
Q ss_pred eeceeeC-CCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-cc-ccceeEEecCCCEEEEEEecCCCCCceEE-EEE
Q 004866 124 EELSEVS-PDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AV-RVSNIAWAKDGQALIYVVTDQNKRPYQIY-CSI 199 (726)
Q Consensus 124 ~~~~~~S-PDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~-~~~~~~WspDg~~l~y~~~~~~~~~~~l~-~~~ 199 (726)
+..++|| |||++||+.. .+ .|+++++.+++...+.. .. ....++|+ ||+.|+|... ...|| +++
T Consensus 298 v~~~~~S~pdG~~la~~~--~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d 365 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS--RG----QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYD 365 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE--TT----EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEE
T ss_pred cceeeecCCCCCEEEEEE--cC----EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEE
Confidence 4567899 9999999986 23 59999999988766543 33 56789999 9999999853 34899 899
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCc-eEEeeeecCCEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGL-AHCIVEHHEGFLYL 277 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~-~~~~~~~~g~~l~~ 277 (726)
+.++....+. ........+.|||||++|++.+.. ..|+++|+.+ ++.+.+... ... ....++|||+.|++
T Consensus 366 ~~~~~~~~l~---~~~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~t--g~~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 366 YRTGKAEKFE---ENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLET--GKPTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp TTTCCEEECC---CCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTT--CCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred CCCCCceEec---CCccceeeeEECCCCCEEEEECCC---CeEEEEECCC--CceEEeccCCCCCccceEECCCCCeEEE
Confidence 8776432222 222234568999999999987764 4799999988 445555532 222 34567899999888
Q ss_pred EecCc-ccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCC
Q 004866 278 FTDAA-KEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGR 337 (726)
Q Consensus 278 ~t~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g 337 (726)
.+... ..........|+.++++ . +....+..+.....-..+...+++|++....++
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~-~---g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDME-G---RKIFAATTENSHDYAPAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETT-T---TEEEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred EecCccccccCCCCCeEEEEECC-C---CcEEEeeCCCcccCCceEcCCCCEEEEEecccC
Confidence 76532 00000013467777776 2 223333322211111234445667777665443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-07 Score=98.90 Aligned_cols=238 Identities=7% Similarity=0.043 Sum_probs=136.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc-----------ccceeEEecCCCEEEEEEecCCCCCc
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV-----------RVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~-----------~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
..+.|||||++|+++....+ .|+++|+++++.+...... ....+.|+|||+.||+..... ..
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~ 164 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNS----AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK---ES 164 (353)
T ss_dssp CSEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS---SC
T ss_pred ceEEECCCCCEEEEEecCCC----EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC---Cc
Confidence 45689999999877643223 5999999999875432211 135689999999988875321 34
Q ss_pred eEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC---c--eEEee
Q 004866 194 QIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG---L--AHCIV 268 (726)
Q Consensus 194 ~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~--~~~~~ 268 (726)
.|+++++.+++... .+.... .....+.++|||++|++... ...++++|+.++. ....+..... . ....+
T Consensus 165 ~i~~~d~~~~~~~~-~~~~~~-~~~~~~~~s~dg~~l~~~~~---~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 165 VIWVVDGGNIKLKT-AIQNTG-KMSTGLALDSEGKRLYTTNA---DGELITIDTADNK-ILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EEEEEETTTTEEEE-EECCCC-TTCCCCEEETTTTEEEEECT---TSEEEEEETTTTE-EEEEEECCCSSSCCCEEEEEE
T ss_pred eEEEEcCCCCceEE-EecCCC-CccceEEECCCCCEEEEEcC---CCeEEEEECCCCe-EEEEEEcCCCCCCcccceEEE
Confidence 79999998765222 222111 11224678999999887654 4578999998732 1222222111 1 12456
Q ss_pred eecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 269 EHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 269 ~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+++|+.+|+..... ..|+.++.. + .+....+....... -.++..++++++....++ .|.++|+.+
T Consensus 239 s~dg~~l~~~~~~~--------~~v~~~d~~-~---~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~~~--~v~~~d~~~ 303 (353)
T 3vgz_A 239 DTARQRAFITDSKA--------AEVLVVDTR-N---GNILAKVAAPESLA-VLFNPARNEAYVTHRQAG--KVSVIDAKS 303 (353)
T ss_dssp ETTTTEEEEEESSS--------SEEEEEETT-T---CCEEEEEECSSCCC-EEEETTTTEEEEEETTTT--EEEEEETTT
T ss_pred CCCCCEEEEEeCCC--------CEEEEEECC-C---CcEEEEEEcCCCce-EEECCCCCEEEEEECCCC--eEEEEECCC
Confidence 78899887665322 347777775 2 22222222222111 234445567776654443 677788764
Q ss_pred CCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEcc-------CCCCceEEEEE
Q 004866 349 PAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISS-------PVMPDAVVDYD 404 (726)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss-------~~~P~~~~~~d 404 (726)
++ .+ ..++.+.....+ .++++++.+.++..+ ...|..+++++
T Consensus 304 ~~-----~~-----~~~~~~~~~~~~----~~s~dg~~l~v~~~~~~~~~~~~~~~~~v~~i~ 352 (353)
T 3vgz_A 304 YK-----VV-----KTFDTPTHPNSL----ALSADGKTLYVSVKQKSTKQQEATQPDDVIRIA 352 (353)
T ss_dssp TE-----EE-----EEEECCSEEEEE----EECTTSCEEEEEEECCCBTTBCCSSCEEEEEEE
T ss_pred Ce-----EE-----EEEecCCCCCeE----EEcCCCCEEEEEEcccccccccccCCCcEEEEe
Confidence 32 11 123333333322 245678877777665 34556666655
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-06 Score=90.02 Aligned_cols=246 Identities=9% Similarity=-0.019 Sum_probs=142.7
Q ss_pred eceeeCCCCCEEEEEEeCCCC---cEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 125 ELSEVSPDHKFLAYTMYDKDN---DYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~---e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
..+++||||++|+++. ..+. ....|+++|+++++.+.... ......+.|+|||+.+|++... ...|+++++
T Consensus 44 ~~~~~s~dg~~l~~~~-~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~ 118 (353)
T 3vgz_A 44 YEMAYSQQENALWLAT-SQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTV----NSAVTAIDA 118 (353)
T ss_dssp EEEEEETTTTEEEEEE-CCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETT----TTEEEEEET
T ss_pred cceEECCCCCEEEEEc-CCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecC----CCEEEEEeC
Confidence 3568999999996554 3322 13579999999998765433 3345789999999998887532 348999999
Q ss_pred CCCCc-eeEEeeecCC------ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-c-CCceEEeeeec
Q 004866 201 GSTDE-DALLLEESNE------NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-C-EGLAHCIVEHH 271 (726)
Q Consensus 201 ~t~~~-~~lv~~~~d~------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~-~~~~~~~~~~~ 271 (726)
.+++. ..+....... .....+.++|||++|++.... ....|+++|+.++ +.....+ . .......++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-KESVIWVVDGGNI--KLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-SSCEEEEEETTTT--EEEEEECCCCTTCCCCEEETT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-CCceEEEEcCCCC--ceEEEecCCCCccceEEECCC
Confidence 87752 2222111100 012457899999998877632 2457999999873 3333222 1 11233467789
Q ss_pred CCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec-C--CCceEEEEeee--CCEEEEEEEeCCeeEEEEEec
Q 004866 272 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID-D--QGLVVEDVDFC--KTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 272 g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~--~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l 346 (726)
|+.+|+... + ..|+.++.. + .+....+.. . ....+.++.+. ++.+++... +...|+++|+
T Consensus 196 g~~l~~~~~-~--------~~i~~~d~~-~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~ 260 (353)
T 3vgz_A 196 GKRLYTTNA-D--------GELITIDTA-D---NKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDT 260 (353)
T ss_dssp TTEEEEECT-T--------SEEEEEETT-T---TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEET
T ss_pred CCEEEEEcC-C--------CeEEEEECC-C---CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEEC
Confidence 998877643 2 236667765 2 111111221 1 22334444444 566665543 3357888887
Q ss_pred CCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 347 PLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
.+++ .+ ..++.+... +..++++++.+.++-.. -..++.+|..+++..
T Consensus 261 ~~~~-----~~-----~~~~~~~~~-----~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 261 RNGN-----IL-----AKVAAPESL-----AVLFNPARNEAYVTHRQ---AGKVSVIDAKSYKVV 307 (353)
T ss_dssp TTCC-----EE-----EEEECSSCC-----CEEEETTTTEEEEEETT---TTEEEEEETTTTEEE
T ss_pred CCCc-----EE-----EEEEcCCCc-----eEEECCCCCEEEEEECC---CCeEEEEECCCCeEE
Confidence 6542 11 122232211 12235667766554432 258999999887653
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-09 Score=102.00 Aligned_cols=212 Identities=14% Similarity=0.031 Sum_probs=125.6
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEEccCCCCCC--CCccc--------ccccccCCCC----cHHHH
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGW--VVAFADVRGGGGG--GKKWH--------HDGRRTKKLN----SIKDF 557 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~d~RG~g~~--g~~~~--------~~~~~~~~~~----~~~D~ 557 (726)
.+.||++||..+. ...|...+..|.++|| .|+.+|+++.|.. ...+. +-+....... ..+++
T Consensus 6 ~~pvvliHG~~~~--~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYGGS--ERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTTCC--GGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 3567789996553 3578889999999997 5889998877742 11110 0000111111 24567
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC-----ceeEEEEeCCcccccccccCCCCCCChhhhcccCCC
Q 004866 558 ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-----LFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYP 632 (726)
Q Consensus 558 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~ 632 (726)
.+++++|.++- ..+++.++||||||.+++.++.++|+ +++.+|+.++..+-...+.. +.....+...|.|
T Consensus 84 ~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~---~~~~~~~~~~g~p 158 (249)
T 3fle_A 84 KEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNE---NVNEIIVDKQGKP 158 (249)
T ss_dssp HHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSS---CTTTSCBCTTCCB
T ss_pred HHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccC---CcchhhhcccCCC
Confidence 77788887652 33689999999999999999988874 68888888766554322111 1111112233545
Q ss_pred CC-hhHHHHHHhcCcccccccCCCCCeEEEEec------CCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEc--CCCCCC
Q 004866 633 GD-IDDFHAIRNYSPYDNIQKDVLYPAVLVTSS------FNTRFGVWEAAKWVARVRESTIYDPKRPILLNL--TTDIVE 703 (726)
Q Consensus 633 ~~-~~~~~~~~~~sp~~~i~~~~~~P~lli~g~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~--~~gH~~ 703 (726)
.. ...+..+.+. ...+.. ...|+|.|+|. .|.+||...+..+...++..... -+.+. +. ++.|..
T Consensus 159 ~~~~~~~~~l~~~--~~~~p~-~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~--y~e~~-v~g~~a~Hs~ 232 (249)
T 3fle_A 159 SRMNAAYRQLLSL--YKIYCG-KEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKS--YQEMK-FKGAKAQHSQ 232 (249)
T ss_dssp SSCCHHHHHTGGG--HHHHTT-TTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSE--EEEEE-EESGGGSTGG
T ss_pred cccCHHHHHHHHH--HhhCCc-cCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCc--eEEEE-EeCCCCchhc
Confidence 32 2233333322 222332 46789999998 68999999888877777765421 01222 44 488965
Q ss_pred CchhhHHHHHHHHHHHH
Q 004866 704 ENRYLQCKESALETAFL 720 (726)
Q Consensus 704 ~~~~~~~~~~~~~~~fl 720 (726)
... .-+....+..||
T Consensus 233 l~~--n~~V~~~I~~FL 247 (249)
T 3fle_A 233 LHE--NKDVANEIIQFL 247 (249)
T ss_dssp GGG--CHHHHHHHHHHH
T ss_pred ccc--CHHHHHHHHHHh
Confidence 442 223333445665
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-09 Score=111.15 Aligned_cols=211 Identities=13% Similarity=0.058 Sum_probs=116.6
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
+..|.||++||.........|......| ..||.|+.+|+||+|..... ..+++++.+.+..++.+- ..
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G~G~~~~~----------~~~~~~~~~~~~~~l~~~-~~ 146 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPGFHGGQAL----------PATLTVLVRSLADVVQAE-VA 146 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTTSSTTCCE----------ESSHHHHHHHHHHHHHHH-HT
T ss_pred CCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHh-cC
Confidence 3458899999932112234577777777 78999999999999853211 124555544433333221 12
Q ss_pred CCcEEEEEecccHHHHHHHHHcC---CCceeEEEEeCCccccccc-ccCCCC-CCChh---hhcccCCCC-ChhHHHH--
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCC---PDLFRAVVLEVPFLDATNT-LLYPIL-PLIAA---DYEEFGYPG-DIDDFHA-- 640 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~d~~~~-~~~~~~-~~~~~---~~~~~g~~~-~~~~~~~-- 640 (726)
.+++.++|||+||.++..++.++ |+.++++|+..+....... ...... .+... ....+.... .......
T Consensus 147 ~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (319)
T 3lcr_A 147 DGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQV 226 (319)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHHH
Confidence 36899999999999999998877 8889999987765321110 000000 00000 000011110 0111111
Q ss_pred --HHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCch-hhHHHHHHHHH
Q 004866 641 --IRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENR-YLQCKESALET 717 (726)
Q Consensus 641 --~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~ 717 (726)
+.....+. .. .++.|+|+|+|.. +.+++.....+.+.+.... .+. ...+||...-. .+.......+.
T Consensus 227 ~~~~~~~~~~-~~-~i~~PvLli~g~~-~~~~~~~~~~~~~~~~~~~------~~~-~~~g~H~~~~~~~~~~~va~~i~ 296 (319)
T 3lcr_A 227 WCLELLRGWR-PE-GLTAPTLYVRPAQ-PLVEQEKPEWRGDVLAAMG------QVV-EAPGDHFTIIEGEHVASTAHIVG 296 (319)
T ss_dssp HHHHHTTTCC-CC-CCSSCEEEEEESS-CSSSCCCTHHHHHHHHTCS------EEE-EESSCTTGGGSTTTHHHHHHHHH
T ss_pred HHHHHHhcCC-CC-CcCCCEEEEEeCC-CCCCcccchhhhhcCCCCc------eEE-EeCCCcHHhhCcccHHHHHHHHH
Confidence 11111111 13 3789999999766 6677777777877776422 222 33557764432 33344455567
Q ss_pred HHHHHhh
Q 004866 718 AFLIKMM 724 (726)
Q Consensus 718 ~fl~~~l 724 (726)
+||.+..
T Consensus 297 ~fL~~~~ 303 (319)
T 3lcr_A 297 DWLREAH 303 (319)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 8887653
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.6e-09 Score=102.85 Aligned_cols=197 Identities=10% Similarity=0.043 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCC---cEEEEEccCCCCC--CCCccc--------ccccccCC------CCcHH
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRG---WVVAFADVRGGGG--GGKKWH--------HDGRRTKK------LNSIK 555 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G---~~v~~~d~RG~g~--~g~~~~--------~~~~~~~~------~~~~~ 555 (726)
+.||++||..+. ...|...+..|.++| +.|+.+++++.|. +...+. +-+...+. ....+
T Consensus 5 ~pvv~iHG~~~~--~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGSSAS--QNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCCGGG--HHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCCCCC--HHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 346778997653 356888889998877 6788777776663 111110 00001110 01236
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-----CCceeEEEEeCCcccccccccCCCCCCChhhhcccC
Q 004866 556 DFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-----PDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFG 630 (726)
Q Consensus 556 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g 630 (726)
++.+++++|.++- .-+++.++||||||.++...+.++ |+.++.+|+.++..+-... . +
T Consensus 83 ~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~----~-~---------- 145 (250)
T 3lp5_A 83 WLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMEST----S-T---------- 145 (250)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCC----C-S----------
T ss_pred HHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccc----c-c----------
Confidence 6777777776542 347899999999999999988876 6788888887765543210 0 0
Q ss_pred CCCChhHHHHHHhcCcccccccCCCCCeEEEEec----CCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-E--cCCCCCC
Q 004866 631 YPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSS----FNTRFGVWEAAKWVARVRESTIYDPKRPILL-N--LTTDIVE 703 (726)
Q Consensus 631 ~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~----~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~--~~~gH~~ 703 (726)
.... ..+..+.... ..+.+ ..|+++|.|. .|..||...+..+...++.... ....+ . ++++|..
T Consensus 146 ~~~~-~~~~~l~~~~--~~lp~--~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~----~~~~~~v~g~~a~H~~ 216 (250)
T 3lp5_A 146 TAKT-SMFKELYRYR--TGLPE--SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVK----HFTEITVTGANTAHSD 216 (250)
T ss_dssp SCCC-HHHHHHHHTG--GGSCT--TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSS----EEEEEECTTTTBSSCC
T ss_pred cccC-HHHHHHHhcc--ccCCC--CceEEEEEecCCCCCCceeeHHHHHHHHHHhccccc----ceEEEEEeCCCCchhc
Confidence 0111 2233333221 12222 5789999998 7899999888777776665321 12222 3 4577965
Q ss_pred CchhhHHHHHHHHHHHHH
Q 004866 704 ENRYLQCKESALETAFLI 721 (726)
Q Consensus 704 ~~~~~~~~~~~~~~~fl~ 721 (726)
.-. +. +....+..||.
T Consensus 217 l~e-~~-~v~~~I~~FL~ 232 (250)
T 3lp5_A 217 LPQ-NK-QIVSLIRQYLL 232 (250)
T ss_dssp HHH-HH-HHHHHHHHHTS
T ss_pred chh-CH-HHHHHHHHHHh
Confidence 432 11 44445667775
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=120.99 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=90.2
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchHHHHHHHH-CCcEEEEEccCCCC-CCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRSELKSLLD-RGWVVAFADVRGGG-GGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~d~RG~g-~~g~~~~~~~~~~ 548 (726)
+.|...+. |+.|+... ++.|+||++|||.... ...........|++ .|++|+.+|||.+. ++.... .....
T Consensus 89 ~edcl~ln--v~~P~~~~--~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 162 (529)
T 1p0i_A 89 SEDCLYLN--VWIPAPKP--KNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEA 162 (529)
T ss_dssp CSCCCEEE--EEEESSCC--SSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTS
T ss_pred CCcCCeEE--EeeCCCCC--CCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCC--CCCCC
Confidence 56775554 56776532 5789999999974322 11111122356676 79999999999431 111110 00111
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCccc
Q 004866 549 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFLD 609 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d 609 (726)
.+...+.|..++++|+.++- -.||+||.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 163 ~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 163 PGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 23346899999999998752 35999999999999999999988753 468999999999764
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-10 Score=125.95 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=87.9
Q ss_pred CCCCcEEEEEEEEc-----CCCCCCCC----ccEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEEccCCCC-CCCCc
Q 004866 472 SHDGISVPLTIIYS-----PKYKKENQ----NPGLLHGHGAYGELLD-KRWRSELKSLLDRGWVVAFADVRGGG-GGGKK 540 (726)
Q Consensus 472 s~dG~~i~~~l~~p-----~~~~~~~~----~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~~ 540 (726)
+.|...+ .|+.| ... ..++ .|+||++|||...... .........|+++|++|+.+|||.+. ++...
T Consensus 87 ~edcL~l--nv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~ 163 (551)
T 2fj0_A 87 SEACIHA--NIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSL 163 (551)
T ss_dssp CSCCCEE--EEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCC
T ss_pred CCCCeEE--EEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccC
Confidence 5566544 45677 322 2233 8999999997432211 11112335677899999999999642 22111
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCcc
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFL 608 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 608 (726)
. .....+...+.|+.++++|+.++- -.||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 164 ~---~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 164 N---STSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp S---SSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred c---ccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 0 011223457899999999998762 2599999999999999999998875 367999999999864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-07 Score=94.33 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=133.5
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce-ecccc-ccccce-eEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-CSKPQ-AVRVSN-IAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~-~~~~~-~~~~~~-~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.++|||||++|+++....+ .|+++|+++++. ..... ...... ++|+|||+.|+ +... ......|+++++.+
T Consensus 44 ~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~-~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQ----TLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTG-LNHPFNMQSYSFLK 117 (331)
T ss_dssp EEEECSSSCEEEEEESTTC----EEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCC-SSSSCEEEEEETTT
T ss_pred eEEEcCCCCEEEEEeCCCC----eEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecC-CCCcccEEEEECCC
Confidence 6789999998876643222 699999999986 33222 233445 89999999988 4222 21223899999987
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe-----EEeeccCCceEEeeeecCCEEEE
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL-----TLIWECEGLAHCIVEHHEGFLYL 277 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-----~~l~~~~~~~~~~~~~~g~~l~~ 277 (726)
++... .+..... ...+.|+|||++|++....... .++++++... +.. +.+..........++++|+.+|+
T Consensus 118 ~~~~~-~~~~~~~--~~~~~~spdg~~l~~~~~~~~~-~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 118 NKFIS-TIPIPYD--AVGIAISPNGNGLILIDRSSAN-TVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TEEEE-EEECCTT--EEEEEECTTSSCEEEEEETTTT-EEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred CCeEE-EEECCCC--ccceEECCCCCEEEEEecCCCc-eEEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 65222 2222222 2468899999998777654333 2455554432 222 12211222234567889988887
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCc---eEEeecCCCceEEE--EeeeCCEEEEEEEeCCeeEEEEEecCCCCCC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTW---ESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCSVSLPLPAGK 352 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~ 352 (726)
..... ..|..+++. . .+. ...++.. ..+.. ++..+++|++... +...|.++++.+++
T Consensus 193 ~~~~~--------~~v~v~d~~-~---~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~-- 254 (331)
T 3u4y_A 193 ANLIG--------NSIGILETQ-N---PENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGT-- 254 (331)
T ss_dssp EETTT--------TEEEEEECS-S---TTSCEEEEEEECS--SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTE--
T ss_pred EeCCC--------CeEEEEECC-C---CcccceeeeccCC--CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCc--
Confidence 76543 236666664 2 222 2223322 22233 3334556665543 44568888876532
Q ss_pred cceeecccccccccC-CCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 353 GVVHLKELHPHFLPL-PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 353 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
...+.... ..+.+ +..... ..+..+++++..++++-.. -..+..+|+.++...
T Consensus 255 -~~~~~~~~-~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 255 -LSFVKSFG-HGLLIDPRPLFG-ANQMALNKTETKLFISANI---SRELKVFTISGKVVG 308 (331)
T ss_dssp -EEEEEEEE-CCCCCCCGGGTT-CCCEEECTTSSEEEEEETT---TTEEEEEETTSCEEE
T ss_pred -eeeecccc-cccccCCCCccc-ccceEECCCCCEEEEecCC---CCcEEEEEecCCccc
Confidence 00011000 00101 111000 0012346677776554432 347888898776543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-07 Score=98.17 Aligned_cols=246 Identities=13% Similarity=0.056 Sum_probs=135.0
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-cc------ccceeEEecCCCEEEEEEec----CCC---
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AV------RVSNIAWAKDGQALIYVVTD----QNK--- 190 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~------~~~~~~WspDg~~l~y~~~~----~~~--- 190 (726)
..++|||||++|+++....+ .|+++|+++++.+.... .. ....++|+|||+.|++.... ...
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred cceEEcCCCCEEEEEeCCCC----eEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 45689999999877653322 59999999998764322 22 45679999999999887421 011
Q ss_pred CCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE-eeccCCceEEeee
Q 004866 191 RPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL-IWECEGLAHCIVE 269 (726)
Q Consensus 191 ~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~-l~~~~~~~~~~~~ 269 (726)
....|+++++.+++... .+...... ..+.++|||++|++. ...|+++|+.++ +... +..........++
T Consensus 113 ~~~~i~v~d~~~~~~~~-~~~~~~~~--~~~~~s~dg~~l~~~-----~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~s 182 (337)
T 1pby_B 113 QPTRVALYDAETLSRRK-AFEAPRQI--TMLAWARDGSKLYGL-----GRDLHVMDPEAG--TLVEDKPIQSWEAETYAQ 182 (337)
T ss_dssp CCCEEEEEETTTTEEEE-EEECCSSC--CCEEECTTSSCEEEE-----SSSEEEEETTTT--EEEEEECSTTTTTTTBCC
T ss_pred cCceEEEEECCCCcEEE-EEeCCCCc--ceeEECCCCCEEEEe-----CCeEEEEECCCC--cEeeeeeccccCCCceeC
Confidence 23589999997764222 22222222 246799999999887 246999999873 3322 2222111122456
Q ss_pred ecCCEEEEEecCcccC---------------CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEE
Q 004866 270 HHEGFLYLFTDAAKEG---------------QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALI 332 (726)
Q Consensus 270 ~~g~~l~~~t~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~ 332 (726)
++|..+|+.....+.. .....+.|+.+++. . .+...+........+..+.+. ++.+++.
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE-T---GEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT-T---CCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC-C---CCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 7777665443221100 00001256777765 2 222111111112233344443 4566655
Q ss_pred EEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 333 LREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 333 ~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
...|+++|+.+++ .+ ..+..+.....+ .++++++.+++. + ....+..+|+++++..
T Consensus 259 -----~~~v~~~d~~~~~-----~~-----~~~~~~~~~~~~----~~s~dg~~l~~~--~--~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 259 -----YNVLESFDLEKNA-----SI-----KRVPLPHSYYSV----NVSTDGSTVWLG--G--ALGDLAAYDAETLEKK 314 (337)
T ss_dssp -----ESEEEEEETTTTE-----EE-----EEEECSSCCCEE----EECTTSCEEEEE--S--BSSEEEEEETTTCCEE
T ss_pred -----CCeEEEEECCCCc-----Cc-----ceecCCCceeeE----EECCCCCEEEEE--c--CCCcEEEEECcCCcEE
Confidence 2578888876432 11 122222222222 235667766553 2 2578999999888654
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=120.00 Aligned_cols=132 Identities=17% Similarity=0.050 Sum_probs=90.4
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchHHHHHHH-HCCcEEEEEccCCCC-CCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRSELKSLL-DRGWVVAFADVRGGG-GGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~-~~G~~v~~~d~RG~g-~~g~~~~~~~~~~ 548 (726)
+.|...+. |+.|+.. .++.|+||++|||..... ..........|+ +.|++|+.+|||-+. ++...- .....
T Consensus 91 sedcl~ln--v~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 164 (537)
T 1ea5_A 91 SEDCLYLN--IWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEA 164 (537)
T ss_dssp CSCCCEEE--EEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSS
T ss_pred CCcCCeEE--EeccCCC--CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCC--CCCCC
Confidence 67776654 5677653 367899999999743221 111112235666 689999999999431 111100 00111
Q ss_pred CCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCccc
Q 004866 549 KKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLD 609 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d 609 (726)
.+...+.|..++++|+.++- -.||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|...
T Consensus 165 ~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 165 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 23346899999999998762 2599999999999999999988875 2468999999999754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.2e-07 Score=92.12 Aligned_cols=244 Identities=9% Similarity=-0.000 Sum_probs=136.0
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
.++++++++..+ +..++ .|.++|+++|+...... .... .++|+|||+.||++... ...|+++++.++..
T Consensus 4 ~~~~~~~~~~v~-~~~~~---~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~----~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVV-EQHLR---RISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF----CQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEE-EGGGT---EEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST----TCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEE-ecCCC---eEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC----CCeEEEEECCCCce
Confidence 467888876554 43333 59999999998765432 2234 89999999988887542 23899999987753
Q ss_pred -eeEEeeecCCceEEE-EEEcCCCcEEEEEEcCC-CceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCc
Q 004866 206 -DALLLEESNENVYVN-IRHTKDFHFVCVHTFST-TSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 206 -~~lv~~~~d~~~~~~-~~~s~Dg~~l~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~ 282 (726)
...+ ...... .. +.++|||++|+ ..... ....|+++|+.++. ....+..........++++|+.+|+.....
T Consensus 75 ~~~~~-~~~~~~--~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 75 KVVAI-QEGQSS--MADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNK-FISTIPIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp EEEEE-EECSSC--CCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTE-EEEEEECCTTEEEEEECTTSSCEEEEEETT
T ss_pred eEEec-ccCCCC--ccceEECCCCCEEE-EecCCCCcccEEEEECCCCC-eEEEEECCCCccceEECCCCCEEEEEecCC
Confidence 2222 222222 23 68899999998 33222 22389999998732 222333223334456788998877765432
Q ss_pred ccCCCCCC-eEEEEeeCCCCCCCCCc----eEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCCCCCCcce
Q 004866 283 KEGQEADN-HYLLRCPVDASFPSRTW----ESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPLPAGKGVV 355 (726)
Q Consensus 283 ~~~~~~~~-~~l~~~~~~~~~~~~~~----~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~ 355 (726)
+ . ..++.++.+ +.. ..+++. ......+.+. ++++++....+ ..+.++++.++.- ..
T Consensus 150 ~------~~i~~~~~~~~-----g~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~--~~ 212 (331)
T 3u4y_A 150 A------NTVRRFKIDAD-----GVLFDTGQEFISG--GTRPFNITFTPDGNFAFVANLIG--NSIGILETQNPEN--IT 212 (331)
T ss_dssp T------TEEEEEEECTT-----CCEEEEEEEEECS--SSSEEEEEECTTSSEEEEEETTT--TEEEEEECSSTTS--CE
T ss_pred C------ceEEEEEECCC-----CcEeecCCccccC--CCCccceEECCCCCEEEEEeCCC--CeEEEEECCCCcc--cc
Confidence 2 2 445555422 111 122222 2223444444 45676665444 4577788765320 00
Q ss_pred eecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 356 HLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 356 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
.+ ..++...... +..+++++..+.++.. ....++.+|+.+++.+.+.
T Consensus 213 ~~-----~~~~~~~~~~----~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 213 LL-----NAVGTNNLPG----TIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp EE-----EEEECSSCCC----CEEECTTSSEEEEECS---SEEEEEEEETTTTEEEEEE
T ss_pred ee-----eeccCCCCCc----eEEECCCCCEEEEEEc---CCCEEEEEECCCCceeeec
Confidence 01 1222222212 2234567776655432 3456899999998876554
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-09 Score=103.71 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=64.3
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc-CCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK-EIVK 571 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d 571 (726)
+.|.||++||..+.. ..|......|. .+|.|+.+|.||+|.+... ...|+.+.++.+++. +...
T Consensus 12 ~~~~lv~lhg~g~~~--~~~~~~~~~L~-~~~~vi~~Dl~GhG~S~~~------------~~~~~~~~~~~~~~~l~~~~ 76 (242)
T 2k2q_B 12 EKTQLICFPFAGGYS--ASFRPLHAFLQ-GECEMLAAEPPGHGTNQTS------------AIEDLEELTDLYKQELNLRP 76 (242)
T ss_dssp CCCEEESSCCCCHHH--HHHHHHHHHHC-CSCCCEEEECCSSCCSCCC------------TTTHHHHHHHHTTTTCCCCC
T ss_pred CCceEEEECCCCCCH--HHHHHHHHhCC-CCeEEEEEeCCCCCCCCCC------------CcCCHHHHHHHHHHHHHhhc
Confidence 456789999976533 35666666664 5799999999999976321 235666666666543 2222
Q ss_pred CCcEEEEEecccHHHHHHHHHc------CCCce
Q 004866 572 EHKLAGWGYSAGGLLVAAAINC------CPDLF 598 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~------~p~~f 598 (726)
.+++.++||||||.++..++.+ +|+++
T Consensus 77 ~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v 109 (242)
T 2k2q_B 77 DRPFVLFGHSMGGMITFRLAQKLEREGIFPQAV 109 (242)
T ss_dssp CSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSE
T ss_pred CCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEE
Confidence 3689999999999999998875 57753
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=121.67 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=88.7
Q ss_pred EECCCCcEEEEEEEEcCCCC-CCCCccEEEEEcCCCCCC---CCcc----chHHHHHHHH-CCcEEEEEccCCCC-CCCC
Q 004866 470 VPSHDGISVPLTIIYSPKYK-KENQNPGLLHGHGAYGEL---LDKR----WRSELKSLLD-RGWVVAFADVRGGG-GGGK 539 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~-~~~~~P~vl~~hGg~~~~---~~~~----~~~~~~~l~~-~G~~v~~~d~RG~g-~~g~ 539 (726)
+.+.|...+. |+.|.... .+++.|+||++|||.... .... +......|+. .|++|+.+|||-+. ++..
T Consensus 75 ~~sedcl~ln--v~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~ 152 (579)
T 2bce_A 75 YGNEDCLYLN--IWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLS 152 (579)
T ss_dssp ESCSCCCEEE--EEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred CCCCCCCEEE--EEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCc
Confidence 4567776655 56776532 346789999999974321 1111 1112345655 47999999999432 2211
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCcc
Q 004866 540 KWHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFL 608 (726)
Q Consensus 540 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 608 (726)
... ....+...+.|..++++|+.++- -.||+||.|+|+|+||.+++.++.. ...+|+++|+.+|..
T Consensus 153 ~~~---~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~~ 223 (579)
T 2bce_A 153 TGD---SNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp CSS---TTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred CCC---CCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCCc
Confidence 100 01112235899999999998752 2599999999999999999988764 356999999998853
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=112.38 Aligned_cols=105 Identities=16% Similarity=0.022 Sum_probs=76.0
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHHcCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIV 570 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~ 570 (726)
+..|.||++||..+......|......|. .+|.|+.+|+||+|.... ...+++++.+.+. .+.+. .
T Consensus 65 ~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~----------~~~~~~~~a~~~~~~l~~~--~ 131 (300)
T 1kez_A 65 PGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPGYEEGEP----------LPSSMAAVAAVQADAVIRT--Q 131 (300)
T ss_dssp SCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTTSSTTCC----------BCSSHHHHHHHHHHHHHHH--C
T ss_pred CCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCCCCCCCC----------CCCCHHHHHHHHHHHHHHh--c
Confidence 45689999999765432245666666554 569999999999987421 1246777666554 44432 2
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEeCCccc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLD 609 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d 609 (726)
+.+++.++|+|+||.+++.++.++| ++++++|+..+...
T Consensus 132 ~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~ 173 (300)
T 1kez_A 132 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPP 173 (300)
T ss_dssp SSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCT
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCC
Confidence 3478999999999999999999988 48999998887643
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=108.16 Aligned_cols=121 Identities=10% Similarity=0.018 Sum_probs=89.1
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHH------CCcEEEEEccCCCCCCCCcccccccc
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLD------RGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~------~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
||.+|++....++. ...|.||++||.+++. ..|...+..|.+ .||.|+++|+||+|.+...-
T Consensus 93 ~g~~i~~~~~~~~~----~~~~pllllHG~~~s~--~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~~------ 160 (408)
T 3g02_A 93 EGLTIHFAALFSER----EDAVPIALLHGWPGSF--VEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPP------ 160 (408)
T ss_dssp TTEEEEEEEECCSC----TTCEEEEEECCSSCCG--GGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCSC------
T ss_pred CCEEEEEEEecCCC----CCCCeEEEECCCCCcH--HHHHHHHHHHhcccccccCceEEEEECCCCCCCCCCCC------
Confidence 89999876554331 2346799999988754 457888888887 59999999999999764321
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCC-cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEH-KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~-ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.....+++++.+.+..|+++ ..-+ ++.++|+|+||.+++.++.++|++....+...++.
T Consensus 161 ~~~~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~ 220 (408)
T 3g02_A 161 LDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMS 220 (408)
T ss_dssp SSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCC
Confidence 11234678888877777765 2234 89999999999999999999988766666554443
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-09 Score=117.27 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=81.8
Q ss_pred CCccEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRS-ELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
...|+||++||..+.. ...|.. ....|++ .||.|+++|+||+|... +.... ..-....+|+.+.+++|.++.-
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~--~~~~~--~~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQ--YSQAS--QNIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSC--HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCcc--chhhH--hhHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999976543 234655 5677776 79999999999988643 11100 0011234677788888875533
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.+++.++|||+||.+++.++.++|++++++++..|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 567899999999999999999999999999999877754
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.3e-09 Score=118.16 Aligned_cols=118 Identities=16% Similarity=-0.009 Sum_probs=80.0
Q ss_pred CCCccEEEEEcCCCCCCCC-ccchHHHHHHHH-CCcEEEEEccCCC-CCCCC---cccc-cccccCCCCcHHHHHHHHHH
Q 004866 491 ENQNPGLLHGHGAYGELLD-KRWRSELKSLLD-RGWVVAFADVRGG-GGGGK---KWHH-DGRRTKKLNSIKDFISCARF 563 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~d~RG~-g~~g~---~~~~-~~~~~~~~~~~~D~~~~~~~ 563 (726)
+++.|+||++|||...... .........|++ .|++|+.+|||-+ -||.. .+.. ......+...+.|.+++++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 4578999999997432211 111122345665 6999999999931 12211 1100 11112234468999999999
Q ss_pred HHHcC---CCCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCcc
Q 004866 564 LIEKE---IVKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFL 608 (726)
Q Consensus 564 l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~ 608 (726)
+.++- -.||+||.|+|+|+||.+++.++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 99862 24999999999999999998888752 36899999999864
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-09 Score=106.09 Aligned_cols=101 Identities=11% Similarity=-0.021 Sum_probs=70.2
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
+..|.||++||+.+.. ..|..... | ..||.|+.+|+||.+... ....+++++.+.+..+++.-. .
T Consensus 19 ~~~~~lv~lhg~~~~~--~~~~~~~~-l-~~~~~v~~~d~~G~~~~~----------~~~~~~~~~~~~~~~~i~~~~-~ 83 (265)
T 3ils_A 19 VARKTLFMLPDGGGSA--FSYASLPR-L-KSDTAVVGLNCPYARDPE----------NMNCTHGAMIESFCNEIRRRQ-P 83 (265)
T ss_dssp TSSEEEEEECCTTCCG--GGGTTSCC-C-SSSEEEEEEECTTTTCGG----------GCCCCHHHHHHHHHHHHHHHC-S
T ss_pred CCCCEEEEECCCCCCH--HHHHHHHh-c-CCCCEEEEEECCCCCCCC----------CCCCCHHHHHHHHHHHHHHhC-C
Confidence 3457889999986643 34555555 4 789999999999964211 112456666655544443211 2
Q ss_pred CCcEEEEEecccHHHHHHHHH---cCCCceeEEEEeCCc
Q 004866 572 EHKLAGWGYSAGGLLVAAAIN---CCPDLFRAVVLEVPF 607 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~p~ 607 (726)
..++.++|||+||.++..++. .+|++++++|+..+.
T Consensus 84 ~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~ 122 (265)
T 3ils_A 84 RGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAP 122 (265)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 358999999999999999887 678888888877654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-07 Score=92.91 Aligned_cols=203 Identities=12% Similarity=0.128 Sum_probs=107.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC-CCceecccc--cc-----------ccceeEEecCCCEEEEEEecCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-SGALCSKPQ--AV-----------RVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~-tg~~~~~~~--~~-----------~~~~~~WspDg~~l~y~~~~~~ 189 (726)
...++|||||++|+++....+ .+.++++. +|....+.. .. ....++|+|||+ +|.+...
T Consensus 88 p~~~a~spdg~~l~~~~~~~~----~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~-- 160 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYHKG----TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG-- 160 (347)
T ss_dssp CSEEEEETTTTEEEEEETTTT----EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT--
T ss_pred CEEEEECCCCCEEEEEeCCCC----EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC--
Confidence 345689999999877643333 47888884 444332211 10 134589999999 7665322
Q ss_pred CCCceEEEEEcC-CCCce-eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee---ccCC--
Q 004866 190 KRPYQIYCSIIG-STDED-ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW---ECEG-- 262 (726)
Q Consensus 190 ~~~~~l~~~~l~-t~~~~-~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~---~~~~-- 262 (726)
...|+++++. ++... ...+..........+.|+|||++|++.......-.+|.++..+ ++++.+. ....
T Consensus 161 --~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~--g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 161 --SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT--GAFTQLGIVKTIPADY 236 (347)
T ss_dssp --TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEESSCTTC
T ss_pred --CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC--CceEEeeeeeecCCCC
Confidence 2478888887 33211 1111111111223578999999998876655444455555433 3332221 1111
Q ss_pred -----ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE--eecCCCceEEEEe--eeCCEEEEEE
Q 004866 263 -----LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV--FIDDQGLVVEDVD--FCKTHMALIL 333 (726)
Q Consensus 263 -----~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v--~~~~~~~~l~~~~--~~~~~lv~~~ 333 (726)
.....++++|+.||+.....+ ...++.++.. +.++.+ ++. ....+..+. ..+++|++..
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~~~------~v~v~~~~~~-----g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRGYN------TLAVFAVTAD-----GHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEETTT------EEEEEEECGG-----GCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEE
T ss_pred CCCCcceeEEECCCCCEEEEEeCCCC------EEEEEEECCC-----CcEEEeEEEec-CCCCcCeEEECCCCCEEEEEE
Confidence 122457899998877654332 2344444322 122222 121 112223444 4456677766
Q ss_pred EeCCeeEEEEEecCCC
Q 004866 334 REGRTYRLCSVSLPLP 349 (726)
Q Consensus 334 ~~~g~~~l~~~~l~~~ 349 (726)
..++.-.++.++..++
T Consensus 305 ~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 305 QNTDNATLYARDLTSG 320 (347)
T ss_dssp TTTTEEEEEEECTTTC
T ss_pred cCCCcEEEEEEeCCCC
Confidence 6666666666676543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.2e-07 Score=92.98 Aligned_cols=257 Identities=12% Similarity=0.084 Sum_probs=132.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
...++|||||+ |+++. ..+ +...|+++|+++|+...+.. ......++|+|||+.||+.... ...|.+++
T Consensus 42 p~~~a~spdg~-l~~~~-~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~----~~~v~v~~ 114 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVD-KED-DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH----KGTAEVMK 114 (347)
T ss_dssp CCCEEECTTCE-EEEEE-EET-TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT----TTEEEEEE
T ss_pred cceEEEccCCe-EEEEE-ecC-CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC----CCEEEEEE
Confidence 34578999999 54443 322 24579999998887544322 2345678999999999887532 23677777
Q ss_pred cCCCCceeEEeeecC----------CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee---ccC--Cce
Q 004866 200 IGSTDEDALLLEESN----------ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW---ECE--GLA 264 (726)
Q Consensus 200 l~t~~~~~lv~~~~d----------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~---~~~--~~~ 264 (726)
+.....-..+..... ......+.++|||+ +++.... ...|+++++... +.+..+. ... ...
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~--~~~v~~~~~~~~-g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG--SDKVYVYNVSDA-GQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT--TTEEEEEEECTT-SCEEEEEEEECCTTCCEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC--CCEEEEEEECCC-CcEEEeeeEEcCCCCCCc
Confidence 753221111111110 11223578999999 6654433 246777777621 3333222 111 222
Q ss_pred EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE--eecCC-----CceEEEEeee--CCEEEEEEEe
Q 004866 265 HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV--FIDDQ-----GLVVEDVDFC--KTHMALILRE 335 (726)
Q Consensus 265 ~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v--~~~~~-----~~~l~~~~~~--~~~lv~~~~~ 335 (726)
...++++|+.+|+.....+ ...++.++.. .+.+..+ +.... ......+.+. +++|++....
T Consensus 191 ~~~~spdg~~l~v~~~~~~------~v~v~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSS------QIASLKYDTQ----TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp EEEECTTSSEEEEEETTTT------EEEEEEEETT----TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred eEEECCCCCEEEEEeCCCC------EEEEEEecCC----CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 3467899998887655432 2445555432 1222211 11111 1234444444 4567776655
Q ss_pred CCeeEEEEEecCCCCCCcceeecccccccccCCC-ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 336 GRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 336 ~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
++. |.+++++.. +. ...+ ..++... ....+ .++++++.+++.- ....--.+|.+|.++++++.+.
T Consensus 261 ~~~--v~v~~~~~~-g~-~~~~-----~~~~~~~~~~~~~----~~spdg~~l~v~~-~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 261 YNT--LAVFAVTAD-GH-LTLI-----QQISTEGDFPRDF----DLDPTEAFVVVVN-QNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp TTE--EEEEEECGG-GC-EEEE-----EEEECSSSCCCEE----EECTTSSEEEEEE-TTTTEEEEEEECTTTCCEEEEE
T ss_pred CCE--EEEEEECCC-Cc-EEEe-----EEEecCCCCcCeE----EECCCCCEEEEEE-cCCCcEEEEEEeCCCCeEEecc
Confidence 554 445554311 10 0011 1122111 11112 2456777665443 3223345666788889887765
Q ss_pred e
Q 004866 415 Q 415 (726)
Q Consensus 415 ~ 415 (726)
.
T Consensus 327 ~ 327 (347)
T 3hfq_A 327 K 327 (347)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=104.03 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=72.1
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC-
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK- 571 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d- 571 (726)
.|.||++||+.+. ...|......|++ .+|.|+++|+||+|.+... .....+++++.+.+..+++.-..+
T Consensus 38 ~p~lvllHG~~~~--~~~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~-------~~~~~~~~~~a~dl~~~l~~l~~~~ 108 (316)
T 3c5v_A 38 GPVLLLLHGGGHS--ALSWAVFTAAIISRVQCRIVALDLRSHGETKVK-------NPEDLSAETMAKDVGNVVEAMYGDL 108 (316)
T ss_dssp SCEEEEECCTTCC--GGGGHHHHHHHHTTBCCEEEEECCTTSTTCBCS-------CTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCcc--cccHHHHHHHHhhcCCeEEEEecCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHHhccC
Confidence 4789999997553 3467777777776 3899999999999976321 011234555544444444321011
Q ss_pred CCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCc
Q 004866 572 EHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPF 607 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~ 607 (726)
++++.|+||||||.+++.++.+ +|+ ++++|+..+.
T Consensus 109 ~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~ 145 (316)
T 3c5v_A 109 PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV 145 (316)
T ss_dssp CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence 2689999999999999999985 577 8888887653
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-08 Score=99.94 Aligned_cols=119 Identities=15% Similarity=0.083 Sum_probs=81.1
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..+|.++++... +..|.||++||.++.. ..|......| ..||.|+.+|+||+|.+...- .......
T Consensus 11 ~~~~~~~~~~~~--------g~g~~~vllHG~~~~~--~~w~~~~~~l-~~~~~vi~~Dl~G~G~s~~~~---~~~~~~~ 76 (291)
T 3qyj_A 11 DTTEARINLVKA--------GHGAPLLLLHGYPQTH--VMWHKIAPLL-ANNFTVVATDLRGYGDSSRPA---SVPHHIN 76 (291)
T ss_dssp ECSSCEEEEEEE--------CCSSEEEEECCTTCCG--GGGTTTHHHH-TTTSEEEEECCTTSTTSCCCC---CCGGGGG
T ss_pred ecCCeEEEEEEc--------CCCCeEEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEcCCCCCCCCCCC---CCccccc
Confidence 347888875421 2346788999987643 4566666655 568999999999999764321 1000111
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
...+++.+.+..+++.- ..+++.++||||||.++..++.++|++++++|+..+
T Consensus 77 ~~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (291)
T 3qyj_A 77 YSKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129 (291)
T ss_dssp GSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence 34555555444444431 235899999999999999999999999999998754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-06 Score=90.91 Aligned_cols=259 Identities=13% Similarity=0.090 Sum_probs=131.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC--CCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN--SGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~--tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
...++|||||++|+++....+ .|.+++++ +|+...+.. ......++|+|||+.|+++... ...|+++
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~i~~~ 111 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEF----RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVSVT 111 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEEEE
T ss_pred CceEEECCCCCEEEEeecCCC----eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC----CCeEEEE
Confidence 445789999999887753223 46776766 776543321 2356778999999999887532 2367777
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE-----eeccC--CceEEeeeec
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL-----IWECE--GLAHCIVEHH 271 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~-----l~~~~--~~~~~~~~~~ 271 (726)
++..+.....+...........+.|+|||++|++.... ...|+++|+.+. +.+.. +.... ......++++
T Consensus 112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK--QDRICLFTVSDD-GHLVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--GTEEEEEEECTT-SCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred ECCCCccccccccccCCCCceEEEECCCCCEEEEecCC--CCEEEEEEecCC-CceeeecccccccCCCCCcceEEECCC
Confidence 77422211122111111112346799999999876632 246888888652 22322 11111 1123456788
Q ss_pred CCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE--Eee---cC--CCceEEEEeee--CCEEEEEEEeCCeeEEE
Q 004866 272 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES--VFI---DD--QGLVVEDVDFC--KTHMALILREGRTYRLC 342 (726)
Q Consensus 272 g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--v~~---~~--~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 342 (726)
|+.+|+.....+ .+..++++ .. .+.+.. .+. .. ....+..+.+. ++.|++....++ .+.
T Consensus 189 g~~l~~~~~~~~--------~i~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~--~i~ 256 (343)
T 1ri6_A 189 EQYAYCVNELNS--------SVDVWELK-DP-HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS--LIT 256 (343)
T ss_dssp SSEEEEEETTTT--------EEEEEESS-CT-TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--EEE
T ss_pred CCEEEEEeCCCC--------EEEEEEec-CC-CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC--EEE
Confidence 888877754332 24444443 10 122221 111 11 01223344444 456766554444 455
Q ss_pred EEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEee
Q 004866 343 SVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQ 416 (726)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~ 416 (726)
++++....+. ...+ ..++...... +..+++++..+++.. .....-.+|.+|.++++++.+...
T Consensus 257 v~d~~~~~~~-~~~~-----~~~~~~~~~~----~~~~s~dg~~l~~~~-~~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 257 VFSVSEDGSV-LSKE-----GFQPTETQPR----GFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp EEEECTTSCC-EEEE-----EEEECSSSCC----CEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCCCCc-eEEe-----eeecCCCccc----eEEECCCCCEEEEec-CCCCeEEEEEEcCCCceeeEcccc
Confidence 5665421111 0111 1122111111 122355666554433 233334566678888887766543
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.6e-09 Score=107.16 Aligned_cols=122 Identities=10% Similarity=0.040 Sum_probs=87.6
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
.++.++...|+.|++... +..+.||++||..+... ..|. .....|.++||.|+.+|+||+|... ..
T Consensus 11 ~~~~~l~~~i~~p~~~~~-~~~~~VvllHG~~~~~~-~~~~~~l~~~L~~~G~~v~~~d~~g~g~~~-----------~~ 77 (317)
T 1tca_A 11 QPKSVLDAGLTCQGASPS-SVSKPILLVPGTGTTGP-QSFDSNWIPLSTQLGYTPCWISPPPFMLND-----------TQ 77 (317)
T ss_dssp SCHHHHHHTEEETTBCTT-SCSSEEEEECCTTCCHH-HHHTTTHHHHHHTTTCEEEEECCTTTTCSC-----------HH
T ss_pred CCHHHHhheeeCCCCCCC-CCCCeEEEECCCCCCcc-hhhHHHHHHHHHhCCCEEEEECCCCCCCCc-----------HH
Confidence 344455556777776532 33467899999765431 1255 6677888899999999999976321 01
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEeCCccc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLD 609 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d 609 (726)
...+++.+.++++.++. ..+++.++||||||.++..++.++| ++++++|+.+|..+
T Consensus 78 ~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 78 VNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 24577788888887642 2379999999999999998888765 78999999988654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.1e-06 Score=88.01 Aligned_cols=199 Identities=8% Similarity=-0.013 Sum_probs=121.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|+|||+.++-. ...| .|+++|+++++.+.... ......++|+||++.|+++... ...|+++++
T Consensus 171 ~v~~~~~~~~~~~~~s~-~~d~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~ 241 (433)
T 3bws_A 171 FVETISIPEHNELWVSQ-MQAN----AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDR 241 (433)
T ss_dssp EEEEEEEGGGTEEEEEE-GGGT----EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEET
T ss_pred ceeEEEEcCCCEEEEEE-CCCC----EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEEC
Confidence 56677899999876554 3333 59999999987665322 3356778999999998887532 247999998
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC-----CceEEEEEeCCCCCCCeEEeec-cCCceEEeeeecCCE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST-----TSSKVFLINAADPFSGLTLIWE-CEGLAHCIVEHHEGF 274 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~-----~~~~l~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~g~~ 274 (726)
.++.. ...+. .......+.++|||++|++..... ....|+++|+.++ +...... ........++++++.
T Consensus 242 ~~~~~-~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 242 KTKLE-IRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE--KLIDTIGPPGNKRHIVSGNTENK 316 (433)
T ss_dssp TTTEE-EEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT--EEEEEEEEEECEEEEEECSSTTE
T ss_pred CCCcE-EEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC--cEEeeccCCCCcceEEECCCCCE
Confidence 76642 11222 122245688999999998876533 2468999999873 3322221 122223456788888
Q ss_pred EEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCee------------E
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTY------------R 340 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~------------~ 340 (726)
+|+....++ .|..+++. . .+....++.. ..+..+.+. ++.|++....++.. .
T Consensus 317 l~~~~~~~~--------~v~v~d~~-~---~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 317 IYVSDMCCS--------KIEVYDLK-E---KKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp EEEEETTTT--------EEEEEETT-T---TEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred EEEEecCCC--------EEEEEECC-C---CcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence 887765432 35666664 2 2222233332 234455554 45666665544322 7
Q ss_pred EEEEecCCC
Q 004866 341 LCSVSLPLP 349 (726)
Q Consensus 341 l~~~~l~~~ 349 (726)
|+++|+.++
T Consensus 383 v~~~d~~~~ 391 (433)
T 3bws_A 383 VYVIDTTTD 391 (433)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 888987653
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=114.47 Aligned_cols=129 Identities=18% Similarity=0.135 Sum_probs=86.1
Q ss_pred CCCCcEEEEEEEEcCCCC---CCCCccEEEEEcCCCCCC-CCccchHHHHHHHHC-CcEEEEEccCCCC-CCCCcccccc
Q 004866 472 SHDGISVPLTIIYSPKYK---KENQNPGLLHGHGAYGEL-LDKRWRSELKSLLDR-GWVVAFADVRGGG-GGGKKWHHDG 545 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~---~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~-G~~v~~~d~RG~g-~~g~~~~~~~ 545 (726)
+.|...+ .|+.|+... .+++.|+|||+|||.... ....|.. ..|+++ |++|+.+|||-+. ++...- .
T Consensus 108 sEdcL~l--~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~~---~ 180 (574)
T 3bix_A 108 SEDCLYL--NIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLSTG---D 180 (574)
T ss_dssp CSCCCEE--EEEEEC--------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCCS---S
T ss_pred CCcCCEE--EEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcCC---C
Confidence 5666544 467776532 235689999999974322 2222322 456665 7999999999532 111100 0
Q ss_pred cccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEeCCc
Q 004866 546 RRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPF 607 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~ 607 (726)
....+...+.|..++++|+.++- -.||+||.|+|.|+||.+++.++.... .+|+++|+.+|.
T Consensus 181 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 181 QAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 11123356899999999998752 259999999999999999998887543 689999999874
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-07 Score=93.65 Aligned_cols=197 Identities=8% Similarity=0.015 Sum_probs=113.9
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
..++|||||++||.... +....|+|||+.+++.+.... ...+..++|||||+.|+... + ..+.+++..++
T Consensus 137 ~~v~fSpDg~~la~as~---~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~-----~~~~~~~~~~~ 207 (365)
T 4h5i_A 137 KLVYISREGTVAAIASS---KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-G-----SSLEVISTVTG 207 (365)
T ss_dssp EEEEECTTSSCEEEEES---CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-S-----SCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEEEC---CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-c-----eeEEEEEeccC
Confidence 34689999999988752 222369999999998765433 34577899999999887763 2 24666666655
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCCCe---EEeeccCCce-EEeeeecCCEEEEE
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFSGL---TLIWECEGLA-HCIVEHHEGFLYLF 278 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~~~---~~l~~~~~~~-~~~~~~~g~~l~~~ 278 (726)
.................+.|+|||++++..+.... ...++.+++....... ..+......+ ...++|+|+.|+..
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA 287 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence 42111111111223346889999999987776544 3567777776532111 1222233333 23567888877665
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEE
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCS 343 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~ 343 (726)
+... . |..+|+. + ......+ .......+..+.+.. +.++++...++.-+|+-
T Consensus 288 s~D~-------~--V~iwd~~-~--~~~~~~~-~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 288 SNDN-------S--IALVKLK-D--LSMSKIF-KQAHSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp ETTS-------C--EEEEETT-T--TEEEEEE-TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred cCCC-------E--EEEEECC-C--CcEEEEe-cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 5422 2 4444554 1 1111112 122234566666654 45666777777555543
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=102.27 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=79.2
Q ss_pred CccEEEEEcCCCCCCC---CccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 493 QNPGLLHGHGAYGELL---DKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~---~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
+.|.||++||..+... ...|......|.++||.|+.+|+||.|... ...+++.+.++.++++
T Consensus 6 ~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g~g~s~-------------~~~~~~~~~i~~~~~~-- 70 (285)
T 1ex9_A 6 TKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSE-------------VRGEQLLQQVEEIVAL-- 70 (285)
T ss_dssp CSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSCHH-------------HHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCCCCCch-------------hhHHHHHHHHHHHHHH--
Confidence 4578999999766432 235777888999999999999999987531 2456666666666554
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+.+++.++||||||.++..++.++|+.++++|+.++..
T Consensus 71 ~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 244789999999999999999999999999999988753
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=102.15 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=81.6
Q ss_pred CCccEEEEEcCCCCCCCC----ccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc
Q 004866 492 NQNPGLLHGHGAYGELLD----KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK 567 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~----~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 567 (726)
++.|.||++||..+.... ..|......|.++||.|+.+|+||.|..... ....+++.+.++.++++
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~----------~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGP----------NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCCSSST----------TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence 345789999997654311 4577788999999999999999998864211 23567777777766654
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+.+++.++|||+||.++..++.++|++++++|+.++..
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 244799999999999999999999999999999988753
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.9e-09 Score=111.36 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=81.6
Q ss_pred CCccEEEEEcCCCCCCCCccchH-HHHHHHHC-CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRS-ELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
...|+||++||..+.. ...|.. ....|+++ ||.|+++|+||+|.+. +.... ..-....+|+.+.+++|.++.-
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~--~~~~~--~~~~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE--YTQAS--YNTRVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCc--hhHhH--hhHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999976644 234666 45777764 9999999999998653 11100 0001234567777777765434
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.+++.|+|||+||.+++.++.++|++++++|+..|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 567899999999999999999999999999999887754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-06 Score=90.53 Aligned_cols=203 Identities=9% Similarity=0.014 Sum_probs=110.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc---eecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA---LCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~---~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
...++|||||++|+++....+ .|+++|+.+|. ...... ......++|+|||+.||.+... ...|++++
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d 157 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAG----NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK----QDRICLFT 157 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTT----EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG----GTEEEEEE
T ss_pred CcEEEEcCCCCEEEEEecCCC----eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC----CCEEEEEE
Confidence 445689999999877753333 48888884332 222211 2345678999999999776422 23688888
Q ss_pred cCC-CCcee-E--EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeE---EeeccCCc-------eE
Q 004866 200 IGS-TDEDA-L--LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT---LIWECEGL-------AH 265 (726)
Q Consensus 200 l~t-~~~~~-l--v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~---~l~~~~~~-------~~ 265 (726)
+.+ +.... . ............+.|+|||++|++..... ..+.++++....++++ .+.....+ ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~--~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN--SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT--TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC--CEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 876 33211 1 11212222234578999999998776433 4677777743223332 22211111 12
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE--eecCCCceEEEEeee--CCEEEEEEEeCCeeEE
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV--FIDDQGLVVEDVDFC--KTHMALILREGRTYRL 341 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v--~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 341 (726)
..++++|+.||+....++ ...++.++.+ ...++.+ ++.... +..+.+. ++.|++....++.-.+
T Consensus 236 i~~s~dg~~l~v~~~~~~------~i~v~d~~~~----~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTAS------LITVFSVSED----GSVLSKEGFQPTETQ--PRGFNVDHSGKYLIAAGQKSHHISV 303 (343)
T ss_dssp EEECTTSSEEEEEETTTT------EEEEEEECTT----SCCEEEEEEEECSSS--CCCEEECTTSSEEEEECTTTCEEEE
T ss_pred eEECCCCCEEEEEecCCC------EEEEEEEcCC----CCceEEeeeecCCCc--cceEEECCCCCEEEEecCCCCeEEE
Confidence 457788888876553322 2344444321 1223322 222111 3344443 4566666555666666
Q ss_pred EEEecCC
Q 004866 342 CSVSLPL 348 (726)
Q Consensus 342 ~~~~l~~ 348 (726)
+.++..+
T Consensus 304 ~~~d~~~ 310 (343)
T 1ri6_A 304 YEIVGEQ 310 (343)
T ss_dssp EEEETTT
T ss_pred EEEcCCC
Confidence 6666543
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-08 Score=97.96 Aligned_cols=114 Identities=10% Similarity=0.039 Sum_probs=80.9
Q ss_pred EEEEcCCCCCCCCccEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHH
Q 004866 481 TIIYSPKYKKENQNPGLLHGHGAYGELLDKRWR-SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS 559 (726)
Q Consensus 481 ~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~ 559 (726)
.|..|.. .+.+..+.||++||..+.. ...|. .....|.++||.|+.+|++|+|... .....+++.+
T Consensus 53 ~i~~p~~-~~~~~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~-----------~~~~~~~la~ 119 (316)
T 3icv_A 53 GLTCQGA-SPSSVSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPFMLND-----------TQVNTEYMVN 119 (316)
T ss_dssp TEEETTB-BTTBCSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTTTCSC-----------HHHHHHHHHH
T ss_pred hEeCCCC-CCCCCCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCCCCCc-----------HHHHHHHHHH
Confidence 3455533 2333456788899975432 13465 6778899999999999999986421 0124567777
Q ss_pred HHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC---CCceeEEEEeCCccc
Q 004866 560 CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC---PDLFRAVVLEVPFLD 609 (726)
Q Consensus 560 ~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~d 609 (726)
.++.+.++- ..+++.|+||||||.++.+++..+ +++++.+|+.+|...
T Consensus 120 ~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 120 AITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 777777642 337999999999999998877765 589999999988654
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-08 Score=109.29 Aligned_cols=112 Identities=13% Similarity=-0.004 Sum_probs=80.7
Q ss_pred CCccEEEEEcCCCCCCCCccchH-HHHHHHHC-CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRS-ELKSLLDR-GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
...|+||++||..+.. ...|.. ....|+++ ||.|+++|+||+|.+. +.... ..-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~--~~~~~--~~~~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAE--YTQAV--QNIRIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSC--HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccc--cHHHH--HhHHHHHHHHHHHHHHHHHhcC
Confidence 3458999999976543 234665 56777765 9999999999998653 11100 0001234566777777765433
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.+++.|+|||+||.+++.++.++|++++++|+..|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 457899999999999999999999999999999887754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-05 Score=81.92 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=80.1
Q ss_pred eceeeCCCCCEEEEEEeCC-CCcEEEEEEEECCCCceecccc-c-c--ccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDK-DNDYFTLSVRNLNSGALCSKPQ-A-V--RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~-g~e~~~l~v~dl~tg~~~~~~~-~-~--~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
..++|||||++|+++.... +.....+|.++.++|+...+.. . . ....+++ ||+.|+.+... ...|.+++
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~----~~~v~~~~ 126 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYS----GGSITVFP 126 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETT----TTEEEEEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECC----CCEEEEEE
Confidence 4468999999987765421 2234555666766676554432 1 1 2233444 89988776432 24677888
Q ss_pred cCCCC-ce---eEEeeecC--------CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCC----C-eE------E
Q 004866 200 IGSTD-ED---ALLLEESN--------ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS----G-LT------L 256 (726)
Q Consensus 200 l~t~~-~~---~lv~~~~d--------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~----~-~~------~ 256 (726)
+.+.. .. ..+..... ......+.++|||++|++...... .+++++++...+ + +. .
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD--QIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC--EEEEEEEcCCCCcccccceeecccccc
Confidence 76432 11 11111110 111234789999999988765443 455554443222 2 21 1
Q ss_pred ee-c-cCCceEEeeeecCCEEEEEecC
Q 004866 257 IW-E-CEGLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 257 l~-~-~~~~~~~~~~~~g~~l~~~t~~ 281 (726)
+. . ........++++|+.+|+....
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~ 231 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEI 231 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence 11 1 1222345678899888876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-05 Score=82.54 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=74.4
Q ss_pred eCCCCCEEEEEEeCCCCcEE-EEEEEECCCCceeccccccccceeEEecCCCEEEEEEecC-----CCCCceEEEEEcCC
Q 004866 129 VSPDHKFLAYTMYDKDNDYF-TLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQ-----NKRPYQIYCSIIGS 202 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~-~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~-----~~~~~~l~~~~l~t 202 (726)
.+||+++ +|+.+..+.... .|+++|+++++.+.....+....+.+||||++||++.... ..+...|.++|+.+
T Consensus 28 ~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 28 PGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 5689966 687764222111 7999999999876543333334899999999999875311 11234688889877
Q ss_pred CC-ceeEEee-ecC---CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 203 TD-EDALLLE-ESN---ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 203 ~~-~~~lv~~-~~d---~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.+ ...+... ... ...-.++.+||||++|++.... ..+.|+++| +++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t~ 157 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-AGPAVGLVV-QGG 157 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-CCCeEEEEE-CCC
Confidence 65 2222111 000 0111257899999999887543 245789999 774
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.5e-06 Score=88.30 Aligned_cols=203 Identities=9% Similarity=0.020 Sum_probs=119.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCC---CCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNK---RPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~---~~~~l~~~~ 199 (726)
+..++|||||++|+++...+| .|+++|+.+++.+.... ......++|+|||+.|+........ ....|++++
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISE----DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTT----EEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred eeEEEEcCCCCEEEEEecCCC----cEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 455789999999877643334 59999999997765433 3456789999999999887653321 235799999
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEe
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t 279 (726)
+.+++....+ .... ....+.++|||++|++..... ..|+++|+.++. ....+..........++++|+.+++..
T Consensus 290 ~~~~~~~~~~-~~~~--~~~~~~~~~~g~~l~~~~~~~--~~v~v~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 290 MDKEKLIDTI-GPPG--NKRHIVSGNTENKIYVSDMCC--SKIEVYDLKEKK-VQKSIPVFDKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp TTTTEEEEEE-EEEE--CEEEEEECSSTTEEEEEETTT--TEEEEEETTTTE-EEEEEECSSSEEEEEECTTSSEEEEEE
T ss_pred CCCCcEEeec-cCCC--CcceEEECCCCCEEEEEecCC--CEEEEEECCCCc-EEEEecCCCCCCeEEEcCCCCEEEEEe
Confidence 9876422222 1111 224578999999998876543 478889988632 222332222223456778888888776
Q ss_pred cCcccC------CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEE
Q 004866 280 DAAKEG------QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLC 342 (726)
Q Consensus 280 ~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 342 (726)
...... ....+..|+.+++. + .+....+.. ...+..+.+. ++.|++....++.-.++
T Consensus 364 ~~~~~~~~~~~~~g~~dg~v~~~d~~-~---~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 364 RGPNHPTEGYLKKGLVLGKVYVIDTT-T---DTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp CCCCCTTTCTTSCCSSCCEEEEEETT-T---TEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred cCCCccccccccccccceEEEEEECC-C---CcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 532100 00012367777775 2 222333333 2234555554 34555444445544433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.1e-05 Score=78.09 Aligned_cols=199 Identities=8% Similarity=-0.041 Sum_probs=116.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||... .+| .|+++|+.+++.+.... ...+..++|+||++.|+....+ ..|+++++
T Consensus 34 ~v~~~~~s~~~~~l~~~~-~dg----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~ 103 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCS-KDS----SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDV 103 (369)
T ss_dssp CEEEEEECTTSCEEEEEE-SSS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEET
T ss_pred eEEEEEEcCCCCEEEEEe-CCC----EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEC
Confidence 467789999999998874 444 39999999998765432 3466789999999988766432 37889999
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcC--CCceEEEEEeCCCCCCC----------eEEeeccCC--c-eE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFS--TTSSKVFLINAADPFSG----------LTLIWECEG--L-AH 265 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~--~~~~~l~~~d~~~~~~~----------~~~l~~~~~--~-~~ 265 (726)
.+++.. ..+. .......+.|+|++++|+..... .....|.++|+...... ...+..... . ..
T Consensus 104 ~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQCV-ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCEE-EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcEE-EEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 876522 2222 12223568899999999887764 12246777776553211 111111111 1 22
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEE
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSV 344 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~ 344 (726)
..+++++..|+..+.. ..|..+++. .. ......+.. ....+..+.+.. +.++++...+| .|.++
T Consensus 181 ~~~~~~~~~l~~~~~d---------g~i~i~d~~-~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~ 245 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKD---------GKISKYDVS-NN--YEYVDSIDL-HEKSISDMQFSPDLTYFITSSRDT--NSFLV 245 (369)
T ss_dssp EEECGGGCEEEEEETT---------SEEEEEETT-TT--TEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTS--EEEEE
T ss_pred EEEcCCCCEEEEEcCC---------CEEEEEECC-CC--cEeEEEEec-CCCceeEEEECCCCCEEEEecCCc--eEEEE
Confidence 3456777776654432 235556654 21 111222222 233455665543 34445555555 46677
Q ss_pred ecCCC
Q 004866 345 SLPLP 349 (726)
Q Consensus 345 ~l~~~ 349 (726)
|+.++
T Consensus 246 d~~~~ 250 (369)
T 3zwl_B 246 DVSTL 250 (369)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 77643
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-08 Score=96.88 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCCCC-ccchHHHHHHHHC--CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHH-HHHHHHHcCCCC
Q 004866 496 GLLHGHGAYGELLD-KRWRSELKSLLDR--GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS-CARFLIEKEIVK 571 (726)
Q Consensus 496 ~vl~~hGg~~~~~~-~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d 571 (726)
.||++||..+.... ..|......|.++ |+.|+.+|+ |+|.+..... + +. ..+.+.++ .++.+......
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~--~---~~-~~~~~~~~~~~~~l~~~~~l- 78 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVEN--S---FF-LNVNSQVTTVCQILAKDPKL- 78 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHH--H---HH-SCHHHHHHHHHHHHHSCGGG-
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-CCCCcccccc--c---cc-cCHHHHHHHHHHHHHhhhhc-
Confidence 37888996554322 3688888888875 899999997 8875321000 0 00 23333333 34444322111
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCc-eeEEEEeCC
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDL-FRAVVLEVP 606 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~-f~a~v~~~p 606 (726)
.+++.++||||||.++..++.++|+. ++..|+.++
T Consensus 79 ~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 27899999999999999999999984 888887664
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.3e-06 Score=85.25 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=85.3
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-cc--ccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AV--RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~--~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+++++++++.++.. ...+ .|+++|+++++.+.... .. ....++|+|||+.+|++.. ....|+++++.+
T Consensus 4 g~~~~~~~~~~v~~-~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~----~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGHEYMIVT-NYPN----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN----HYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTCEEEEEE-ETTT----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET----TTTEEEEEETTT
T ss_pred cccccCCCEEEEEe-CCCC----eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC----CCCcEEEEeCCC
Confidence 34678887765544 3333 59999999998765432 22 4578999999998887742 234799999987
Q ss_pred CCceeEEeeecCC-----ceEEEEEEcCCCcEEEEEEcC---------CCceEEEEEeCCCCC--CCeEEeeccCCceEE
Q 004866 203 TDEDALLLEESNE-----NVYVNIRHTKDFHFVCVHTFS---------TTSSKVFLINAADPF--SGLTLIWECEGLAHC 266 (726)
Q Consensus 203 ~~~~~lv~~~~d~-----~~~~~~~~s~Dg~~l~~~~~~---------~~~~~l~~~d~~~~~--~~~~~l~~~~~~~~~ 266 (726)
++....+ ..... .....+.+||||++|++.... .....|+++|+.++. ...............
T Consensus 75 ~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (349)
T 1jmx_B 75 CKNTFHA-NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 153 (349)
T ss_dssp TEEEEEE-ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred CcEEEEE-EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Confidence 6522112 11110 001246899999999887743 112579999987632 111222222222223
Q ss_pred eeeecCCEEEEE
Q 004866 267 IVEHHEGFLYLF 278 (726)
Q Consensus 267 ~~~~~g~~l~~~ 278 (726)
.++++|+ +|+.
T Consensus 154 ~~s~dg~-l~~~ 164 (349)
T 1jmx_B 154 RAADDGS-LYVA 164 (349)
T ss_dssp EECTTSC-EEEE
T ss_pred eECCCCc-EEEc
Confidence 4678888 6663
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-07 Score=100.35 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=74.2
Q ss_pred CccEEEEEcCCCCCCCCccc--hHHHHHHHH-CCcEEEEEccCCCCCCCCcccccc---cccCC----CCcHHHHHHHHH
Q 004866 493 QNPGLLHGHGAYGELLDKRW--RSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDG---RRTKK----LNSIKDFISCAR 562 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~--~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~---~~~~~----~~~~~D~~~~~~ 562 (726)
..|+ ++.|||.+... ..+ ......|++ .|+.|+.+|.||+|.+... -... ....+ ...++|+...++
T Consensus 38 g~Pi-~l~~Ggeg~~~-~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p~-~~~~~~~~~~l~~lt~~q~~~Dl~~~~~ 114 (446)
T 3n2z_B 38 GGSI-LFYTGNEGDII-WFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPF-GDNSFKDSRHLNFLTSEQALADFAELIK 114 (446)
T ss_dssp TCEE-EEEECCSSCHH-HHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCTT-GGGGGSCTTTSTTCSHHHHHHHHHHHHH
T ss_pred CCCE-EEEeCCCCcch-hhhhcccHHHHHHHHhCCcEEEEecCCCCCCCCC-CccccccchhhccCCHHHHHHHHHHHHH
Confidence 3575 45588877532 111 123445565 4899999999999987321 1000 01111 234667777777
Q ss_pred HHHHcC-CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 563 FLIEKE-IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 563 ~l~~~~-~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
+|..+- .....++.++||||||.++++++.++|+++.++|+.++.+
T Consensus 115 ~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssapv 161 (446)
T 3n2z_B 115 HLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPI 161 (446)
T ss_dssp HHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccch
Confidence 776541 1233589999999999999999999999999999877543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-05 Score=85.67 Aligned_cols=246 Identities=12% Similarity=0.122 Sum_probs=136.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC--CCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN--SGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~--tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++|+++...+| .|.+||+. +++.+.... ...+..++|+|||+.|+.... ...|+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----~g~v~ 174 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDK----SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-----FGDVY 174 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGT----EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCC----eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-----CCcEE
Confidence 4677899999999866655555 48999998 776654321 245678999999998887642 34789
Q ss_pred EEEcCCCCcee---EEeeecCCceEEEEEEcCC---CcEEEEEEcCCCceEEEEEeCCCCCCCeEEee-ccCCce-EEee
Q 004866 197 CSIIGSTDEDA---LLLEESNENVYVNIRHTKD---FHFVCVHTFSTTSSKVFLINAADPFSGLTLIW-ECEGLA-HCIV 268 (726)
Q Consensus 197 ~~~l~t~~~~~---lv~~~~d~~~~~~~~~s~D---g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~-~~~~ 268 (726)
.+++.++.... ..+..... ....+.|+|| +++|+..+.+ ..|+++|+.++. ....+. .....+ ...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~d---~~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGHVS-MLTDVHLIKDSDGHQFIITSDRD---EHIKISHYPQCF-IVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp EEETTSCCCSSCCCCCSEECSS-CEEEEEEEECTTSCEEEEEEETT---SCEEEEEESCTT-CEEEECCCCSSCEEEEEE
T ss_pred EEecCCcccccccceeeecccC-ceEEEEEcCCCCCCcEEEEEcCC---CcEEEEECCCCc-eeeeeecCCCCceEEEEE
Confidence 99987664211 11111122 2346789999 8888765543 357788887642 222222 222222 2345
Q ss_pred eecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec------------------------CCCceEEEEee
Q 004866 269 EHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID------------------------DQGLVVEDVDF 324 (726)
Q Consensus 269 ~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~------------------------~~~~~l~~~~~ 324 (726)
+ +++.|+..+. + ..|..+++. . .+....+.. .....+..+.+
T Consensus 250 s-d~~~l~s~~~-d--------~~v~vwd~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 250 G-KDYLLLSAGG-D--------DKIFAWDWK-T---GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp C-STTEEEEEES-S--------SEEEEEETT-T---CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred C-CCCEEEEEeC-C--------CeEEEEECC-C---CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 5 6776665442 2 224444443 1 111111110 11234555555
Q ss_pred e--CCEEEEEEEeCCeeEEEEEec--CCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCc--
Q 004866 325 C--KTHMALILREGRTYRLCSVSL--PLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPD-- 398 (726)
Q Consensus 325 ~--~~~lv~~~~~~g~~~l~~~~l--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~-- 398 (726)
. ++.|++....++. |.++++ ..+. + +. ....+..+..+..+. +.+ +.++++..+...|.
T Consensus 316 ~~~~~~l~~~~~~d~~--i~iw~~~~~~~~-~----l~--~~~~~~~~~~v~~~~----~~~--~~~~v~~~~~~~~~~~ 380 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKC--IIILEMSEKQKG-D----LA--LKQIITFPYNVISLS----AHN--DEFQVTLDNKESSGVQ 380 (450)
T ss_dssp CSSSSEEEEEETTCSE--EEEEEECSSSTT-C----EE--EEEEEECSSCEEEEE----EET--TEEEEEECCTTCCSSC
T ss_pred eCCCCEEEEEECCCCe--EEEEEeccCCCC-c----ee--eccEeccCCceEEEE----ecC--CcEEEEEecccCCCCC
Confidence 5 3455544435554 555555 2210 0 11 011233333333332 222 45778888888886
Q ss_pred ----eEEEEECCCCeEE
Q 004866 399 ----AVVDYDLSYGKWN 411 (726)
Q Consensus 399 ----~~~~~d~~~~~~~ 411 (726)
++|.++..+++++
T Consensus 381 ~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 381 KNFAKFIEYNLNENSFV 397 (450)
T ss_dssp CCSEEEEEEETTTTEEE
T ss_pred CcceEEEEEEcCCCeEE
Confidence 9999999888764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-05 Score=82.32 Aligned_cols=150 Identities=9% Similarity=0.048 Sum_probs=95.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..++|||||++|+... .+| .|+++|+.+++.+.... ...+..+.|+||++.|+....+.......|.++++.
T Consensus 76 ~v~~~~~~~~~~~l~s~~-~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGS-ADY----SIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CEEEEEECTTSSEEEEEE-TTT----EEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEe-CCC----eEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 466788999999998764 444 59999999998765433 446678999999999988754422233467777765
Q ss_pred CCC-ceeEEe----------eecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeee
Q 004866 202 STD-EDALLL----------EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVE 269 (726)
Q Consensus 202 t~~-~~~lv~----------~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~ 269 (726)
+.. ...+.. ..........+.|+||+++|+..... ..|+++|+.+.......+......+ ...++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD---GKISKYDVSNNYEYVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---SEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---CEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence 443 111111 11111134567899999998876553 4688999976333333343333332 34566
Q ss_pred ecCCEEEEEec
Q 004866 270 HHEGFLYLFTD 280 (726)
Q Consensus 270 ~~g~~l~~~t~ 280 (726)
+++..|+..+.
T Consensus 228 ~~~~~l~~~~~ 238 (369)
T 3zwl_B 228 PDLTYFITSSR 238 (369)
T ss_dssp TTSSEEEEEET
T ss_pred CCCCEEEEecC
Confidence 78887766544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-05 Score=78.24 Aligned_cols=238 Identities=9% Similarity=-0.017 Sum_probs=132.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc-------cccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-------QAVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-------~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.+..++|||||++|+.+. +| .|.++|+.+++..... ....+..+.|+||++.|+....+ ..|
T Consensus 53 ~v~~~~~~~~~~~l~~~~--dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i 121 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG--KG----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STL 121 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--BS----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEE
T ss_pred ceEEEEEecCCcEEEEcC--CC----eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcE
Confidence 466778999999998874 33 5999999987533221 12356789999999988876432 378
Q ss_pred EEEEcCCCCc-eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCC
Q 004866 196 YCSIIGSTDE-DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEG 273 (726)
Q Consensus 196 ~~~~l~t~~~-~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~ 273 (726)
+++++.++.. ....+.... .....+.|+||+++|+..... ..|+++|+.++. ....+....... ...+++++.
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSD---GNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS
T ss_pred EEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCc-eeeeeecccCceEEEEECCCCC
Confidence 8889887652 222222222 223467899999998876654 358889987732 222332222222 235667787
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCCCCCC
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPLPAGK 352 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~~~~ 352 (726)
.|+..+.. ..|..+++. . ......+.. ...+..+.+.. +.++++...+| .++++++..+.
T Consensus 197 ~l~~~~~d---------g~i~~~d~~-~---~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~--~i~~~~~~~~~-- 257 (337)
T 1gxr_A 197 KLWTGGLD---------NTVRSWDLR-E---GRQLQQHDF--TSQIFSLGYCPTGEWLAVGMESS--NVEVLHVNKPD-- 257 (337)
T ss_dssp EEEEEETT---------SEEEEEETT-T---TEEEEEEEC--SSCEEEEEECTTSSEEEEEETTS--CEEEEETTSSC--
T ss_pred EEEEEecC---------CcEEEEECC-C---CceEeeecC--CCceEEEEECCCCCEEEEEcCCC--cEEEEECCCCC--
Confidence 77765532 235556654 2 111112222 23345555443 33444445555 46667765432
Q ss_pred cceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 353 GVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 353 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
...+ ......+..+ .+++++..++. .+. -..+..+|+.+++..
T Consensus 258 -~~~~-------~~~~~~v~~~----~~~~~~~~l~~-~~~---dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 258 -KYQL-------HLHESCVLSL----KFAYCGKWFVS-TGK---DNLLNAWRTPYGASI 300 (337)
T ss_dssp -EEEE-------CCCSSCEEEE----EECTTSSEEEE-EET---TSEEEEEETTTCCEE
T ss_pred -eEEE-------cCCccceeEE----EECCCCCEEEE-ecC---CCcEEEEECCCCeEE
Confidence 0000 1111222222 23455665433 322 357889999887654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.4e-06 Score=86.86 Aligned_cols=196 Identities=9% Similarity=-0.041 Sum_probs=114.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||-.. .+| .|++||+.+++.+.... ...+..+.|+||++.++.+...+ ..|.++|+
T Consensus 129 ~V~~v~~spdg~~l~sgs-~d~----~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D----~~v~iwd~ 199 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGS-KDI----CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED----NRILLWDT 199 (344)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT----SCEEEEET
T ss_pred CEEEEEECCCCCEEEEEe-CCC----eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccc----cccccccc
Confidence 366788999999998764 444 39999999998765432 34567899999998877765432 36888899
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t 279 (726)
.+++....+...........+.++|++..+++.... ...|.++|+.++. ....+......+ ...++++|..+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~--dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE--NGTVSLVDTKSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEET--TSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEecc--CCcEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 877532222111122223467889876554444332 2358888988743 334444333333 234667887655544
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEee--eCCEEEEEEEeCCeeEEEEE
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF--CKTHMALILREGRTYRLCSV 344 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~ 344 (726)
..++ . |...|+. . .+...+ ......+..+.+ .++.++++...+|.-.++.+
T Consensus 277 s~D~------~--i~vwd~~-~---~~~~~~--~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 277 SEDC------S--LAVLDSS-L---SELFRS--QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ETTS------C--EEEECTT-C---CEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred eCCC------e--EEEEECC-C---CcEEEE--cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 4332 2 4444554 1 222222 222334556555 45678888888876555443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.1e-06 Score=86.93 Aligned_cols=249 Identities=11% Similarity=0.008 Sum_probs=125.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCC-cEEEEEEEECCCCceecccc------ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDN-DYFTLSVRNLNSGALCSKPQ------AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~-e~~~l~v~dl~tg~~~~~~~------~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.+..++|||||++||-..+.... ....|++++..+++...... ...+..++|+||++.| ....+ ..|
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d-----g~v 117 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS-----GAV 117 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT-----SCE
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC-----CEE
Confidence 57888999999999887643221 12468999998886543211 2346789999998644 33322 257
Q ss_pred EEEEcCCCC-ceeEEeee-cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecC
Q 004866 196 YCSIIGSTD-EDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHE 272 (726)
Q Consensus 196 ~~~~l~t~~-~~~lv~~~-~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g 272 (726)
.++++.+++ .....+.. ........+.|+|||++|+..+.++ .|.++|+.++. ....+......+. ..+++++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg---~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF---SVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGK 193 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTTE-EEEEECCCSSCEEEEEECTTC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCc-EEEEEcCCCCCEEEEEEccCC
Confidence 777776654 11111111 1112234688999999987655433 47888987732 1222322223222 2345666
Q ss_pred CEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCCCC
Q 004866 273 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPLPA 350 (726)
Q Consensus 273 ~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~~ 350 (726)
+.+++....++ .|...|+. ..... ..+........+..+.+. ++.++++...++. |+++|+.++.
T Consensus 194 ~~~~~s~~~dg--------~v~~wd~~-~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~--i~~wd~~~~~ 260 (357)
T 4g56_B 194 DTIFLSCGEDG--------RILLWDTR-KPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGN--VSLVNIKNPD 260 (357)
T ss_dssp SSCEEEEETTS--------CEEECCTT-SSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC--EEEEESSCGG
T ss_pred CceeeeeccCC--------ceEEEECC-CCcee--eeeeeccccccccchhhhhcccceEEEeecccc--eeEEECCCCc
Confidence 65555444332 24455554 21111 111112223344555543 4567777666664 5556765421
Q ss_pred CCcceeecccccccccCC-CceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 351 GKGVVHLKELHPHFLPLP-KYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 351 ~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
.+ ..+... ..+..+ .+++++..++++.+.- ..|..+|+.+++..
T Consensus 261 -----~~-----~~~~~~~~~v~~l----~~sp~~~~~lasgs~D---~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 261 -----SA-----QTSAVHSQNITGL----AYSYHSSPFLASISED---CTVAVLDADFSEVF 305 (357)
T ss_dssp -----GC-----EEECCCSSCEEEE----EECSSSSCCEEEEETT---SCEEEECTTSCEEE
T ss_pred -----Ee-----EEEeccceeEEEE----EEcCCCCCEEEEEeCC---CEEEEEECCCCcEe
Confidence 01 112211 122322 2345565555554432 36888898887654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-05 Score=86.97 Aligned_cols=264 Identities=13% Similarity=0.104 Sum_probs=143.3
Q ss_pred eeceeeCC----CCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc-------------cccceeEEecCCCEEEEEEe
Q 004866 124 EELSEVSP----DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-------------VRVSNIAWAKDGQALIYVVT 186 (726)
Q Consensus 124 ~~~~~~SP----DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-------------~~~~~~~WspDg~~l~y~~~ 186 (726)
...+++|| ||++|+.+....+ +|.|+|..+++.+..... .....+.+|||++.++++..
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~----~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPP----QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESS----EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cceEEeCCCcCCCCCEEEEEEccCC----eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 34568999 9999876643333 488999999987653221 13457899999998877642
Q ss_pred cCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-cC----
Q 004866 187 DQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-CE---- 261 (726)
Q Consensus 187 ~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~~---- 261 (726)
....|+.+++.+...-. +.......+..++.|+|||+++++.... .+.|.++|+.++ +.....+ ..
T Consensus 300 ----~~g~i~vvd~~~~~~l~-~~~i~~~~~~~~~~~spdg~~l~va~~~--~~~v~v~D~~tg--~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 300 ----ETGKVLLVNYKDIDNLT-VTSIGAAPFLHDGGWDSSHRYFMTAANN--SNKVAVIDSKDR--RLSALVDVGKTPHP 370 (543)
T ss_dssp ----TTTEEEEEECTTSSSCE-EEEEECCSSCCCEEECTTSCEEEEEEGG--GTEEEEEETTTT--EEEEEEECSSSBCC
T ss_pred ----CCCeEEEEEecCCCcce-eEEeccCcCccCceECCCCCEEEEEecC--CCeEEEEECCCC--eEEEeeccCCCCCC
Confidence 23589999987754211 1111122233357899999998776643 346888999874 3322222 11
Q ss_pred CceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCC-CCCCCCceEE--eec-CCCceEEEEeeeCCEEEEEEEeCC
Q 004866 262 GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDA-SFPSRTWESV--FID-DQGLVVEDVDFCKTHMALILREGR 337 (726)
Q Consensus 262 ~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~v--~~~-~~~~~l~~~~~~~~~lv~~~~~~g 337 (726)
......++++++.+|+..+... -.|..++.+. ......|+.+ ++. ......-.+++.+++|++...-+.
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~d-------~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLGD-------GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSSS-------SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS
T ss_pred CCCcccCCCCCccEEEeccCCC-------ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC
Confidence 1111223566677665544322 1244455440 1011225532 222 112111234555677776542221
Q ss_pred ----eeEEEEEecCCCCCCcceeeccccccc-ccCCCceeeeecCCCCcCCCcEEEEEEcc-CCCCceEEEEECCCCeEE
Q 004866 338 ----TYRLCSVSLPLPAGKGVVHLKELHPHF-LPLPKYVSQIVPGPNYDYYSSTMRFAISS-PVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 338 ----~~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~ss-~~~P~~~~~~d~~~~~~~ 411 (726)
...|.++|+.+.+.. ...+.... -.+++....+ ....++.+++.+.++..+ -.....|..+|.+++++.
T Consensus 444 ~~~~~~~v~v~d~~~~~~~----~~~~~v~~~~~~~~~~~~~-~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAK----YQVLPIAEWADLGEGAKRV-VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp SHHHHTCEEEEETTCTTSC----CEEECHHHHHCCCSSCCEE-EEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CcccCceEEEEECCCCCCC----eEEeechhhcccCCCCCce-EeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 347888998765310 00000000 0122211111 123457788888876633 346789999999998764
Q ss_pred E
Q 004866 412 I 412 (726)
Q Consensus 412 ~ 412 (726)
.
T Consensus 519 ~ 519 (543)
T 1nir_A 519 A 519 (543)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.53 E-value=8.2e-06 Score=85.82 Aligned_cols=158 Identities=11% Similarity=0.114 Sum_probs=88.4
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECC--CC----c-eec--------cccccccceeEEecCCCEEEEEEecCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN--SG----A-LCS--------KPQAVRVSNIAWAKDGQALIYVVTDQNK 190 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~--tg----~-~~~--------~~~~~~~~~~~WspDg~~l~y~~~~~~~ 190 (726)
.+.|||||++|+++ +. ++. .|++++++ ++ + ... .........++|+|||+.||++...
T Consensus 159 ~~~~spdg~~l~~~-~~-~~~--~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--- 231 (361)
T 3scy_A 159 CVRITPDGKYLLAD-DL-GTD--QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI--- 231 (361)
T ss_dssp EEEECTTSSEEEEE-ET-TTT--EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT---
T ss_pred EEEECCCCCEEEEE-eC-CCC--EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC---
Confidence 37899999998776 33 332 35666555 43 2 111 1112234578999999988877422
Q ss_pred CCceEEEEEcCCCCceeE-Eee-ecC-CceEEEEEEcCCCcEEEEEEcC-CCceEEEEEeCCCCCCCeEEee---ccCCc
Q 004866 191 RPYQIYCSIIGSTDEDAL-LLE-ESN-ENVYVNIRHTKDFHFVCVHTFS-TTSSKVFLINAADPFSGLTLIW---ECEGL 263 (726)
Q Consensus 191 ~~~~l~~~~l~t~~~~~l-v~~-~~d-~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~l~---~~~~~ 263 (726)
...|+++++.++....+ ... ... ......+.|||||++|++.... ...-.+|.++..+ +.++.+. .....
T Consensus 232 -~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~--g~~~~~~~~~~g~~~ 308 (361)
T 3scy_A 232 -GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN--GTLTKVGYQLTGIHP 308 (361)
T ss_dssp -TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT--CCEEEEEEEECSSCC
T ss_pred -CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC--CcEEEeeEecCCCCC
Confidence 23677777765431111 111 111 1112467899999998776654 3334455555444 3333322 21122
Q ss_pred eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 264 AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 264 ~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
....++++|+.||+.....+ ...++.++..
T Consensus 309 ~~~~~spdg~~l~~~~~~~~------~v~v~~~d~~ 338 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDTN------VIQIFERDQA 338 (361)
T ss_dssp CEEEECTTSCEEEEEETTTT------EEEEEEECTT
T ss_pred ceEEECCCCCEEEEEECCCC------CEEEEEEECC
Confidence 34567889998877654332 3667777764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.8e-06 Score=85.50 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=72.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc--------ccceeEEecCCCEEEEEEecC-------C
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV--------RVSNIAWAKDGQALIYVVTDQ-------N 189 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~--------~~~~~~WspDg~~l~y~~~~~-------~ 189 (726)
..++|||||++++++....+ .|+++|+++++.+...... ....++|+|||+.|++...+. .
T Consensus 46 ~~~~~s~dg~~~~v~~~~~~----~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNHYG----DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp CEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ceeEECCCCCEEEEEeCCCC----cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 45679999998776643222 5999999999765432211 146789999999999886430 0
Q ss_pred CCCceEEEEEcCCCC--ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 190 KRPYQIYCSIIGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 190 ~~~~~l~~~~l~t~~--~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.....|+++++.+++ .....+..+.. ...+.++|||+ |++.. .+|+++|+.++
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~-l~~~~-----~~i~~~d~~~~ 176 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFPMPRQ--VYLMRAADDGS-LYVAG-----PDIYKMDVKTG 176 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCSS--CCCEEECTTSC-EEEES-----SSEEEECTTTC
T ss_pred cCCCeEEEEECCCccccceeeeccCCCc--ccceeECCCCc-EEEcc-----CcEEEEeCCCC
Confidence 012479999997743 11122222221 23467999999 66532 23888888763
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=98.42 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCCC--------CCccc----hHHHHHHHHCCcE---EEEEccCCCCCCCCcccccccccCCCCcHHHHHH
Q 004866 495 PGLLHGHGAYGEL--------LDKRW----RSELKSLLDRGWV---VAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFIS 559 (726)
Q Consensus 495 P~vl~~hGg~~~~--------~~~~~----~~~~~~l~~~G~~---v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~ 559 (726)
+.||++||..+.. ....| ......|.++||. |+.+|+||+|...... .........+++.+
T Consensus 41 ~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~~----~~~~~~~~~~~l~~ 116 (342)
T 2x5x_A 41 TPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSAQ----YNYHSSTKYAIIKT 116 (342)
T ss_dssp CCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHHHHTCGG----GCCBCHHHHHHHHH
T ss_pred CeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCCccCCcc----ccCCHHHHHHHHHH
Confidence 4488899965532 12356 6778889999998 9999999987532110 00112235778888
Q ss_pred HHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCccc
Q 004866 560 CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFLD 609 (726)
Q Consensus 560 ~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d 609 (726)
.++.++++- ..+++.|+||||||.++..++.++ |++++++|+.+|...
T Consensus 117 ~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 117 FIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred HHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 888887642 337899999999999999999988 899999999887654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00027 Score=74.25 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=128.3
Q ss_pred eeeCCCCCEEEEEEe-----CCCCcEEEEEEEECCCCceecccc-c--------cccceeEEecCCCEEEEEEecCCCCC
Q 004866 127 SEVSPDHKFLAYTMY-----DKDNDYFTLSVRNLNSGALCSKPQ-A--------VRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 127 ~~~SPDG~~la~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~-~--------~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
+.+||||++|..+.. ..|.....|.++|+++++.+.... . .....+.++|||++||.+... ..
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---~~ 159 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---PA 159 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---SS
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---CC
Confidence 689999999755431 122234569999999998765322 1 134568999999999887422 13
Q ss_pred ceEEEEEcCCCC-ceeEE-------eeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce
Q 004866 193 YQIYCSIIGSTD-EDALL-------LEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA 264 (726)
Q Consensus 193 ~~l~~~~l~t~~-~~~lv-------~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 264 (726)
..|..+|+.+.+ ...+- +......| +..++||+.+++.......- +-.. + . .+.......
T Consensus 160 ~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~---~~~~~DG~~~~v~~~~~g~v-~~~~---~---~--~~~~~~~~~ 227 (386)
T 3sjl_D 160 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF---FMHCRDGSLAKVAFGTEGTP-EITH---T---E--VFHPEDEFL 227 (386)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEEEEEEETTEE---EEEETTSCEEEEECCSSSCC-EEEE---C---C--CCSCTTSCB
T ss_pred CeEEEEECCCCcEEEEEECCCcceeecCCCcee---EEECCCCCEEEEECCCCCeE-EEee---c---c--eeccccccc
Confidence 478899998875 22221 11111112 25688999887765442221 1100 1 0 000000000
Q ss_pred --EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCC---CCCceE---------EeecCCCceEEEEeeeCCEEE
Q 004866 265 --HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFP---SRTWES---------VFIDDQGLVVEDVDFCKTHMA 330 (726)
Q Consensus 265 --~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~---------v~~~~~~~~l~~~~~~~~~lv 330 (726)
...+...+++++|.+..+ .++.+|+. ... ...|.. ..+. +.....++..++++|
T Consensus 228 ~~~~~~~~~dG~~~~vs~~g---------~V~v~d~~-~~~~~v~~~~~~~~~~~~~~g~~p~--g~q~~a~~~~~~~ly 295 (386)
T 3sjl_D 228 INHPAYSQKAGRLVWPTYTG---------KIHQIDLS-SGDAKFLPAVEALTEAERADGWRPG--GWQQVAYHRALDRIY 295 (386)
T ss_dssp CSCCEEETTTTEEEEEBTTS---------EEEEEECT-TSSCEECCCEESSCHHHHHTTEEEC--SSSCEEEETTTTEEE
T ss_pred cccceeEcCCCcEEEEeCCC---------EEEEEECC-CCcceeecceeccccccccccccCC--CcceeeECCCCCeEE
Confidence 012222244666666521 36677764 211 112210 0011 112234455578999
Q ss_pred EEEEeC-------CeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEE
Q 004866 331 LILREG-------RTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDY 403 (726)
Q Consensus 331 ~~~~~~-------g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~ 403 (726)
+....+ ...+++++|+.+.+ . ...++++....++. .+.|+...+|+.. ..-..+..+
T Consensus 296 V~~~~~~~~~hk~~~~~V~viD~~t~k-----v-----~~~i~vg~~~~~la----vs~D~~~~ly~tn--~~~~~VsVi 359 (386)
T 3sjl_D 296 LLVDQRDEWRHKTASRFVVVLDAKTGE-----R-----LAKFEMGHEIDSIN----VSQDEKPLLYALS--TGDKTLYIH 359 (386)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCC-----E-----EEEEEEEEEECEEE----ECSSSSCEEEEEE--TTTTEEEEE
T ss_pred EEeccccccccCCCCCEEEEEECCCCe-----E-----EEEEECCCCcceEE----ECCCCCeEEEEEc--CCCCeEEEE
Confidence 887643 24689999987653 1 12344444333333 3567664444433 234588999
Q ss_pred ECCCCeEE
Q 004866 404 DLSYGKWN 411 (726)
Q Consensus 404 d~~~~~~~ 411 (726)
|..+++..
T Consensus 360 D~~t~k~~ 367 (386)
T 3sjl_D 360 DAESGEEL 367 (386)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99988753
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=9.3e-06 Score=83.88 Aligned_cols=125 Identities=12% Similarity=-0.018 Sum_probs=79.3
Q ss_pred EEEEEECCCCceecccc-cc---ccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc-eeEEeeecC--CceEEEE
Q 004866 149 TLSVRNLNSGALCSKPQ-AV---RVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE-DALLLEESN--ENVYVNI 221 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~-~~---~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~-~~lv~~~~d--~~~~~~~ 221 (726)
.|+++|+++++.+.... .. ....++|+|||+.||++... ...|+++++.+++. ..+...... ......+
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC----CCeEEEEECCCCCeEeeEEcCCcccccccccce
Confidence 59999999998765433 33 36789999999999887532 34799999987752 222221100 0011246
Q ss_pred EEcCCCcEEEEEEcC-----C----CceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEE
Q 004866 222 RHTKDFHFVCVHTFS-----T----TSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLF 278 (726)
Q Consensus 222 ~~s~Dg~~l~~~~~~-----~----~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~ 278 (726)
.++|||++|++.... . ....|+++|+.++. ....+..........++++|+.+|+.
T Consensus 88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred EECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeCCCCcceeEECCCCCEEEEe
Confidence 899999999887521 1 24689999997732 12233322222345578889888776
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-05 Score=84.63 Aligned_cols=116 Identities=6% Similarity=0.045 Sum_probs=69.0
Q ss_pred ceeeCCCCCE-EEEEEe-------------CCCCcEEEEEEEECC-CCceecc-c-----cccccceeEEecCCCEEEEE
Q 004866 126 LSEVSPDHKF-LAYTMY-------------DKDNDYFTLSVRNLN-SGALCSK-P-----QAVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 126 ~~~~SPDG~~-la~~~~-------------~~g~e~~~l~v~dl~-tg~~~~~-~-----~~~~~~~~~WspDg~~l~y~ 184 (726)
.+.|||||++ ++|+.+ ..| .+.+++++ +|+.... . .......++|+|||+.||.+
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g----~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG----YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC----EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCc----eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 4679999997 455543 222 47788876 4654321 1 12245678999999988765
Q ss_pred EecCCCCCceEEEEEcC-CCCceeE-EeeecC-CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 185 VTDQNKRPYQIYCSIIG-STDEDAL-LLEESN-ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 185 ~~~~~~~~~~l~~~~l~-t~~~~~l-v~~~~d-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.. ....|+++++. +++...+ ....+. ......+.+||||++|++.......-.+|.++..+
T Consensus 163 ~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 163 DL----TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp ET----TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred cC----CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence 32 12478889987 5542111 111111 22234578999999998776544444556566544
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-07 Score=101.03 Aligned_cols=112 Identities=11% Similarity=-0.002 Sum_probs=76.8
Q ss_pred CCccEEEEEcCCCCCCCCccchH-HHHHHH-HCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRS-ELKSLL-DRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~-~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
...|+||++||..+.. ...|.. ....|+ ..+|.|+++|+||+|... +..+. ..-....+|+.+.+++|.++..
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTA--YSQAS--QNVRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCc--cHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999965432 234655 445554 579999999999987642 11100 0000122455566666654333
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.+++.|+|||+||.+++.++.++|++++.+++..|..
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 467899999999999999999999999999999877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-05 Score=90.81 Aligned_cols=142 Identities=10% Similarity=-0.004 Sum_probs=91.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||.+. .+| .|.|||+.+|+...... ...+..+.|+|||+.|+.... ...|.++++
T Consensus 15 ~v~~i~~sp~~~~la~~~-~~g----~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~ 84 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTL-YSG----RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-----DFRIRVFNY 84 (814)
T ss_dssp CEEEEEECSSSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TSEEEEEET
T ss_pred ceEEEEECCCCCEEEEEe-CCC----EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-----CCeEEEEEC
Confidence 467789999999999885 344 49999999987654322 446778999999999888743 247888998
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeee-cCCEEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEH-HEGFLYLF 278 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~-~g~~l~~~ 278 (726)
.++..- ..+... ......+.|+|||++|+..+.+ ..|.++|+.++......+......+ ...+++ ++..|+..
T Consensus 85 ~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 85 NTGEKV-VDFEAH-PDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp TTCCEE-EEEECC-SSCEEEEEECSSSSEEEEEETT---SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCcEE-EEEecC-CCCEEEEEEeCCCCEEEEEcCC---CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 876522 222222 2234568999999998865543 3577888876322223333333322 234566 45444444
Q ss_pred e
Q 004866 279 T 279 (726)
Q Consensus 279 t 279 (726)
+
T Consensus 160 ~ 160 (814)
T 3mkq_A 160 C 160 (814)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.46 E-value=8.1e-07 Score=78.76 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=65.2
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
..+|.++.... . ++.|.||++| +.. ..|... | .++|.|+.+|+||+|.+.... .
T Consensus 8 ~~~g~~~~~~~---~-----g~~~~vv~~H-~~~----~~~~~~---l-~~~~~v~~~d~~G~G~s~~~~------~--- 61 (131)
T 2dst_A 8 HLYGLNLVFDR---V-----GKGPPVLLVA-EEA----SRWPEA---L-PEGYAFYLLDLPGYGRTEGPR------M--- 61 (131)
T ss_dssp EETTEEEEEEE---E-----CCSSEEEEES-SSG----GGCCSC---C-CTTSEEEEECCTTSTTCCCCC------C---
T ss_pred EECCEEEEEEE---c-----CCCCeEEEEc-CCH----HHHHHH---H-hCCcEEEEECCCCCCCCCCCC------C---
Confidence 34777765432 1 1246789999 222 123332 3 456999999999998753221 0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDL 597 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~ 597 (726)
. ++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|.+
T Consensus 62 ~-~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~l 104 (131)
T 2dst_A 62 A-PEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLRA 104 (131)
T ss_dssp C-HHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred C-HHHHHHHHHHHHHH--cCCCccEEEEEChHHHHHHHHHhcCCcE
Confidence 1 67777766666654 2446899999999999999999998863
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-07 Score=100.80 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=74.6
Q ss_pred CCccEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRS-ELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
...|+||++||..+.. ...|.. ....|++ .||.|+++|+||+|... +..+. ..-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAA--NNVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999965543 234655 3455665 48999999999976531 11100 0001123455566666653323
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++.+++.|+||||||.+++.++.++|+ ++.+++..|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 467899999999999999999999999 88888777654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00017 Score=80.41 Aligned_cols=252 Identities=12% Similarity=-0.010 Sum_probs=137.4
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEEC--CCCceecccc-ccccceeEEec----CCCEEEEEEecCCCCCceEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNL--NSGALCSKPQ-AVRVSNIAWAK----DGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl--~tg~~~~~~~-~~~~~~~~Wsp----Dg~~l~y~~~~~~~~~~~l~~ 197 (726)
..+++||||++|+.+ +.++ .|.++|+ ++++.+.... ......++||| ||+.||..... ...|.+
T Consensus 182 ~~v~~spdg~~l~v~-~~d~----~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~----~~~v~v 252 (543)
T 1nir_A 182 HISRMSASGRYLLVI-GRDA----RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW----PPQFAI 252 (543)
T ss_dssp EEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE----SSEEEE
T ss_pred ceEEECCCCCEEEEE-CCCC----eEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc----CCeEEE
Confidence 356799999998665 4443 5999999 7887654322 23456789999 99998877543 236888
Q ss_pred EEcCCCC-ceeEEeeec--------CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe-EEeeccCCceEEe
Q 004866 198 SIIGSTD-EDALLLEES--------NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL-TLIWECEGLAHCI 267 (726)
Q Consensus 198 ~~l~t~~-~~~lv~~~~--------d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~~~~ 267 (726)
+|..+.+ ..++-.... .......+.+|+|++.++++.. ....|+++|..+..... ..+..........
T Consensus 253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~--~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~ 330 (543)
T 1nir_A 253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK--ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGG 330 (543)
T ss_dssp EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET--TTTEEEEEECTTSSSCEEEEEECCSSCCCEE
T ss_pred EeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC--CCCeEEEEEecCCCcceeEEeccCcCccCce
Confidence 8887765 222211110 1112346788999998887664 34689999998743211 1232222223346
Q ss_pred eeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec----CCCceEEEEeeeCCEEEEEEEeCCeeEEEE
Q 004866 268 VEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID----DQGLVVEDVDFCKTHMALILREGRTYRLCS 343 (726)
Q Consensus 268 ~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~----~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~ 343 (726)
++++|+.||...+..+ .|..+|.. + .+....++. .......-+....+.++++. ..+...|.+
T Consensus 331 ~spdg~~l~va~~~~~--------~v~v~D~~-t---g~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~-~~~d~~V~v 397 (543)
T 1nir_A 331 WDSSHRYFMTAANNSN--------KVAVIDSK-D---RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS-HLGDGSISL 397 (543)
T ss_dssp ECTTSCEEEEEEGGGT--------EEEEEETT-T---TEEEEEEECSSSBCCTTCEEEEETTTEEEEEEE-BSSSSEEEE
T ss_pred ECCCCCEEEEEecCCC--------eEEEEECC-C---CeEEEeeccCCCCCCCCCcccCCCCCccEEEec-cCCCceEEE
Confidence 7888988876655432 35556765 2 222222221 11122221222234554443 323345777
Q ss_pred EecCCCCCC-cceeecccccccccCCC-ceeeeecCCCCcCCCcEEEEEEccCCCCc-----eEEEEECCCCeE
Q 004866 344 VSLPLPAGK-GVVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISSPVMPD-----AVVDYDLSYGKW 410 (726)
Q Consensus 344 ~~l~~~~~~-~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~-----~~~~~d~~~~~~ 410 (726)
++.++...+ ..+.+ ...++.+. ....+ ..++++..+.+ .++..|. .|..+|.++++.
T Consensus 398 ~d~~~~~~~~~~~~~----v~~l~~~g~~~~~v----~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 398 IGTDPKNHPQYAWKK----VAELQGQGGGSLFI----KTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EECCTTTCTTTBTSE----EEEEECSCSCCCCE----ECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EEeCCCCCchhcCeE----EEEEEcCCCCceEE----EcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCC
Confidence 877652110 00111 12333332 11212 23567776543 3334453 889999988764
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-07 Score=100.92 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=81.2
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCc---EEEEEccCCCCCC-----CCcccccc----c--------------
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGW---VVAFADVRGGGGG-----GKKWHHDG----R-------------- 546 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~---~v~~~d~RG~g~~-----g~~~~~~~----~-------------- 546 (726)
+.|.||++||..+.. ..|......|.++|| .|+.+|+||+|.+ ...|.... .
T Consensus 21 ~~ppVVLlHG~g~s~--~~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~~v 98 (484)
T 2zyr_A 21 DFRPVVFVHGLAGSA--GQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKI 98 (484)
T ss_dssp CCCCEEEECCTTCCG--GGGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHHHH
T ss_pred CCCEEEEECCCCCCH--HHHHHHHHHHHHcCCCcceEEEEECCCCCcccccccccccccccccccccccccccccccccc
Confidence 457789999976543 568888899999999 6999999998742 10010000 0
Q ss_pred -----ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCC---CceeEEEEeCCccc
Q 004866 547 -----RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP---DLFRAVVLEVPFLD 609 (726)
Q Consensus 547 -----~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d 609 (726)
.......++++.+.++.++++- ..+++.++||||||.+++.++.++| ++++++|+.+|..+
T Consensus 99 ~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 99 LSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred ccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0011134667777787777652 3378999999999999999999888 48999999988765
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=87.55 Aligned_cols=91 Identities=15% Similarity=0.052 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.|+++||..+.. ..|......|. .++.|+.+|++|.+. ..+|+.+.++.+. ...
T Consensus 22 ~~~l~~~hg~~~~~--~~~~~~~~~l~-~~~~v~~~d~~g~~~----------------~~~~~~~~i~~~~-----~~~ 77 (244)
T 2cb9_A 22 GKNLFCFPPISGFG--IYFKDLALQLN-HKAAVYGFHFIEEDS----------------RIEQYVSRITEIQ-----PEG 77 (244)
T ss_dssp SSEEEEECCTTCCG--GGGHHHHHHTT-TTSEEEEECCCCSTT----------------HHHHHHHHHHHHC-----SSS
T ss_pred CCCEEEECCCCCCH--HHHHHHHHHhC-CCceEEEEcCCCHHH----------------HHHHHHHHHHHhC-----CCC
Confidence 46789999976543 45666666654 689999999998532 3456665555442 135
Q ss_pred cEEEEEecccHHHHHHHHHcC---CCceeEEEEeCCcc
Q 004866 574 KLAGWGYSAGGLLVAAAINCC---PDLFRAVVLEVPFL 608 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~ 608 (726)
++.++|+|+||.++..++.+. ++.++.+|+..+..
T Consensus 78 ~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~ 115 (244)
T 2cb9_A 78 PYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYK 115 (244)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCC
T ss_pred CEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCC
Confidence 799999999999999888764 57788888776653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00011 Score=75.46 Aligned_cols=186 Identities=12% Similarity=-0.001 Sum_probs=112.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..+.|+|||++|+... .+| .|+++|+.+++...... ...+..+.|+||++.|+.... ...|+++++.
T Consensus 144 i~~~~~~~~~~~l~~~~-~dg----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d~~ 213 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCC-SDG----NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-----DNTVRSWDLR 213 (337)
T ss_dssp EEEEEECTTSSEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT
T ss_pred eEEEEECCCCCEEEEEe-CCC----cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec-----CCcEEEEECC
Confidence 55678999999998764 445 39999999987654322 345678999999998877642 2378899987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEec
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFTD 280 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~ 280 (726)
++.. ...+.. ......+.++|||++|++.... ..++++|+.++ ....+......+ ...++++++.|+..+.
T Consensus 214 ~~~~-~~~~~~--~~~v~~~~~s~~~~~l~~~~~~---~~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 214 EGRQ-LQQHDF--TSQIFSLGYCPTGEWLAVGMES---SNVEVLHVNKP--DKYQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp TTEE-EEEEEC--SSCEEEEEECTTSSEEEEEETT---SCEEEEETTSS--CEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCce-EeeecC--CCceEEEEECCCCCEEEEEcCC---CcEEEEECCCC--CeEEEcCCccceeEEEECCCCCEEEEecC
Confidence 7642 112221 2223468899999999877653 35888998873 333333333332 3456778887665544
Q ss_pred CcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEE
Q 004866 281 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLC 342 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~ 342 (726)
.+ .|..+++. . ........+ ...+..+.+.. +.++++...+|.-.++
T Consensus 286 dg---------~i~~~~~~-~---~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 286 DN---------LLNAWRTP-Y---GASIFQSKE--SSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp TS---------EEEEEETT-T---CCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CC---------cEEEEECC-C---CeEEEEecC--CCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 21 24445544 1 111112222 33455555543 3455555666654443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00022 Score=72.89 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=77.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||-+. .+| .|.+||+++++.+.... ...+..+.|+||++.|+....+ ..|.++++
T Consensus 15 ~V~~~~fsp~~~~l~s~~-~dg----~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-----~~i~vwd~ 84 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTL-YSG----RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-----FRIRVFNY 84 (304)
T ss_dssp CEEEEEECSSSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEET
T ss_pred ceEEEEECCCCCEEEEEc-CCC----cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC-----CEEEEEEC
Confidence 466788999999998764 444 59999999987654322 3356778999999988766432 36888899
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.+++. ...+... ......+.++|++++|+..+.+ ..|.++|+.++
T Consensus 85 ~~~~~-~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D---~~v~lWd~~~~ 129 (304)
T 2ynn_A 85 NTGEK-VVDFEAH-PDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENN 129 (304)
T ss_dssp TTCCE-EEEEECC-SSCEEEEEECSSSSEEEEEETT---SCEEEEEGGGT
T ss_pred CCCcE-EEEEeCC-CCcEEEEEEcCCCCEEEEECCC---CeEEEEECCCC
Confidence 87652 2233322 2234568899999988755543 34777787663
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00044 Score=72.90 Aligned_cols=199 Identities=9% Similarity=0.007 Sum_probs=112.3
Q ss_pred EeeceeeCCCC-CEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEec-CCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDH-KFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAK-DGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG-~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++||||| ++||... .+| .|.++|+.+++...... ...+..+.|+| |++.|+... . ...|.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~-~dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~----d~~i~ 144 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGS-KGG----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS-I----RGATT 144 (383)
T ss_dssp CEEEEEECSSCTTEEEEEE-BTS----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE-T----TTEEE
T ss_pred CEEEEEECCCCCCEEEEEc-CCC----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe-C----CCEEE
Confidence 46677899999 7877765 445 39999999887654321 34667899999 555555443 2 23688
Q ss_pred EEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEE
Q 004866 197 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFL 275 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l 275 (726)
++++.+.....+............+.|+||+++|+....+ ..|+++|+.. .....+......+ ...+++++..+
T Consensus 145 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 145 LRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST---GRLLLLGLDG--HEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT---SEEEEEETTS--CEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC---CCEEEEECCC--CEEEEeccCCCcEEEEEECCCCCCE
Confidence 8898753222111111111234568899999998776543 4788899843 3344444333333 33566777744
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCC-CCCceEEeecCCCceEEEEeeeC--CEEEEEEEeCCeeEEEEEecCCC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFP-SRTWESVFIDDQGLVVEDVDFCK--THMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
++....++ ..+++ ++. ... .......+.+ ...+..+.+.. +.++++...+| .|.++|+.++
T Consensus 220 l~s~~~d~------~i~iw--d~~-~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~~~~~d~--~i~iwd~~~~ 283 (383)
T 3ei3_B 220 MATSSVDA------TVKLW--DLR-NIKDKNSYIAEMPH--EKPVNAAYFNPTDSTKLLTTDQRN--EIRVYSSYDW 283 (383)
T ss_dssp EEEEETTS------EEEEE--EGG-GCCSTTCEEEEEEC--SSCEEEEEECTTTSCEEEEEESSS--EEEEEETTBT
T ss_pred EEEEeCCC------EEEEE--eCC-CCCcccceEEEecC--CCceEEEEEcCCCCCEEEEEcCCC--cEEEEECCCC
Confidence 44444332 23444 443 211 1222223332 33455666543 34555555555 4666776543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-05 Score=85.20 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=96.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc--c--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP--Q--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~--~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|+|||+.++++...+| .|+++|+.+++..... . ...+..++|+|||+.|+....+ ..|+++
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw 203 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDN----VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVI 203 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTS----CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEE
T ss_pred eEEEEEECcCCCCEEEEEcCCC----EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEE
Confidence 4667889999954444445555 3999999999766543 1 3456789999999988776433 378999
Q ss_pred EcCCCCceeEEe-eecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee-c-cCCceEEeeeecCCEE
Q 004866 199 IIGSTDEDALLL-EESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW-E-CEGLAHCIVEHHEGFL 275 (726)
Q Consensus 199 ~l~t~~~~~lv~-~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~-~-~~~~~~~~~~~~g~~l 275 (726)
++.++... ..+ ..........+.|+|||++|+..........|.++|+.+......... . ........++++++.|
T Consensus 204 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 204 EPRKGTVV-AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp ETTTTEEE-EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred eCCCCcee-eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 99876421 122 112222134578999999887765445567899999987543222222 1 1222345667888888
Q ss_pred EEEecCc
Q 004866 276 YLFTDAA 282 (726)
Q Consensus 276 ~~~t~~~ 282 (726)
++....+
T Consensus 283 ~~~g~~d 289 (402)
T 2aq5_A 283 YLCGKGD 289 (402)
T ss_dssp EEEETTC
T ss_pred EEEEcCC
Confidence 7776544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00028 Score=71.92 Aligned_cols=197 Identities=6% Similarity=-0.003 Sum_probs=114.0
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
++.|+|+++.|.|+ +..+. .|+.+|+++++............++|+|||+ |++.. . ..|++++..+++.
T Consensus 17 gp~w~~~~~~l~~~-d~~~~---~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~-~-----~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 17 SPVWEEVSNSLLFV-DIPAK---KVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATI-G-----TKFCALNWKEQSA 85 (297)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEE-T-----TEEEEEETTTTEE
T ss_pred CCeEECCCCEEEEE-ECCCC---EEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEE-C-----CeEEEEECCCCcE
Confidence 57899999988776 55443 5899999998764433344567899999999 55542 1 3799999877643
Q ss_pred eeEEeeecCC--ceEEEEEEcCCCcEEEEEEcC---------CCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCC
Q 004866 206 DALLLEESNE--NVYVNIRHTKDFHFVCVHTFS---------TTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEG 273 (726)
Q Consensus 206 ~~lv~~~~d~--~~~~~~~~s~Dg~~l~~~~~~---------~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~ 273 (726)
..+.....+. ....++.++|||+ |++.... .....||.++..+ ....+..... .....++++|+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g---~~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH---HVKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS---CEEEEEEEESBEEEEEECTTSC
T ss_pred EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC---CEEEEeeccccccceEEcCCCC
Confidence 2222111111 1234678899999 4554422 1235799998753 3333332221 22345678898
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCc--eEEeec--CCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW--ESVFID--DQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~v~~~--~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
.||+..... ..|++++++ . ..+.. ..++.. .......++.+.. +.|++....++ .|.+++.++
T Consensus 162 ~lyv~~~~~--------~~i~~~~~d-~-~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~--~v~~~d~~t 229 (297)
T 3g4e_A 162 IFYYIDSLS--------YSVDAFDYD-L-QTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG--RVIRLDPVT 229 (297)
T ss_dssp EEEEEEGGG--------TEEEEEEEC-T-TTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT--EEEEECTTT
T ss_pred EEEEecCCC--------CcEEEEecc-C-CCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC--EEEEEcCCC
Confidence 888765432 246666653 1 11222 112211 1123456676664 46666654443 578888764
Q ss_pred C
Q 004866 349 P 349 (726)
Q Consensus 349 ~ 349 (726)
+
T Consensus 230 G 230 (297)
T 3g4e_A 230 G 230 (297)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00016 Score=73.93 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=113.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||... .+| .|.++++.+++...... ...+..++|+||++.|+....+ ..|.++++
T Consensus 25 ~v~~~~~s~~~~~l~s~~-~dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~ 94 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSS-ADK----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD-----KTLKIWDV 94 (312)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred cEEEEEECCCCCEEEEee-CCC----eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC-----CEEEEEEC
Confidence 467788999999998774 444 38999999987655322 3456789999999988776432 36888898
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t 279 (726)
.+++.. ..+.... .....+.|+|++++|+..+.+ ..|.++|+.++. ....+......+ ...+++++..|+..+
T Consensus 95 ~~~~~~-~~~~~~~-~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 95 SSGKCL-KTLKGHS-NYVFCCNFNPQSNLIVSGSFD---ESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp TTCCEE-EEEECCS-SCEEEEEECSSSSEEEEEETT---SCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEE-EEEcCCC-CCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 876522 2222222 223457899999998766554 358888987742 223333222222 234567777665544
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
. ++ .|..+++. . ......+. ......+..+.+.. +..+++...+| .|.++|+.+
T Consensus 169 ~-d~--------~i~~wd~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~ 223 (312)
T 4ery_A 169 Y-DG--------LCRIWDTA-S--GQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDN--TLKLWDYSK 223 (312)
T ss_dssp T-TS--------CEEEEETT-T--CCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTT--EEEEEETTT
T ss_pred C-CC--------cEEEEECC-C--CceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCC--eEEEEECCC
Confidence 3 21 24445554 1 11112222 22223344444443 33444555555 466677654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-05 Score=83.41 Aligned_cols=196 Identities=9% Similarity=-0.036 Sum_probs=113.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++|+... .+| .|+++|+.+++.+.... ...+..++|+||++.++.+...+ ..|.++|+
T Consensus 141 ~V~~v~~spdg~~l~sgs-~dg----~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d----g~v~~wd~ 211 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGG-KDF----SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED----GRILLWDT 211 (357)
T ss_dssp CEEEEEECSSSSEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETT----SCEEECCT
T ss_pred CEEEEEECCCCCEEEEEe-CCC----eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccC----CceEEEEC
Confidence 366778999999998764 445 39999999997665422 34567789999998766664432 35788888
Q ss_pred CCCCc-eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEE
Q 004866 201 GSTDE-DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLF 278 (726)
Q Consensus 201 ~t~~~-~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~ 278 (726)
.+++. ..+... ........+.|+|++..+++.... ...|+++|+.++. ..+.+......+ ...++++++.+++.
T Consensus 212 ~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~g~~--d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 212 RKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFACGDE--TGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEEEES--SSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred CCCceeeeeeec-cccccccchhhhhcccceEEEeec--ccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 77652 111111 112233568899987655444332 2358888987743 233343333333 23456787765554
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecC
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
...++ . |...|+. . .+....+.+ ...+..+.+. ++.++++...+|.-.+ ++++
T Consensus 288 gs~D~------~--i~iwd~~-~---~~~~~~~~H--~~~V~~vafsP~d~~~l~s~s~Dg~v~i--W~~~ 342 (357)
T 4g56_B 288 ISEDC------T--VAVLDAD-F---SEVFRDLSH--RDFVTGVAWSPLDHSKFTTVGWDHKVLH--HHLP 342 (357)
T ss_dssp EETTS------C--EEEECTT-S---CEEEEECCC--SSCEEEEEECSSSTTEEEEEETTSCEEE--EECC
T ss_pred EeCCC------E--EEEEECC-C---CcEeEECCC--CCCEEEEEEeCCCCCEEEEEcCCCeEEE--EECC
Confidence 44332 2 4444554 1 222222222 2345666653 4567777777776554 4543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00012 Score=79.49 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=83.7
Q ss_pred cceeEEecCCCEEEEEEecCCCCCceEEEEEcC--CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEe
Q 004866 169 VSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG--STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLIN 246 (726)
Q Consensus 169 ~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~--t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 246 (726)
+..++|+|||+.|+++... ...|.++++. ++.....+...........+.|+|||++|+.... ...+++++
T Consensus 105 v~~~~~s~d~~~l~~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~g~v~~~~ 177 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADS----DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---FGDVYSID 177 (450)
T ss_dssp EEEEEECTTSSEEEEEEGG----GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECC----CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---CCcEEEEe
Confidence 5678999999998776533 2367777877 5543222221111222346889999999987755 34689999
Q ss_pred CCCCCCCe---EEeeccCCce-EEeeeec--CCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEE
Q 004866 247 AADPFSGL---TLIWECEGLA-HCIVEHH--EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVE 320 (726)
Q Consensus 247 ~~~~~~~~---~~l~~~~~~~-~~~~~~~--g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~ 320 (726)
+.++.... ..+......+ ...++++ ++.+++.+..++ ..+|+.+... .....++ ......+.
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~------~i~vwd~~~~-----~~~~~~~-~~h~~~v~ 245 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE------HIKISHYPQC-----FIVDKWL-FGHKHFVS 245 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS------CEEEEEESCT-----TCEEEEC-CCCSSCEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC------cEEEEECCCC-----ceeeeee-cCCCCceE
Confidence 87643211 1222222222 2356677 233444444332 2445444321 1112222 12223345
Q ss_pred EEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 321 DVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 321 ~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
.+.+..+.++++...++ .|.++|+.++
T Consensus 246 ~~~~sd~~~l~s~~~d~--~v~vwd~~~~ 272 (450)
T 2vdu_B 246 SICCGKDYLLLSAGGDD--KIFAWDWKTG 272 (450)
T ss_dssp EEEECSTTEEEEEESSS--EEEEEETTTC
T ss_pred EEEECCCCEEEEEeCCC--eEEEEECCCC
Confidence 54443444455555555 5667777654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00078 Score=69.49 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=112.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
...++|+|||+ |.++ +..+. .|+++|+++++...... ......++|+|||+ |++...........|++++..
T Consensus 47 ~~~~~~~~~g~-l~~~-~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLL-DVFEG---NIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp EEEEEECTTSC-EEEE-ETTTC---EEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTT
T ss_pred ccCcEECCCCC-EEEE-ECCCC---EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCC
Confidence 46778999999 4443 33332 59999999988665431 34567899999997 555433221122479999987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC----CceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEE
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST----TSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLY 276 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~ 276 (726)
++....++..........++.++|||+.+ +..... ....||.+|.++ ++.+.+..... .....++++|+.+|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFY-FTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSCEE-EEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred CCEEEEEEccCccCCcccceEECCCCCEE-EEeccccccCCCceEEEEeCCC--CEEEEeecCCCcccceEECCCCCEEE
Confidence 76533222211112233467889999754 444321 236799999876 34444433222 22345678888888
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceE----Ee-ecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWES----VF-IDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----v~-~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
+..... ..|++++.+ ..+ ..... +. .......+.++.... +.+++....++ .|.+++.+
T Consensus 198 v~~~~~--------~~i~~~d~~-~~g-~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~--~v~~~d~~ 262 (333)
T 2dg1_A 198 VTETTA--------NRLHRIALE-DDG-VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNKR 262 (333)
T ss_dssp EEEGGG--------TEEEEEEEC-TTS-SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECTT
T ss_pred EEeCCC--------CeEEEEEec-CCC-cCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC--EEEEECCC
Confidence 765432 236666664 111 11111 11 111113455666654 45655544333 56777753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-05 Score=79.07 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=108.6
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc------ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ------AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~------~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
+..++||||++ |+.. ..+| .|+|||+++++...... ...+..++|+|||+.|+-...+ ..|.+
T Consensus 85 v~~~~~s~d~~-l~~~-s~dg----~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~i 153 (344)
T 4gqb_B 85 VADLTWVGERG-ILVA-SDSG----AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKV 153 (344)
T ss_dssp EEEEEEETTTE-EEEE-ETTS----EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred EEEEEEeCCCe-EEEE-ECCC----EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEE
Confidence 56788999975 5444 3444 49999999987543211 2356789999999988766433 25888
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc---eEEeeeecCCE
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL---AHCIVEHHEGF 274 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~---~~~~~~~~g~~ 274 (726)
+++.+++. ...+..... ....+.|+++++.++++...+ ..|.++|+.++. ....+.....+ ....+.++++.
T Consensus 154 wd~~~~~~-~~~~~~h~~-~V~~~~~~~~~~~~l~s~s~D--~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 154 WDLAQQVV-LSSYRAHAA-QVTCVAASPHKDSVFLSCSED--NRILLWDTRCPK-PASQIGCSAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp EETTTTEE-EEEECCCSS-CEEEEEECSSCTTEEEEEETT--SCEEEEETTSSS-CEEECC----CCCEEEEEECSSCTT
T ss_pred EECCCCcE-EEEEcCcCC-ceEEEEecCCCCCceeeeccc--cccccccccccc-eeeeeecceeeccceeeeecCCCCc
Confidence 89887642 222322222 234578999998766655433 347788988743 22233222111 12334566665
Q ss_pred EEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+++....++ .|...|+. . ......+..+ ...+..+.+. +..++++...+|. |+++|+.+
T Consensus 229 ~l~sg~~dg--------~v~~wd~~-~--~~~~~~~~~h--~~~v~~v~fsp~g~~~lasgs~D~~--i~vwd~~~ 289 (344)
T 4gqb_B 229 VFVFGDENG--------TVSLVDTK-S--TSCVLSSAVH--SQCVTGLVFSPHSVPFLASLSEDCS--LAVLDSSL 289 (344)
T ss_dssp EEEEEETTS--------EEEEEESC-C----CCEEEECC--SSCEEEEEECSSSSCCEEEEETTSC--EEEECTTC
T ss_pred ceEEeccCC--------cEEEEECC-C--CcEEEEEcCC--CCCEEEEEEccCCCeEEEEEeCCCe--EEEEECCC
Confidence 555444332 24444554 2 1222333222 2335555543 4567777777775 55567654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.1e-05 Score=76.53 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=108.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..++|||||++||... ..| .|.++|+++++...... ...+..++|+|||+.|+....+ ..|.++++.
T Consensus 125 ~~~~~~spdg~~l~~g~-~dg----~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~ 194 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGT-HVG----KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID-----GIINIFDIA 194 (321)
T ss_dssp CCCEEECTTSSEEEEEC-TTS----EEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETT
T ss_pred EEEEEECCCCCEEEEEc-CCC----cEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCC-----CeEEEEECC
Confidence 44578999999998764 334 48999999987654322 3346789999999988876433 368888987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEec
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFTD 280 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~ 280 (726)
+++. ...+...... ...+.|+|||++|+..+.+ ..|.++|+.++. ....+......+ ...+++++..|+..+.
T Consensus 195 ~~~~-~~~~~~h~~~-v~~l~~spd~~~l~s~s~d---g~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 195 TGKL-LHTLEGHAMP-IRSLTFSPDSQLLVTASDD---GYIKIYDVQHAN-LAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp TTEE-EEEECCCSSC-CCEEEECTTSCEEEEECTT---SCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcE-EEEEcccCCc-eeEEEEcCCCCEEEEEcCC---CeEEEEECCCcc-eeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 7642 1122222222 2357899999988755443 358888987632 223333233322 3456778887655443
Q ss_pred CcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEE
Q 004866 281 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRL 341 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l 341 (726)
++ ..+| .++. . ......+. . ....+..+.+.. +..+++...+|.-++
T Consensus 269 -D~------~v~i--wd~~-~--~~~~~~~~-~-h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 269 -DK------SVKV--WDVG-T--RTCVHTFF-D-HQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp -TS------CEEE--EETT-T--TEEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred -CC------cEEE--EeCC-C--CEEEEEEc-C-CCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 21 2344 4443 1 11112221 1 223455666554 345566666665444
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=83.81 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.|+++||..+.. ..|......|. . +.|+.+|++|.+. ..+|+.+.++.+.. .+
T Consensus 17 ~~~l~~~hg~~~~~--~~~~~~~~~l~-~-~~v~~~d~~g~~~----------------~~~~~~~~i~~~~~-----~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGYG--LMYQNLSSRLP-S-YKLCAFDFIEEED----------------RLDRYADLIQKLQP-----EG 71 (230)
T ss_dssp SEEEEEECCTTCCG--GGGHHHHHHCT-T-EEEEEECCCCSTT----------------HHHHHHHHHHHHCC-----SS
T ss_pred CCCEEEECCCCCch--HHHHHHHHhcC-C-CeEEEecCCCHHH----------------HHHHHHHHHHHhCC-----CC
Confidence 46789999976543 45666666665 4 9999999998652 34566666665531 25
Q ss_pred cEEEEEecccHHHHHHHHHcC---CCceeEEEEeCCcc
Q 004866 574 KLAGWGYSAGGLLVAAAINCC---PDLFRAVVLEVPFL 608 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~ 608 (726)
++.++|||+||.++..++.+. ++.++.+|+..+..
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~ 109 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYK 109 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCE
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCC
Confidence 799999999999999888765 35678888776543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00021 Score=73.76 Aligned_cols=194 Identities=11% Similarity=0.058 Sum_probs=114.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|+|+++.+|-.. .+| .|++||+.+++.+.... ......++|+|||+.|+.... ...|.++++
T Consensus 82 ~v~~~~~~~~~~~l~s~s-~D~----~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~ 151 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSS-LDA----HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGV 151 (321)
T ss_dssp CEEEEEECSSSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEET
T ss_pred CEEEEEECCCCCEEEEEe-CCC----cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEc
Confidence 456678999999887653 444 59999999997654322 234567999999998877532 347888898
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t 279 (726)
.++... ..+.. .......+.|+|||++|+..+.++ .|.++|+.++. ....+...... ....+++++..|+..+
T Consensus 152 ~~~~~~-~~~~~-~~~~v~~~~~spdg~~lasg~~dg---~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 152 ESGKKE-YSLDT-RGKFILSIAYSPDGKYLASGAIDG---IINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp TTCSEE-EEEEC-SSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred CCCcee-EEecC-CCceEEEEEECCCCCEEEEEcCCC---eEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 776532 22222 223445789999999998766543 58888987732 22223222222 2345677777665443
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
. ++ . |...++. . ......+.. ....+..+.+.. +.++++...+|. +.++|+.+
T Consensus 226 ~-dg------~--i~iwd~~-~---~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~--v~iwd~~~ 279 (321)
T 3ow8_A 226 D-DG------Y--IKIYDVQ-H---ANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKS--VKVWDVGT 279 (321)
T ss_dssp T-TS------C--EEEEETT-T---CCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT
T ss_pred C-CC------e--EEEEECC-C---cceeEEEcC-CCCceEEEEECCCCCEEEEEeCCCc--EEEEeCCC
Confidence 3 22 2 3444443 1 122222222 223355555543 345556666664 55566653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.7e-05 Score=81.25 Aligned_cols=205 Identities=5% Similarity=-0.014 Sum_probs=111.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCC------CcEEEEEEEECCCCcee---cccc-ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKD------NDYFTLSVRNLNSGALC---SKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g------~e~~~l~v~dl~tg~~~---~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+..++|||||+.++++.+..| +....|+++|+.+++.. .... ...+..++|+||++.|+....+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 88 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN----- 88 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS-----
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC-----
Confidence 4566789999994444443333 33446999999988632 2111 3467789999999988776433
Q ss_pred ceEEEEEcCCCC---ceeEEeeecCCceEEEEEEcCC-CcEEEEEEcCCCceEEEEEeCCCCCC-----CeEEe---ecc
Q 004866 193 YQIYCSIIGSTD---EDALLLEESNENVYVNIRHTKD-FHFVCVHTFSTTSSKVFLINAADPFS-----GLTLI---WEC 260 (726)
Q Consensus 193 ~~l~~~~l~t~~---~~~lv~~~~d~~~~~~~~~s~D-g~~l~~~~~~~~~~~l~~~d~~~~~~-----~~~~l---~~~ 260 (726)
..|.++++.+.. .....+...... ...+.|+|| +++|+..+.+ ..|+++|+.++.. ....+ ...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSS-VKTVKFNAKQDNVLASGGNN---GEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSC-CCEEEECSSSTTBEEEECSS---SCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred CeEEEeecccccccccchhhccCCccc-eEEEEEcCCCCCEEEEEcCC---CeEEEEECCCCccccccccccccccccCC
Confidence 357788887621 122222222222 235789999 6766544432 3588888877431 11111 111
Q ss_pred CCc-eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCC-----CceEEEEeeeC--CEEEEE
Q 004866 261 EGL-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQ-----GLVVEDVDFCK--THMALI 332 (726)
Q Consensus 261 ~~~-~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-----~~~l~~~~~~~--~~lv~~ 332 (726)
... ....++++++.+++....++ .|..+++. . ......+.... ...+..+.+.. ..++++
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg--------~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSN--------FASIWDLK-A---KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSS--------CEEEEETT-T---TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCC--------CEEEEECC-C---CCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 111 23455677555555544332 24455554 1 11111222111 34466666554 356666
Q ss_pred EEeCC-eeEEEEEecCC
Q 004866 333 LREGR-TYRLCSVSLPL 348 (726)
Q Consensus 333 ~~~~g-~~~l~~~~l~~ 348 (726)
...++ ...|.++|+..
T Consensus 233 ~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 233 ATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EECCSSSCCCCEEETTS
T ss_pred EECCCCCceEEEEeCCC
Confidence 66665 23566777764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00011 Score=78.47 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=111.4
Q ss_pred EeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCce-------ecc-cc-ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGAL-------CSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~-------~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+..++||| |+++||... .+| .|.+||+.++.. +.. .. ...+..++|+||++.++++...+
T Consensus 83 ~V~~~~~~p~~~~~l~s~s-~dg----~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d---- 153 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGS-EDC----TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD---- 153 (402)
T ss_dssp CEEEEEECTTCTTEEEEEE-TTS----EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT----
T ss_pred CEEEEEeCCCCCCEEEEEe-CCC----eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC----
Confidence 567789999 899887764 444 499999998842 211 11 33567899999996555554332
Q ss_pred ceEEEEEcCCCCceeEEee-ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEe-eccCC--ceEEee
Q 004866 193 YQIYCSIIGSTDEDALLLE-ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI-WECEG--LAHCIV 268 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv~~-~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~--~~~~~~ 268 (726)
..|+++++.+++. ...+. .........+.|+|||++|+..+.+ ..|+++|+.++. ....+ ..... .....+
T Consensus 154 g~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 154 NVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALICTSCRD---KRVRVIEPRKGT-VVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp SCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCEEEEETT---SEEEEEETTTTE-EEEEEECSSCSSSCCEEEE
T ss_pred CEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEEEEEecC---CcEEEEeCCCCc-eeeeeccCCCCCcceEEEE
Confidence 3688889987642 22221 1122233568999999998876643 468999998732 22223 12222 233456
Q ss_pred eecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE-eecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 269 EHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV-FIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 269 ~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
++++..|+...+... +..|..+++. .... ..... +.......-..+...++.|++....+|. |+++++.
T Consensus 229 ~~~~~~l~~g~~~~~------d~~i~iwd~~-~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~--i~i~d~~ 298 (402)
T 2aq5_A 229 VSEGKILTTGFSRMS------ERQVALWDTK-HLEE-PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS--IRYFEIT 298 (402)
T ss_dssp CSTTEEEEEEECTTC------CEEEEEEETT-BCSS-CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC--EEEEEEC
T ss_pred cCCCcEEEEeccCCC------CceEEEEcCc-cccC-CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe--EEEEEec
Confidence 666654444322111 2346666664 2111 11111 1122222222344445667666655664 4555554
Q ss_pred C
Q 004866 348 L 348 (726)
Q Consensus 348 ~ 348 (726)
+
T Consensus 299 ~ 299 (402)
T 2aq5_A 299 S 299 (402)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00019 Score=76.76 Aligned_cols=118 Identities=14% Similarity=0.002 Sum_probs=75.7
Q ss_pred eCCCCCEEEEEEeCCCCcE-EEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCC-----CCCceEEEEEcCC
Q 004866 129 VSPDHKFLAYTMYDKDNDY-FTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN-----KRPYQIYCSIIGS 202 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~-~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~-----~~~~~l~~~~l~t 202 (726)
..||++++ |+.+...... ..|.++|+++++.+.....+....+.+||||++||.+..... .+...|..+|..+
T Consensus 80 p~~~~~~v-yV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 80 PAPDARRV-YIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCCTTEE-EEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCCEE-EEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 35789875 6666432111 579999999998776443332238999999999998753210 1234688889888
Q ss_pred CC-ceeEEee-e-----cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 203 TD-EDALLLE-E-----SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 203 ~~-~~~lv~~-~-----~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.+ ...+... . ...+. ++.+||||++|++... ...+.|.++|+.+.
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~--~~~~spDGk~lyV~n~-~~~~~VsVID~~t~ 210 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQW--MNALTPDNKNLLFYQF-SPAPAVGVVDLEGK 210 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGG--GSEECTTSSEEEEEEC-SSSCEEEEEETTTT
T ss_pred CcEEEEEECCCccccccCCCcc--eEEEcCCCCEEEEEec-CCCCeEEEEECCCC
Confidence 76 3333221 0 01121 3578999999988753 22467899999873
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0016 Score=69.69 Aligned_cols=256 Identities=10% Similarity=0.006 Sum_probs=132.9
Q ss_pred EEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEE
Q 004866 106 QKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQAL 181 (726)
Q Consensus 106 ~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l 181 (726)
+-+||...+..+ |.+.-+.||++ +.||.+.| + .|+|||+.+|+...+.. ...+..++|+|||+.|
T Consensus 94 ~~~l~ap~~~~d----~y~~~l~wS~~-n~lAvgld--~----tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 94 DRILDAPEIRND----YYLNLVDWSSG-NVLAVALD--N----SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp SEEEECTTCCCC----TTCBCEEECTT-SEEEEEET--T----EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEECCCCccc----ccceeEEECCC-CEEEEEeC--C----EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEE
Confidence 345666555443 23566789986 48888763 3 59999999998765432 2346789999999988
Q ss_pred EEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC
Q 004866 182 IYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE 261 (726)
Q Consensus 182 ~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 261 (726)
+....+ ..|.++++.+++. ...+...... . ..++.|++.|+..+.. ..+++.|..........+....
T Consensus 163 asgs~D-----g~v~iWd~~~~~~-~~~~~~h~~~-v--~~~s~~~~~l~sgs~d---~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 163 AVGTSS-----AEVQLWDVQQQKR-LRNMTSHSAR-V--GSLSWNSYILSSGSRS---GHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp EEEETT-----SCEEEEETTTTEE-EEEECCCSSC-E--EEEEEETTEEEEEETT---SEEEEEETTSSSCEEEEEECCS
T ss_pred EEEECC-----CeEEEEEcCCCcE-EEEEeCCCCc-e--EEEeeCCCEEEEEeCC---CceeEeeecccceeeEEecccc
Confidence 776433 3688888877642 1122222222 2 2345677776654432 3577777765433333333333
Q ss_pred Cce-EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEee--eCCEEEEEEEeCCe
Q 004866 262 GLA-HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF--CKTHMALILREGRT 338 (726)
Q Consensus 262 ~~~-~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~--~~~~lv~~~~~~g~ 338 (726)
... ...+.++|..++...+.+ ...|+..... .......... ......+..+.+ .+..++++..-..-
T Consensus 231 ~~~~~~~~~~~g~~l~s~~~D~-------~v~i~~~~~~-~~~~~~~~~~--~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 231 QEVCGLRWAPDGRHLASGGNDN-------LVNVWPSAPG-EGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-------CEEEEESSCC-SSCSCCSEEE--CCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred cceeeeeecCCCCeeeeeeccc-------cceEEeeccc-cccceeeeee--cccCCceeeeeeCCCcccEEEEEeecCC
Confidence 322 234557777766655432 2334433221 1011111111 122233444443 34555555432122
Q ss_pred eEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004866 339 YRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 410 (726)
Q Consensus 339 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 410 (726)
..|+++|+.++. .. ..+.....+.++. +..+++.++....+ .-..|..+|+.+++.
T Consensus 301 ~~I~iwd~~t~~-----~~-----~~~~~~~~v~~~~----~~~~~~~lv~~sg~--~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 301 RHIRIWNVCSGA-----CL-----SAVDAHSQVCSIL----WSPHYKELISGHGF--AQNQLVIWKYPTMAK 356 (420)
T ss_dssp CEEEEEETTTTE-----EE-----EEEECSSCEEEEE----EETTTTEEEEEECT--TTCCEEEEETTTCCE
T ss_pred CEEEEEeCCccc-----cc-----eeeccccceeeee----ecCCCCeEEEEEec--CCCEEEEEECCCCcE
Confidence 357777876532 11 1222223333322 24455665543322 225788889887764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0003 Score=79.77 Aligned_cols=194 Identities=8% Similarity=-0.064 Sum_probs=109.2
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
..+++||||++||+.. ++ .++++|+.+++...... ...+..++|||||+.|+-...+ ..|.++++.+
T Consensus 22 ~~~~~spdg~~l~~~~---~~---~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d-----~~v~lWd~~~ 90 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDTTQ 90 (611)
T ss_dssp CCCEECTTSSEEEEEE---TT---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEESSS
T ss_pred eEEeeCCCCCEEEeCC---CC---EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCC-----CCEEEeECCC
Confidence 3457999999999975 22 58999998876544322 3456789999999988766433 3688888865
Q ss_pred CC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEe
Q 004866 203 TD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 203 ~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t 279 (726)
+. .....+..... ....++|||||+.|+....... ...++++|.... ...+......+ ...++|++...++..
T Consensus 91 ~~~~~~~~~~~~~~-~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~---~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 91 TTHILKTTIPVFSG-PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS---NGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp TTCCEEEEEECSSS-CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB---CBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred CcceeeEeecccCC-ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC---cceecCCCCCceEEEECCCCCeEEEEE
Confidence 43 21222222222 2346899999999987665432 357888875331 11222222222 234567776444444
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
..++ ..+|+ +.. ..+....+.. ....+..+.+.. +.++++...+|. ++++++.+
T Consensus 167 s~D~------~v~lw--d~~----~~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~--i~lwd~~~ 221 (611)
T 1nr0_A 167 SDDN------TVAIF--EGP----PFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGT--IVLYNGVD 221 (611)
T ss_dssp ETTS------CEEEE--ETT----TBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT
T ss_pred eCCC------eEEEE--ECC----CCeEeeeecc-ccCceEEEEECCCCCEEEEEECCCc--EEEEECCC
Confidence 3332 24444 332 1112222222 233455555543 456666666765 44556544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00035 Score=73.82 Aligned_cols=75 Identities=7% Similarity=-0.128 Sum_probs=50.2
Q ss_pred ceeeCCCCCEEEEEEeC-----CCCcEEEEEEEECCCCceecccc-c--------cccceeEEecCCCEEEEEEecCCCC
Q 004866 126 LSEVSPDHKFLAYTMYD-----KDNDYFTLSVRNLNSGALCSKPQ-A--------VRVSNIAWAKDGQALIYVVTDQNKR 191 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~-----~g~e~~~l~v~dl~tg~~~~~~~-~--------~~~~~~~WspDg~~l~y~~~~~~~~ 191 (726)
.+.+||||++|.++... +|.....|.++|+++++.+.... . ..-..+.|||||++||++....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~--- 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA--- 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC---
Confidence 67899999998766321 12222358899999887654321 1 1234689999999999874321
Q ss_pred CceEEEEEcCCCC
Q 004866 192 PYQIYCSIIGSTD 204 (726)
Q Consensus 192 ~~~l~~~~l~t~~ 204 (726)
...|..+| .+++
T Consensus 147 ~~~v~viD-~t~~ 158 (373)
T 2mad_H 147 GPAVGLVV-QGGS 158 (373)
T ss_pred CCeEEEEE-CCCC
Confidence 24688888 7765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00018 Score=75.80 Aligned_cols=147 Identities=7% Similarity=0.024 Sum_probs=83.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC-CCceecccc---ccccceeEEecCCCEEE-EEEecC-----CC---
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-SGALCSKPQ---AVRVSNIAWAKDGQALI-YVVTDQ-----NK--- 190 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~-tg~~~~~~~---~~~~~~~~WspDg~~l~-y~~~~~-----~~--- 190 (726)
...++|||||++|+.+ +.. .|.+++++ +|+...... .+....++|+|||+.|+ |+.... .+
T Consensus 42 ~~~~a~spdg~~l~~~-~~~-----~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 42 ISWMTFDHERKNIYGA-AMK-----KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CSEEEECTTSSEEEEE-EBT-----EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CcEEEECCCCCEEEEE-ccc-----eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3456799999988544 432 58888887 776544321 12344589999999743 443100 00
Q ss_pred -CCceEEEEEcCC-CC-ceeE-EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC-CCCCCeEEeec------
Q 004866 191 -RPYQIYCSIIGS-TD-EDAL-LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA-DPFSGLTLIWE------ 259 (726)
Q Consensus 191 -~~~~l~~~~l~t-~~-~~~l-v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~-~~~~~~~~l~~------ 259 (726)
....+.++++.. +. ...+ ++..........+.|||||++|++.... ...|++++++ + ++.+.+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~--~~~v~~~~~~~~--g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT--ANKLWTHRKLAS--GEVELVGSVDAPDP 191 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTT--SCEEEEEEEECSST
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC--CCEEEEEEECCC--CCEEEeeeEecCCC
Confidence 123566666653 33 1111 1111122234468899999998765432 3578888887 4 33332211
Q ss_pred cCCceEEeeeecCCEEEEEec
Q 004866 260 CEGLAHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 260 ~~~~~~~~~~~~g~~l~~~t~ 280 (726)
........++++|+.+|+...
T Consensus 192 g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEET
T ss_pred CCCCCEeEECCCCCEEEEEEC
Confidence 112233467899998887654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00061 Score=72.53 Aligned_cols=195 Identities=10% Similarity=0.020 Sum_probs=111.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||.+. .+| .|.++|+.+++.+.... ...+..+.| +++.|+.... ...|+.+++
T Consensus 136 ~v~~v~~s~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-----dg~i~i~d~ 203 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGL-GNG----LVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR-----SGAIHHHDV 203 (401)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET-----TSEEEEEET
T ss_pred CEEEEEECCCCCEEEEEC-CCC----eEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC-----CCCEEEEec
Confidence 466788999999998875 345 39999999987665432 345677888 4565655432 247889998
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t 279 (726)
.........+..... ....+.|+||+++|+..+.+ ..|.++|+.++. ....+...... ....+++++..+++..
T Consensus 204 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 204 RIANHQIGTLQGHSS-EVCGLAWRSDGLQLASGGND---NVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp TSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETT---SCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred ccCcceeeEEcCCCC-CeeEEEEcCCCCEEEEEeCC---CeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEe
Confidence 754433333333222 34568899999998876654 358889998732 22223222222 2345667777777665
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC--CEEEEEEE-eCCeeEEEEEecCC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK--THMALILR-EGRTYRLCSVSLPL 348 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~--~~lv~~~~-~~g~~~l~~~~l~~ 348 (726)
.... +..|..+++. . ......+.. ...+..+.+.. +.++.... .+| .+.++++.+
T Consensus 279 ~gs~------d~~i~i~d~~-~---~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg--~i~v~~~~~ 336 (401)
T 4aez_A 279 GGTM------DKQIHFWNAA-T---GARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDN--NLSIWSYSS 336 (401)
T ss_dssp CCTT------TCEEEEEETT-T---CCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTC--EEEEEEEET
T ss_pred cCCC------CCEEEEEECC-C---CCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCC--cEEEEecCC
Confidence 4211 1235556654 2 222222222 23455555543 44444321 455 455555543
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-06 Score=87.62 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=65.6
Q ss_pred EEEEEcC--CCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 496 GLLHGHG--AYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 496 ~vl~~hG--g~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|+++|| +.+. ...|......|. .++.|+.+|.||.|....... .....+++++.+.+..++..- ....
T Consensus 91 ~l~~~hg~g~~~~--~~~~~~l~~~L~-~~~~v~~~d~~G~g~~~~~~~-----~~~~~~~~~~a~~~~~~i~~~-~~~~ 161 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFLRLSTSFQ-EERDFLAVPLPGYGTGTGTGT-----ALLPADLDTALDAQARAILRA-AGDA 161 (319)
T ss_dssp EEEEECCCCTTCS--TTTTHHHHHTTT-TTCCEEEECCTTCCBC---CB-----CCEESSHHHHHHHHHHHHHHH-HTTS
T ss_pred cEEEeCCCCCCCc--HHHHHHHHHhcC-CCCceEEecCCCCCCCccccc-----CCCCCCHHHHHHHHHHHHHHh-cCCC
Confidence 7889997 3332 234666666554 789999999999886310000 011235565554443333221 1236
Q ss_pred cEEEEEecccHHHHHHHHHcC----CCceeEEEEeCCc
Q 004866 574 KLAGWGYSAGGLLVAAAINCC----PDLFRAVVLEVPF 607 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~p~ 607 (726)
++.++|+|+||.++..++.+. ++.++.+|+..+.
T Consensus 162 p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~ 199 (319)
T 2hfk_A 162 PVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPY 199 (319)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCC
T ss_pred CEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCC
Confidence 799999999999999998876 4568888877654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0015 Score=67.87 Aligned_cols=239 Identities=9% Similarity=-0.029 Sum_probs=126.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|||||++||-.. .+| .|++||+.+++...... ...+..++|+|||+.|+....+ ..+.++++
T Consensus 57 ~v~~~~~s~d~~~l~s~s-~Dg----~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~ 126 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSAS-QDG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-----NICSIYNL 126 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTT----EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT-----CEEEEEET
T ss_pred ceEEEEECCCCCEEEEEe-CCC----cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC-----CeEEEEEC
Confidence 466778999999987764 444 59999999987654322 3356778999999988766433 36778888
Q ss_pred CCCC-ceeEEeee-cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEE
Q 004866 201 GSTD-EDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYL 277 (726)
Q Consensus 201 ~t~~-~~~lv~~~-~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~ 277 (726)
.+.. ...+.... ........+.++++++ |+..+. ...|.++|+.++. ....+......+ ...+++++..|+.
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~---d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG---DTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEET---TSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEEC---CCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCCEEEE
Confidence 7654 11221111 1122234567888886 433333 2357888987732 222232222222 2345677765544
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCCCCCCccee
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPLPAGKGVVH 356 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~ 356 (726)
.+. ++ . |...++. . ......+.. ....+..+.+.. +.++++...+|. +.++|+..+. .
T Consensus 202 g~~-d~------~--v~~wd~~-~---~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~--v~iwd~~~~~-----~ 260 (340)
T 1got_B 202 GAC-DA------S--AKLWDVR-E---GMCRQTFTG-HESDINAICFFPNGNAFATGSDDAT--CRLFDLRADQ-----E 260 (340)
T ss_dssp EET-TS------C--EEEEETT-T---CSEEEEECC-CSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTTE-----E
T ss_pred EeC-CC------c--EEEEECC-C---CeeEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCc--EEEEECCCCc-----E
Confidence 332 22 2 4444544 1 111222222 233455555543 455566666664 4556665321 1
Q ss_pred ecccccccccCCC---ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004866 357 LKELHPHFLPLPK---YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 410 (726)
Q Consensus 357 ~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 410 (726)
+ ..+..+. .+.++ .+++++..++.... -..+..+|..+++.
T Consensus 261 ~-----~~~~~~~~~~~v~~~----~~s~~g~~l~~g~~----d~~i~vwd~~~~~~ 304 (340)
T 1got_B 261 L-----MTYSHDNIICGITSV----SFSKSGRLLLAGYD----DFNCNVWDALKADR 304 (340)
T ss_dssp E-----EEECCTTCCSCEEEE----EECTTSSEEEEEET----TSEEEEEETTTCCE
T ss_pred E-----EEEccCCcccceEEE----EECCCCCEEEEECC----CCeEEEEEcccCcE
Confidence 1 1111111 22222 23556665543322 24788888876654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00035 Score=74.29 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=85.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc--------------------cccceeEEecCCCEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA--------------------VRVSNIAWAKDGQALI 182 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~--------------------~~~~~~~WspDg~~l~ 182 (726)
.+..++|||||++||.+.+ + .+.++++.+|+.+..... ..+..++|+|||+.|+
T Consensus 66 ~V~~v~fspdg~~la~g~~--~----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN--K----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CCCEEEECTTSSEEEEECB--S----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCEEEEEcC--C----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 4567789999999998643 2 378999999876532110 0256789999999887
Q ss_pred EEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC
Q 004866 183 YVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG 262 (726)
Q Consensus 183 y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 262 (726)
....+ ..|.++++.+++. ...+..... ....+.|+|||++|+..+.+ ..+.++|+.++ +.........
T Consensus 140 s~~~d-----~~i~iwd~~~~~~-~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d---~~v~iwd~~~~--~~~~~~~~~~ 207 (393)
T 1erj_A 140 TGAED-----RLIRIWDIENRKI-VMILQGHEQ-DIYSLDYFPSGDKLVSGSGD---RTVRIWDLRTG--QCSLTLSIED 207 (393)
T ss_dssp EEETT-----SCEEEEETTTTEE-EEEECCCSS-CEEEEEECTTSSEEEEEETT---SEEEEEETTTT--EEEEEEECSS
T ss_pred EEcCC-----CeEEEEECCCCcE-EEEEccCCC-CEEEEEEcCCCCEEEEecCC---CcEEEEECCCC--eeEEEEEcCC
Confidence 66433 3688889877542 222322222 23468899999998765543 46788898773 3222222222
Q ss_pred c-eEEeeee-cCCEEEEEe
Q 004866 263 L-AHCIVEH-HEGFLYLFT 279 (726)
Q Consensus 263 ~-~~~~~~~-~g~~l~~~t 279 (726)
. ....+++ +|..|+..+
T Consensus 208 ~v~~~~~~~~~~~~l~~~s 226 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGS 226 (393)
T ss_dssp CEEEEEECSTTCCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEc
Confidence 2 2334555 555554433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00057 Score=76.92 Aligned_cols=198 Identities=10% Similarity=0.064 Sum_probs=111.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC----ceecccc--ccc-cceeEEec--CCCEEEEEEecCCCCCc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG----ALCSKPQ--AVR-VSNIAWAK--DGQALIYVVTDQNKRPY 193 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg----~~~~~~~--~~~-~~~~~Wsp--Dg~~l~y~~~~~~~~~~ 193 (726)
.+..++|||||++||+.. ++ .|.++|++++ +...... ... +..++|+| |++.|+....+ .
T Consensus 20 ~v~~~~~spdg~~l~~~~--~~----~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d-----g 88 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC--GK----SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-----G 88 (615)
T ss_dssp CCCCCEEETTTTEEEEEE--TT----EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-----S
T ss_pred ceeEEEECCCCCEEEEec--CC----eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCC-----C
Confidence 466788999999999986 23 5999999988 5443222 345 77899999 99988776432 3
Q ss_pred eEEEEEcCCC------C-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-ceEEEEEeCCCCCCCeEEeeccCCce-
Q 004866 194 QIYCSIIGST------D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-SSKVFLINAADPFSGLTLIWECEGLA- 264 (726)
Q Consensus 194 ~l~~~~l~t~------~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~d~~~~~~~~~~l~~~~~~~- 264 (726)
.|.++++.++ . .....+..... ....+.|+|||++|+....... ...|+++|... ....+......+
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAG-PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---EEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccc-cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---cceeeecCCccEE
Confidence 5777777543 1 11112222222 2356889999999988775433 35788887322 233333322222
Q ss_pred EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCC--ceEEEEeeeC--CEEEEEEEeCCeeE
Q 004866 265 HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQG--LVVEDVDFCK--THMALILREGRTYR 340 (726)
Q Consensus 265 ~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~~~~~--~~lv~~~~~~g~~~ 340 (726)
...+++++..+++....++ .|..+++. . ......+..... ..+..+.+.. +.++++...+| .
T Consensus 165 ~~~~~~~~~~~l~~~~~d~--------~v~vwd~~-~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~ 230 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDG--------SVVFYQGP-P---FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR--K 230 (615)
T ss_dssp EEEECSSSSCEEEEEETTT--------EEEEEETT-T---BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC--C
T ss_pred EEEECCCCCcEEEEEeCCC--------cEEEEeCC-C---cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC--e
Confidence 2345677774444443332 24444443 1 111112222111 1455555543 34555555565 4
Q ss_pred EEEEecCCC
Q 004866 341 LCSVSLPLP 349 (726)
Q Consensus 341 l~~~~l~~~ 349 (726)
|+++++.++
T Consensus 231 i~vwd~~~~ 239 (615)
T 1pgu_A 231 ISCFDGKSG 239 (615)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 566776543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00032 Score=73.09 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=109.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc---c--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP---Q--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~---~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
+..++|||||++||... .+| .|+|||++++...... . ...+..++|+|||+.|+....|. .+.++
T Consensus 19 v~~l~~sp~g~~las~~-~D~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw 88 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCG-GDR----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIW 88 (345)
T ss_dssp EEEEEECTTSSCEEEEE-TTS----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEE
T ss_pred EEEEEECCCCCEEEEEc-CCC----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEE
Confidence 44578999999998774 344 3899999888543211 1 33567899999999887765432 46666
Q ss_pred EcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeE---EeeccCCce-EEeeeecCC
Q 004866 199 IIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT---LIWECEGLA-HCIVEHHEG 273 (726)
Q Consensus 199 ~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~---~l~~~~~~~-~~~~~~~g~ 273 (726)
++.++. .....+.... .....+.|+|||++|+..+.++ .|+++|+.++. ... .+......+ ...+++++.
T Consensus 89 ~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~D~---~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRDK---SVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EECCC-EEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS---CEEEEEECTTS-CEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EccCCCeEEEEEccCCC-CCceEEEEeCCCCEEEEEECCC---eEEEEECCCCC-CeEEEEEecCcCCCeEEEEECCCCC
Confidence 665543 2222222222 2234689999999987665433 47777776532 222 222222222 234567777
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEe-ecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEe
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVF-IDDQGLVVEDVDFCK-THMALILREGRTYRLCSVS 345 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~ 345 (726)
.|+..+..+ ..+|+.... ..|..+. .......+..+.+.. +.++++...+|.-+|+...
T Consensus 164 ~l~s~s~d~-------~i~~w~~~~------~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 164 LLASASYDD-------TVKLYREEE------DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CEEEEETTS-------CEEEEEEET------TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEeCCC-------cEEEEEecC------CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 665544322 245554432 2222111 122233455666553 4556677777776666543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0013 Score=67.92 Aligned_cols=196 Identities=13% Similarity=0.030 Sum_probs=110.2
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
.++.|+||++.|.|+ +..+. .|+++|+++++............+.|+|||+.++.+ . ..|++++..++.
T Consensus 52 egp~~~~~~~~l~~~-d~~~~---~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~--~-----~gl~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWF-NILER---ELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS--D-----DGLFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEE-EGGGT---EEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE--T-----TEEEEEETTTCC
T ss_pred cCCeEeCCCCEEEEE-ECCCC---EEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE--C-----CCEEEEECCCCc
Confidence 357899999988776 44433 599999999876543334456778999999754432 1 259999987765
Q ss_pred ceeEEeeecC---CceEEEEEEcCCCcEEEEEEcCC----CceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEE
Q 004866 205 EDALLLEESN---ENVYVNIRHTKDFHFVCVHTFST----TSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLY 276 (726)
Q Consensus 205 ~~~lv~~~~d---~~~~~~~~~s~Dg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~ 276 (726)
...+ ..... .....++.++|||+. ++..... ....||.++ + ++.+.+..... .....++++|+.+|
T Consensus 121 ~~~~-~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~--g~~~~~~~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 121 LTLH-AELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--K--GKVTKLFADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp EEEE-ECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--T--TEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred EEEE-eeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--C--CcEEEeeCCCcccCCeEEcCCCCEEE
Confidence 3222 22111 122346789999984 4443221 246899999 3 34444433221 12345678888888
Q ss_pred EEecCcccCCCCCCeEEEEeeCCC-CC-CCCCceEEee-cCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDA-SF-PSRTWESVFI-DDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~v~~-~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
+..... ..|+.++++. +. ....-+.+.. ........++.+.. +.|++....+ ..|.+++.+
T Consensus 195 v~~~~~--------~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~--~~v~~~d~~ 259 (326)
T 2ghs_A 195 FVDTKV--------NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE--GAVDRYDTD 259 (326)
T ss_dssp EEETTT--------CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--TEEEEECTT
T ss_pred EEECCC--------CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC--CEEEEECCC
Confidence 864432 3467776530 11 1111111211 11223455666664 4555554333 357778763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.14 E-value=8.8e-05 Score=78.20 Aligned_cols=158 Identities=12% Similarity=0.091 Sum_probs=95.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc-c---ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-Q---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++||...+ + .+.+++..+++..... . ...+..++|+|||+.|+....+.. ....++.+
T Consensus 178 ~V~~v~fspdg~~l~s~s~--~----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~-~~~~i~~~ 250 (365)
T 4h5i_A 178 EVKDLHFSTDGKVVAYITG--S----SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG-KGIVLTKI 250 (365)
T ss_dssp CCCEEEECTTSSEEEEECS--S----CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS-CCEEEEEE
T ss_pred ceEEEEEccCCceEEeccc--e----eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc-ceeEEeec
Confidence 3667899999999988752 2 2678888888755321 1 234677899999998887765532 33356666
Q ss_pred EcCCCCcee-EEeee-cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-cCCce-EEeeeecCCE
Q 004866 199 IIGSTDEDA-LLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-CEGLA-HCIVEHHEGF 274 (726)
Q Consensus 199 ~l~t~~~~~-lv~~~-~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~-~~~~~~~g~~ 274 (726)
++....... ..... ........+++||||++|+..+.++ .|.++|+.++. ....+.. ....+ ...++|||+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~---~V~iwd~~~~~-~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN---SIALVKLKDLS-MSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS---CEEEEETTTTE-EEEEETTSSSSCEEEEEECTTSCE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC---EEEEEECCCCc-EEEEecCcccCCEEEEEECCCCCE
Confidence 765543111 11111 1112234678999999998776543 58889998732 1222222 22222 3457888887
Q ss_pred EEEEecCcccCCCCCCeEEEEeeC
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPV 298 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~ 298 (726)
|+-.+. ++ ..+|+.++.
T Consensus 327 laS~S~-D~------tvrvw~ip~ 343 (365)
T 4h5i_A 327 VASVSA-AN------TIHIIKLPL 343 (365)
T ss_dssp EEEEET-TS------EEEEEECCT
T ss_pred EEEEeC-CC------eEEEEEcCC
Confidence 665443 22 366776654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00089 Score=70.33 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=52.5
Q ss_pred ceeeCCCCCEEEEEEe-----CCCCcEEEEEEEECCCCceecccc-c-------cccceeEEecCCCEEEEEEecCCCCC
Q 004866 126 LSEVSPDHKFLAYTMY-----DKDNDYFTLSVRNLNSGALCSKPQ-A-------VRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~-~-------~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+.+||||++|..+.. ..|.....|.++|+++++.+.... . .....++++|||++||..... ..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~ 130 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PA 130 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CC
Confidence 6789999999865532 134445579999999987664322 1 134578999999999877432 12
Q ss_pred ceEEEEEcCCCC
Q 004866 193 YQIYCSIIGSTD 204 (726)
Q Consensus 193 ~~l~~~~l~t~~ 204 (726)
..|.++|+.+.+
T Consensus 131 ~~v~v~d~~~~~ 142 (361)
T 2oiz_A 131 TSIGIVDVAKGD 142 (361)
T ss_dssp EEEEEEETTTTE
T ss_pred CeEEEEECCCCc
Confidence 468888987764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0014 Score=73.03 Aligned_cols=260 Identities=11% Similarity=0.035 Sum_probs=141.9
Q ss_pred ceeeC----CCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc-------------cccceeEEecCCCEEEEEEecC
Q 004866 126 LSEVS----PDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-------------VRVSNIAWAKDGQALIYVVTDQ 188 (726)
Q Consensus 126 ~~~~S----PDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~-------------~~~~~~~WspDg~~l~y~~~~~ 188 (726)
.+.+| |||++++.+....+ ++.|+|.+|.+.+..... .....+..|+++..+++...
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-- 317 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-- 317 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETT----EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--
T ss_pred eeEEccccCCCCCEEEEEEccCC----eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec--
Confidence 46799 79999876644333 478999999887653221 13456778898887766642
Q ss_pred CCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc--CC---c
Q 004866 189 NKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC--EG---L 263 (726)
Q Consensus 189 ~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~---~ 263 (726)
...+|++++..+.... .+..-....+.-+..|+|||+++++..+. .+.|.++|+.++ ++....+- .. +
T Consensus 318 --~~g~v~~vd~~~~~~~-~v~~i~~~~~~~d~~~~pdgr~~~va~~~--sn~V~ViD~~t~--kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 318 --ETGKILLVDYTDLNNL-KTTEISAERFLHDGGLDGSHRYFITAANA--RNKLVVIDTKEG--KLVAIEDTGGQTPHPG 390 (567)
T ss_dssp --TTTEEEEEETTCSSEE-EEEEEECCSSEEEEEECTTSCEEEEEEGG--GTEEEEEETTTT--EEEEEEECSSSSBCCT
T ss_pred --CCCeEEEEecCCCccc-eeeeeeccccccCceECCCCCEEEEEeCC--CCeEEEEECCCC--cEEEEEeccCcCCCCc
Confidence 2358999998654311 12122223444567899999999887753 467899999874 33222221 11 1
Q ss_pred eEE-eeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCC--CCCCCceEEe--ecCCCc-eEEEEeeeCCEEEEEEEeCC
Q 004866 264 AHC-IVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS--FPSRTWESVF--IDDQGL-VVEDVDFCKTHMALILREGR 337 (726)
Q Consensus 264 ~~~-~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~v~--~~~~~~-~l~~~~~~~~~lv~~~~~~g 337 (726)
... .+.++++.+|+.++.+. -.|..++.+ . .....|+.+- ...... ..-..++.++++++...-+.
T Consensus 391 ~g~~~~~p~~g~v~~t~~~g~-------~~Vsvid~~-~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 391 RGANFVHPTFGPVWATSHMGD-------DSVALIGTD-PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp TCEEEEETTTEEEEEEEBSSS-------SEEEEEECC-TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS
T ss_pred cceeeECCCCCcEEEeCCCCC-------CeEEEecCC-CCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC
Confidence 111 24566677776665432 235566654 1 0112365432 211111 11123444567776653222
Q ss_pred ----eeEEEEEecCCC--CCCcceeecccccccc----cCCCceeeeecCCCCcCCCcEEEEEE-ccCCCCceEEEEECC
Q 004866 338 ----TYRLCSVSLPLP--AGKGVVHLKELHPHFL----PLPKYVSQIVPGPNYDYYSSTMRFAI-SSPVMPDAVVDYDLS 406 (726)
Q Consensus 338 ----~~~l~~~~l~~~--~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~-ss~~~P~~~~~~d~~ 406 (726)
...|.++|+.+. .+.. ..+ +...+ .+|+..... ....++.+++.+.++. +.-...+.|..+|.+
T Consensus 463 ~~~~~~~v~v~d~~~~~~~g~~-~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 463 EAEISGSVAVFDIKAMTGDGSD-PEF---KTLPIAEWAGITEGQPRV-VQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp SHHHHTCEEEEEGGGCCCSSSC-CCE---EEECHHHHHTCCSSCCEE-EEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CcccCceEEEEECCcccccccC-CCc---EEeccccccccCCCCcce-EeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence 347888887643 1100 000 00111 122211111 1234567888887765 333467899999999
Q ss_pred CCeEE
Q 004866 407 YGKWN 411 (726)
Q Consensus 407 ~~~~~ 411 (726)
++++.
T Consensus 538 t~~~~ 542 (567)
T 1qks_A 538 TLELK 542 (567)
T ss_dssp TTEEE
T ss_pred CceEE
Confidence 88764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0003 Score=75.11 Aligned_cols=197 Identities=11% Similarity=0.028 Sum_probs=112.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++|+... .+| .|+++|+.+++...... ...+..++|+||++.|+....+ ..|.++++
T Consensus 141 ~v~~~~~~~~~~~l~s~s-~d~----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~ 210 (420)
T 3vl1_A 141 EITKLKFFPSGEALISSS-QDM----QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-----GTIRLWEC 210 (420)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEET
T ss_pred ccEEEEECCCCCEEEEEe-CCC----eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeEC
Confidence 466789999999988764 444 59999999987654322 3456789999999988765433 25777888
Q ss_pred CCCCceeEEeeecC---Cc--------------------eEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEe
Q 004866 201 GSTDEDALLLEESN---EN--------------------VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI 257 (726)
Q Consensus 201 ~t~~~~~lv~~~~d---~~--------------------~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l 257 (726)
.+++. ...+.... .. ....+.|+|||++|+.....+ .|.++|+.++. ....+
T Consensus 211 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~-~~~~~ 285 (420)
T 3vl1_A 211 GTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG---VITVHNVFSKE-QTIQL 285 (420)
T ss_dssp TTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS---CEEEEETTTCC-EEEEE
T ss_pred CCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC---eEEEEECCCCc-eeEEc
Confidence 76542 11222110 00 001245689999987766543 48888987743 22223
Q ss_pred ecc-CCc-eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEe
Q 004866 258 WEC-EGL-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILRE 335 (726)
Q Consensus 258 ~~~-~~~-~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~ 335 (726)
... ... ....+++++..+++....++ .|..+++. ... .....+..+ ....+..+....+.++++...
T Consensus 286 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg--------~i~vwd~~-~~~-~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~ 354 (420)
T 3vl1_A 286 PSKFTCSCNSLTVDGNNANYIYAGYENG--------MLAQWDLR-SPE-CPVGEFLIN-EGTPINNVYFAAGALFVSSGF 354 (420)
T ss_dssp CCTTSSCEEEEEECSSCTTEEEEEETTS--------EEEEEETT-CTT-SCSEEEEES-TTSCEEEEEEETTEEEEEETT
T ss_pred ccccCCCceeEEEeCCCCCEEEEEeCCC--------eEEEEEcC-CCc-Cchhhhhcc-CCCCceEEEeCCCCEEEEecC
Confidence 222 222 23456677773344333332 35555654 211 123333322 334555655556677777766
Q ss_pred CCeeEEEEEecC
Q 004866 336 GRTYRLCSVSLP 347 (726)
Q Consensus 336 ~g~~~l~~~~l~ 347 (726)
+|.-+ ++++.
T Consensus 355 d~~v~--iw~~~ 364 (420)
T 3vl1_A 355 DTSIK--LDIIS 364 (420)
T ss_dssp TEEEE--EEEEC
T ss_pred CccEE--EEecc
Confidence 66544 44543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00059 Score=70.92 Aligned_cols=162 Identities=8% Similarity=0.060 Sum_probs=99.4
Q ss_pred EeeceeeCC--CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSP--DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SP--DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.+..+.|+| +|++|+-.. .+| .|+++|+.+++...... ...+..++|+|||+.|+.... ...|.+
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s-~dg----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~-----dg~i~i 196 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWAD-NRG----TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP-----DGILDV 196 (343)
T ss_dssp CEEEEECCC---CCEEEEEE-TTC----CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT-----TSCEEE
T ss_pred CEEEEEcCCCCCCCEEEEEe-CCC----cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC-----CCEEEE
Confidence 366778999 999988764 455 39999999998754321 234678999999997766432 236888
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec---cCCc---eEEeeeec
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE---CEGL---AHCIVEHH 271 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~---~~~~---~~~~~~~~ 271 (726)
+|+.++......+..........+.|+|||++|+..+. + .|.++|+.+... ...+.. .... ....++++
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~---~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q---TVVCFDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S---BEEEEETTSSTT-CBSSCCCBC-----CCEEEEECTT
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C---eEEEEEcCCCCc-ceeecccccccccccceEEEECCC
Confidence 99987753212333312223456899999999887763 2 688899977431 111111 1111 12566788
Q ss_pred CCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE
Q 004866 272 EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES 309 (726)
Q Consensus 272 g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (726)
|..|+..+..++ ..+|+.++.. ...|..
T Consensus 272 g~~l~~~s~~d~------~i~v~~~~~~----~~~~~~ 299 (343)
T 3lrv_A 272 GKNMIAYSNESN------SLTIYKFDKK----TKNWTK 299 (343)
T ss_dssp SSEEEEEETTTT------EEEEEEECTT----TCSEEE
T ss_pred CCEEEEecCCCC------cEEEEEEccc----ccceEe
Confidence 887776554232 2556665433 345654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00027 Score=71.76 Aligned_cols=236 Identities=9% Similarity=-0.006 Sum_probs=126.3
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
.++.|+|||+.|.++....+ .|+++|++++ ...... ......++|+|||+ |+++.. ....|++++..++
T Consensus 31 eg~~~d~~g~~l~~~~~~~~----~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~----~~~~i~~~d~~~g 100 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQN----RTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGH-LIACSH----GLRRLERQREPGG 100 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGT----EEEEEETTSC-EEEEESSCSSEEEEEECTTCC-EEEEET----TTTEEEEECSTTC
T ss_pred cCCeEeCCCCEEEEEeCCCC----EEEEEECCCC-eEEEECCCCCcceeeECCCCc-EEEEec----CCCeEEEEcCCCC
Confidence 46789999998777643333 5999999988 433322 33456789999998 555432 2247999988666
Q ss_pred CceeEEeeecCCc--eEEEEEEcCCCcEEEEEEcC---------------CCceEEEEEeCCCCCCCeEEeeccCCc-eE
Q 004866 204 DEDALLLEESNEN--VYVNIRHTKDFHFVCVHTFS---------------TTSSKVFLINAADPFSGLTLIWECEGL-AH 265 (726)
Q Consensus 204 ~~~~lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~---------------~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~ 265 (726)
+...+........ ...++.++|||+. +++... .....||.++..+ ..+.+...... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g---~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSL-WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG---TLSAPIRDRVKPNG 176 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCE-EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS---CEEEEECCCSSEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCE-EEECCccccccccccccccccCCCcEEEEECCCC---CEEEeecCCCCCcc
Confidence 5322221111111 1124678999984 443211 1135799998762 34444333222 23
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCc---eEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEE
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW---ESVFIDDQGLVVEDVDFCK-THMALILREGRTYRL 341 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l 341 (726)
..++++|+.+ +. +... ..|+.++++ . .+.. ..++ ......+.++.+.. +.|++.. + ..|
T Consensus 177 i~~s~dg~~l-v~-~~~~-------~~i~~~~~~-~--~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~--~~v 239 (296)
T 3e5z_A 177 LAFLPSGNLL-VS-DTGD-------NATHRYCLN-A--RGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--G--DGV 239 (296)
T ss_dssp EEECTTSCEE-EE-ETTT-------TEEEEEEEC-S--SSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--T--TEE
T ss_pred EEECCCCCEE-EE-eCCC-------CeEEEEEEC-C--CCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--C--CeE
Confidence 4567888877 43 3221 346666654 1 1223 2233 21222233455543 4566655 2 357
Q ss_pred EEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeE
Q 004866 342 CSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW 410 (726)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 410 (726)
.+++.+. . .+ ..+..|....++..+ ..+++.+.++-. ..+++++++++++
T Consensus 240 ~~~~~~g-~-----~~-----~~~~~~~~~~~~~f~---~~d~~~L~v~t~-----~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 240 HVLTPDG-D-----EL-----GRVLTPQTTSNLCFG---GPEGRTLYMTVS-----TEFWSIETNVRGL 289 (296)
T ss_dssp EEECTTS-C-----EE-----EEEECSSCCCEEEEE---STTSCEEEEEET-----TEEEEEECSCCBC
T ss_pred EEECCCC-C-----EE-----EEEECCCCceeEEEE---CCCCCEEEEEcC-----CeEEEEEcccccc
Confidence 7787642 1 11 123333322222211 345666655433 2899999987765
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00034 Score=71.54 Aligned_cols=159 Identities=9% Similarity=-0.022 Sum_probs=89.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
..++.|+|||+.|.|+ +..++ .|+.++. +|+...... ......+.|++||+ |+.... ....|++++..
T Consensus 47 ~egp~~~~~g~~l~~~-d~~~~---~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~----~~~~v~~~~~~- 115 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWS-DLVGR---RVLGWRE-DGTVDVLLDATAFTNGNAVDAQQR-LVHCEH----GRRAITRSDAD- 115 (305)
T ss_dssp EEEEEEEGGGTEEEEE-ETTTT---EEEEEET-TSCEEEEEESCSCEEEEEECTTSC-EEEEET----TTTEEEEECTT-
T ss_pred ccCCeEeCCCCEEEEE-ECCCC---EEEEEeC-CCCEEEEeCCCCccceeeECCCCC-EEEEEC----CCCEEEEECCC-
Confidence 3467899999998887 44443 4888898 455433222 33456789999998 555432 22478888875
Q ss_pred CCceeEEeeecCCc--eEEEEEEcCCCcEEEEEEcC---------------CCceEEEEEeCCCCCCCeEEeeccCCceE
Q 004866 203 TDEDALLLEESNEN--VYVNIRHTKDFHFVCVHTFS---------------TTSSKVFLINAADPFSGLTLIWECEGLAH 265 (726)
Q Consensus 203 ~~~~~lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~---------------~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 265 (726)
+....+.-...... ..-++.+++||+ |+++... .....||++|.++ ++++.+........
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~p~g 192 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG--SPLQRMADLDHPNG 192 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS--CCCEEEEEESSEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCC--CcEEEEecCCCCcc
Confidence 33222221111111 012467899998 4443210 1136799999876 34444431111223
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
..+++||+.||+........ .+..|++++++
T Consensus 193 l~~spdg~~lyv~~~~~~~~---~~~~i~~~~~~ 223 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGH---GSVEITAFAWR 223 (305)
T ss_dssp EEECTTSSEEEEEECCC------CCCEEEEEEEE
T ss_pred eEEcCCCCEEEEEecCCcCC---CCCEEEEEEec
Confidence 46788999888875432100 12357777664
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00049 Score=73.44 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=76.5
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
...+||||++||... .+| .|.++|+.+++...... ...+..++|+||++.|+....+ ..|+++++.++
T Consensus 102 ~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~ 171 (420)
T 3vl1_A 102 VDTAKLQMRRFILGT-TEG----DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDG 171 (420)
T ss_dssp EEEECSSSCEEEEEE-TTS----CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred EEEEecCCCEEEEEE-CCC----CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCC
Confidence 346899999998875 444 38999999987765432 4567889999999977765432 37889999877
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+... .+.... .....+.|+||+++|+..+.++ .|.++|+.++
T Consensus 172 ~~~~-~~~~h~-~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~ 213 (420)
T 3vl1_A 172 SNPR-TLIGHR-ATVTDIAIIDRGRNVLSASLDG---TIRLWECGTG 213 (420)
T ss_dssp CCCE-EEECCS-SCEEEEEEETTTTEEEEEETTS---CEEEEETTTT
T ss_pred cCce-EEcCCC-CcEEEEEEcCCCCEEEEEcCCC---cEEEeECCCC
Confidence 5322 222222 2234688999999988655433 4778888763
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=85.61 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=66.3
Q ss_pred CccEEEEEcCCCCCC-----C-Cccch----HHHHHHHHCCcEEEEEccCCCCCCCCccc------ccccccCCC-----
Q 004866 493 QNPGLLHGHGAYGEL-----L-DKRWR----SELKSLLDRGWVVAFADVRGGGGGGKKWH------HDGRRTKKL----- 551 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~-----~-~~~~~----~~~~~l~~~G~~v~~~d~RG~g~~g~~~~------~~~~~~~~~----- 551 (726)
..|.||++||..+.. . ...|. .....|.++||.|+.+|+||+|.....-. ..+....+.
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~~ 130 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSEK 130 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhcccccccccccc
Confidence 346688999976531 1 23343 46788889999999999999875311000 000000000
Q ss_pred CcHHHHHHHHHHHHHcCCCC-CCcEEEEEecccHHHHHHHHHc--------------------------CCCceeEEEEe
Q 004866 552 NSIKDFISCARFLIEKEIVK-EHKLAGWGYSAGGLLVAAAINC--------------------------CPDLFRAVVLE 604 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d-~~ri~i~G~S~GG~l~~~~~~~--------------------------~p~~f~a~v~~ 604 (726)
..++++.+.+..++++ .. ..++.|+||||||.++..++.. +|++++.+|+.
T Consensus 131 ~~~~~~a~dl~~ll~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~i 208 (431)
T 2hih_A 131 YGHERYGKTYEGVLKD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITTI 208 (431)
T ss_dssp HTCCSEEEEECCSCTT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEEE
Confidence 0000000000001111 12 3799999999999999988765 68899999988
Q ss_pred CCcc
Q 004866 605 VPFL 608 (726)
Q Consensus 605 ~p~~ 608 (726)
++..
T Consensus 209 ~tP~ 212 (431)
T 2hih_A 209 ATPH 212 (431)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 7643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.011 Score=59.89 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=84.4
Q ss_pred cEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCE
Q 004866 105 EQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQA 180 (726)
Q Consensus 105 ~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~ 180 (726)
++.+||...+..+ | .+..+.|||++ .||.+.| + .|+|||+++|+.+.... ...+..++|+|||+.
T Consensus 13 p~rvldap~~~~d---~-y~~~l~WS~~~-~lAvg~D--~----tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 13 PDRILDAPEIRND---Y-YLNLVDWSSGN-VLAVALD--N----SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp CSEEEECTTCCCC---T-TCBCEEECTTS-EEEEEET--T----EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE
T ss_pred CCEEeeCCCCccc---c-cceEEEECCCC-EEEEEeC--C----EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCE
Confidence 3445675444332 1 23457899997 7887753 3 49999999998765432 224678999999998
Q ss_pred EEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc
Q 004866 181 LIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC 260 (726)
Q Consensus 181 l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 260 (726)
|+-...| ..|.++++.+++. ...+...... . ..++++++.|+..+.. ..+...+..........+...
T Consensus 82 l~sgs~D-----g~v~iw~~~~~~~-~~~~~~h~~~-~--~~~~~~~~~l~s~~~~---~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 82 LAVGTSS-----AEVQLWDVQQQKR-LRNMTSHSAR-V--GSLSWNSYILSSGSRS---GHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp EEEEETT-----SEEEEEETTTTEE-EEEEECCSSC-E--EEEEEETTEEEEEETT---SEEEEEETTSSSCEEEEEECC
T ss_pred EEEEECC-----CcEEEeecCCcee-EEEecCccce-E--EEeecCCCEEEEEecC---CceEeeecCCCceeEEEEcCc
Confidence 8765433 3688888887642 1122222222 1 2456677776544433 234555554432222333333
Q ss_pred CCceE-EeeeecCCEEEEE
Q 004866 261 EGLAH-CIVEHHEGFLYLF 278 (726)
Q Consensus 261 ~~~~~-~~~~~~g~~l~~~ 278 (726)
..... ..+.+++..|+..
T Consensus 150 ~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp SSCEEEEEECTTSSEEEEE
T ss_pred cCceEEEEEcCCCCEEEEE
Confidence 33222 2344566655443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0014 Score=66.85 Aligned_cols=113 Identities=10% Similarity=0.118 Sum_probs=77.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..+.|+|||++|+... .+| .|+++|+.+++...... ...+..+.|+||++.|+....+ ..|.++++.
T Consensus 110 v~~~~~~~~~~~l~s~~-~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~ 179 (312)
T 4ery_A 110 VFCCNFNPQSNLIVSGS-FDE----SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTA 179 (312)
T ss_dssp EEEEEECSSSSEEEEEE-TTS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETT
T ss_pred EEEEEEcCCCCEEEEEe-CCC----cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECC
Confidence 55678999999987764 444 39999999987654322 3456789999999977665433 368888987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+++....+.. ........+.++|||++|+....+ ..|.++|+.++
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~ 224 (312)
T 4ery_A 180 SGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLD---NTLKLWDYSKG 224 (312)
T ss_dssp TCCEEEEECC-SSCCCEEEEEECTTSSEEEEEETT---TEEEEEETTTT
T ss_pred CCceeeEEec-cCCCceEEEEECCCCCEEEEEcCC---CeEEEEECCCC
Confidence 7652222222 222223457899999998876653 46888998773
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0021 Score=64.13 Aligned_cols=197 Identities=9% Similarity=-0.014 Sum_probs=119.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
..++.|+|+++.|.++ +..++ .|++++++++....... ......++++|++..||++.. ....|+++++.
T Consensus 38 ~~gi~~d~~~~~ly~~-d~~~~---~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~----~~~~I~~~~~~ 109 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWT-DISEP---SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS----QLDRIEVAKMD 109 (267)
T ss_dssp EEEEEEETTTTEEEEE-ETTTT---EEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET----TTTEEEEEETT
T ss_pred EEEEEEecCCCEEEEE-ECCCC---EEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC----CCCEEEEEEcC
Confidence 4467899999988665 55443 58999998875433221 134567899999999988743 23479998886
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CC-ceEEeeeecCCEEEEEe
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EG-LAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~-~~~~~~~~~g~~l~~~t 279 (726)
......++ .. ......++.++|++.+|++.........|+.+++++. ..+.+... .. .....++++++.||+..
T Consensus 110 g~~~~~~~-~~-~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 110 GTQRRVLF-DT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp SCSCEEEE-CS-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEE-EC-CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 54332322 21 1122346788999899888765433568999988752 23333321 11 22345677788888765
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
... ..|.+++.+ . .....++.. .....++...+++|++....+ ..|.+++..+
T Consensus 186 ~~~--------~~I~~~~~~-g---~~~~~~~~~--~~~P~gi~~d~~~lyva~~~~--~~v~~~d~~~ 238 (267)
T 1npe_A 186 AGT--------HRAECLNPA-Q---PGRRKVLEG--LQYPFAVTSYGKNLYYTDWKT--NSVIAMDLAI 238 (267)
T ss_dssp TTT--------TEEEEEETT-E---EEEEEEEEC--CCSEEEEEEETTEEEEEETTT--TEEEEEETTT
T ss_pred CCC--------CEEEEEecC-C---CceEEEecC--CCCceEEEEeCCEEEEEECCC--CeEEEEeCCC
Confidence 432 357888876 2 112223321 223456677788888765433 4678888754
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=82.58 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=63.4
Q ss_pred ccEEEEEcCCCCCCCC-----ccch----HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHH-
Q 004866 494 NPGLLHGHGAYGELLD-----KRWR----SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARF- 563 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~-----~~~~----~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~- 563 (726)
.|.||++||..+.... ..|. .....|.++||.|+.+|+||+|.. +. ...++.+.++.
T Consensus 6 ~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G~s---~~----------~a~~l~~~i~~~ 72 (387)
T 2dsn_A 6 DAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSN---WD----------RACEAYAQLVGG 72 (387)
T ss_dssp CCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSBCH---HH----------HHHHHHHHHHCE
T ss_pred CCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCCCc---cc----------cHHHHHHHHHhh
Confidence 3457889997554211 2244 334788899999999999998742 10 01122222211
Q ss_pred -------HHH-----------c----CCCCCCcEEEEEecccHHHHHHHHHc-------------------CC------C
Q 004866 564 -------LIE-----------K----EIVKEHKLAGWGYSAGGLLVAAAINC-------------------CP------D 596 (726)
Q Consensus 564 -------l~~-----------~----~~~d~~ri~i~G~S~GG~l~~~~~~~-------------------~p------~ 596 (726)
+.+ . .....+++.++||||||.++..++.+ +| +
T Consensus 73 ~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~ 152 (387)
T 2dsn_A 73 TVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHH 152 (387)
T ss_dssp EEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCC
T ss_pred hhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCcccccccc
Confidence 110 0 01234799999999999999888862 35 6
Q ss_pred ceeEEEEeCCc
Q 004866 597 LFRAVVLEVPF 607 (726)
Q Consensus 597 ~f~a~v~~~p~ 607 (726)
+++.+|+.++.
T Consensus 153 ~V~sLV~i~tP 163 (387)
T 2dsn_A 153 FVLSVTTIATP 163 (387)
T ss_dssp CEEEEEEESCC
T ss_pred ceeEEEEECCC
Confidence 88888887754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0013 Score=69.71 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=76.6
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..++|||||++||... .+| .|++||+++++.+.... ...+..++|+||++.|+....+ ..|.++++.
T Consensus 126 v~~v~~s~dg~~l~s~~-~d~----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~ 195 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGA-EDR----LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLR 195 (393)
T ss_dssp EEEEEECTTSSEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred EEEEEECCCCCEEEEEc-CCC----eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECC
Confidence 56788999999998774 344 49999999987654322 3456789999999988765433 368888988
Q ss_pred CCCceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 202 STDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+++. ...+...+ ....+.++| ||++|+..+.++ .|.++|+.++
T Consensus 196 ~~~~-~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d~---~v~iwd~~~~ 239 (393)
T 1erj_A 196 TGQC-SLTLSIED--GVTTVAVSPGDGKYIAAGSLDR---AVRVWDSETG 239 (393)
T ss_dssp TTEE-EEEEECSS--CEEEEEECSTTCCEEEEEETTS---CEEEEETTTC
T ss_pred CCee-EEEEEcCC--CcEEEEEECCCCCEEEEEcCCC---cEEEEECCCC
Confidence 7642 22222222 234578898 899887665533 4778888763
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00091 Score=70.48 Aligned_cols=116 Identities=10% Similarity=0.041 Sum_probs=75.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|+... .+| .|+++|+.+........ ...+..++|+||++.++++...+ ..|.++++.+
T Consensus 166 v~~~~~~~~~~~l~~~~-~d~----~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~ 236 (383)
T 3ei3_B 166 YCCVDVSVSRQMLATGD-STG----RLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD----ATVKLWDLRN 236 (383)
T ss_dssp EEEEEEETTTTEEEEEE-TTS----EEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT----SEEEEEEGGG
T ss_pred eEEEEECCCCCEEEEEC-CCC----CEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC----CEEEEEeCCC
Confidence 56778999999998764 444 59999995433222222 34677899999999555554332 3688889876
Q ss_pred CC-ceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeCCCCC
Q 004866 203 TD-EDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADPF 251 (726)
Q Consensus 203 ~~-~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~~~~ 251 (726)
.. ...++...........+.|+| ||++|+..+.+ ..|.++|+.++.
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d---~~i~iwd~~~~~ 284 (383)
T 3ei3_B 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR---NEIRVYSSYDWS 284 (383)
T ss_dssp CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS---SEEEEEETTBTT
T ss_pred CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC---CcEEEEECCCCc
Confidence 43 122222112223345689999 99998866643 468899987743
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0023 Score=68.68 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=66.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce-----------ec-ccc-c------------cccceeEEecC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL-----------CS-KPQ-A------------VRVSNIAWAKD 177 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~-----------~~-~~~-~------------~~~~~~~WspD 177 (726)
.+..++|||||++||... .+| .|.|+|+.+++. .. ... . ..+..+.|+|+
T Consensus 30 ~V~~v~~s~~g~~la~g~-~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGD-KGG----RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp SEEEEEECSSSSEEEEEE-TTS----EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cEEEEEECCCCCEEEEEc-CCC----eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 466778999999998874 444 499999988762 11 111 1 44678999999
Q ss_pred C--CEEEEEEecCCCCCceEEEEEcCCCCce--------------------------------------eEEeeecCCce
Q 004866 178 G--QALIYVVTDQNKRPYQIYCSIIGSTDED--------------------------------------ALLLEESNENV 217 (726)
Q Consensus 178 g--~~l~y~~~~~~~~~~~l~~~~l~t~~~~--------------------------------------~lv~~~~d~~~ 217 (726)
+ ..|+....+. .|.++++.++... ..++.......
T Consensus 105 ~~~~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 105 KNAAQFLLSTNDK-----TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp CSSSEEEEEECSS-----CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred CCcceEEEeCCCC-----eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 8 5666554332 3555554331100 00111111112
Q ss_pred EEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 218 YVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 218 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
...+.|+|||++|+.. . ...|.++|+..
T Consensus 180 v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~ 207 (447)
T 3dw8_B 180 INSISINSDYETYLSA-D---DLRINLWHLEI 207 (447)
T ss_dssp CCEEEECTTSSEEEEE-C---SSEEEEEETTE
T ss_pred eEEEEEcCCCCEEEEe-C---CCeEEEEECCC
Confidence 2367899999988753 2 45788888874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00093 Score=69.71 Aligned_cols=144 Identities=10% Similarity=0.038 Sum_probs=85.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc--eecc-cc-ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LCSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~--~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++||... .+| .|+++|+.+++ .... .. ...+..++|+||++.|+....+ ..|.++
T Consensus 10 ~i~~~~~s~~~~~l~~~~-~d~----~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw 79 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICP-NNH----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVW 79 (372)
T ss_dssp CCCEEEECTTSSEEEEEC-SSS----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred CeEEEEECCCCCEEEEEe-CCC----EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEE
Confidence 356678999999998873 333 59999999986 3322 11 3456789999999988776432 357777
Q ss_pred EcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC--eEEeecc-CCce-EEeeeecCC
Q 004866 199 IIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG--LTLIWEC-EGLA-HCIVEHHEG 273 (726)
Q Consensus 199 ~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~--~~~l~~~-~~~~-~~~~~~~g~ 273 (726)
++.+++ ......... ......+.|+||+++|+.....+ .+.++|+...... ...+... ...+ ...+++++.
T Consensus 80 d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EEETTEEEEEEECCCC-SSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred ECCCCeeeeeEEeecC-CCceeEEEECCCCCEEEEEeCCC---EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 876654 222222222 22234688999999988766532 3556665553211 1222222 2222 234567777
Q ss_pred EEEEEec
Q 004866 274 FLYLFTD 280 (726)
Q Consensus 274 ~l~~~t~ 280 (726)
.|+..+.
T Consensus 156 ~l~~~~~ 162 (372)
T 1k8k_C 156 LLAAGSC 162 (372)
T ss_dssp EEEEEET
T ss_pred EEEEEcC
Confidence 6665543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.014 Score=60.68 Aligned_cols=195 Identities=9% Similarity=-0.082 Sum_probs=108.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||-.. .+| .|.|||..+++...... ...+..++|+|||+.|+.... ...+.++++
T Consensus 66 ~V~~~~~s~d~~~l~s~s-~Dg----~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-----d~~i~v~~~ 135 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSS-QDG----KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-----DNKCSVYPL 135 (354)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-----TSEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEe-CCC----eEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-----CCCEEEEEE
Confidence 466778999999987664 445 59999999887654322 235678999999998876532 235666666
Q ss_pred CCCC-----ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-Eeeee--cC
Q 004866 201 GSTD-----EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEH--HE 272 (726)
Q Consensus 201 ~t~~-----~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~--~g 272 (726)
.... .....+... ......+.|+|+++.|+..+.+ ..|.++|+.++. ....+......+. ..+.+ +|
T Consensus 136 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~D---~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMH-TNYLSACSFTNSDMQILTASGD---GTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp CCCTTCCSGGGCEEEEEC-SSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSC
T ss_pred eccccccccccceeeecc-CCcEEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCC
Confidence 4321 111112211 2233467899999998765543 468888988742 2233333333322 23333 34
Q ss_pred CEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 273 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 273 ~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
..|+..+ .++ .|...|+. . ......+. .....+..+.+.. +.++++...+|. ++++|+..
T Consensus 211 ~~l~sgs-~Dg--------~v~~wd~~-~---~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~--v~lwd~~~ 271 (354)
T 2pbi_B 211 NTFVSGG-CDK--------KAMVWDMR-S---GQCVQAFE-THESDVNSVRYYPSGDAFASGSDDAT--CRLYDLRA 271 (354)
T ss_dssp CEEEEEE-TTS--------CEEEEETT-T---CCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT
T ss_pred CEEEEEe-CCC--------eEEEEECC-C---CcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCe--EEEEECCC
Confidence 4444433 222 24555554 2 22222222 2233455666543 455666666664 45566643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0016 Score=68.62 Aligned_cols=145 Identities=8% Similarity=-0.073 Sum_probs=86.3
Q ss_pred EeeceeeC----CCCCE-EEEEEeCCCCcEEEEEEEECCC------Cceec-----cc---------cccccceeEEecC
Q 004866 123 YEELSEVS----PDHKF-LAYTMYDKDNDYFTLSVRNLNS------GALCS-----KP---------QAVRVSNIAWAKD 177 (726)
Q Consensus 123 ~~~~~~~S----PDG~~-la~~~~~~g~e~~~l~v~dl~t------g~~~~-----~~---------~~~~~~~~~WspD 177 (726)
.+..+.|+ |||++ |+... .+| .|+++|+.+ ++.+. .. ....+..++|+||
T Consensus 123 ~v~~~~~~~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 197 (397)
T 1sq9_A 123 SFWALKWGASNDRLLSHRLVATD-VKG----TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 197 (397)
T ss_dssp CEEEEEEECCC----CEEEEEEE-TTS----CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT
T ss_pred cEEEEEEeeccCCCCceEEEEEe-CCC----cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC
Confidence 46677899 99999 76654 455 389999988 54433 11 1334678999999
Q ss_pred CCEEEEEEecCCCCCceEEEEEcCCCCceeEEeee---c--CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCC
Q 004866 178 GQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEE---S--NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS 252 (726)
Q Consensus 178 g~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~---~--d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~ 252 (726)
+ .|+.. . ....|+++++.+... ...+.. . .......+.|+||+++|+..........|.++|+.++.
T Consensus 198 ~-~l~~~-~----~dg~i~i~d~~~~~~-~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~- 269 (397)
T 1sq9_A 198 G-LIATG-F----NNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE- 269 (397)
T ss_dssp S-EEEEE-C----TTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-
T ss_pred c-eEEEE-e----CCCcEEEEECCCCce-eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-
Confidence 9 55444 2 234788999877542 222222 1 02233568899999999877664333689999998742
Q ss_pred CeEEeec-------------cCCce-EEeeeecCCEEEEEec
Q 004866 253 GLTLIWE-------------CEGLA-HCIVEHHEGFLYLFTD 280 (726)
Q Consensus 253 ~~~~l~~-------------~~~~~-~~~~~~~g~~l~~~t~ 280 (726)
....+.. ....+ ...+++++..|+..+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 2233332 22222 3355677877665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00065 Score=79.54 Aligned_cols=195 Identities=8% Similarity=-0.054 Sum_probs=112.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|||||++||.+.+ +| .|.|+|+.+|+...... ...+..++|+||++.|+....+ ..|.++++
T Consensus 57 ~v~~~~~s~~~~~l~~~~~-dg----~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~ 126 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD-DF----RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNW 126 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET-TS----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEG
T ss_pred cEEEEEEeCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCC-----CEEEEEEC
Confidence 4667889999999998853 44 59999999998665322 3457789999999988765422 36888888
Q ss_pred CCCCceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-Cc-eEEeeee--cCCEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GL-AHCIVEH--HEGFL 275 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~-~~~~~~~--~g~~l 275 (726)
.++......+.... .....+.|+| |++.|+..+.+ ..|+++|+.++... ..+.... .. ....+++ ++..+
T Consensus 127 ~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d---g~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 127 ENNWALEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD---RTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp GGTSEEEEEEECCS-SCEEEEEEETTEEEEEEEEETT---SEEEEEETTCSSCS-EEEECCCTTCCCEEEECCSTTCCEE
T ss_pred CCCceEEEEEcCCC-CcEEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcce-eEEecCCCCCEEEEEEEECCCCCEE
Confidence 76532222332222 2345688999 78777765543 36888898764332 2332222 22 2334455 66655
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+..+. + ..|..++.. . ......+.. ....+..+.+.. +.++++...+|. |+++++.+
T Consensus 202 ~~~~~-d--------g~i~~~d~~-~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~--v~vwd~~~ 259 (814)
T 3mkq_A 202 ITASD-D--------LTIKIWDYQ-T---KSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGT--LKIWNSST 259 (814)
T ss_dssp EEECT-T--------SEEEEEETT-T---TEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSC--EEEEETTT
T ss_pred EEEeC-C--------CEEEEEECC-C---CcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCe--EEEEECCC
Confidence 55443 2 124445544 1 111112222 223455555543 335555555664 45566654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0014 Score=68.31 Aligned_cols=199 Identities=11% Similarity=0.009 Sum_probs=110.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC--ceecccc--ccccceeEEecC--CCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG--ALCSKPQ--AVRVSNIAWAKD--GQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg--~~~~~~~--~~~~~~~~WspD--g~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++||.+. .+| .|+|||+.++ +...... ...+..++|+|+ ++.|+....+ ..|.
T Consensus 13 ~v~~~~~s~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCS-SDK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVL 82 (379)
T ss_dssp CEEEEEECSSSSEEEEEE-TTS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEE
T ss_pred cEEEEEEcCCCCEEEEEE-CCC----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEE
Confidence 466788999999998874 445 3889998744 3322211 345678999987 7777665432 3577
Q ss_pred EEEcCCCC-ceeEEeeecCCceEEEEEEcCC--CcEEEEEEcCCCceEEEEEeCCCCCCCe-EEeeccCCce-EEeeee-
Q 004866 197 CSIIGSTD-EDALLLEESNENVYVNIRHTKD--FHFVCVHTFSTTSSKVFLINAADPFSGL-TLIWECEGLA-HCIVEH- 270 (726)
Q Consensus 197 ~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~-~~~~~~- 270 (726)
++++.++. .....+.... .....+.|+|+ +++|+....+ ..|.++|+.+..... ..+......+ ...+++
T Consensus 83 iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT---SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEcCCCceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecCC---CcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 77877654 1222222222 23356889999 8888776653 368888887643222 2232222222 233445
Q ss_pred ------------cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEe-ecCCCceEEEEeeeC----CEEEEEE
Q 004866 271 ------------HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVF-IDDQGLVVEDVDFCK----THMALIL 333 (726)
Q Consensus 271 ------------~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~~~~l~~~~~~~----~~lv~~~ 333 (726)
++..|+..+..+ ..+++.+... ...+..+. .......+..+.+.. ..++++.
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~----~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADN-------LVKIWKYNSD----AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp C----------CTTCEEEEEETTS-------CEEEEEEETT----TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCC-------eEEEEEecCC----CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 456555544322 2445544322 12222111 112233455665554 4677777
Q ss_pred EeCCeeEEEEEecCC
Q 004866 334 REGRTYRLCSVSLPL 348 (726)
Q Consensus 334 ~~~g~~~l~~~~l~~ 348 (726)
..+|.-.+ +++..
T Consensus 228 ~~dg~i~i--wd~~~ 240 (379)
T 3jrp_A 228 SQDRTCII--WTQDN 240 (379)
T ss_dssp ETTSCEEE--EEESS
T ss_pred eCCCEEEE--EeCCC
Confidence 77776544 55543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0019 Score=67.09 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=89.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc---c-ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP---Q-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~---~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++||... .+| .+.++|+.++...... . ...+..++|+|||+.|+-...| ..|+++
T Consensus 63 ~v~~~~~sp~g~~l~s~s-~D~----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iw 132 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASAS-FDA----TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVW 132 (345)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEE
T ss_pred cEEEEEECCCCCEEEEEE-CCC----cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEEE
Confidence 467789999999998775 444 3889998877532211 1 3456789999999988766433 257778
Q ss_pred EcCCCCceeE--EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC-eEEeeccCCce-EEeeeecCCE
Q 004866 199 IIGSTDEDAL--LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG-LTLIWECEGLA-HCIVEHHEGF 274 (726)
Q Consensus 199 ~l~t~~~~~l--v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~-~~~l~~~~~~~-~~~~~~~g~~ 274 (726)
++.++..... ++... ......+.|+||+++|+..+.++ .|.++|+.++... ...+......+ ...++++|..
T Consensus 133 d~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~---~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~ 208 (345)
T 3fm0_A 133 EVDEEDEYECVSVLNSH-TQDVKHVVWHPSQELLASASYDD---TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208 (345)
T ss_dssp EECTTSCEEEEEEECCC-CSCEEEEEECSSSSCEEEEETTS---CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ECCCCCCeEEEEEecCc-CCCeEEEEECCCCCEEEEEeCCC---cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE
Confidence 8866542222 22221 12234688999999887665543 3555565542111 11222222222 2356788887
Q ss_pred EEEEecCcccCCCCCCeEEEEee
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCP 297 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~ 297 (726)
|+..+... ..+|+...
T Consensus 209 l~s~s~D~-------~v~iW~~~ 224 (345)
T 3fm0_A 209 LASCSDDR-------TVRIWRQY 224 (345)
T ss_dssp EEEEETTS-------CEEEEEEE
T ss_pred EEEEeCCC-------eEEEeccc
Confidence 66554322 35666553
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0035 Score=66.45 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=69.2
Q ss_pred EeeceeeCCCCC-EEEEEEeCCCCcEEEEEEEEC----CCCce------ec-ccc-----------ccccceeEEecCCC
Q 004866 123 YEELSEVSPDHK-FLAYTMYDKDNDYFTLSVRNL----NSGAL------CS-KPQ-----------AVRVSNIAWAKDGQ 179 (726)
Q Consensus 123 ~~~~~~~SPDG~-~la~~~~~~g~e~~~l~v~dl----~tg~~------~~-~~~-----------~~~~~~~~WspDg~ 179 (726)
.+..++|||||+ +||... .+| .|.++|+ .+++. .. +.. ...+..++|+|||+
T Consensus 47 ~v~~~~~s~~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGE-KNS----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp CCSEEEECSSCTTEEEEEE-TBT----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred ceEEEEECCCCCcEEEEec-CCc----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 466778999999 888764 344 5899999 88872 21 111 12567889999999
Q ss_pred EEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 180 ALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 180 ~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.|+....+ ..|++++. ++. ....+.... .....+.|+||+++|+..... ..+.++|+.++
T Consensus 122 ~l~~~~~d-----g~i~i~~~-~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~ 181 (425)
T 1r5m_A 122 SIVTGVEN-----GELRLWNK-TGA-LLNVLNFHR-APIVSVKWNKDGTHIISMDVE---NVTILWNVISG 181 (425)
T ss_dssp EEEEEETT-----SCEEEEET-TSC-EEEEECCCC-SCEEEEEECTTSSEEEEEETT---CCEEEEETTTT
T ss_pred EEEEEeCC-----CeEEEEeC-CCC-eeeeccCCC-ccEEEEEECCCCCEEEEEecC---CeEEEEECCCC
Confidence 88876433 25777773 222 222222222 223468899999998876653 35788888763
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00079 Score=73.78 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=70.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc------ccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV------RVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~------~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++||.+. .+|. +.+||.++ .+...... .+..++|||||+.|+....| ..|.
T Consensus 87 ~V~~vawSPdG~~LAs~s-~dg~----V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D-----GtVk 154 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLS-NNGN----VSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED-----GELQ 154 (588)
T ss_dssp CEEEEEECSSSSCEEEEE-TTSC----EEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT-----SEEE
T ss_pred cEEEEEECCCCCEEEEEe-CCCc----EEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC-----CEEE
Confidence 467789999999999875 4553 88999544 21111111 36689999999988877433 3688
Q ss_pred EEEcCCCCc-e-----eEEee---ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 197 CSIIGSTDE-D-----ALLLE---ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 197 ~~~l~t~~~-~-----~lv~~---~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
++++.++.. . ...+. .........++||||| |+..+. .+.++++|+.+.
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---D~tVrlWd~~~~ 212 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---NNSVFSMTVSAS 212 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET---TCCEEEECCCSS
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC---CCeEEEEECCCC
Confidence 888876531 1 11221 1112345678999999 444333 345788888774
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0016 Score=68.19 Aligned_cols=114 Identities=12% Similarity=-0.056 Sum_probs=70.9
Q ss_pred CCCEEEEEEeCCCCcEE-EEEEEECCCCceeccccccccceeEEecCCCEEEEEEec--C---CCCCceEEEEEcCCCC-
Q 004866 132 DHKFLAYTMYDKDNDYF-TLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTD--Q---NKRPYQIYCSIIGSTD- 204 (726)
Q Consensus 132 DG~~la~~~~~~g~e~~-~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~--~---~~~~~~l~~~~l~t~~- 204 (726)
+..+ +|+.+..++.-. ++.|+|+++++.+.....+....+..||||+.+|.+... + ..+...|..+|+.+.+
T Consensus 30 ~~~~-~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 30 ISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp CTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CCCe-EEEECCccCCccceEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 4444 677776554111 799999999988764433333379999999999887532 1 1134579999998876
Q ss_pred ceeEEee-ec-----CCceEEEEEEcCCCcEEEEEEcCCCceEEEE--EeCCC
Q 004866 205 EDALLLE-ES-----NENVYVNIRHTKDFHFVCVHTFSTTSSKVFL--INAAD 249 (726)
Q Consensus 205 ~~~lv~~-~~-----d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~--~d~~~ 249 (726)
...+... .. ..+. .+.+||||++|++.... ..+.+.+ +|+.+
T Consensus 109 v~~I~v~~~~~~~~g~~P~--~ia~SpDGk~lyVan~~-~~~~v~V~~iD~~t 158 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVH--IIGNCASSACLLFFLFG-SSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEETTSCSCCBSCCTT--SEEECTTSSCEEEEECS-SSCEEEEEETTTEE
T ss_pred EEEEECCCccccccCCCcc--eEEEcCCCCEEEEEccC-CCCeEEEEEEchhh
Confidence 3332221 00 1122 36789999999887532 2334555 66644
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0012 Score=68.91 Aligned_cols=113 Identities=8% Similarity=0.034 Sum_probs=73.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc---c-ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP---Q-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~---~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..+.|||||++|+... .+| .|+++|+.+++..... . ...+..+.|+||++.|+....+ ..|+++
T Consensus 54 ~v~~~~~~~~~~~l~~~~-~dg----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~ 123 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCG-TDR----NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISIC 123 (372)
T ss_dssp CEEEEEEETTTTEEEEEE-TTS----CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEE
T ss_pred cccEEEEeCCCCEEEEEc-CCC----eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEEEE
Confidence 466788999999998774 444 3899999988743321 1 3456789999999988776433 246666
Q ss_pred EcCCCCcee--EEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC
Q 004866 199 IIGSTDEDA--LLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 248 (726)
Q Consensus 199 ~l~t~~~~~--lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 248 (726)
++.+..... .............+.|+||+++|+....+ ..++++|+.
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~~d~~ 172 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---FKCRIFSAY 172 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---SCEEEEECC
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---CCEEEEEcc
Confidence 665544211 11111212234568899999998776543 357777853
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0036 Score=65.16 Aligned_cols=199 Identities=7% Similarity=0.023 Sum_probs=110.1
Q ss_pred EeeceeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceecc--cc--ccccceeEEecC--CCEEEEEEecCCCCCce
Q 004866 123 YEELSEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSK--PQ--AVRVSNIAWAKD--GQALIYVVTDQNKRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~--~~--~~~~~~~~WspD--g~~l~y~~~~~~~~~~~ 194 (726)
.+..++|||+ |++|+... .+| .|++||+.+++.... .. ...+..+.|+|+ ++.|+....+ ..
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~-~dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~ 126 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCS-YDG----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GK 126 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEE-TTS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SE
T ss_pred cEEEEEeCCCCCCCEEEEec-cCC----EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-----Cc
Confidence 4667789988 89887764 455 399999999863221 11 345678999999 8877776432 37
Q ss_pred EEEEEcCCCC-ceeEEeeecCCceEEEEEEcC-------------CCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee--
Q 004866 195 IYCSIIGSTD-EDALLLEESNENVYVNIRHTK-------------DFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW-- 258 (726)
Q Consensus 195 l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~-------------Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~-- 258 (726)
|.++++.+.. .....+.... .....+.|+| |+++|+..+.++ .|+++|+.++......+.
T Consensus 127 i~v~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~ 202 (379)
T 3jrp_A 127 VSVVEFKENGTTSPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTL 202 (379)
T ss_dssp EEEEECCTTSCCCEEEEECCT-TCEEEEEECCCC----------CTTCEEEEEETTS---CEEEEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCCceeeEEecCCC-CceEEEEEcCccccccccccCCCCCCEEEEEeCCC---eEEEEEecCCCcceeeEEEE
Confidence 8888887764 2233332222 2234678899 688887666543 477777765432222221
Q ss_pred -ccCCce-EEeeeecC--CEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE-Eeec-CCCceEEEEeeeC-CEEEE
Q 004866 259 -ECEGLA-HCIVEHHE--GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES-VFID-DQGLVVEDVDFCK-THMAL 331 (726)
Q Consensus 259 -~~~~~~-~~~~~~~g--~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-v~~~-~~~~~l~~~~~~~-~~lv~ 331 (726)
.....+ ...+++++ +.+++....++ ..+|+.+... ...+.. +... .....+..+.+.. +.+++
T Consensus 203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~dg------~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDR------TCIIWTQDNE----QGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEETTS------CEEEEEESST----TSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred ecccCcEeEEEECCCCCCCCeEEEEeCCC------EEEEEeCCCC----CccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence 122222 33566773 44444444332 2455554332 112221 2111 1233455555543 33445
Q ss_pred EEEeCCeeEEEEEe
Q 004866 332 ILREGRTYRLCSVS 345 (726)
Q Consensus 332 ~~~~~g~~~l~~~~ 345 (726)
+...+|.-.++.++
T Consensus 273 ~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 273 LSGGDNKVTLWKEN 286 (379)
T ss_dssp EEESSSSEEEEEEE
T ss_pred EecCCCcEEEEeCC
Confidence 55567766665554
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00065 Score=70.55 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=88.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|+|||++|+-.. .+| .|.+||+.+++...... ...+..++|+||++.|+-...+ ..|.++++
T Consensus 186 ~v~~~~~~~~~~~l~sg~-~d~----~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~ 255 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGA-CDA----SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDL 255 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred ceEEEEECCCCCEEEEEe-CCC----cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC-----CcEEEEEC
Confidence 355678999999887664 444 39999999987654322 3456789999999988765433 36888888
Q ss_pred CCCCceeEEeeecCC-ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEE
Q 004866 201 GSTDEDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLF 278 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~ 278 (726)
.+++. ...+..... .....+.|+|||++|+....+ ..|.++|+.++. ....+......+. ..++++|..|+-.
T Consensus 256 ~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 256 RADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGYDD---FNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp TTTEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred CCCcE-EEEEccCCcccceEEEEECCCCCEEEEECCC---CeEEEEEcccCc-EeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence 76532 222322211 123468899999998876543 468888987632 2233333333322 2455666655443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0026 Score=68.44 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=115.6
Q ss_pred eeceeeCCCCC-EEEEEEeCCCCcEEEEEEEECCCCceec--------ccc-ccccceeEEecCCCEEEEEEecCCCCCc
Q 004866 124 EELSEVSPDHK-FLAYTMYDKDNDYFTLSVRNLNSGALCS--------KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 124 ~~~~~~SPDG~-~la~~~~~~g~e~~~l~v~dl~tg~~~~--------~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
+..+.|+|+++ +|+.. ..+| .|+++|+.++.... ... ...+..++|+|++..++++.... .
T Consensus 184 v~~l~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d----g 254 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSA-SDDH----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD----Q 254 (430)
T ss_dssp CCCEEECTTSTTEEEEE-CTTS----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT----S
T ss_pred eEEEEeCCCCCCeEEEE-eCCC----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC----C
Confidence 45678999999 66554 4555 39999998853211 111 23467799999666666664432 3
Q ss_pred eEEEEEcCCCC--ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeee
Q 004866 194 QIYCSIIGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEH 270 (726)
Q Consensus 194 ~l~~~~l~t~~--~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~ 270 (726)
.|+++++.+.. .....+..... ....+.|+|++++++++.... ..|.++|+.........+......+ ...+++
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~tg~~d--g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTA-EVNCLSFNPYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSS-CEEEEEECSSCTTEEEEEETT--SEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred eEEEEECCCCCCCcceeEeecCCC-CeEEEEeCCCCCCEEEEEeCC--CeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 78999998763 22222222222 234688999999766555433 3588889876433444444333332 345678
Q ss_pred cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCC-------CCceEEeec-CCCceEEEEeeeC--CEEEEEEEeCCeeE
Q 004866 271 HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPS-------RTWESVFID-DQGLVVEDVDFCK--THMALILREGRTYR 340 (726)
Q Consensus 271 ~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~v~~~-~~~~~l~~~~~~~--~~lv~~~~~~g~~~ 340 (726)
+++.+++....++ ...|+.+... .... ...+.+... .....+..+.+.. ..++++...+|.-+
T Consensus 332 ~~~~~l~s~~~d~------~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 332 HNETILASSGTDR------RLHVWDLSKI-GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp SCTTEEEEEETTS------CCEEEEGGGT-TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCEEEEEeCCC------cEEEEeCCCC-ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence 8876666655443 2455554431 1000 001222222 2234466777664 44788888887666
Q ss_pred EEEEe
Q 004866 341 LCSVS 345 (726)
Q Consensus 341 l~~~~ 345 (726)
++.++
T Consensus 405 iw~~~ 409 (430)
T 2xyi_A 405 VWQMA 409 (430)
T ss_dssp EEEEC
T ss_pred EeEcc
Confidence 66553
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0037 Score=66.73 Aligned_cols=141 Identities=7% Similarity=0.051 Sum_probs=87.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|||||++|+-+. .+| .|.|||+.+|+...... ...+..++|+|||+.|+-...| ..|.++++
T Consensus 110 ~V~~~~~~p~~~~l~s~s-~Dg----~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-----~~i~iwd~ 179 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSAS-EDA----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-----MTIKLWDF 179 (410)
T ss_dssp CEEEEEECSSSSEEEEEE-SSS----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT-----SCCCEEET
T ss_pred cEEEEEEcCCCCEEEEEe-CCC----eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeC
Confidence 466778999999987764 445 39999999997654322 3456789999999977665433 24666777
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t 279 (726)
.+.+. ...+.... .....+.|+|||++|+..+.+ ..|.++|+.++. ....+......+. ..++++|..|+..+
T Consensus 180 ~~~~~-~~~~~~h~-~~V~~v~~~p~~~~l~s~s~D---~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 180 QGFEC-IRTMHGHD-HNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp TSSCE-EECCCCCS-SCEEEEEECSSSSEEEEEETT---SEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCce-eEEEcCCC-CCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 65531 11222222 223468899999998765543 468888988742 2333333333222 23456666555443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0019 Score=66.86 Aligned_cols=198 Identities=7% Similarity=-0.107 Sum_probs=109.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecC---CCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKD---GQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspD---g~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||+.++.+.... .+...|+++|+.+++...... ...+..+.|+|| |+.|+....+ ..|.
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~ 93 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG-----GNLH 93 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT-----SCEE
T ss_pred ceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC-----CeEE
Confidence 467789999998887665331 112469999999987654322 346678999999 5767665322 3688
Q ss_pred EEEcCCCCceeEEeeecCCceEEEE------EEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC----ceEE
Q 004866 197 CSIIGSTDEDALLLEESNENVYVNI------RHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG----LAHC 266 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~~~~~~~------~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~----~~~~ 266 (726)
++++.++......+...... ...+ .++||+++|+..+.+ ..|.++|+.++......+..... .+..
T Consensus 94 iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~s~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEI-INAIDGIGGLGIGEGAPEIVTGSRD---GTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp EECTTSCSSCSEEECCCSSC-EEEEEEESGGGCC-CCCEEEEEETT---SCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred EEeCCCCCccEEEEEecccc-eEEEeeccccccCCCccEEEEEeCC---CeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 88887765222233322222 2233 468999998766553 35888898875433444433222 1111
Q ss_pred -e----eeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee----CCEEEEEEEeCC
Q 004866 267 -I----VEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC----KTHMALILREGR 337 (726)
Q Consensus 267 -~----~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~----~~~lv~~~~~~g 337 (726)
. +++++..|+..+.. ..|..+++. . ......... ...+..+.+. .+..+++...+|
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~-~---~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDN---------GDIKLFDLR-N---MALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EEEECCCC-CCCEEEEEETT---------SEEEEEETT-T---TEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred EEEEeccCCCCCEEEEEccC---------CeEEEEECc-c---CceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 1 34677766655432 235555654 2 111222222 2345555554 345555666666
Q ss_pred eeEEEEEecC
Q 004866 338 TYRLCSVSLP 347 (726)
Q Consensus 338 ~~~l~~~~l~ 347 (726)
. +.++++.
T Consensus 235 ~--i~i~d~~ 242 (357)
T 3i2n_A 235 K--FHVFDMR 242 (357)
T ss_dssp E--EEEEEEE
T ss_pred e--EEEEeCc
Confidence 4 4445543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0024 Score=71.24 Aligned_cols=194 Identities=6% Similarity=-0.055 Sum_probs=107.6
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC--CCC
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG--STD 204 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~--t~~ 204 (726)
.|+.|...++|+.....+ .|.++|+++++.+.... ......+.+||||+++|... . ...|..+|+. +.+
T Consensus 160 ~~~~d~~~~~~V~~~~~~---~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~----dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 160 MNDWDLENLFSVTLRDAG---QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-R----DGKVNMIDLWMKEPT 231 (567)
T ss_dssp CSCCCGGGEEEEEETTTT---EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-T----TSEEEEEETTSSSCC
T ss_pred ccccCCCceEEEEeCCCC---eEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-C----CCeEEEEECCCCCCc
Confidence 467776666777665443 59999999998775332 22445789999999988763 2 3479999995 443
Q ss_pred ceeEEeeecCCceEEEEEEc----CCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC---C--------c-eEEee
Q 004866 205 EDALLLEESNENVYVNIRHT----KDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE---G--------L-AHCIV 268 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s----~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~---~--------~-~~~~~ 268 (726)
. +.+-.-...-.++.+| |||+++++..... +.+.++|..+.+ ..+.+.-+. + . .....
T Consensus 232 ~---v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~--~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 232 T---VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP--PQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp E---EEEEECCSEEEEEEECCSTTCTTTEEEEEEEET--TEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred E---eEEEecCCCCceeEEccccCCCCCEEEEEEccC--CeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEE
Confidence 1 1111112222467889 6999998876532 457788987732 222232111 1 1 12234
Q ss_pred eecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEee--eCCEEEEEEEeCCeeEEEEEec
Q 004866 269 EHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDF--CKTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 269 ~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~~l 346 (726)
++++..+++.. ... .+|..++.. ... ...+..-.....+.++.+ .++++++..+ +...|.++|+
T Consensus 306 s~~~~~~vv~~-~~~-------g~v~~vd~~-~~~---~~~v~~i~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~ 371 (567)
T 1qks_A 306 SHYRPEFIVNV-KET-------GKILLVDYT-DLN---NLKTTEISAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDT 371 (567)
T ss_dssp CSSSSEEEEEE-TTT-------TEEEEEETT-CSS---EEEEEEEECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEET
T ss_pred cCCCCEEEEEe-cCC-------CeEEEEecC-CCc---cceeeeeeccccccCceECCCCCEEEEEeC--CCCeEEEEEC
Confidence 56666655543 221 347777765 211 111111111223344444 4455555443 4557888887
Q ss_pred CCC
Q 004866 347 PLP 349 (726)
Q Consensus 347 ~~~ 349 (726)
.++
T Consensus 372 ~t~ 374 (567)
T 1qks_A 372 KEG 374 (567)
T ss_dssp TTT
T ss_pred CCC
Confidence 653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.011 Score=62.70 Aligned_cols=238 Identities=10% Similarity=0.030 Sum_probs=128.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
+..+.||+ +..++.+ .+| .|++||+++|+...... ...+..++|+|||+.|+....+ ..|.++++
T Consensus 96 ~~~~~~s~-~~l~~~~--~d~----~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVA--LER----NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDV 163 (401)
T ss_dssp CBCEEECT-TSEEEEE--ETT----EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred EEEEeecC-CCEEEEE--CCC----eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-----CeEEEEEC
Confidence 44566776 3344433 234 49999999998765432 3356789999999988776533 36888898
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t 279 (726)
.+++... .+...... ...+.| +++.|+..+.+ ..|.++|+.........+......+ ...+++++..|+..+
T Consensus 164 ~~~~~~~-~~~~~~~~-v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 164 ESQTKLR-TMAGHQAR-VGCLSW--NRHVLSSGSRS---GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp TTCCEEE-EECCCSSC-EEEEEE--ETTEEEEEETT---SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCeEEE-EecCCCCc-eEEEEE--CCCEEEEEcCC---CCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 7765222 22222222 234566 56776655443 4688889875333344444333333 234667777766655
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEE--eCCeeEEEEEecCCCCCCcce
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILR--EGRTYRLCSVSLPLPAGKGVV 355 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~~l~~~~~~~~~ 355 (726)
..+ .|..+++. . ......+. .....+..+.+. ++.++++.. .+| .|.++|+.++.
T Consensus 237 ~d~---------~v~iwd~~-~---~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~--~i~i~d~~~~~----- 295 (401)
T 4aez_A 237 NDN---------VVQIWDAR-S---SIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDK--QIHFWNAATGA----- 295 (401)
T ss_dssp TTS---------CEEEEETT-C---SSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTC--EEEEEETTTCC-----
T ss_pred CCC---------eEEEccCC-C---CCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCC--EEEEEECCCCC-----
Confidence 422 24455554 2 11111121 122334444444 456666654 344 57777876532
Q ss_pred eecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEE
Q 004866 356 HLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNI 412 (726)
Q Consensus 356 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~ 412 (726)
.+ ..+.....+..+ .+++++..++....+ .-+.+..+|+.+++...
T Consensus 296 ~~-----~~~~~~~~v~~~----~~s~~~~~l~~~~g~--~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 296 RV-----NTVDAGSQVTSL----IWSPHSKEIMSTHGF--PDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp EE-----EEEECSSCEEEE----EECSSSSEEEEEECT--TTCEEEEEEEETTEEEE
T ss_pred EE-----EEEeCCCcEEEE----EECCCCCeEEEEeec--CCCcEEEEecCCcccee
Confidence 11 122233333333 234566665543322 23578888887765544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0014 Score=73.22 Aligned_cols=138 Identities=15% Similarity=0.062 Sum_probs=84.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc-cc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||... .++ .|+++|.. ++.+.. .. ...+..++|+||++.|+....+ ..|.++++
T Consensus 387 ~v~~~~~s~dg~~l~~~~-~d~----~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-----~~v~~w~~ 455 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASAS-DDK----TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD-----KTVKLWNR 455 (577)
T ss_dssp CEEEEEECTTSSCEEEEE-TTS----EEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred CeEEEEECCCCCEEEEEe-CCC----EEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCC-----CEEEEEEC
Confidence 356678999999998764 333 48899964 443332 11 3456779999999988776432 35777776
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t 279 (726)
..... ..+..... ....+.+||||++|+..+.+ ..|.++|..+ ...+.+......+ ...++++|+.|+..+
T Consensus 456 ~~~~~--~~~~~~~~-~v~~~~~spd~~~las~~~d---~~i~iw~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 456 NGQLL--QTLTGHSS-SVRGVAFSPDGQTIASASDD---KTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp TSCEE--EEEECCSS-CEEEEEECTTSCEEEEEETT---SEEEEEETTS--CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CCCEE--EEEcCCCC-CEEEEEEcCCCCEEEEEeCC---CEEEEEcCCC--CEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 43211 12222222 23467899999998866543 3577788644 3344444433333 235678888766544
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=97.82 E-value=2.4e-05 Score=81.29 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHHcCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCA-RFLIEKEIVK 571 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d 571 (726)
..|.|+++||+.+.. ..|......| ..++.|+.+|.+|.|... ....+++++.+.+ +.+.+.. .
T Consensus 100 ~~~~l~~lhg~~~~~--~~~~~l~~~L-~~~~~v~~~d~~g~~~~~----------~~~~~~~~~a~~~~~~i~~~~--~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGFA--WQFSVLSRYL-DPQWSIIGIQSPRPNGPM----------QTAANLDEVCEAHLATLLEQQ--P 164 (329)
T ss_dssp SSCEEEEECCTTSCC--GGGGGGGGTS-CTTCEEEEECCCTTTSHH----------HHCSSHHHHHHHHHHHHHHHC--S
T ss_pred CCCcEEEEeCCcccc--hHHHHHHHhc-CCCCeEEEeeCCCCCCCC----------CCCCCHHHHHHHHHHHHHHhC--C
Confidence 357889999976643 4566555555 568999999999986421 0123566665543 3333221 2
Q ss_pred CCcEEEEEecccHHHHHHHHHc---CCCceeEEEEeCCccc
Q 004866 572 EHKLAGWGYSAGGLLVAAAINC---CPDLFRAVVLEVPFLD 609 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~~p~~d 609 (726)
.+++.++|||+||.++..++.+ +|+.++.+|+..+...
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~ 205 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPP 205 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCT
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCC
Confidence 3689999999999999999988 8999999998776554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00033 Score=73.66 Aligned_cols=144 Identities=8% Similarity=0.000 Sum_probs=83.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc--eecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~--~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++||... .+| .|+++|+.++. ...... ...+..++|+||++.|+....+ ..|+++
T Consensus 13 ~v~~~~~s~~g~~l~~~~-~d~----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vw 82 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTT-ATN----QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVY 82 (377)
T ss_dssp CCSCCEECSSSSEEECCC-SSS----CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC
T ss_pred cEEEEEECCCCCEEEEec-CCC----EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEE
Confidence 466778999999998763 333 48999999883 332211 3456789999999988776433 257777
Q ss_pred EcCCCC--ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCC--CeEEeec-cCCce-EEeeeecC
Q 004866 199 IIGSTD--EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFS--GLTLIWE-CEGLA-HCIVEHHE 272 (726)
Q Consensus 199 ~l~t~~--~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~l~~-~~~~~-~~~~~~~g 272 (726)
++.++. .....+..... ....+.|+||+++|+..+.++ .|.++|+.++.. ..+.+.. ....+ ...+++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGAR---VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp ------CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSS---CEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred EcCCCCceeeeeEecccCC-ceEEEEECCCCCEEEEEecCC---eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 776653 12222222222 234688999999988766533 477778776421 1344443 22222 23456777
Q ss_pred CEEEEEec
Q 004866 273 GFLYLFTD 280 (726)
Q Consensus 273 ~~l~~~t~ 280 (726)
..|+..+.
T Consensus 159 ~~l~~~~~ 166 (377)
T 3dwl_C 159 VLLAAGCA 166 (377)
T ss_dssp SEEEEEES
T ss_pred CEEEEEeC
Confidence 76666554
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0065 Score=67.69 Aligned_cols=189 Identities=14% Similarity=0.043 Sum_probs=106.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..+++||||++|+... .+| .|.++|+.+.+...... ......++|+|||+.|+....+ ..|.+++..
T Consensus 305 ~v~~~~~~~~~~~l~t~~-~d~----~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~~~~~~ 374 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASAS-DDK----TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD-----KTVKLWNRN 374 (577)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred CeEEEEECCCCCEEEEEe-CCC----eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCC-----CEEEEEcCC
Confidence 355678999999998764 344 38999998765544332 3456678999999988776432 256667753
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEec
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFTD 280 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~ 280 (726)
.... ..+..... ....+.++|||++|+..+.+ ..|.++|... .....+......+ ...++++++.|+..+.
T Consensus 375 ~~~~--~~~~~~~~-~v~~~~~s~dg~~l~~~~~d---~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 446 (577)
T 2ymu_A 375 GQLL--QTLTGHSS-SVRGVAFSPDGQTIASASDD---KTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASD 446 (577)
T ss_dssp CCEE--EEEECCSS-CEEEEEECTTSSCEEEEETT---SEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCEE--EEecCCCC-CeEEEEECCCCCEEEEEeCC---CEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEcC
Confidence 3211 12222222 23467899999998866543 3577778643 2334444333332 2356788887665543
Q ss_pred CcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEec
Q 004866 281 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSL 346 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l 346 (726)
.. .|...+.. ......+..+ ...+..+.+.. +.++++...++. |++++.
T Consensus 447 d~---------~v~~w~~~----~~~~~~~~~~--~~~v~~~~~spd~~~las~~~d~~--i~iw~~ 496 (577)
T 2ymu_A 447 DK---------TVKLWNRN----GQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKT--VKLWNR 496 (577)
T ss_dssp TS---------EEEEEETT----SCEEEEEECC--SSCEEEEEECTTSCEEEEEETTSE--EEEEET
T ss_pred CC---------EEEEEECC----CCEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCE--EEEEcC
Confidence 21 23334443 1122223222 23455555543 455556666664 445564
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00063 Score=72.37 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=107.6
Q ss_pred EeeceeeCCC-CCEEEEEEeCCCCcEEEEEEEECCCCc------eeccc-----cccccceeEEecCCCEEEEEEecCCC
Q 004866 123 YEELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGA------LCSKP-----QAVRVSNIAWAKDGQALIYVVTDQNK 190 (726)
Q Consensus 123 ~~~~~~~SPD-G~~la~~~~~~g~e~~~l~v~dl~tg~------~~~~~-----~~~~~~~~~WspDg~~l~y~~~~~~~ 190 (726)
.+..++|||| +++|+.. ..+| .|+++|+.+++ ..... ....+..++|+||+..++++...
T Consensus 115 ~v~~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 186 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASG-GNNG----EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS--- 186 (416)
T ss_dssp CCCEEEECSSSTTBEEEE-CSSS----CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---
T ss_pred ceEEEEEcCCCCCEEEEE-cCCC----eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC---
Confidence 4667789999 6666554 4445 39999999986 22211 13356789999995555555332
Q ss_pred CCceEEEEEcCCCCceeEEeeecC-----CceEEEEEEcCCCc-EEEEEEcCCCceEEEEEeCCCCCCCeEEee-ccCCc
Q 004866 191 RPYQIYCSIIGSTDEDALLLEESN-----ENVYVNIRHTKDFH-FVCVHTFSTTSSKVFLINAADPFSGLTLIW-ECEGL 263 (726)
Q Consensus 191 ~~~~l~~~~l~t~~~~~lv~~~~d-----~~~~~~~~~s~Dg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~ 263 (726)
...|.++++.++.. ...+.... ......+.|+|++. .|+.....+....|+++|+.++......+. .....
T Consensus 187 -dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 187 -SNFASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG 264 (416)
T ss_dssp -SSCEEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred -CCCEEEEECCCCCc-ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence 23688899877642 22222211 22345689999985 555444443334788889877432233332 22222
Q ss_pred e-EEeeee-cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC--CEEEEEEEeCCee
Q 004866 264 A-HCIVEH-HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK--THMALILREGRTY 339 (726)
Q Consensus 264 ~-~~~~~~-~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~--~~lv~~~~~~g~~ 339 (726)
+ ...+++ ++..|+..+. + ..|..+++. . .+....+... ...+..+.+.. ..++++...+|.
T Consensus 265 v~~~~~s~~~~~~l~s~~~-d--------g~v~~wd~~-~---~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~d~~- 329 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGR-D--------NTVLLWNPE-S---AEQLSQFPAR-GNWCFKTKFAPEAPDLFACASFDNK- 329 (416)
T ss_dssp EEEEEECSSCSSCEEEEES-S--------SEEEEECSS-S---CCEEEEEECS-SSCCCCEEECTTCTTEEEECCSSSE-
T ss_pred eeEEEeCCCCCCeEEEEeC-C--------CCEEEeeCC-C---CccceeecCC-CCceEEEEECCCCCCEEEEEecCCc-
Confidence 2 234566 5555554433 2 225555554 2 1111122221 22344444443 357777766665
Q ss_pred EEEEEecCC
Q 004866 340 RLCSVSLPL 348 (726)
Q Consensus 340 ~l~~~~l~~ 348 (726)
|.++++..
T Consensus 330 -i~iw~~~~ 337 (416)
T 2pm9_A 330 -IEVQTLQN 337 (416)
T ss_dssp -EEEEESCC
T ss_pred -EEEEEccC
Confidence 45556543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0096 Score=62.96 Aligned_cols=195 Identities=9% Similarity=0.021 Sum_probs=120.6
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
..++.|.++++.|.|+ |..+. .|+.++++++....+.. .....++++.+.+..||++... ...|++.++.
T Consensus 118 ~~gl~~d~~~~~ly~~-D~~~~---~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~----~~~I~~~~~d 189 (386)
T 3v65_B 118 AIALDFHHRRELVFWS-DVTLD---RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLD 189 (386)
T ss_dssp EEEEEEETTTTEEEEE-ETTTT---EEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT----TTEEEECBTT
T ss_pred cEEEEEecCCCeEEEE-eCCCC---cEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC----CCeEEEEeCC
Confidence 3456899988888665 65543 58999998876443322 2244678888888899998432 3478888886
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEe
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t 279 (726)
......++..... .-.++++.|++.+|+++.... ...|+++++++. ..+.+.... . .....++++++.||+.-
T Consensus 190 g~~~~~l~~~~l~--~P~giavdp~~g~ly~td~~~-~~~I~r~~~dG~--~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 190 GAHRKVLLWQSLE--KPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp SCSCEEEECSSCS--CEEEEEEETTTTEEEEEECSS-SCEEEEEETTSC--SCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred CCceEEeecCCCC--CCcEEEEEcCCCeEEEeccCC-CCEEEEEeCCCC--CcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 5433333322212 234678899999998876533 468999999763 333333221 1 22345677889888864
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEec
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l 346 (726)
.. +.+|.+++++ . ..-+.++.. ......++.++++.||++... ...|.+++.
T Consensus 265 ~~--------~~~I~~~d~d-G---~~~~~~~~~-~~~~P~giav~~~~ly~td~~--~~~V~~~~~ 316 (386)
T 3v65_B 265 AK--------HHVIERANLD-G---SHRKAVISQ-GLPHPFAITVFEDSLYWTDWH--TKSINSANK 316 (386)
T ss_dssp TT--------TTEEEEECTT-S---CSCEEEECS-SCSSEEEEEEETTEEEEEETT--TTEEEEEET
T ss_pred CC--------CCEEEEEeCC-C---CeeEEEEEC-CCCCceEEEEECCEEEEeeCC--CCeEEEEEC
Confidence 32 2468888876 2 222334332 233456777788888877543 345677764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0019 Score=68.57 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=108.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||... .+| .|+++|. +++... ... ...+..+.|+||++.|+....+ ..|+++++
T Consensus 110 ~v~~~~~s~~~~~l~~~~-~dg----~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~ 178 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGV-ENG----ELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE-----NVTILWNV 178 (425)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETT-----CCEEEEET
T ss_pred ceEEEEEcCCCCEEEEEe-CCC----eEEEEeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecC-----CeEEEEEC
Confidence 467788999999998875 444 3889994 444333 222 3467789999999988876432 36888888
Q ss_pred CCCCceeEEeeecCCc--------------eEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-E
Q 004866 201 GSTDEDALLLEESNEN--------------VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-H 265 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~--------------~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~ 265 (726)
.++.... .+...... ....+.|++++..+ .... ...|+++|+.++. ....+......+ .
T Consensus 179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~g~i~~~d~~~~~-~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 179 ISGTVMQ-HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV-IPGP---KGAIFVYQITEKT-PTGKLIGHHGPISV 252 (425)
T ss_dssp TTTEEEE-EECCC---------------CCCBSCCEEEETTEEE-EECG---GGCEEEEETTCSS-CSEEECCCSSCEEE
T ss_pred CCCcEEE-EeeccccCccceeeccccCCcceeeEEEEcCCCEEE-EEcC---CCeEEEEEcCCCc-eeeeeccCCCceEE
Confidence 7654211 12111110 02345778887633 3222 3468899988743 233333323322 3
Q ss_pred EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEe
Q 004866 266 CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVS 345 (726)
Q Consensus 266 ~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~ 345 (726)
..+++++..|+..+..+ .|..+++. . ......+.. ....+..+.+..+.++++...+| .|.+++
T Consensus 253 ~~~~~~~~~l~~~~~d~---------~i~i~d~~-~---~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~--~i~i~d 316 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDG---------TLRIWHGG-N---GNSQNCFYG-HSQSIVSASWVGDDKVISCSMDG--SVRLWS 316 (425)
T ss_dssp EEEETTTTEEEEEETTS---------CEEEECSS-S---BSCSEEECC-CSSCEEEEEEETTTEEEEEETTS--EEEEEE
T ss_pred EEECCCCCEEEEEcCCC---------EEEEEECC-C---CccceEecC-CCccEEEEEECCCCEEEEEeCCC--cEEEEE
Confidence 35667787666554321 24445554 2 111222222 23456666666544666666665 566677
Q ss_pred cCC
Q 004866 346 LPL 348 (726)
Q Consensus 346 l~~ 348 (726)
+.+
T Consensus 317 ~~~ 319 (425)
T 1r5m_A 317 LKQ 319 (425)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0024 Score=68.12 Aligned_cols=76 Identities=9% Similarity=-0.044 Sum_probs=51.8
Q ss_pred ceeeCCCCCEEEEEEeC-----CCCcEEEEEEEECCCCceecccc-c--------cccceeEEecCCCEEEEEEecCCCC
Q 004866 126 LSEVSPDHKFLAYTMYD-----KDNDYFTLSVRNLNSGALCSKPQ-A--------VRVSNIAWAKDGQALIYVVTDQNKR 191 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~-----~g~e~~~l~v~dl~tg~~~~~~~-~--------~~~~~~~WspDg~~l~y~~~~~~~~ 191 (726)
++.+||||++|..+... .|.....|.++|+.+++.+.... . ..-..+.++|||++||.+... .
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~---~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS---P 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS---S
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC---C
Confidence 56899999998655321 12223479999999998764322 1 134578999999999887432 1
Q ss_pred CceEEEEEcCCCC
Q 004866 192 PYQIYCSIIGSTD 204 (726)
Q Consensus 192 ~~~l~~~~l~t~~ 204 (726)
...|.++|+.+.+
T Consensus 199 ~~~VsVID~~t~k 211 (426)
T 3c75_H 199 APAVGVVDLEGKT 211 (426)
T ss_dssp SCEEEEEETTTTE
T ss_pred CCeEEEEECCCCe
Confidence 3468888887765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0062 Score=61.88 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=75.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+...+|+|||++|+... .+| .|+++|+.+|+.+.... ...+..++|+||++.|+-...| ..|.++++
T Consensus 57 ~v~~~~~~~~~~~l~s~s-~d~----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~ 126 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGS-DDF----RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNW 126 (304)
T ss_dssp CEEEEEEEGGGTEEEEEE-TTS----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEG
T ss_pred cEEEEEEeCCCCEEEEEC-CCC----EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCC-----CeEEEEEC
Confidence 355678999999998775 334 59999999998664322 3457789999999977654332 35788888
Q ss_pred CCCCceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeCCCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADPF 251 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~~~~ 251 (726)
.++..-...+... ......+.|+| |++.|+..+.+ ..|.++|+.+..
T Consensus 127 ~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~l~sgs~D---~~v~iwd~~~~~ 174 (304)
T 2ynn_A 127 ENNWALEQTFEGH-EHFVMCVAFNPKDPSTFASGCLD---RTVKVWSLGQST 174 (304)
T ss_dssp GGTTEEEEEECCC-CSCEEEEEECTTCTTEEEEEETT---SEEEEEETTCSS
T ss_pred CCCcchhhhhccc-CCcEEEEEECCCCCCEEEEEeCC---CeEEEEECCCCC
Confidence 7653222233322 22334678999 56766644433 357888887643
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.016 Score=60.38 Aligned_cols=195 Identities=10% Similarity=0.025 Sum_probs=119.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
..++.|+|+++.|.|+ |..+. .|+.++++++....+.. .....+++..+.+..||++... ...|++.++.
T Consensus 75 ~~~l~~d~~~~~ly~~-D~~~~---~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~----~~~I~~~~~d 146 (349)
T 3v64_C 75 AIALDFHHRRELVFWS-DVTLD---RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLD 146 (349)
T ss_dssp EEEEEEETTTTEEEEE-ETTTT---EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETT
T ss_pred eEEEEEeccccEEEEE-eccCC---ceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC----CCeEEEEcCC
Confidence 3456799988888665 65543 58999998876443322 2244678888888899998532 3479999987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEe
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t 279 (726)
......++.. +...-.++++.|++.+|+++.... ...|+++++++ ...+.+.... . .....++++++.||+.-
T Consensus 147 G~~~~~l~~~--~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 147 GAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp SCSCEEEECT--TCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEeC--CCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 5443333322 112224678899899998876533 46899999876 2333333211 1 12345677888888864
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEec
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l 346 (726)
.. +.+|.+++++ . ..-+.++.. ......++.++++.||++... ...|.+++.
T Consensus 222 ~~--------~~~I~~~~~d-G---~~~~~~~~~-~~~~P~giav~~~~ly~td~~--~~~V~~~~~ 273 (349)
T 3v64_C 222 AK--------HHVIERANLD-G---SHRKAVISQ-GLPHPFAITVFEDSLYWTDWH--TKSINSANK 273 (349)
T ss_dssp TT--------TTEEEEEETT-S---CSCEEEECS-SCSSEEEEEEETTEEEEEETT--TTEEEEEET
T ss_pred CC--------CCEEEEEeCC-C---CceEEEEeC-CCCCceEEEEECCEEEEecCC--CCeEEEEEc
Confidence 32 2468888886 2 222334322 233456777788888877543 345666663
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00065 Score=73.29 Aligned_cols=199 Identities=7% Similarity=-0.016 Sum_probs=105.8
Q ss_pred EeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEec-CCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAK-DGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++||| +++.||... .+|. |.|||+.+++...... ...+..++|+| |++.|+-...| ..|.
T Consensus 121 ~V~~l~~~P~~~~~lasGs-~dg~----i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v~ 190 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS-KGGD----IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTTR 190 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE-TTSC----EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCEE
T ss_pred CEEEEEEeCCCCCEEEEEe-CCCE----EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEEE
Confidence 367789999 566777664 5563 9999999886433211 34678899998 56655443222 3577
Q ss_pred EEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEE
Q 004866 197 CSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFL 275 (726)
Q Consensus 197 ~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l 275 (726)
++|+.+.....+............+.++|||++|+..... ..|+++|+.+ .....+......+ ...+++++..+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV---GNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS---SBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC---CcEeeeccCc--ceeEEEecccceEEeeeecCCCceE
Confidence 7888654322211111111223457889999998765443 3588888865 2222232222222 23456677766
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
++....++ ..+|+.+... . .......... ....+..+.+.. +..+++...+|. |+++++..
T Consensus 266 ~~s~s~d~------~v~iwd~~~~-~-~~~~~~~~~~--h~~~v~~~~~spdg~~l~s~~~D~~--i~iwd~~~ 327 (435)
T 4e54_B 266 LATASVDQ------TVKIWDLRQV-R-GKASFLYSLP--HRHPVNAACFSPDGARLLTTDQKSE--IRVYSASQ 327 (435)
T ss_dssp EEEEETTS------BCCEEETTTC-C-SSSCCSBCCB--CSSCEEECCBCTTSSEEEEEESSSC--EEEEESSS
T ss_pred EEEecCcc------eeeEEecccc-c-ccceEEEeee--ccccccceeECCCCCeeEEEcCCCE--EEEEECCC
Confidence 65554432 2345433221 1 1111111111 123455555443 344555666664 45566554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0026 Score=65.45 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=73.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc----eecccc-ccccceeEEecCCC-EEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA----LCSKPQ-AVRVSNIAWAKDGQ-ALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~----~~~~~~-~~~~~~~~WspDg~-~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++|+.+. .+| .|+++|+.+++ ...... ...+..++|+||++ .|+....+ ..|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~-~d~----~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITS-WDG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-----GEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE-TTS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-----SCEE
T ss_pred cEEEEEEcCCCCEEEEEc-CCC----eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-----CeEE
Confidence 466778999999998774 344 48999998887 332222 34667899999999 77766432 3688
Q ss_pred EEEc-CCCCceeEEeee--cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 197 CSII-GSTDEDALLLEE--SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 197 ~~~l-~t~~~~~lv~~~--~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
++++ .++.. ..+.. .. .....+.|+| ++.|+..+.+ ..|.++|+.+
T Consensus 83 ~wd~~~~~~~--~~~~~~~~~-~~v~~l~~~~-~~~l~s~~~d---~~i~iwd~~~ 131 (342)
T 1yfq_A 83 KVDLIGSPSF--QALTNNEAN-LGICRICKYG-DDKLIAASWD---GLIEVIDPRN 131 (342)
T ss_dssp EECSSSSSSE--EECBSCCCC-SCEEEEEEET-TTEEEEEETT---SEEEEECHHH
T ss_pred EEEeccCCce--EeccccCCC-CceEEEEeCC-CCEEEEEcCC---CeEEEEcccc
Confidence 8898 76542 22222 22 2234678999 8887765543 3577777654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.016 Score=60.88 Aligned_cols=143 Identities=10% Similarity=0.040 Sum_probs=85.0
Q ss_pred EeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCceeccc---------------cccccceeEEec-CCCEEEEEE
Q 004866 123 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP---------------QAVRVSNIAWAK-DGQALIYVV 185 (726)
Q Consensus 123 ~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~---------------~~~~~~~~~Wsp-Dg~~l~y~~ 185 (726)
.+..++||| ||++||.+. .+| .|.++|+.+++..... ....+..+.|+| +++.|+..
T Consensus 45 ~v~~~~~s~~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~- 118 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGG-SDG----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS- 118 (408)
T ss_dssp CEEEEEECTTTCCEEEEEE-TTS----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE-
T ss_pred cEEEEEEecCCCCEEEEEc-CCC----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE-
Confidence 466778999 999998874 445 3999999988654321 123567789999 55555444
Q ss_pred ecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCC---CcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC
Q 004866 186 TDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKD---FHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG 262 (726)
Q Consensus 186 ~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~D---g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 262 (726)
.. ...|.++++.++.. ...+..... ...+.++++ +.+|+..... ..|+++|+.++. ....+.....
T Consensus 119 ~~----d~~i~iwd~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~v~~~d~~~~~-~~~~~~~~~~ 187 (408)
T 4a11_B 119 SF----DKTLKVWDTNTLQT-ADVFNFEET--VYSHHMSPVSTKHCLVAVGTRG---PKVQLCDLKSGS-CSHILQGHRQ 187 (408)
T ss_dssp ET----TSEEEEEETTTTEE-EEEEECSSC--EEEEEECSSCSSCCEEEEEESS---SSEEEEESSSSC-CCEEECCCCS
T ss_pred eC----CCeEEEeeCCCCcc-ceeccCCCc--eeeeEeecCCCCCcEEEEEcCC---CeEEEEeCCCcc-eeeeecCCCC
Confidence 32 23788889887642 222222221 234566664 4477665543 358888987743 2333433333
Q ss_pred ce-EEeeeecCCEEEEEecCc
Q 004866 263 LA-HCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 263 ~~-~~~~~~~g~~l~~~t~~~ 282 (726)
.+ ...+++++..+++....+
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~d 208 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASAD 208 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEcCC
Confidence 32 235667777655554443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0049 Score=64.54 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=72.2
Q ss_pred CCCCCEEEEEEeCCCC--cEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecC-----CCCCceEEEEEcCC
Q 004866 130 SPDHKFLAYTMYDKDN--DYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQ-----NKRPYQIYCSIIGS 202 (726)
Q Consensus 130 SPDG~~la~~~~~~g~--e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~-----~~~~~~l~~~~l~t 202 (726)
.||+++ +|+.+...+ ....|+++|+++++.+.....+....+++||||+.||.+.... ......|..+|+.+
T Consensus 12 ~~~~~~-~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 12 APQENR-IYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp SCGGGE-EEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCCE-EEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 358877 466664311 1236999999999876533222223899999999998875311 11234588889887
Q ss_pred CC-ceeEEeee-----cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 203 TD-EDALLLEE-----SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 203 ~~-~~~lv~~~-----~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.+ ...+.... ...+ ..+.+||||++|++.... ..+.|.++|+++.
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p--~~i~~spdg~~l~v~n~~-~~~~v~v~d~~~~ 141 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYD--GLFRQTTDGKFIVLQNAS-PATSIGIVDVAKG 141 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCG--GGEEECTTSSEEEEEEES-SSEEEEEEETTTT
T ss_pred CcEEEEEEcCccccccCCCc--ceEEECCCCCEEEEECCC-CCCeEEEEECCCC
Confidence 65 22222110 0112 236789999999876542 2467888999873
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0089 Score=61.19 Aligned_cols=140 Identities=10% Similarity=-0.048 Sum_probs=80.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+....|||||++|+-.. .+| .|++||+.+|+...... ...+..+.|+||++.|+-...| ..|.++++
T Consensus 67 ~v~~~~~s~dg~~l~s~s-~D~----~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~i~vwd~ 136 (319)
T 3frx_A 67 IVQDCTLTADGAYALSAS-WDK----TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD-----KTIKVWTI 136 (319)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETT-----SCEEEEET
T ss_pred cEEEEEECCCCCEEEEEe-CCC----EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEC
Confidence 456678999999987764 444 59999999998665322 3456789999999977665433 25777777
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCC------cEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDF------HFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEG 273 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg------~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~ 273 (726)
.... ...+... ......+.++|++ ..|+..+.+ ..|.++|+.+.. ....+......+ ...++++|+
T Consensus 137 ~~~~--~~~~~~h-~~~v~~~~~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~ 209 (319)
T 3frx_A 137 KGQC--LATLLGH-NDWVSQVRVVPNEKADDDSVTIISAGND---KMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGT 209 (319)
T ss_dssp TSCE--EEEECCC-SSCEEEEEECCC------CCEEEEEETT---SCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSS
T ss_pred CCCe--EEEEecc-CCcEEEEEEccCCCCCCCccEEEEEeCC---CEEEEEECCcch-hheeecCCCCcEEEEEEcCCCC
Confidence 5432 1122111 1223356677754 345433332 357777887631 112222222222 234567787
Q ss_pred EEEEEe
Q 004866 274 FLYLFT 279 (726)
Q Consensus 274 ~l~~~t 279 (726)
.|+..+
T Consensus 210 ~l~s~~ 215 (319)
T 3frx_A 210 LIASAG 215 (319)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 665544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0081 Score=61.91 Aligned_cols=240 Identities=12% Similarity=0.087 Sum_probs=124.0
Q ss_pred CCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEE
Q 004866 131 PDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALL 209 (726)
Q Consensus 131 PDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv 209 (726)
.++++|..+. ..++ .|.++|+++++.+.... ......+++++|| .||.+... ...|+++|+.+.+....+
T Consensus 51 ~~~~~lyv~~-~~~~---~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~----~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 51 IRDGIGWIVV-NNSH---VIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIW----DYRIFIINPKTYEITGYI 121 (328)
T ss_dssp EETTEEEEEE-GGGT---EEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBS----CSEEEEEETTTTEEEEEE
T ss_pred EECCEEEEEE-cCCC---EEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECC----CCeEEEEECCCCeEEEEE
Confidence 3667664443 3222 59999999998754322 3345678899998 67666422 347999998876521111
Q ss_pred eeecC------CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcc
Q 004866 210 LEESN------ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAK 283 (726)
Q Consensus 210 ~~~~d------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~ 283 (726)
.... .+ .++.+ +++.|++... +....|+++|+.++. ....+..........++++|+ +|+.++...
T Consensus 122 -~~g~~~~~~~~p--~~i~~--~~~~lyv~~~-~~~~~v~viD~~t~~-~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~ 193 (328)
T 3dsm_A 122 -ECPDMDMESGST--EQMVQ--YGKYVYVNCW-SYQNRILKIDTETDK-VVDELTIGIQPTSLVMDKYNK-MWTITDGGY 193 (328)
T ss_dssp -ECTTCCTTTCBC--CCEEE--ETTEEEEEEC-TTCCEEEEEETTTTE-EEEEEECSSCBCCCEECTTSE-EEEEBCCBC
T ss_pred -EcCCccccCCCc--ceEEE--ECCEEEEEcC-CCCCEEEEEECCCCe-EEEEEEcCCCccceEEcCCCC-EEEEECCCc
Confidence 1111 22 13444 6777776643 224579999998732 122332222222334456554 777766431
Q ss_pred cC--CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCCCCCCcceeecc
Q 004866 284 EG--QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPLPAGKGVVHLKE 359 (726)
Q Consensus 284 ~~--~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~ 359 (726)
.. .......|+.+|.. + .+....+.-..+.....+.+. ++.||+... .++++|..++. +..
T Consensus 194 ~~~~~~~~~~~v~~id~~-t---~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~------~~~ 258 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAE-T---FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADR------VPV 258 (328)
T ss_dssp TTCSSCBCCCEEEEEETT-T---TEEEEEEECCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSS------CCS
T ss_pred cCCccccCCceEEEEECC-C---CeEEEEEecCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCc------eee
Confidence 10 00001468888875 2 222222221111233455555 466665422 78888876542 100
Q ss_pred cccccccC-CCceeeeecCCCCcCCCcEEEEEE-ccCCCCceEEEEECCCCe
Q 004866 360 LHPHFLPL-PKYVSQIVPGPNYDYYSSTMRFAI-SSPVMPDAVVDYDLSYGK 409 (726)
Q Consensus 360 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~-ss~~~P~~~~~~d~~~~~ 409 (726)
...++. ......+ ..+++++.+.++- .++.....|+.+|.+ ++
T Consensus 259 --~~~~~~~~~~p~gi----~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 259 --RPFLEFRDTKYYGL----TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp --SCSBCCCSSCEEEE----EECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred --eeeecCCCCceEEE----EEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 001111 0111222 2355555565542 334567899999998 54
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0017 Score=68.12 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=80.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce---e-ccc--cccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL---C-SKP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~---~-~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++|+... .+| .|+++|+.+++. . .+. ....+..++|+||++.|+....+ ..|+
T Consensus 102 ~v~~~~~~~~~~~l~~~~-~d~----~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~ 171 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGS-GAR----VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-----RKAY 171 (377)
T ss_dssp CEEEEECCTTSSCCEEEE-SSS----CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-----SCEE
T ss_pred ceEEEEECCCCCEEEEEe-cCC----eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-----CEEE
Confidence 466788999999998875 344 389999998863 1 121 13356789999999988776543 2577
Q ss_pred EEEcCCCC---------------ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC---eEEee
Q 004866 197 CSIIGSTD---------------EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG---LTLIW 258 (726)
Q Consensus 197 ~~~l~t~~---------------~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~---~~~l~ 258 (726)
++++.+.. ...++..-........+.|+|||++|+..+.+ ..|.++|+.++... ...+.
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~ 248 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD---SSVTIAYPSAPEQPPRALITVK 248 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT---TEEC-CEECSTTSCEEECCCEE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC---CcEEEEECCCCCCcceeeEeec
Confidence 77764321 01122111112223468899999988876543 35778888775331 12222
Q ss_pred ccCCce-EEeeeecCCEEE
Q 004866 259 ECEGLA-HCIVEHHEGFLY 276 (726)
Q Consensus 259 ~~~~~~-~~~~~~~g~~l~ 276 (726)
.....+ ...++++|..|+
T Consensus 249 ~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 249 LSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp CSSSCEEEEEEEETTEEEE
T ss_pred CCCCceEEEEEcCCCCEEE
Confidence 222222 334567766443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.01 Score=61.09 Aligned_cols=201 Identities=14% Similarity=0.132 Sum_probs=100.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc-------eecccc--ccccceeEEecCCCEEEEEEecCCCCCc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA-------LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~-------~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
.+..++|||||++||-.. .+| .|.++|++++. .+.... ...+..++|+|||+.|+-...| .
T Consensus 60 ~v~~v~~sp~~~~las~s-~D~----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~ 129 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGS-FDS----TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----K 129 (330)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT-----S
T ss_pred CEEEEEECCCCCEEEEEe-CCC----cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----C
Confidence 466788999999988764 344 38999986432 111111 2356789999999988766433 2
Q ss_pred eEEEEEcCCC-Ccee--EEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC-eEEeeccCCce-EEee
Q 004866 194 QIYCSIIGST-DEDA--LLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG-LTLIWECEGLA-HCIV 268 (726)
Q Consensus 194 ~l~~~~l~t~-~~~~--lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~-~~~l~~~~~~~-~~~~ 268 (726)
.|+++++... ..-. ..+.... .....+.|+||+++|+..+.++ .|.++|+.++..+ ...+......+ ...+
T Consensus 130 ~v~iwd~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~---~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 130 SVWIWETDESGEEYECISVLQEHS-QDVKHVIWHPSEALLASSSYDD---TVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp CEEEEECCTTCCCCEEEEEECCCS-SCEEEEEECSSSSEEEEEETTS---CEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeccCCCCCeEEEEEeccCC-CceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCeeEEEEccCCCCcEEEEEe
Confidence 5778888432 2111 2222222 2234688999999876555432 3555555442111 12222222222 2234
Q ss_pred eecCC-EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE--eecCCCceEEEEeeeCCEEEEEEEeCCeeEEEE
Q 004866 269 EHHEG-FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV--FIDDQGLVVEDVDFCKTHMALILREGRTYRLCS 343 (726)
Q Consensus 269 ~~~g~-~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v--~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~ 343 (726)
++++. .+++....++ ..+|+.+..........|..+ +.......+..+.+..+.+++....+|.-+|+.
T Consensus 206 ~~~~~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 206 DKTEGVFRLCSGSDDS------TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYE 277 (330)
T ss_dssp CCSSSSCEEEEEETTS------CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred cCCCCeeEEEEEeCCC------eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEE
Confidence 55532 2222222222 355665532201111223322 111123345566665555667777777655543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0063 Score=68.72 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=72.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++||||++.+..+...++ .|.++|..+++...... ...+..++|+|||+.|+-...| ..|.++++
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~----~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D-----~~i~lwd~ 219 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDN----TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNG 219 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTS----CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred CceEEEECCCCCeEEEEEeCCC----eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC-----CcEEEEEC
Confidence 3566789999985334434444 38999998876544322 3356789999999987765433 35778887
Q ss_pred CCCCceeEEeee------cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLLEE------SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~------~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+++. ...+.. ........+.|+|||++|+..+.+ ..|.++|+.+
T Consensus 220 ~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D---~~v~lWd~~~ 270 (611)
T 1nr0_A 220 VDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---KTIKIWNVAT 270 (611)
T ss_dssp TTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---SEEEEEETTT
T ss_pred CCCcE-eeeeccccccccccCCCEEEEEECCCCCEEEEEeCC---CeEEEEeCCC
Confidence 76542 122211 112233568999999998765543 3566677765
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=73.89 Aligned_cols=95 Identities=16% Similarity=0.008 Sum_probs=66.6
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
..|.||++||..+.. ..|......|. +.|+.+|.++.. ...+++++.+.+..+++.-. ..
T Consensus 23 ~~~~l~~~hg~~~~~--~~~~~~~~~L~---~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~~-~~ 82 (283)
T 3tjm_A 23 SERPLFLVHPIEGST--TVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQVQ-PE 82 (283)
T ss_dssp SSCCEEEECCTTCCS--GGGHHHHHHCS---SCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTTC-CS
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHhcC---ceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHhC-CC
Confidence 346788999976643 45777666664 899999996422 12467777666555554321 23
Q ss_pred CcEEEEEecccHHHHHHHHHcC---CCcee---EEEEeCCc
Q 004866 573 HKLAGWGYSAGGLLVAAAINCC---PDLFR---AVVLEVPF 607 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~---p~~f~---a~v~~~p~ 607 (726)
+++.++||||||.++..++.+. |+.+. .+|+..+.
T Consensus 83 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~ 123 (283)
T 3tjm_A 83 GPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 123 (283)
T ss_dssp SCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCC
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCC
Confidence 6899999999999999888755 77887 77776654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.63 E-value=0.023 Score=59.65 Aligned_cols=112 Identities=6% Similarity=-0.033 Sum_probs=65.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc------eec-ccc-ccccceeEEecC----C---CEEEEEEec
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA------LCS-KPQ-AVRVSNIAWAKD----G---QALIYVVTD 187 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~------~~~-~~~-~~~~~~~~WspD----g---~~l~y~~~~ 187 (726)
.+..++|+| ++|+... .+| .|++||+.+++ ... ... ...+..+.|+|| | +.|+....+
T Consensus 18 ~i~~~~~~~--~~l~s~~-~dg----~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCS-GDG----YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp CEEEEEECS--SEEEEEE-TTS----EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred CeEEEEecC--CeEEEEc-CCC----EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 456678999 6776653 444 59999999987 222 211 335678999999 8 877665433
Q ss_pred CCCCCceEEEEEcCCCCc--e--eEEeeecC----CceEEEEEEc----CCCcE-EEEEEcCCCceEEEEEeCCC
Q 004866 188 QNKRPYQIYCSIIGSTDE--D--ALLLEESN----ENVYVNIRHT----KDFHF-VCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 188 ~~~~~~~l~~~~l~t~~~--~--~lv~~~~d----~~~~~~~~~s----~Dg~~-l~~~~~~~~~~~l~~~d~~~ 249 (726)
..|+++++.++.. . ...+.... ......+.|+ |++++ |+..+.+ ..|+++|+.+
T Consensus 91 -----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 157 (397)
T 1sq9_A 91 -----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---GTTYIWKFHP 157 (397)
T ss_dssp -----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---SCEEEEEEES
T ss_pred -----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---CcEEEEeCCc
Confidence 3577777765542 1 11222221 1234568899 99999 6655443 3466666654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.014 Score=60.12 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=69.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc------cccceeEEecCCCEEEEEEecC--CCCCceE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA------VRVSNIAWAKDGQALIYVVTDQ--NKRPYQI 195 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~------~~~~~~~WspDg~~l~y~~~~~--~~~~~~l 195 (726)
+..+.|+|||+.++.. .. .|+++|+++|+...+... .....+.|+|||+ |+++.... ......|
T Consensus 92 v~~i~~~~dg~l~v~~--~~-----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS--DD-----GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSI 163 (326)
T ss_dssp EEEEEEEETTEEEEEE--TT-----EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEE
T ss_pred ceEEEEeCCCeEEEEE--CC-----CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEE
Confidence 4456799999976543 22 299999999986543221 2346789999998 66664432 1123579
Q ss_pred EEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC
Q 004866 196 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 248 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 248 (726)
|+++ +++... +..... ...++.|+|||+.|++.... ...|++++++
T Consensus 164 ~~~~--~g~~~~-~~~~~~--~~~~i~~s~dg~~lyv~~~~--~~~I~~~d~~ 209 (326)
T 2ghs_A 164 YHVA--KGKVTK-LFADIS--IPNSICFSPDGTTGYFVDTK--VNRLMRVPLD 209 (326)
T ss_dssp EEEE--TTEEEE-EEEEES--SEEEEEECTTSCEEEEEETT--TCEEEEEEBC
T ss_pred EEEe--CCcEEE-eeCCCc--ccCCeEEcCCCCEEEEEECC--CCEEEEEEcc
Confidence 9988 333222 222111 22367899999999886543 3579999985
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.018 Score=58.69 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=74.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee----cc-c-cccccceeEEec--CCCEEEEEEecCCCCCce
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC----SK-P-QAVRVSNIAWAK--DGQALIYVVTDQNKRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~----~~-~-~~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~~~ 194 (726)
.+..++|||||++||.+. .+| .|+++|+.++... .. . ....+..++|+| |++.|+....+ ..
T Consensus 13 ~v~~~~~~~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----g~ 82 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCS-SDQ----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-----KT 82 (351)
T ss_dssp CEEEEEECSSSSEEEEEE-TTS----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----SC
T ss_pred ceeEEEEcCCCCEEEEee-CCC----eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----Ce
Confidence 467788999999998774 444 5999999876421 11 1 134567899999 68877665433 35
Q ss_pred EEEEEcCCCCc-------e-eEEeeecCCceEEEEEEcCC--CcEEEEEEcCCCceEEEEEeCCCC
Q 004866 195 IYCSIIGSTDE-------D-ALLLEESNENVYVNIRHTKD--FHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 195 l~~~~l~t~~~-------~-~lv~~~~d~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
|.++++.++.. . ...+.... .....+.|+|+ +++|+....+ ..|.++|+.++
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~ 144 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGND---GILRLYDALEP 144 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT---CEEEEEECSST
T ss_pred EEEEecCCCcccccccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCC---CcEEEecCCCh
Confidence 77777766531 1 12222222 23456889999 9988876643 36888888764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.015 Score=60.48 Aligned_cols=188 Identities=10% Similarity=-0.014 Sum_probs=104.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEec--CCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAK--DGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+....|+||+++|+-.. .+| .|.+||+++++.+.... ...+..+.|+| +|+.|+-...| ..|+++|
T Consensus 157 v~~~~~~~~~~~l~t~s-~D~----~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd 226 (354)
T 2pbi_B 157 LSACSFTNSDMQILTAS-GDG----TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD-----KKAMVWD 226 (354)
T ss_dssp EEEEEECSSSSEEEEEE-TTS----EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT-----SCEEEEE
T ss_pred EEEEEEeCCCCEEEEEe-CCC----cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC-----CeEEEEE
Confidence 55678999999987654 344 59999999998765322 23455677877 45666554322 3688889
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC---CceEEeeeecCCEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE---GLAHCIVEHHEGFLY 276 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~---~~~~~~~~~~g~~l~ 276 (726)
+.+++. ...+.... .....+.|+|||++|+..+.+ ..+.++|+.+.. ....+.... ......++++|..|+
T Consensus 227 ~~~~~~-~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D---~~v~lwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 227 MRSGQC-VQAFETHE-SDVNSVRYYPSGDAFASGSDD---ATCRLYDLRADR-EVAIYSKESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp TTTCCE-EEEECCCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTE-EEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCcE-EEEecCCC-CCeEEEEEeCCCCEEEEEeCC---CeEEEEECCCCc-EEEEEcCCCcccceeEEEEeCCCCEEE
Confidence 987652 22332222 223468899999988766543 357788887631 122222111 112334567787666
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEE
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRL 341 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l 341 (726)
..++.. . |..+++. . ......+ .. ....+..+.+.. +.++++...+|.-+|
T Consensus 301 ~g~~d~-------~--i~vwd~~-~--~~~~~~l-~~-h~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 301 AGYNDY-------T--INVWDVL-K--GSRVSIL-FG-HENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EEETTS-------C--EEEEETT-T--CSEEEEE-CC-CSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEECCC-------c--EEEEECC-C--CceEEEE-EC-CCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 554322 2 4444543 1 1112222 22 233455555543 345556666665444
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0052 Score=63.68 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=82.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++|+-.. .+| .|++||+.+++...... ...+..++|+||++.|+-...+ ..|.++++
T Consensus 78 ~V~~~~~~~~~~~l~s~s-~D~----~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~ 147 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSS-WDK----TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE-----REIKLWNI 147 (343)
T ss_dssp CEEEEEECSSTTEEEEEE-TTS----EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETT-----SCEEEEES
T ss_pred ceEEEEECCCCCEEEEEc-CCC----cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCC-----CEEEEEec
Confidence 466778999999987553 444 59999999997654322 3456789999999988765433 35777787
Q ss_pred CCCCceeEEeee--cCCceEEEEEEcCCC----------cEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEe
Q 004866 201 GSTDEDALLLEE--SNENVYVNIRHTKDF----------HFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCI 267 (726)
Q Consensus 201 ~t~~~~~lv~~~--~d~~~~~~~~~s~Dg----------~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~ 267 (726)
.... ...... ........+.++|++ .+|+..+.+ ..|.++|... .....+......+ ...
T Consensus 148 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~--~~~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 148 LGEC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD---GRLKVWNTNF--QIRYTFKAHESNVNHLS 220 (343)
T ss_dssp SSCE--EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT---SEEEEEETTT--EEEEEEECCSSCEEEEE
T ss_pred cCCc--eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC---CEEEEEcCCC--ceeEEEcCccccceEEE
Confidence 5321 111111 111223457788887 555544432 3577777432 2222233333322 235
Q ss_pred eeecCCEEEEEec
Q 004866 268 VEHHEGFLYLFTD 280 (726)
Q Consensus 268 ~~~~g~~l~~~t~ 280 (726)
++++|+.|+..+.
T Consensus 221 ~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 221 ISPNGKYIATGGK 233 (343)
T ss_dssp ECTTSSEEEEEET
T ss_pred ECCCCCEEEEEcC
Confidence 6788887665443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0025 Score=73.27 Aligned_cols=144 Identities=13% Similarity=0.030 Sum_probs=83.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++|+-.. .+| .|+|||+.+++...... ...+..++|+||++.|+-...| ..|.++++
T Consensus 432 ~v~~v~~s~~g~~l~sgs-~Dg----~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~ 501 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGS-WDG----ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD-----RTIKLWNT 501 (694)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-----SCEEEECT
T ss_pred cEEEEEECCCCCEEEEEe-CCC----cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC-----CEEEEEEC
Confidence 466788999999998664 444 59999999987654322 3456789999999988765433 25666676
Q ss_pred CCCCceeEEeee--cCCceEEEEEEcCCCc-EEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEE
Q 004866 201 GSTDEDALLLEE--SNENVYVNIRHTKDFH-FVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLY 276 (726)
Q Consensus 201 ~t~~~~~lv~~~--~d~~~~~~~~~s~Dg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~ 276 (726)
..... ..+... ........+.|+|++. .++++.... ..|.++|+.+.. ....+......+ ...++++|+.|+
T Consensus 502 ~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 502 LGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD--KTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCA 577 (694)
T ss_dssp TSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT--SCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC--CeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 43211 112111 1112234578999973 233333322 347788887632 122232222222 235667787665
Q ss_pred EEec
Q 004866 277 LFTD 280 (726)
Q Consensus 277 ~~t~ 280 (726)
..+.
T Consensus 578 sg~~ 581 (694)
T 3dm0_A 578 SGGK 581 (694)
T ss_dssp EEET
T ss_pred EEeC
Confidence 5443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.61 E-value=0.029 Score=57.39 Aligned_cols=198 Identities=10% Similarity=0.058 Sum_probs=120.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-ccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
..++.|.+.++.|-++ |..+. .|+.++++++.... +.. .....++++.+.+..||++.. ....|++.++
T Consensus 37 ~~~ld~d~~~~~lyw~-D~~~~---~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~----~~~~I~~~~~ 108 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWS-DVSEE---AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS----ETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEGGGTEEEEE-ETTTT---EEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET----TTTEEEEEET
T ss_pred cEEEEEEeCCCEEEEE-ECCCC---cEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC----CCCEEEEEEC
Confidence 3456799988887555 66554 48899998874321 111 224456888888888998743 2347889898
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLF 278 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~ 278 (726)
.......++...... -.++++.|.+.+|+++... ....|+++++++. ..+.+.... . .....++++++.||+.
T Consensus 109 dG~~~~~l~~~~~~~--P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~--~~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 109 DGSLRKVLFWQELDQ--PRAIALDPSSGFMYWTDWG-EVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp TSCSCEEEECSSCSS--EEEEEEEGGGTEEEEEECS-SSCEEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEeCCCCC--ccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCC--CeEEEEECCCCCccEEEEeccCCEEEEE
Confidence 654333333222222 2467788888888887642 3468999998762 333333221 1 1234567788888886
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
-. . +.+|.+++++ . ..-+.++ ........++.++++.+|++.. +...|.+++..++
T Consensus 184 D~-~-------~~~I~~~d~d-G---~~~~~~~-~~~~~~P~glav~~~~lywtd~--~~~~V~~~~~~~G 239 (318)
T 3sov_A 184 DA-K-------LNFIHKSNLD-G---TNRQAVV-KGSLPHPFALTLFEDILYWTDW--STHSILACNKYTG 239 (318)
T ss_dssp ET-T-------TTEEEEEETT-S---CSCEEEE-CSCCSCEEEEEEETTEEEEEET--TTTEEEEEETTTC
T ss_pred EC-C-------CCEEEEEcCC-C---CceEEEe-cCCCCCceEEEEeCCEEEEEec--CCCeEEEEECCCC
Confidence 43 2 2468899887 2 2223343 3223445677888888888743 4456777776443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.012 Score=61.74 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=73.5
Q ss_pred EeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCC---EEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQ---ALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~---~l~y~~~~~~~~~~~l~~ 197 (726)
.+..++|+| +++.|+.. ..+| .|.++|+.+++...... ......+.|+|++. .|+....+ ..|++
T Consensus 101 ~v~~~~~~~~~~~~l~s~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~ 170 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSS-SFDK----TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQL 170 (408)
T ss_dssp CEEEEEECTTCTTCEEEE-ETTS----EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEE
T ss_pred cEEEEEEccCCCcEEEEE-eCCC----eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEE
Confidence 467788999 66666655 4445 59999999998665433 44566788888554 56555322 36888
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCC
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPF 251 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~ 251 (726)
+++.++.... .+..... ....+.|+|+++++++..... ..|.++|+.++.
T Consensus 171 ~d~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~ll~~~~~d--g~i~i~d~~~~~ 220 (408)
T 4a11_B 171 CDLKSGSCSH-ILQGHRQ-EILAVSWSPRYDYILATASAD--SRVKLWDVRRAS 220 (408)
T ss_dssp EESSSSCCCE-EECCCCS-CEEEEEECSSCTTEEEEEETT--SCEEEEETTCSS
T ss_pred EeCCCcceee-eecCCCC-cEEEEEECCCCCcEEEEEcCC--CcEEEEECCCCC
Confidence 8987765222 2222222 234688999999765554433 347788886643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0019 Score=79.62 Aligned_cols=192 Identities=11% Similarity=0.072 Sum_probs=111.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..+.+||||++++... .+| .|+++|+.+++...... ...+..++|+|||+.|+.... ...|.++++.
T Consensus 964 i~~~~~sp~g~~l~~g~-~~g----~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----dg~i~vwd~~ 1033 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGD-EDG----AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-----DSVIQVWNWQ 1033 (1249)
T ss_dssp EEEEEECTTSSEEEEEE-TTS----CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS-----SSBEEEEETT
T ss_pred EEEEEEcCCCCEEEEEc-CCC----CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC-----CCEEEEEECC
Confidence 45678999999999885 445 38999999987655322 346778999999998877632 2368888987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eEEeeeecCCEEEEEec
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AHCIVEHHEGFLYLFTD 280 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~~~t~ 280 (726)
++.. +...........+.+++|++.+.. +. ...+.++|+.++. ....+...... ....++++|..++..+.
T Consensus 1034 ~~~~---~~~~~~~~~v~~~~~~~~~~l~~~-~~---dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A 1034 TGDY---VFLQAHQETVKDFRLLQDSRLLSW-SF---DGTVKVWNVITGR-IERDFTCHQGTVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp TTEE---ECCBCCSSCEEEEEECSSSEEEEE-ES---SSEEEEEETTTTC-CCEEEECCSSCCCCEEECSSSSSCEEECC
T ss_pred CCce---EEEecCCCcEEEEEEcCCCcEEEE-EC---CCcEEEEECCCCc-eeEEEcccCCcEEEEEECCCCCEEEEEcC
Confidence 7642 111122223346788998875443 22 2468889998743 23334333322 23456788877665543
Q ss_pred CcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCCC
Q 004866 281 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
.+ ..+++.+... .....+..+ ...+..+.+.. +.++++...+|. |+++++.++
T Consensus 1106 d~-------~v~iwd~~~~-----~~~~~l~~h--~~~v~~~~~s~dg~~lat~~~dg~--i~vwd~~~~ 1159 (1249)
T 3sfz_A 1106 DK-------TAKIWSFDLL-----SPLHELKGH--NGCVRCSAFSLDGILLATGDDNGE--IRIWNVSDG 1159 (1249)
T ss_dssp SS-------CCCEECSSSS-----SCSBCCCCC--SSCEEEEEECSSSSEEEEEETTSC--CCEEESSSS
T ss_pred CC-------cEEEEECCCc-----ceeeeeccC--CCcEEEEEECCCCCEEEEEeCCCE--EEEEECCCC
Confidence 22 2345443321 111222112 23355555543 345566666665 455666543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.011 Score=63.06 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=77.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||-.. .+| .|.+||+.+++.+.... ...+..+.|+|||+.|+-...| ..|.++++
T Consensus 152 ~V~~v~~~~~~~~l~sgs-~D~----~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~ 221 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCS-ADM----TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEV 221 (410)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEe-CCC----eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEEC
Confidence 466788999999887764 445 38999999987655322 3457789999999987665432 36888999
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.++.. ...+.... .....+.+++||++|+..+.+ ..|.++|+.++
T Consensus 222 ~~~~~-~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D---~~v~vwd~~~~ 266 (410)
T 1vyh_C 222 QTGYC-VKTFTGHR-EWVRMVRPNQDGTLIASCSND---QTVRVWVVATK 266 (410)
T ss_dssp TTCCE-EEEEECCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTC
T ss_pred CCCcE-EEEEeCCC-ccEEEEEECCCCCEEEEEcCC---CeEEEEECCCC
Confidence 87652 22232222 233457889999988766543 34777788763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00075 Score=70.81 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=76.2
Q ss_pred eeCCCCCEEEEEEeCCC-CcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecC-----CCCCceEEEEEcC
Q 004866 128 EVSPDHKFLAYTMYDKD-NDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQ-----NKRPYQIYCSIIG 201 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g-~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~-----~~~~~~l~~~~l~ 201 (726)
...|||+++ |+.+... .....|+++|+++++.+.....+....+..||||+++|.+..-. ..+...|..+|..
T Consensus 39 ~~~pd~~~v-yV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 39 APAPDARRV-YVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCCTTEE-EEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred ccCCCCCEE-EEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 368999986 6666531 00137999999999877543333223599999999998874210 0123468889988
Q ss_pred CCC-ceeEEeee------cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 202 STD-EDALLLEE------SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 202 t~~-~~~lv~~~------~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+.+ ...+.... ...++ .+.+||||++|++... ...+.|.++|+.+.
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~--~~a~spDGk~lyVan~-~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPW--MTSLTPDGKTLLFYQF-SPAPAVGVVDLEGK 170 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGG--GEEECTTSSEEEEEEC-SSSCEEEEEETTTT
T ss_pred CCeEEEEEECCCccccccCCCCc--eEEEcCCCCEEEEEEc-CCCCeEEEEECCCC
Confidence 876 33322211 01222 3578999999887643 23467999999884
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.035 Score=55.93 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=70.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc--eecc-cc-ccccceeEEecC--CCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA--LCSK-PQ-AVRVSNIAWAKD--GQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~--~~~~-~~-~~~~~~~~WspD--g~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++||-.. .+| .|+|+|++++. .+.. .. ...+..++|+|+ |+.|+-...| ..|.
T Consensus 11 ~V~~~~~s~~g~~las~s-~D~----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v~ 80 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCS-SDK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVM 80 (297)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEEE
T ss_pred ceEEEEECCCCCEEEEEe-CCC----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEEE
Confidence 355678999999998775 344 38999997642 2211 11 335677899874 7766554322 3688
Q ss_pred EEEcCCCC-ceeEEeeecCCceEEEEEEcCC--CcEEEEEEcCCCceEEEEEeCCCC
Q 004866 197 CSIIGSTD-EDALLLEESNENVYVNIRHTKD--FHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 197 ~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
++++.++. .....+.... .....+.|+|+ |++|+..+.+ ..|.++|+.++
T Consensus 81 iWd~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~d---~~v~~wd~~~~ 133 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSD---GKVSVVEFKEN 133 (297)
T ss_dssp EEEBSSSCBCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETT---SEEEEEEBCSS
T ss_pred EEEcCCCceEEEEEeecCC-CceeEEEeCcCCCCcEEEEEECC---CcEEEEEecCC
Confidence 88887654 2222332222 22346889998 7887765543 35777787653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.58 E-value=0.039 Score=56.85 Aligned_cols=138 Identities=7% Similarity=-0.035 Sum_probs=78.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCC----------CEEEEEEecC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDG----------QALIYVVTDQ 188 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg----------~~l~y~~~~~ 188 (726)
.+..++|||||++|+-.. .+| .|.+||+.+........ ...+..+.|+|++ ..|+-. ..
T Consensus 120 ~v~~v~~sp~~~~l~s~~-~d~----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~-~~- 192 (343)
T 2xzm_R 120 EVYSVAFSPDNRQILSAG-AER----EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV-GW- 192 (343)
T ss_dssp CEEEEEECSSTTEEEEEE-TTS----CEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE-ET-
T ss_pred cEEEEEECCCCCEEEEEc-CCC----EEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE-cC-
Confidence 456778999999997664 444 39999998543332221 2345678999997 344433 22
Q ss_pred CCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEee
Q 004866 189 NKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIV 268 (726)
Q Consensus 189 ~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~ 268 (726)
...|.+++... .....+..... ....+.|+|||++|+..+.+ ..|.++|+.........+.....-....+
T Consensus 193 ---d~~i~iwd~~~--~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~~~~v~~v~~ 263 (343)
T 2xzm_R 193 ---DGRLKVWNTNF--QIRYTFKAHES-NVNHLSISPNGKYIATGGKD---KKLLIWDILNLTYPQREFDAGSTINQIAF 263 (343)
T ss_dssp ---TSEEEEEETTT--EEEEEEECCSS-CEEEEEECTTSSEEEEEETT---CEEEEEESSCCSSCSEEEECSSCEEEEEE
T ss_pred ---CCEEEEEcCCC--ceeEEEcCccc-cceEEEECCCCCEEEEEcCC---CeEEEEECCCCcccceeecCCCcEEEEEE
Confidence 23677777432 12222322222 23468899999998766543 46888888442222233322222223345
Q ss_pred eecCCEEE
Q 004866 269 EHHEGFLY 276 (726)
Q Consensus 269 ~~~g~~l~ 276 (726)
++++..+.
T Consensus 264 sp~~~~la 271 (343)
T 2xzm_R 264 NPKLQWVA 271 (343)
T ss_dssp CSSSCEEE
T ss_pred CCCCCEEE
Confidence 67776544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0018 Score=69.77 Aligned_cols=115 Identities=9% Similarity=0.011 Sum_probs=74.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..+.|||||++|+... ..| .|+++|+.+.....+.. ...+..++|+|+++.++.+...+ ..|.++|+.+
T Consensus 212 ~~~~~~~~~~~~l~~g~-~dg----~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d----~~v~iwd~~~ 282 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGD-NVG----NVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVD----QTVKIWDLRQ 282 (435)
T ss_dssp CCCEEEETTTTEEEEEC-SSS----BEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT----SBCCEEETTT
T ss_pred EEEEEECCCCCEEEEEe-CCC----cEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCc----ceeeEEeccc
Confidence 44578999999998763 444 49999998655433322 34677899999999877765432 2566778766
Q ss_pred CC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 203 TD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 203 ~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.. ...++...........+.|+|||++|+..+.+ ..|.++|+.++
T Consensus 283 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D---~~i~iwd~~~~ 328 (435)
T 4e54_B 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK---SEIRVYSASQW 328 (435)
T ss_dssp CCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS---SCEEEEESSSS
T ss_pred ccccceEEEeeeccccccceeECCCCCeeEEEcCC---CEEEEEECCCC
Confidence 54 22222111112223457899999998766543 35888888774
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.011 Score=63.02 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=103.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccc------------------------------
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVS------------------------------ 170 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~------------------------------ 170 (726)
.+..++|||||++||... .+| .|.+||+++++.+.... ...+.
T Consensus 149 ~V~sv~fspdg~~lasgs-~Dg----~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGT-SSA----EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred cEEEEEECCCCCEEEEEE-CCC----eEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceee
Confidence 467789999999998875 445 38999999887544211 11111
Q ss_pred -----------eeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-c--eeEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 171 -----------NIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-E--DALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 171 -----------~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~--~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
.+.|+|+|+.|+....+ ..+.++++.++. . ........ ......+.|+|++..++.....
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D-----~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~~p~~~~~la~~~g 297 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCPWQSNVLATGGG 297 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCCSSCSCCSEEECCC-SSCEEEEEECTTCTTEEEEEEC
T ss_pred EEecccccceeeeeecCCCCeeeeeecc-----ccceEEeeccccccceeeeeeccc-CCceeeeeeCCCcccEEEEEee
Confidence 23344444433332211 234455554432 1 11111111 1122357889988877666544
Q ss_pred CCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCC
Q 004866 237 TTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQG 316 (726)
Q Consensus 237 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 316 (726)
.....|.++|+.++. ....+..........+.++++.++..+.... ..|...+.. + ......+ .. ..
T Consensus 298 s~D~~I~iwd~~t~~-~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d-------~~I~iwd~~-~--~~~v~~l-~g-H~ 364 (420)
T 4gga_A 298 TSDRHIRIWNVCSGA-CLSAVDAHSQVCSILWSPHYKELISGHGFAQ-------NQLVIWKYP-T--MAKVAEL-KG-HT 364 (420)
T ss_dssp TTTCEEEEEETTTTE-EEEEEECSSCEEEEEEETTTTEEEEEECTTT-------CCEEEEETT-T--CCEEEEE-CC-CS
T ss_pred cCCCEEEEEeCCccc-cceeeccccceeeeeecCCCCeEEEEEecCC-------CEEEEEECC-C--CcEEEEE-cC-CC
Confidence 445678889998742 2223333333334456778888777654221 224445554 2 1122222 22 23
Q ss_pred ceEEEEeeeC-CEEEEEEEeCCeeEEEEEec
Q 004866 317 LVVEDVDFCK-THMALILREGRTYRLCSVSL 346 (726)
Q Consensus 317 ~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l 346 (726)
..+..+.+.. +.++++...+|.-+ ++++
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~tvr--iWdv 393 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADETLR--LWRC 393 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEE--EECC
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEE--EEEC
Confidence 3466666553 34566777777544 4554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0056 Score=63.17 Aligned_cols=198 Identities=10% Similarity=0.023 Sum_probs=106.3
Q ss_pred EeeceeeCCC---CCEEEEEEeCCCCcEEEEEEEECCCCc-eecccc--cccccee------EEecCCCEEEEEEecCCC
Q 004866 123 YEELSEVSPD---HKFLAYTMYDKDNDYFTLSVRNLNSGA-LCSKPQ--AVRVSNI------AWAKDGQALIYVVTDQNK 190 (726)
Q Consensus 123 ~~~~~~~SPD---G~~la~~~~~~g~e~~~l~v~dl~tg~-~~~~~~--~~~~~~~------~WspDg~~l~y~~~~~~~ 190 (726)
.+..++|+|| |++|+... .+| .|.++|+.+++ ...... ...+..+ +|+||++.|+....+
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d--- 138 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGD-FGG----NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD--- 138 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEE-TTS----CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT---
T ss_pred cEEEEEEcCCCCCCceEEEec-CCC----eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC---
Confidence 3567789999 68887764 455 39999999887 332211 2334455 467899988766432
Q ss_pred CCceEEEEEcCCCCceeEEeeecCC---ceEEEEE----EcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc
Q 004866 191 RPYQIYCSIIGSTDEDALLLEESNE---NVYVNIR----HTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL 263 (726)
Q Consensus 191 ~~~~l~~~~l~t~~~~~lv~~~~d~---~~~~~~~----~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 263 (726)
..|.++++.++......+..... .....+. +++++++|+....+ ..|+++|+.++ ...........
T Consensus 139 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~--~~~~~~~~~~~ 211 (357)
T 3i2n_A 139 --GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN---GDIKLFDLRNM--ALRWETNIKNG 211 (357)
T ss_dssp --SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---SEEEEEETTTT--EEEEEEECSSC
T ss_pred --CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---CeEEEEECccC--ceeeecCCCCc
Confidence 36888888776522223322111 1122333 78999998876653 36899999873 33333322232
Q ss_pred e-EEeeee---cCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCC--EEEEEEEeCC
Q 004866 264 A-HCIVEH---HEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKT--HMALILREGR 337 (726)
Q Consensus 264 ~-~~~~~~---~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~--~lv~~~~~~g 337 (726)
+ ...+++ +++.|+..+..+ ..+++.+... .. ...+...........+..+.+..+ .++++...+|
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEG-------KFHVFDMRTQ-HP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG 282 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTT-------EEEEEEEEEE-ET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred eEEEEcCCCCCCCCEEEEECCCC-------eEEEEeCcCC-Cc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence 2 334556 677766654322 2344443321 10 111111011122345666666553 3677777777
Q ss_pred eeEEEEE
Q 004866 338 TYRLCSV 344 (726)
Q Consensus 338 ~~~l~~~ 344 (726)
.-.++-+
T Consensus 283 ~i~iwd~ 289 (357)
T 3i2n_A 283 GLHLWKY 289 (357)
T ss_dssp EEEEEEE
T ss_pred cEEEeec
Confidence 5555443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0015 Score=67.89 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=72.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee--cccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC--SKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~--~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++||... .+| .|+++|+.+++.. .... ...+..++|+|||+.|+... +. .|.++
T Consensus 172 ~i~~~~~~pdg~~lasg~-~dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iw 240 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYS-PDG----ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-----TVVCF 240 (343)
T ss_dssp CCCEEEECTTSCEEEEEC-TTS----CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-----BEEEE
T ss_pred ceEEEEECCCCCEEEEEc-CCC----EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEE
Confidence 356678999999998764 344 4999999999765 2222 34567899999999887764 21 68888
Q ss_pred EcCCCCceeEEeeecCCceE---EEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 199 IIGSTDEDALLLEESNENVY---VNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~---~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
|+.+......+..-...... ..+.|+|||++|+..+..... +.+++...
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~--i~v~~~~~ 292 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS--LTIYKFDK 292 (343)
T ss_dssp ETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTE--EEEEEECT
T ss_pred EcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCc--EEEEEEcc
Confidence 98776421101000001111 237899999999876653333 45555544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0068 Score=65.06 Aligned_cols=200 Identities=9% Similarity=0.008 Sum_probs=108.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC----------Cceecc-cc-ccccceeEEecCCCEEEEEEecCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS----------GALCSK-PQ-AVRVSNIAWAKDGQALIYVVTDQNK 190 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t----------g~~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~ 190 (726)
.+..++|+|++..++++....| .|+++|+.+ .+.... .. ...+..++|+|+++.++++...
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--- 202 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSS----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD--- 202 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSS----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT---
T ss_pred cEEEEEECCCCCcEEEEECCCC----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC---
Confidence 4667789998555555544555 399999986 222211 11 2345789999999855555332
Q ss_pred CCceEEEEEcCCCC-c-e----eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCC--CCeEEeeccCC
Q 004866 191 RPYQIYCSIIGSTD-E-D----ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPF--SGLTLIWECEG 262 (726)
Q Consensus 191 ~~~~l~~~~l~t~~-~-~----~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~ 262 (726)
...|.++++.++. . . ...+.... .....+.|+|++..++++... ...|+++|+.++. .....+.....
T Consensus 203 -dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 203 -DHTICLWDINATPKEHRVIDAKNIFTGHT-AVVEDVAWHLLHESLFGSVAD--DQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp -TSCEEEEETTSCCBGGGEEECSEEECCCS-SCEEEEEECSSCTTEEEEEET--TSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred -CCeEEEEeCCCCCCCCceeccceeecCCC-CCEeeeEEeCCCCCEEEEEeC--CCeEEEEECCCCCCCcceeEeecCCC
Confidence 2368888987643 1 1 11222222 223468899955544444432 2468888987642 22333433333
Q ss_pred ce-EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCee
Q 004866 263 LA-HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTY 339 (726)
Q Consensus 263 ~~-~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~ 339 (726)
.+ ...+++++..+++....++ .|..+++. ... .....+..+ ...+..+.+. ++.++++...+|.-
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg--------~v~vwd~~-~~~-~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADK--------TVALWDLR-NLK-LKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTS--------EEEEEETT-CTT-SCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCC--------eEEEEeCC-CCC-CCeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 33 3356677776666555432 25555554 211 122323222 3345555554 45678888777754
Q ss_pred EEEEEecC
Q 004866 340 RLCSVSLP 347 (726)
Q Consensus 340 ~l~~~~l~ 347 (726)
. ++++.
T Consensus 347 ~--iwd~~ 352 (430)
T 2xyi_A 347 H--VWDLS 352 (430)
T ss_dssp E--EEEGG
T ss_pred E--EEeCC
Confidence 4 45554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0057 Score=64.83 Aligned_cols=120 Identities=12% Similarity=0.034 Sum_probs=67.0
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc-----ccceeEEecCCCEEEEEEe-----------cCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV-----RVSNIAWAKDGQALIYVVT-----------DQN 189 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~-----~~~~~~WspDg~~l~y~~~-----------~~~ 189 (726)
.+..+|||=+|....+..|+....|.++|.+|++.+.....+ ....+.|+||++.+ |++. ...
T Consensus 142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m-vsS~wg~p~~~~~g~~~~ 220 (462)
T 2ece_A 142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL-VSSEWAVPNTIEDGLKLE 220 (462)
T ss_dssp EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE-EECBCCCHHHHTTCCCTT
T ss_pred ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE-EEccCcCccccccccchh
Confidence 346899992232333334444457999999999876533211 12358999999955 4432 000
Q ss_pred ----CCCceEEEEEcCCCC-ceeEEeeec-CCceEEEEEEcCCCcEEEEEEc---CCCceEEEEEe
Q 004866 190 ----KRPYQIYCSIIGSTD-EDALLLEES-NENVYVNIRHTKDFHFVCVHTF---STTSSKVFLIN 246 (726)
Q Consensus 190 ----~~~~~l~~~~l~t~~-~~~lv~~~~-d~~~~~~~~~s~Dg~~l~~~~~---~~~~~~l~~~d 246 (726)
....+|..+++.+.+ ...+-..+. ..+..+.+.++|||+++++... ...++.|+++.
T Consensus 221 ~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~ 286 (462)
T 2ece_A 221 HLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF 286 (462)
T ss_dssp THHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred hhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence 135689999998754 222211111 1111122345999999988765 11234555443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.078 Score=52.40 Aligned_cols=186 Identities=8% Similarity=0.035 Sum_probs=108.6
Q ss_pred CCEEEEEEeCCCCcEEEEEEEECCCCceecc-----cc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 133 HKFLAYTMYDKDNDYFTLSVRNLNSGALCSK-----PQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 133 G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~-----~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
|.+|.|+.. ..|+.++++++..... .. ......++|+++++.||++.. ....|+++++.+...
T Consensus 1 ~~~l~~~~~------~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~----~~~~I~~~~~~g~~~ 70 (267)
T 1npe_A 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI----SEPSIGRASLHGGEP 70 (267)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET----TTTEEEEEESSSCCC
T ss_pred CcEEEEEcC------CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC----CCCEEEEEecCCCCc
Confidence 456777632 2589999987654211 11 123467899999999999853 235899999876543
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCEEEEEecCcc
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGFLYLFTDAAK 283 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~l~~~t~~~~ 283 (726)
..++ . .....-.++.++++++.|++.... ...|+++++++. ..+.+.... ......++++++.||+......
T Consensus 71 ~~~~-~-~~~~~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~g~--~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 71 TTII-R-QDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGT--QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp EEEE-C-TTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSC--SCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred EEEE-E-CCCCCccEEEEEecCCeEEEEECC--CCEEEEEEcCCC--CEEEEEECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 3222 2 111122467889999898887653 357888998752 233333221 1223456677888887643211
Q ss_pred cCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecC
Q 004866 284 EGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
+..|++++.+ . ...+.+. ...-....++.+. +++||+.... ..+|.+++++
T Consensus 145 ------~~~I~~~~~d-g---~~~~~~~-~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~ 197 (267)
T 1npe_A 145 ------NPKIETSHMD-G---TNRRILA-QDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPA 197 (267)
T ss_dssp ------SCEEEEEETT-S---CCCEEEE-CTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETT
T ss_pred ------CcEEEEEecC-C---CCcEEEE-ECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecC
Confidence 2467888776 2 1223232 2222335566665 4677776543 3478888875
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00043 Score=75.24 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=75.6
Q ss_pred CccEEEEEcCCCCCCCCccch--HHHHHHHH-CCcEEEEEccCCCCCCCCc---cccc--ccccCCCCcHHHHHHHHHHH
Q 004866 493 QNPGLLHGHGAYGELLDKRWR--SELKSLLD-RGWVVAFADVRGGGGGGKK---WHHD--GRRTKKLNSIKDFISCARFL 564 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~--~~~~~l~~-~G~~v~~~d~RG~g~~g~~---~~~~--~~~~~~~~~~~D~~~~~~~l 564 (726)
..|++|++-|. +.. ..... ..+..||+ .|-.+++...|-.|++-.- -.+. -+...-...+.|+...++++
T Consensus 42 ~gPIfl~~gGE-g~~-~~~~~~~g~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~~~ 119 (472)
T 4ebb_A 42 EGPIFFYTGNE-GDV-WAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRAL 119 (472)
T ss_dssp TCCEEEEECCS-SCH-HHHHHHCHHHHHHHHHHTCEEEEECCTTSTTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-ccc-cccccCccHHHHHHHHhCCeEEEEecccccCCcCCCCCCccccccccCCHHHHHHHHHHHHHHH
Confidence 36898888542 211 11111 12334554 5999999999988765221 0110 11112234678888888888
Q ss_pred HHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 565 IEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 565 ~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
...-.....++.++|+||||.|++++-..+|++|.++++.++++
T Consensus 120 k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 120 RRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 76533445789999999999999999999999999999988654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.01 Score=73.17 Aligned_cols=144 Identities=14% Similarity=0.039 Sum_probs=89.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||... .+| .|.+||+.+++.+.... ...+..++|+|||+.|+....+ ..|.++++
T Consensus 617 ~v~~~~~s~~~~~l~s~~-~d~----~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~ 686 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCG-ADK----TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSAD-----KKVKIWDS 686 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred cEEEEEECCCCCEEEEEe-CCC----eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEC
Confidence 466778999999998764 444 49999999998665322 3467789999999988776432 36889999
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t 279 (726)
.+++. ...+...... ...+.|+|++...++.+.. ....|.++|+.++. ....+......+ ...++++++.|+..+
T Consensus 687 ~~~~~-~~~~~~~~~~-v~~~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 687 ATGKL-VHTYDEHSEQ-VNCCHFTNKSNHLLLATGS-NDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp TTCCE-EEEEECCSSC-EEEEEECSSSSCCEEEEEE-TTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred CCCce-EEEEcCCCCc-EEEEEEecCCCceEEEEEe-CCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 87752 2233322222 3457899965533322221 12357888887742 222333333333 235677888766655
Q ss_pred c
Q 004866 280 D 280 (726)
Q Consensus 280 ~ 280 (726)
.
T Consensus 763 ~ 763 (1249)
T 3sfz_A 763 A 763 (1249)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.025 Score=61.02 Aligned_cols=187 Identities=11% Similarity=-0.025 Sum_probs=112.7
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
.++|+|++|+... .+| .|+++|+.+++.+.... ...+..+.|+||++.|+....+ ..|+++++.+++.
T Consensus 275 ~~~~~~~~l~~~~-~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~ 344 (464)
T 3v7d_B 275 TVSGHGNIVVSGS-YDN----TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGEL 344 (464)
T ss_dssp EEEEETTEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEE
T ss_pred EEcCCCCEEEEEe-CCC----eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcE
Confidence 4689999988774 444 39999999987665322 3456789999999988766433 3688889877642
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccC
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEG 285 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~ 285 (726)
...+...... ...+.++ +++|+..+.+ ..|.++|+.++. ...............+++++..++..+ ++
T Consensus 345 -~~~~~~h~~~-v~~~~~~--~~~l~s~s~d---g~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~--dg-- 412 (464)
T 3v7d_B 345 -MYTLQGHTAL-VGLLRLS--DKFLVSAAAD---GSIRGWDANDYS-RKFSYHHTNLSAITTFYVSDNILVSGS--EN-- 412 (464)
T ss_dssp -EEEECCCSSC-EEEEEEC--SSEEEEEETT---SEEEEEETTTCC-EEEEEECTTCCCEEEEEECSSEEEEEE--TT--
T ss_pred -EEEEeCCCCc-EEEEEEc--CCEEEEEeCC---CcEEEEECCCCc-eeeeecCCCCccEEEEEeCCCEEEEec--CC--
Confidence 2222222222 2345554 6777655543 358888988743 122222222222345667777665544 21
Q ss_pred CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEec
Q 004866 286 QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l 346 (726)
.|...++. + ++............+..+.+.++.+++....+|...+.++|+
T Consensus 413 ------~i~iwd~~-~---g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 413 ------QFNIYNLR-S---GKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp ------EEEEEETT-T---CCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred ------eEEEEECC-C---CcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEeec
Confidence 24445554 2 111110112234567788888899999999999888887764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0049 Score=62.47 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=85.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCC------CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKD------NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g------~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
....+.++|||+..+-...... .....|+.++.+ |+...+.. ......++|+|||+.||++... ...|
T Consensus 99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~----~~~i 173 (297)
T 3g4e_A 99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSL----SYSV 173 (297)
T ss_dssp EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGG----GTEE
T ss_pred CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCC----CCcE
Confidence 4566789999994432322110 123468888875 44333221 2234579999999999887532 3478
Q ss_pred EEEEcC--CCC-c-eeEEeeecC-CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeee
Q 004866 196 YCSIIG--STD-E-DALLLEESN-ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVE 269 (726)
Q Consensus 196 ~~~~l~--t~~-~-~~lv~~~~d-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~ 269 (726)
+++++. ++. . ..++..... ....-++.+++||+ |++..... ..|+++|.+++. ....+..... .....+.
T Consensus 174 ~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~--~~v~~~d~~tG~-~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 174 DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNG--GRVIRLDPVTGK-RLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETT--TEEEEECTTTCC-EEEEEECSSSBEEEEEEE
T ss_pred EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCC--CEEEEEcCCCce-EEEEEECCCCCceEEEEe
Confidence 888873 443 2 122222111 12334678899995 55554432 468999987632 2233332222 2234455
Q ss_pred -ecCCEEEEEecCc
Q 004866 270 -HHEGFLYLFTDAA 282 (726)
Q Consensus 270 -~~g~~l~~~t~~~ 282 (726)
++++.||+.+...
T Consensus 250 g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 250 GKNYSEMYVTCARD 263 (297)
T ss_dssp SGGGCEEEEEEBCT
T ss_pred CCCCCEEEEEcCCc
Confidence 7888999988753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0074 Score=67.64 Aligned_cols=197 Identities=9% Similarity=-0.011 Sum_probs=108.8
Q ss_pred eeceeeCC--CCCEEEEEEeCCCCcEEEEEEEECCCC------ceecc--c--cccccceeEEecCCCEEEEEEecCCCC
Q 004866 124 EELSEVSP--DHKFLAYTMYDKDNDYFTLSVRNLNSG------ALCSK--P--QAVRVSNIAWAKDGQALIYVVTDQNKR 191 (726)
Q Consensus 124 ~~~~~~SP--DG~~la~~~~~~g~e~~~l~v~dl~tg------~~~~~--~--~~~~~~~~~WspDg~~l~y~~~~~~~~ 191 (726)
+..++||| ||++||... .+| .|.+||+.++ +.... . ....+..++|+|||+.|+....+. ..
T Consensus 67 v~~~~~sp~~~~~~l~s~~-~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~ 140 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGD-ESG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR-DN 140 (615)
T ss_dssp EEEEEECSSTTCCEEEEEE-TTS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS-SC
T ss_pred EEEEEECcCCCCCEEEEec-CCC----EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC-CC
Confidence 66788999 999998874 344 4899999766 22211 1 134567899999999988875432 22
Q ss_pred CceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC---ce-EEe
Q 004866 192 PYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG---LA-HCI 267 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~-~~~ 267 (726)
...|+.++.+ . ....+.... .....+.|+|+++++++..... ..+.++|+.+.. ....+..... .+ ...
T Consensus 141 ~~~v~~~d~~--~-~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d--~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 141 FGVFISWDSG--N-SLGEVSGHS-QRINACHLKQSRPMRSMTVGDD--GSVVFYQGPPFK-FSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp SEEEEETTTC--C-EEEECCSCS-SCEEEEEECSSSSCEEEEEETT--TEEEEEETTTBE-EEEEECSSSCTTCCEEEEE
T ss_pred ccEEEEEECC--C-cceeeecCC-ccEEEEEECCCCCcEEEEEeCC--CcEEEEeCCCcc-eeeeecccCCCCceEEEEE
Confidence 3467766632 2 122222222 2234688999999555554432 467778876621 1222322222 22 235
Q ss_pred eeec-CCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec---CCCceEEEEeeeCCEEEEEEEeCCeeEEEE
Q 004866 268 VEHH-EGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID---DQGLVVEDVDFCKTHMALILREGRTYRLCS 343 (726)
Q Consensus 268 ~~~~-g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~---~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~ 343 (726)
++++ ++.|+..+..+ .|..+++. . .+....+.. .....+..+.+..+.++++...+|. +.+
T Consensus 214 ~~~~~~~~l~~~~~dg---------~i~vwd~~-~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~--i~~ 278 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDR---------KISCFDGK-S---GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT--IRV 278 (615)
T ss_dssp ECSTTCCEEEEEETTC---------CEEEEETT-T---CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE--EEE
T ss_pred ECCCCCCEEEEEeCCC---------eEEEEECC-C---CCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCc--EEE
Confidence 6677 66666554422 24455554 2 222222211 2234455555544455556665654 556
Q ss_pred EecCC
Q 004866 344 VSLPL 348 (726)
Q Consensus 344 ~~l~~ 348 (726)
+++.+
T Consensus 279 wd~~~ 283 (615)
T 1pgu_A 279 WDVTT 283 (615)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 67654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.06 Score=55.00 Aligned_cols=197 Identities=8% Similarity=-0.012 Sum_probs=115.9
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC----Cceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS----GALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t----g~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.++.|+++++.|.++ |..+. .|+.+++++ .....+.. .....++++.+.++.||++.. ....|.+.
T Consensus 33 ~g~~~d~~~~~ly~~-D~~~~---~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~----~~~~I~~~ 104 (316)
T 1ijq_A 33 VALDTEVASNRIYWS-DLSQR---MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSVA 104 (316)
T ss_dssp EEEEEETTTTEEEEE-ETTTT---EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEE
T ss_pred EEEEEEeCCCEEEEE-ECCCC---cEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC----CCCEEEEE
Confidence 456799999888665 65543 589999987 22221111 224467888888888998743 23478888
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEE
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLY 276 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~ 276 (726)
++.......++ .. ......++++.|++.+|+++... ....|+.+++++ ...+.+.... . .....++++++.||
T Consensus 105 ~~~g~~~~~~~-~~-~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG--~~~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 105 DTKGVKRKTLF-RE-NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp ETTSSSEEEEE-EC-TTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred eCCCCceEEEE-EC-CCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC--CCeEEEEECCCCCceEEEEeccCCEEE
Confidence 88654332333 21 11223467889988999887642 236899999876 2333333221 1 12345677888888
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecC-CCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDD-QGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+.-.. +.+|.+++++ . ...+.++... ......++.+++++||++.. +..+|.+++..+
T Consensus 180 ~~D~~--------~~~I~~~d~d-g---~~~~~~~~~~~~~~~P~giav~~~~ly~~d~--~~~~V~~~~~~~ 238 (316)
T 1ijq_A 180 WVDSK--------LHSISSIDVN-G---GNRKTILEDEKRLAHPFSLAVFEDKVFWTDI--INEAIFSANRLT 238 (316)
T ss_dssp EEETT--------TTEEEEEETT-S---CSCEEEEECTTTTSSEEEEEEETTEEEEEET--TTTEEEEEETTT
T ss_pred EEECC--------CCeEEEEecC-C---CceEEEeecCCccCCcEEEEEECCEEEEEEC--CCCeEEEEeCCC
Confidence 76432 2468888886 2 2233343321 12335677778888887663 345677777543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0082 Score=64.30 Aligned_cols=112 Identities=7% Similarity=0.107 Sum_probs=73.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC-Cceecc--------cc-ccccceeEEecCC-CEEEEEEecCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS-GALCSK--------PQ-AVRVSNIAWAKDG-QALIYVVTDQNKR 191 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t-g~~~~~--------~~-~~~~~~~~WspDg-~~l~y~~~~~~~~ 191 (726)
.+..++|||||++|+.+ + +| .|.+||+.+ ++.... .. ...+..++|+||+ +.|+....+
T Consensus 179 ~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---- 248 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-D-DL----RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK---- 248 (447)
T ss_dssp CCCEEEECTTSSEEEEE-C-SS----EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT----
T ss_pred ceEEEEEcCCCCEEEEe-C-CC----eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC----
Confidence 46678899999999875 3 34 599999984 333321 11 3356789999999 666655432
Q ss_pred CceEEEEEcCCCCc---eeEEeeecCC-----------ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 192 PYQIYCSIIGSTDE---DALLLEESNE-----------NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 192 ~~~l~~~~l~t~~~---~~lv~~~~d~-----------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
..|.++++.++.. ...++..... .....+.|+|||++|+..+. ..|.++|+..
T Consensus 249 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~ 315 (447)
T 3dw8_B 249 -GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNM 315 (447)
T ss_dssp -SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTC
T ss_pred -CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCC
Confidence 3688889877642 1234433322 13456899999999886544 4688888875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.03 Score=57.11 Aligned_cols=142 Identities=9% Similarity=0.033 Sum_probs=83.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCC------EEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQ------ALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~------~l~y~~~~~~~~~~~l 195 (726)
.+..+.|+|||++|+-.. .+| .|.+||+.+.....+.. ...+..+.|+|+++ .|+ +... ...|
T Consensus 109 ~v~~~~~~~~~~~l~s~s-~D~----~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~-s~~~----d~~i 178 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGS-RDK----TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTII-SAGN----DKMV 178 (319)
T ss_dssp CEEEEEECTTSCEEEEEE-TTS----CEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEE-EEET----TSCE
T ss_pred cEEEEEEcCCCCEEEEEe-CCC----eEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEE-EEeC----CCEE
Confidence 466778999999987764 444 38999997654333222 33556788988543 443 3332 2368
Q ss_pred EEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEE
Q 004866 196 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFL 275 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l 275 (726)
.++++.+.+.. ..+..... ....+.++|||++|+..+.+ ..|.++|+.++. ....+..........++|++..+
T Consensus 179 ~~wd~~~~~~~-~~~~~h~~-~v~~~~~sp~g~~l~s~~~d---g~i~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 179 KAWNLNQFQIE-ADFIGHNS-NINTLTASPDGTLIASAGKD---GEIMLWNLAAKK-AMYTLSAQDEVFSLAFSPNRYWL 252 (319)
T ss_dssp EEEETTTTEEE-EEECCCCS-CEEEEEECTTSSEEEEEETT---CEEEEEETTTTE-EEEEEECCSCEEEEEECSSSSEE
T ss_pred EEEECCcchhh-eeecCCCC-cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCc-EEEEecCCCcEEEEEEcCCCCEE
Confidence 88888765421 12222222 23467899999998765543 468888987732 22333322222334567888776
Q ss_pred EEEec
Q 004866 276 YLFTD 280 (726)
Q Consensus 276 ~~~t~ 280 (726)
+..+.
T Consensus 253 a~~~~ 257 (319)
T 3frx_A 253 AAATA 257 (319)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 65543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.022 Score=60.73 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=91.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
...++|+|||+ .|.++..+. .|+++|++++.............++|+||++.||.+.... ...|++++..+.
T Consensus 133 P~~la~d~~g~--lyv~d~~~~---~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~---~~~I~~~d~~~~ 204 (409)
T 3hrp_A 133 MWGIAAVGNNT--VLAYQRDDP---RVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEG---THTVYVYMKASG 204 (409)
T ss_dssp EEEEEECSTTE--EEEEETTTT---EEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSST---TCEEEEEEGGGT
T ss_pred ceEEEEeCCCC--EEEEecCCC---cEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCC---CceEEEEEcCCC
Confidence 44568999998 455565433 5999999998765543222222299999999887764321 127999888655
Q ss_pred CceeEEee-ec-CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEe----eccCC--c-e-EEeeeecCC
Q 004866 204 DEDALLLE-ES-NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLI----WECEG--L-A-HCIVEHHEG 273 (726)
Q Consensus 204 ~~~~lv~~-~~-d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l----~~~~~--~-~-~~~~~~~g~ 273 (726)
.....+-. .. ......+++++|++..|++... ...|+++|..++ ....+ ..... . . ...++++++
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---~~~I~~~d~~~~--~~~~~~~~~~~g~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---NKNFGRFNVKTQ--EVTLIKQLELSGSLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---TCEEEEEETTTC--CEEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---CCcEEEEECCCC--CEEEEecccccCCCCCCccccEEEeCCCC
Confidence 43222200 01 1111224678997777877332 458999999873 33333 11111 1 1 445667678
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.||+.... +..|++++.+
T Consensus 280 ~lyv~d~~--------~~~I~~~~~~ 297 (409)
T 3hrp_A 280 NFYMSDQN--------LSSVYKITPD 297 (409)
T ss_dssp EEEEEETT--------TTEEEEECTT
T ss_pred EEEEEeCC--------CCEEEEEecC
Confidence 88876432 2457888765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.002 Score=70.62 Aligned_cols=183 Identities=8% Similarity=-0.022 Sum_probs=95.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
+..++|||||++||-+++ + .+|. |...++.+. .....+..++++||| .+... ++.++
T Consensus 18 v~sv~~SpDG~~iASas~-D----~TV~--d~~~~~~l~-gh~~~v~~V~FsPdg-------~~~~~--------~~~~~ 74 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFP-D----ISIG--QPKYAKDIN-CNSKNLFHVKEFPLE-------FENKL--------DFELA 74 (588)
T ss_dssp SCCEEECTTSCEEEECSS-S----EEEE--EECCCSCCS-SBGGGTEEEEEECCC-------CCCTT--------TTSCC
T ss_pred EEEEEECCCCCEEEEEcC-C----ceee--cccccceec-CCCccEEEEEECCCC-------CcceE--------EEEeC
Confidence 456789999999986532 1 2344 766665441 124456789999999 12111 12222
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC------ceEEeeeecCCEEEE
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG------LAHCIVEHHEGFLYL 277 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~------~~~~~~~~~g~~l~~ 277 (726)
+... ++.-....+...++|||||++|+..+.++ .+.++|.++ ....+. ... .....++|||+.|+.
T Consensus 75 ~~~~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg---~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 75 QQNG-LLNSQPVCYPRVCKPSPIDDWMAVLSNNG---NVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp CSSC-SSTTSCSCCEEEEEECSSSSCEEEEETTS---CEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred CCce-EeecCCCCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 1111 11111134556789999999999877654 366666432 122222 111 223467899998887
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCC---ceEEee--cCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRT---WESVFI--DDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~v~~--~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
.+..+ ..+|+.+.-. ...... ...+-. ......+..+++..+. ++....++. ++++++..
T Consensus 147 gs~DG-------tVkIWd~~~~-~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~t--VrlWd~~~ 211 (588)
T 2j04_A 147 GNEDG-------ELQFFSIRKN-SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNS--VFSMTVSA 211 (588)
T ss_dssp EETTS-------EEEEEECCCC-TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCC--EEEECCCS
T ss_pred EcCCC-------EEEEEECCCC-ccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCe--EEEEECCC
Confidence 76532 2445544321 000000 122210 1123457788888777 555555543 45556543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.026 Score=55.84 Aligned_cols=190 Identities=7% Similarity=-0.089 Sum_probs=105.1
Q ss_pred eceeeCCCCCEEEEEEeC-CCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKFLAYTMYD-KDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~-~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.++.++||| + +|.++. .| ...|.++|+++|+.+.... .........+.+|+.||.+. +....++++|..+
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~--~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t----~~~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYG--RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVV----WLKNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTT--TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----TTCSEEEEEETTT
T ss_pred ccEEEeCCC-e-EEEECCCCC--CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEE----ecCCEEEEEECCC
Confidence 356789996 4 455432 22 2469999999999776432 22223334455677888774 3456899999987
Q ss_pred CC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce------EEeeeecCCEE
Q 004866 203 TD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA------HCIVEHHEGFL 275 (726)
Q Consensus 203 ~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~------~~~~~~~g~~l 275 (726)
.+ ...+-+. .... ...++||++|+++ + .++.|+.+|.++.. ....+.-...+. +..+. ++.+
T Consensus 96 ~~v~~~i~~g-~~~g----~glt~Dg~~l~vs-~--gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~~nele~~--dg~l 164 (266)
T 2iwa_A 96 LSNIKNFTHQ-MKDG----WGLATDGKILYGS-D--GTSILYEIDPHTFK-LIKKHNVKYNGHRVIRLNELEYI--NGEV 164 (266)
T ss_dssp TEEEEEEECC-SSSC----CEEEECSSSEEEE-C--SSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE--TTEE
T ss_pred CcEEEEEECC-CCCe----EEEEECCCEEEEE-C--CCCeEEEEECCCCc-EEEEEEECCCCcccccceeEEEE--CCEE
Confidence 65 2222222 1222 2467899998864 3 36799999998742 223332211111 11222 4566
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEee-c-----------CCCceEEEEeee--CCEEEEEEEeCCeeEE
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFI-D-----------DQGLVVEDVDFC--KTHMALILREGRTYRL 341 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~-~-----------~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 341 (726)
|.. +... -.|.++|.. + .+....+. + .....+.++... +++++++.. ..+.|
T Consensus 165 yvn-~~~~-------~~V~vID~~-t---g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v 230 (266)
T 2iwa_A 165 WAN-IWQT-------DCIARISAK-D---GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKL 230 (266)
T ss_dssp EEE-ETTS-------SEEEEEETT-T---CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEE
T ss_pred EEe-cCCC-------CeEEEEECC-C---CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeE
Confidence 643 3222 258889886 3 22222221 1 112345677766 356666654 33566
Q ss_pred EEEecC
Q 004866 342 CSVSLP 347 (726)
Q Consensus 342 ~~~~l~ 347 (726)
+.+++.
T Consensus 231 ~~i~l~ 236 (266)
T 2iwa_A 231 FEIKLH 236 (266)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0027 Score=68.42 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=72.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC-----ce------ecccc--ccccceeEEecCCCEEEEEEecCCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG-----AL------CSKPQ--AVRVSNIAWAKDGQALIYVVTDQNK 190 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg-----~~------~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~ 190 (726)
+..++|||||++||.... .|+....|+|||+.++ +. ..... ...+..++|+|++..++.+...+
T Consensus 95 v~~l~~spdg~~lav~~~-sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D-- 171 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMM-SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD-- 171 (434)
T ss_dssp EEEEEECTTSCEEEEEEE-ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT--
T ss_pred ccEEEEcCCCCEEEEEEe-ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC--
Confidence 667889999999987542 2444567999998765 11 11111 33567899999844444443322
Q ss_pred CCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC
Q 004866 191 RPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 248 (726)
Q Consensus 191 ~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 248 (726)
..|+++|+.++.. +............++|||||++|+..+.+ ..|.++|+.
T Consensus 172 --g~v~iwD~~~~~~--~~~~~~~~~~v~~v~wspdg~~lasgs~d---g~v~iwd~~ 222 (434)
T 2oit_A 172 --GSIAVLQVTETVK--VCATLPSTVAVTSVCWSPKGKQLAVGKQN---GTVVQYLPT 222 (434)
T ss_dssp --SCEEEEEESSSEE--EEEEECGGGCEEEEEECTTSSCEEEEETT---SCEEEECTT
T ss_pred --CeEEEEEcCCCcc--eeeccCCCCceeEEEEcCCCCEEEEEcCC---CcEEEEccC
Confidence 3688888876531 11111112234568999999999877654 357888886
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.015 Score=59.57 Aligned_cols=162 Identities=10% Similarity=-0.019 Sum_probs=93.3
Q ss_pred eeceeeCCCCCEEEEEEeCCC---CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKD---NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g---~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+..+.++|||+.++ + +..+ .....|+.+|.++++...+.. ......++|+|||+.||++... ...|++++
T Consensus 137 ~~~i~~d~~g~l~v-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~----~~~i~~~d 210 (333)
T 2dg1_A 137 IDDMVFDSKGGFYF-T-DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT----ANRLHRIA 210 (333)
T ss_dssp EEEEEECTTSCEEE-E-ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG----GTEEEEEE
T ss_pred ccceEECCCCCEEE-E-eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC----CCeEEEEE
Confidence 45668999997543 3 2221 113469999998876554322 2235678999999989887432 24789999
Q ss_pred cCCC-Cc-e----eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-------CceEE
Q 004866 200 IGST-DE-D----ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-------GLAHC 266 (726)
Q Consensus 200 l~t~-~~-~----~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-------~~~~~ 266 (726)
+.+. .. . .............++.+++||+. ++.... ...|+++|.++ .....+.... .....
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~--~~~v~~~d~~g--~~~~~~~~~~~~~g~~~~~~~~ 285 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-YVAMYG--QGRVLVFNKRG--YPIGQILIPGRDEGHMLRSTHP 285 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-EEEEET--TTEEEEECTTS--CEEEEEECTTGGGTCSCBCCEE
T ss_pred ecCCCcCcccccceEEEecCCCCCCCceEECCCCCE-EEEEcC--CCEEEEECCCC--CEEEEEEcCCCccccccCcceE
Confidence 8542 21 1 11111111122345788999974 443321 24688888743 2333343222 12234
Q ss_pred eeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 267 IVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 267 ~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.++++++.||+.++.+.. .....|++++..
T Consensus 286 ~~~~dg~~L~v~~~~g~~---~~~~~l~~~~~~ 315 (333)
T 2dg1_A 286 QFIPGTNQLIICSNDIEM---GGGSMLYTVNGF 315 (333)
T ss_dssp EECTTSCEEEEEEECGGG---TCCEEEEEEECS
T ss_pred EECCCCCEEEEEeCccCC---CCCceEEEEecc
Confidence 456788889988875421 123578888875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.40 E-value=0.11 Score=52.78 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=68.5
Q ss_pred EeeceeeCCCC-CEEEEEEeCCCCcEEEEEEEECCCCceec---c---cc-ccccceeEEecCCCEEEEEEecCCCCCce
Q 004866 123 YEELSEVSPDH-KFLAYTMYDKDNDYFTLSVRNLNSGALCS---K---PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SPDG-~~la~~~~~~g~e~~~l~v~dl~tg~~~~---~---~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 194 (726)
.+..++||||+ ++|| +...+| .|.|||+.+++... . .. ...+..+.|+|||+.|+-...+ ..
T Consensus 40 ~V~~v~~sp~~~~~l~-S~s~D~----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-----~~ 109 (340)
T 4aow_A 40 WVTQIATTPQFPDMIL-SASRDK----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-----GT 109 (340)
T ss_dssp CEEEEEECTTCTTEEE-EEETTS----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred CEEEEEEeCCCCCEEE-EEcCCC----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-----cc
Confidence 57788999985 5554 444555 39999998765321 1 11 2356789999999988765433 35
Q ss_pred EEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 195 IYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 195 l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
|+.++........ ... ..........+++++++|+..+.+ ..+.++|+..
T Consensus 110 i~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~s~s~d---~~~~~~d~~~ 159 (340)
T 4aow_A 110 LRLWDLTTGTTTR-RFV-GHTKDVLSVAFSSDNRQIVSGSRD---KTIKLWNTLG 159 (340)
T ss_dssp EEEEETTTTEEEE-EEE-CCSSCEEEEEECTTSSCEEEEETT---SCEEEECTTS
T ss_pred ceEEeecccceee-eec-CCCCceeEEEEeecCccceeecCC---CeEEEEEeCC
Confidence 7777776553211 111 122223346778999988755443 2466667654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.058 Score=55.49 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=86.0
Q ss_pred EeeceeeCCC---CCEEEEEEeCCCCcEEEEEEEECCC-Cceecccc---ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPD---HKFLAYTMYDKDNDYFTLSVRNLNS-GALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPD---G~~la~~~~~~g~e~~~l~v~dl~t-g~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.+..++|||| |++||... .+| .|++||+.+ +....... ...+..++|+||++.|+....+ ..|
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v 110 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGS-WAN----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-----KTA 110 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEE-TTS----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEE
T ss_pred ceEEEEEcCCCCCceEEEEEC-CCC----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----CcE
Confidence 5777899999 58877764 444 499999998 54432221 3467789999999988766432 378
Q ss_pred EEEEcCCCCceeEEeeecCCceEEEEEE--cCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCC
Q 004866 196 YCSIIGSTDEDALLLEESNENVYVNIRH--TKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEG 273 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~~~~~~~~--s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~ 273 (726)
.++++.++.... +.. ... ....+.| ++++++|+..+.+ ..|+++|+.++. ....+.... ....+...+.
T Consensus 111 ~iwd~~~~~~~~-~~~-~~~-~v~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~-~~~~~~~~~--~~~~~~~~~~ 181 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQ-HDA-PVKTIHWIKAPNYSCVMTGSWD---KTLKFWDTRSSN-PMMVLQLPE--RCYCADVIYP 181 (368)
T ss_dssp EEEETTTTEEEE-EEE-CSS-CEEEEEEEECSSCEEEEEEETT---SEEEEECSSCSS-CSEEEECSS--CEEEEEEETT
T ss_pred EEEEcCCCCcee-ecc-ccC-ceEEEEEEeCCCCCEEEEccCC---CcEEEEECCCCc-EEEEEecCC--CceEEEecCC
Confidence 888988764222 222 222 2345677 9999988766553 368899987743 233333222 2223344455
Q ss_pred EEEEEec
Q 004866 274 FLYLFTD 280 (726)
Q Consensus 274 ~l~~~t~ 280 (726)
.+++.+.
T Consensus 182 ~~~~~~~ 188 (368)
T 3mmy_A 182 MAVVATA 188 (368)
T ss_dssp EEEEEEG
T ss_pred eeEEEeC
Confidence 5555444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.007 Score=70.28 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=74.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce--ecccc--ccccceeEEecC--CCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL--CSKPQ--AVRVSNIAWAKD--GQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~--~~~~~--~~~~~~~~WspD--g~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++||.+. .+| .|.|||+.++.. ..... ...+..+.|+|+ ++.|+....+ ..|+
T Consensus 11 ~V~~l~~s~dg~~latg~-~dg----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCS-SDK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEE-TTT----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEE
T ss_pred eeEEEEECCCCCeEEEEE-CCC----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEE
Confidence 466778999999988774 445 489999885432 22111 345678999998 8877666433 3577
Q ss_pred EEEcCCCC-ceeEEeeecCCceEEEEEEcCC--CcEEEEEEcCCCceEEEEEeCCCC
Q 004866 197 CSIIGSTD-EDALLLEESNENVYVNIRHTKD--FHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 197 ~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
++++.++. .....+.... .....+.|+|+ |+.++..+.+ ..|.++|+.++
T Consensus 81 vwd~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~d---g~I~vwdl~~~ 133 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKEN 133 (753)
T ss_dssp EEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT---SEEEEEECCSS
T ss_pred EEECCCCcccccccccCCC-CCeEEEEECCCCCCCEEEEEeCC---CcEEEEEeecC
Confidence 77877654 1222222222 22346889999 8888776653 36888888764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.003 Score=64.33 Aligned_cols=147 Identities=10% Similarity=0.037 Sum_probs=83.9
Q ss_pred eceeeCCCCCEEEEEEeCC-C-------------CcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCC-
Q 004866 125 ELSEVSPDHKFLAYTMYDK-D-------------NDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN- 189 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~-g-------------~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~- 189 (726)
..+.++|||+.. + .|.. | .....|+.+|.++|+...+........++|+|||+.||+......
T Consensus 134 ~~i~~d~dG~l~-~-td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 134 NDLIVARDGAIW-F-TDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CCEEECTTSCEE-E-ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC--
T ss_pred CCEEECCCCCEE-E-eCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcC
Confidence 457899999843 3 2210 1 112569999998887655432223356899999999988753210
Q ss_pred CCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEee
Q 004866 190 KRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIV 268 (726)
Q Consensus 190 ~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~ 268 (726)
.....|+++++..+. ....++.........++.+++||+ |++... ..|++++.++ .....+..........+
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~----~gv~~~~~~g--~~~~~~~~~~~~~~~~f 284 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG----TGVCVFDSDG--QLLGHIPTPGTASNCTF 284 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS----SEEEEECTTS--CEEEEEECSSCCCEEEE
T ss_pred CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC----CcEEEECCCC--CEEEEEECCCceeEEEE
Confidence 112579998886542 111122111111112467789998 544432 2489998854 33334433333333445
Q ss_pred eecCCEEEEEec
Q 004866 269 EHHEGFLYLFTD 280 (726)
Q Consensus 269 ~~~g~~l~~~t~ 280 (726)
+++++.||+.++
T Consensus 285 ~~d~~~L~it~~ 296 (305)
T 3dr2_A 285 DQAQQRLFITGG 296 (305)
T ss_dssp CTTSCEEEEEET
T ss_pred eCCCCEEEEEcC
Confidence 577888888776
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=63.82 Aligned_cols=142 Identities=15% Similarity=0.014 Sum_probs=81.6
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc-cchH----------------HHHHHHHCCcEEEEE
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-RWRS----------------ELKSLLDRGWVVAFA 529 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~----------------~~~~l~~~G~~v~~~ 529 (726)
.+.+....|..+-.|++.... . ....|++|+++||||.+... .... .-..|.+ -..++.+
T Consensus 23 y~~v~~~~~~~lFywf~es~~-~-~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~~-~anvlfi 99 (255)
T 1whs_A 23 YITVDEGAGRSLFYLLQEAPE-D-AQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNK-VANVLFL 99 (255)
T ss_dssp EEEEETTTTEEEEEEEECCCG-G-GCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGGG-TSEEEEE
T ss_pred EEECCCCCCcEEEEEEEEecC-C-CCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccccc-cCCEEEE
Confidence 455555567788877654432 2 34579999999999976432 1100 0012222 2678999
Q ss_pred ccC-CCCCCCCccccccc-ccCCCCcHHHHHHHHHH-HHHcCCCCCCcEEEEEecccHHHHHHHHHc-----CC-CceeE
Q 004866 530 DVR-GGGGGGKKWHHDGR-RTKKLNSIKDFISCARF-LIEKEIVKEHKLAGWGYSAGGLLVAAAINC-----CP-DLFRA 600 (726)
Q Consensus 530 d~R-G~g~~g~~~~~~~~-~~~~~~~~~D~~~~~~~-l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~-----~p-~~f~a 600 (726)
|.+ |.| +...-..... ...-....+|+...++. +.+.+.....++.|+|.||||..+..++.. .+ =-+++
T Consensus 100 DqPvGtG-fSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkG 178 (255)
T 1whs_A 100 DSPAGVG-FSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKG 178 (255)
T ss_dssp CCSTTST-TCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred ecCCCCc-cCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccce
Confidence 954 544 3221111010 01111234555555543 333344455789999999999988776642 11 24789
Q ss_pred EEEeCCcccccc
Q 004866 601 VVLEVPFLDATN 612 (726)
Q Consensus 601 ~v~~~p~~d~~~ 612 (726)
+++..|++|...
T Consensus 179 i~ign~~~d~~~ 190 (255)
T 1whs_A 179 FMVGNGLIDDYH 190 (255)
T ss_dssp EEEEEECCBHHH
T ss_pred EEecCCccCHHH
Confidence 999999988654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.062 Score=61.50 Aligned_cols=239 Identities=9% Similarity=-0.029 Sum_probs=123.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee------cccc-ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC------SKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~------~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.+..++|+||+..+.++...+| .|++||+.++... .+.. ...+..++|+|||+.|+-...+ ..|
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D-----g~v 454 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDK----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD-----GEL 454 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTS----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SEE
T ss_pred eeEEEEecCCCCCEEEEEeCCC----cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----CcE
Confidence 4667789998765555555555 5999999875321 1111 2356779999999988765433 378
Q ss_pred EEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc----e-EEeeee
Q 004866 196 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL----A-HCIVEH 270 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~----~-~~~~~~ 270 (726)
.++++.++.... .+..... ....+.|+||+++|+..+.+ ..|.++|+.+ .....+.....+ + ...+++
T Consensus 455 ~vwd~~~~~~~~-~~~~h~~-~v~~~~~s~~~~~l~s~s~D---~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 455 RLWDLAAGVSTR-RFVGHTK-DVLSVAFSLDNRQIVSASRD---RTIKLWNTLG--ECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEEETTTTEEEE-EEECCSS-CEEEEEECTTSSCEEEEETT---SCEEEECTTS--CEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEEECCCCccee-EEeCCCC-CEEEEEEeCCCCEEEEEeCC---CEEEEEECCC--CcceeeccCCCCCCCcEEEEEEeC
Confidence 889998764222 2222222 23468899999998755543 3466777654 222222221111 1 123445
Q ss_pred cCC-EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCC
Q 004866 271 HEG-FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 271 ~g~-~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
++. .+++....++ . |...++. . ......+.. ....+..+.+.. +.++++...+|. |+++|+.+
T Consensus 528 ~~~~~~l~s~s~d~------~--v~vwd~~-~---~~~~~~~~~-h~~~v~~v~~spdg~~l~sg~~Dg~--i~iwd~~~ 592 (694)
T 3dm0_A 528 NTLQPTIVSASWDK------T--VKVWNLS-N---CKLRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGV--VLLWDLAE 592 (694)
T ss_dssp CSSSCEEEEEETTS------C--EEEEETT-T---CCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSB--CEEEETTT
T ss_pred CCCcceEEEEeCCC------e--EEEEECC-C---CcEEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCe--EEEEECCC
Confidence 553 2333333332 2 4444544 1 222222222 233455666553 456666666765 44566654
Q ss_pred CCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 349 PAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
+. .+. .+.....+..+ .+++++..+... +. ..+..+|+.+++..
T Consensus 593 ~~-----~~~-----~~~~~~~v~~~----~~sp~~~~l~~~-~~----~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 593 GK-----KLY-----SLEANSVIHAL----CFSPNRYWLCAA-TE----HGIKIWDLESKSIV 636 (694)
T ss_dssp TE-----EEE-----CCBCSSCEEEE----EECSSSSEEEEE-ET----TEEEEEETTTTEEE
T ss_pred Cc-----eEE-----EecCCCcEEEE----EEcCCCcEEEEE-cC----CCEEEEECCCCCCh
Confidence 31 111 12222222222 234444433322 21 35888999887653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0033 Score=66.68 Aligned_cols=150 Identities=7% Similarity=-0.057 Sum_probs=80.5
Q ss_pred ceeeCCCCCEEEEEEeCC-------C--------CcEEEEEEEECCCCceecccccc----cccee--EEecCCCEEEEE
Q 004866 126 LSEVSPDHKFLAYTMYDK-------D--------NDYFTLSVRNLNSGALCSKPQAV----RVSNI--AWAKDGQALIYV 184 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~-------g--------~e~~~l~v~dl~tg~~~~~~~~~----~~~~~--~WspDg~~l~y~ 184 (726)
.+.|+||++. +|+++-. | .....|.++|+++++.++....+ ....+ +++|||+.+|.+
T Consensus 192 d~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~ 270 (462)
T 2ece_A 192 DFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN 270 (462)
T ss_dssp CEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred eEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence 4678999994 4655411 0 11236999999998655432221 12223 459999988877
Q ss_pred Ee-cCCCCCceEEEEEcCCCC-ceeEEeeecC-----------------CceEEEEEEcCCCcEEEEEEcCCCceEEEEE
Q 004866 185 VT-DQNKRPYQIYCSIIGSTD-EDALLLEESN-----------------ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 245 (726)
Q Consensus 185 ~~-~~~~~~~~l~~~~l~t~~-~~~lv~~~~d-----------------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 245 (726)
.. .-......|+.+....+. ....+..-+. ...-.++.+|+|||+|+++.... +.|.++
T Consensus 271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~Vavf 348 (462)
T 2ece_A 271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQY 348 (462)
T ss_dssp EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEE
T ss_pred EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEE
Confidence 54 111123455543332222 1111110000 11224577899999998766543 568888
Q ss_pred eCCCCCCCeEEe---ecc-----------C----CceEEeeeecCCEEEEEe
Q 004866 246 NAADPFSGLTLI---WEC-----------E----GLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 246 d~~~~~~~~~~l---~~~-----------~----~~~~~~~~~~g~~l~~~t 279 (726)
|+.++ ..++.+ .-. . ......+++||++||+..
T Consensus 349 dV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 349 DISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 87543 222222 111 0 123356788999887764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.09 Score=52.66 Aligned_cols=233 Identities=11% Similarity=0.005 Sum_probs=119.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++| |||++||... .+| .|+++|+.+++...... ...+..+.|+||++.|+....+ ..|..+++
T Consensus 20 ~v~~~~~-~~~~~l~s~~-~dg----~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~ 88 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVS-RDG----TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD-----TMINGVPL 88 (313)
T ss_dssp CEEEEEE-EETTEEEEEE-TTS----EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-----SCEEEEET
T ss_pred CcEEEEe-cCCCEEEEEE-cCC----cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC-----CeEEEEEe
Confidence 4566778 9999988764 444 59999998887554322 4467789999999988776433 35777777
Q ss_pred CCCCce--eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeee-cCCEEE
Q 004866 201 GSTDED--ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEH-HEGFLY 276 (726)
Q Consensus 201 ~t~~~~--~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~-~g~~l~ 276 (726)
...... ...+...... ...+.+ ++++|+..+.+ ..+.++|.. .....+....... ...+.+ +++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~-i~~~~~--~~~~l~~~~~d---~~i~~~d~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGN-VCSLSF--QDGVVISGSWD---KTAKVWKEG---SLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp TCCTTSCC-CEECCCSSC-EEEEEE--ETTEEEEEETT---SEEEEEETT---EEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred eecCCCCcccchhhcccC-EEEEEe--cCCEEEEEeCC---CCEEEEcCC---cEEEecccCCCceeEEEEccCCCCEEE
Confidence 554311 1122222222 234555 67777655543 357777721 2223333333322 223344 666665
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCccee
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVH 356 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~ 356 (726)
..+..+ ..+++ +.. . ....+.......+..+.+..+..+++...+| .|.++++.+++ .
T Consensus 160 ~~~~d~-------~i~i~--d~~-----~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~-----~ 217 (313)
T 3odt_A 160 TASADK-------TIKLW--QND-----K-VIKTFSGIHNDVVRHLAVVDDGHFISCSNDG--LIKLVDMHTGD-----V 217 (313)
T ss_dssp EEETTS-------CEEEE--ETT-----E-EEEEECSSCSSCEEEEEEEETTEEEEEETTS--EEEEEETTTCC-----E
T ss_pred EEECCC-------CEEEE--ecC-----c-eEEEEeccCcccEEEEEEcCCCeEEEccCCC--eEEEEECCchh-----h
Confidence 554322 23344 332 1 1112222123445555555432255666665 46667765432 1
Q ss_pred ecccccccccC-CCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 357 LKELHPHFLPL-PKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 357 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
+. .+.. ...+..+. +.+++ .+ ++.+ .-..+..+|+.+++..
T Consensus 218 ~~-----~~~~~~~~i~~~~----~~~~~-~l-~~~~---~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 218 LR-----TYEGHESFVYCIK----LLPNG-DI-VSCG---EDRTVRIWSKENGSLK 259 (313)
T ss_dssp EE-----EEECCSSCEEEEE----ECTTS-CE-EEEE---TTSEEEEECTTTCCEE
T ss_pred hh-----hhhcCCceEEEEE----EecCC-CE-EEEe---cCCEEEEEECCCCcee
Confidence 11 1111 11222222 23444 33 2222 2357899998887654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.072 Score=53.60 Aligned_cols=199 Identities=7% Similarity=0.018 Sum_probs=102.6
Q ss_pred EeeceeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceeccc---c-ccccceeEEecC--CCEEEEEEecCCCCCce
Q 004866 123 YEELSEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP---Q-AVRVSNIAWAKD--GQALIYVVTDQNKRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~---~-~~~~~~~~WspD--g~~l~y~~~~~~~~~~~ 194 (726)
.+..++|||+ |++||-.. .+| .|.+||+.+++...+. . ...+..++|+|| |+.|+....+ ..
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s-~D~----~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~ 124 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCS-YDG----KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD-----GK 124 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEE-TTT----EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SE
T ss_pred CeEEEEecCCCcCCEEEEEc-CCC----EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-----Cc
Confidence 4566789874 88877664 444 5999999988532221 1 335678999998 7766655322 36
Q ss_pred EEEEEcCCCC-ceeEEeeecCCceEEEEEEcCC-------------CcEEEEEEcCCCceEEEEEeCCCCCCCeE---Ee
Q 004866 195 IYCSIIGSTD-EDALLLEESNENVYVNIRHTKD-------------FHFVCVHTFSTTSSKVFLINAADPFSGLT---LI 257 (726)
Q Consensus 195 l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~D-------------g~~l~~~~~~~~~~~l~~~d~~~~~~~~~---~l 257 (726)
|.++++.+.. ....++..... ....+.|+|+ +++|+..+.+ . .|.++|+.++..... .+
T Consensus 125 v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-~--~v~lwd~~~~~~~~~~~~~l 200 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-N--LVKIWKYNSDAQTYVLESTL 200 (297)
T ss_dssp EEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC------------CCEEEEEETT-S--CEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceeeeeeecccC-ccceEeecCCcccccccCCCCCCcceEEEEcCC-C--cEEEEEEcCCCceEEEEEEe
Confidence 7888887653 22223322222 2345788887 4565544432 2 355566654322221 22
Q ss_pred eccCCce-EEeeeecC--CEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceE-Eee-cCCCceEEEEeeeC-CEEEE
Q 004866 258 WECEGLA-HCIVEHHE--GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWES-VFI-DDQGLVVEDVDFCK-THMAL 331 (726)
Q Consensus 258 ~~~~~~~-~~~~~~~g--~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-v~~-~~~~~~l~~~~~~~-~~lv~ 331 (726)
......+ ...++|++ +.+++....++ ..+|+.++.. ...|.. ++. ......+..+.+.. +.+++
T Consensus 201 ~~H~~~V~~v~~sp~~~~~~~las~s~D~------~v~iWd~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~la 270 (297)
T 2pm7_B 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDR------TCIIWTQDNE----QGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 270 (297)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEETTS------CEEEEEESST----TSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred cCCCCceEEEEECCCCCCceEEEEEECCC------cEEEEEeCCC----CCccceeeeecccCCCcEEEEEECCCCCEEE
Confidence 2222222 23456665 34444443332 3555554322 123432 221 11223355555443 34555
Q ss_pred EEEeCCeeEEEEEe
Q 004866 332 ILREGRTYRLCSVS 345 (726)
Q Consensus 332 ~~~~~g~~~l~~~~ 345 (726)
+...+|.-+|+..+
T Consensus 271 s~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 271 LSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EEcCCCcEEEEEEC
Confidence 66667766666554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.29 E-value=0.048 Score=55.58 Aligned_cols=195 Identities=14% Similarity=0.028 Sum_probs=100.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..+.|||||++|+... .+| .|++++...+....... ........|+++++.|+....+ ..+.++++
T Consensus 88 ~V~~~~~s~dg~~l~s~~-~d~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~~~d~ 157 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGS-WDG----TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-----KTIKLWNT 157 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-----SCEEEECT
T ss_pred CEEEEEECCCCCEEEEEc-ccc----cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC-----CeEEEEEe
Confidence 466778999999998764 444 48999998876554322 3345567899999888665432 24666666
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEE-EEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVC-VHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLF 278 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~-~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~ 278 (726)
..... ..............+.+++++...+ ++... ...|.++|+.++. ....+......+. ..+++++..|+..
T Consensus 158 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~--d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~ 233 (340)
T 4aow_A 158 LGVCK-YTVQDESHSEWVSCVRFSPNSSNPIIVSCGW--DKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASG 233 (340)
T ss_dssp TSCEE-EEECSSSCSSCEEEEEECSCSSSCEEEEEET--TSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCce-EEEEeccccCcccceEEccCCCCcEEEEEcC--CCEEEEEECCCCc-eeeEecCCCCcEEEEEECCCCCEEEEE
Confidence 54321 1111111112223466777765433 33322 2347778887632 1222222222222 3456777766554
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+. + ..|...++. . ......+.. ...+..+.+..+..++....++. |.++++.+
T Consensus 234 s~-D--------g~i~iwd~~-~---~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~d~~--i~iwd~~~ 286 (340)
T 4aow_A 234 GK-D--------GQAMLWDLN-E---GKHLYTLDG--GDIINALCFSPNRYWLCAATGPS--IKIWDLEG 286 (340)
T ss_dssp ET-T--------CEEEEEETT-T---TEEEEEEEC--SSCEEEEEECSSSSEEEEEETTE--EEEEETTT
T ss_pred eC-C--------CeEEEEEec-c---CceeeeecC--CceEEeeecCCCCceeeccCCCE--EEEEECCC
Confidence 33 2 224445554 1 111111222 22344555544444444555553 55667653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.037 Score=57.00 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=73.5
Q ss_pred EeeceeeCCC----CCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEec-CCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPD----HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAK-DGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPD----G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l 195 (726)
.+..++|||| |++|+.+. .+| .|.++|+.+++.+.... ...+..+.|+| |++.|+....+ ..|
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~-~dg----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d-----g~i 140 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAG-SRG----IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD-----HAL 140 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEE-TTC----EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT-----SCE
T ss_pred cEEEEEeccCCCCCCCEEEEec-CCC----EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC-----CeE
Confidence 3566789999 66776654 444 59999999998665432 34677899999 78777655332 368
Q ss_pred EEEEcCCCCceeEEee--ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 196 YCSIIGSTDEDALLLE--ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~--~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+++++.+++. ...+. .........+.|+||+++|+....++ .|.++|+.+
T Consensus 141 ~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 192 (366)
T 3k26_A 141 RLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH---SLKLWRINS 192 (366)
T ss_dssp EEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSSEEEEEETTS---CEEEEESCS
T ss_pred EEEEeecCeE-EEEecccccccCceeEEEECCCCCEEEEecCCC---CEEEEECCC
Confidence 8889877642 22221 11222345688999999987666432 466666653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.019 Score=58.73 Aligned_cols=111 Identities=8% Similarity=-0.058 Sum_probs=69.5
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC---------Cceecccc-ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS---------GALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t---------g~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+..+.|+| +++|+... .+| .|+++|+.+ ++.+.... ...+..+.|+|++ |+.... .
T Consensus 103 ~v~~l~~~~-~~~l~s~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~-----d 169 (342)
T 1yfq_A 103 GICRICKYG-DDKLIAAS-WDG----LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMN-----N 169 (342)
T ss_dssp CEEEEEEET-TTEEEEEE-TTS----EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEES-----T
T ss_pred ceEEEEeCC-CCEEEEEc-CCC----eEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeC-----C
Confidence 456778999 88887664 444 489999887 65443322 4456789999987 544432 2
Q ss_pred ceEEEEEcCC-CCceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeCCC
Q 004866 193 YQIYCSIIGS-TDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 193 ~~l~~~~l~t-~~~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
..|+++++.+ ..................+.|+| |+++|+..+.. ..+.++++..
T Consensus 170 ~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---g~i~i~~~~~ 225 (342)
T 1yfq_A 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID---GRVAVEFFDD 225 (342)
T ss_dssp TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT---SEEEEEECCT
T ss_pred CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC---CcEEEEEEcC
Confidence 3788999987 44222222222222234678999 99988776653 2455555544
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0028 Score=68.04 Aligned_cols=142 Identities=14% Similarity=-0.014 Sum_probs=79.4
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH----------------HHHHHHCCcEEE
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE----------------LKSLLDRGWVVA 527 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~----------------~~~l~~~G~~v~ 527 (726)
....-.++-.++..+..|++.... . ....|+||++|||||.+....+..+ -..|. +-..++
T Consensus 20 ~~~sGyv~v~~~~~lfy~f~~s~~-~-~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw~-~~~~~l 96 (452)
T 1ivy_A 20 RQYSGYLKSSGSKHLHYWFVESQK-D-PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWN-LIANVL 96 (452)
T ss_dssp CEEEEEEECSTTEEEEEEEECCSS-C-GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGG-GSSEEE
T ss_pred eeeEEEEeeCCCCeEEEEEEEcCC-C-CCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCccc-ccccEE
Confidence 334444555567778777554332 2 2457999999999996531110000 00111 346789
Q ss_pred EEcc-CCCCCCCCccccccccc-CCCCcHHHHHH-HHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH----cCCCceeE
Q 004866 528 FADV-RGGGGGGKKWHHDGRRT-KKLNSIKDFIS-CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN----CCPDLFRA 600 (726)
Q Consensus 528 ~~d~-RG~g~~g~~~~~~~~~~-~~~~~~~D~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~----~~p~~f~a 600 (726)
.+|. +|.|-+ .. ...... .......|+.. ..+|+...+.....++.|+|.||||..+..++. ..+-.+++
T Consensus 97 fiDqP~GtGfS-~~--~~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g 173 (452)
T 1ivy_A 97 YLESPAGVGFS-YS--DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQG 173 (452)
T ss_dssp EECCSTTSTTC-EE--SSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEE
T ss_pred EEecCCCCCcC-Cc--CCCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccce
Confidence 9995 666532 11 111000 00112334433 344554443345578999999999995554443 33456899
Q ss_pred EEEeCCccccc
Q 004866 601 VVLEVPFLDAT 611 (726)
Q Consensus 601 ~v~~~p~~d~~ 611 (726)
+++..|++|..
T Consensus 174 ~~ign~~~d~~ 184 (452)
T 1ivy_A 174 LAVGNGLSSYE 184 (452)
T ss_dssp EEEESCCSBHH
T ss_pred EEecCCccChh
Confidence 99999988753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.006 Score=63.84 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=43.7
Q ss_pred ceeeCCCCCEEEEEEe-----CCCCcEEEEEEEECCCCceeccccc---------cccceeEEecCCCEEEEEEe
Q 004866 126 LSEVSPDHKFLAYTMY-----DKDNDYFTLSVRNLNSGALCSKPQA---------VRVSNIAWAKDGQALIYVVT 186 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~-----~~g~e~~~l~v~dl~tg~~~~~~~~---------~~~~~~~WspDg~~l~y~~~ 186 (726)
.+.+||||++|..+.. ..|.....|.++|+.+++.+..... .....+.+||||++||.+..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~ 143 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEcc
Confidence 4789999999866532 1233356799999999987654321 23467999999999988743
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.21 E-value=0.16 Score=53.71 Aligned_cols=198 Identities=8% Similarity=-0.028 Sum_probs=115.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCc----eecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGA----LCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~----~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
..++.|+++++.|.|+ |..+. .|+.++++++. ...+.. .....+++..+.++.||++.. ....|++
T Consensus 114 ~~~l~~d~~~~~lyws-D~~~~---~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~----~~~~I~~ 185 (400)
T 3p5b_L 114 VVALDTEVASNRIYWS-DLSQR---MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSV 185 (400)
T ss_dssp EEEEEEETTTTEEEEE-ETTTT---EEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET----TTTEEEE
T ss_pred ceEEeeeeccCceEEE-ecCCC---eEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC----CCCeEEE
Confidence 3456789988887555 65543 48888887632 222111 223456777777888998843 2347888
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCEE
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGFL 275 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~l 275 (726)
.++.......++...... -.++++.|.+.+|+++... ....|+++++++. ..+.+.... ......++++++.|
T Consensus 186 ~~~~g~~~~~l~~~~~~~--P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~--~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSK--PRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp ECTTTCSEEEEEECSSCC--EEEEEEETTTTEEEEEECS-SSCCEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCCceEEEEeCCCCC--cceEEEecccCeEEEEeCC-CCCEEEEEeCCCC--ccEEEEECCCCceEEEEEEeCCCEE
Confidence 888765433333222222 2467889988899887643 2357999999763 333333221 12234567788888
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecC-CCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDD-QGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
|+.-. . +.+|.+++++ . ...+.++... .-....++.+++++||++-.. ...|.+++..+
T Consensus 261 Y~aD~-~-------~~~I~~~d~d-G---~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~--~~~V~~~~~~~ 320 (400)
T 3p5b_L 261 YWVDS-K-------LHSISSIDVN-G---GNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--NEAIFSANRLT 320 (400)
T ss_dssp EEEET-T-------TTEEEEEETT-S---CCCEEEEECSSTTSSEEEEEEETTEEEEEESS--SCSEEEEESSS
T ss_pred EEEEC-C-------CCEEEEEeCC-C---CccEEEEeCCCCCCCCEEEEEeCCEEEEecCC--CCeEEEEEcCC
Confidence 88632 2 2468888887 2 2233444321 122345777888988887643 34577776443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.071 Score=53.66 Aligned_cols=196 Identities=11% Similarity=0.024 Sum_probs=100.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccc----------------------------------
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVR---------------------------------- 168 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~---------------------------------- 168 (726)
.+..++|||||++||-.. .+| .|.++|+++++.+.......
T Consensus 69 ~V~~v~~~~~~~~l~sgs-~Dg----~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~ 143 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGT-SSA----EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV 143 (318)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred eEEEEEECCCCCEEEEEE-CCC----cEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeE
Confidence 467789999999998764 344 58999999987644211111
Q ss_pred ---------cceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ce--eEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 169 ---------VSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-ED--ALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 169 ---------~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~--~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
.....|+++++.|+....+ ..|.++++.+++ .. ........ .....+.+++++..++.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 144 ATLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTBSCCSEEECCCC-SCEEEEEECTTSTTEEEEEEC
T ss_pred EEEcCccCceEEEEEcCCCCEEEEEecC-----cceeEEECCCCcccccceeeecccC-CceEEEEecCCCCcEEEEEec
Confidence 1223344444443332211 245556665543 11 11111111 112346778888777666555
Q ss_pred CCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCC
Q 004866 237 TTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQG 316 (726)
Q Consensus 237 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 316 (726)
.....|.+.|..... ...............+.++++.++..+.... ..|...++. + ......+ .. ..
T Consensus 218 ~~~~~i~lwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d-------~~i~iwd~~-~--~~~~~~l-~g-H~ 284 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGA-CLSAVDAHSQVCSILWSPHYKELISGHGFAQ-------NQLVIWKYP-T--MAKVAEL-KG-HT 284 (318)
T ss_dssp TTTCEEEEEETTTCC-EEEEEECSSCEEEEEEETTTTEEEEEECTTT-------CCEEEEETT-T--CCEEEEE-CC-CS
T ss_pred CCCCEEEEEeccccc-ccccccceeeeeeeeecccccceEEEEEcCC-------CEEEEEECC-C--CcEEEEE-cC-CC
Confidence 555667788877632 1222222222233455677887777654221 224455554 2 1112222 22 23
Q ss_pred ceEEEEeeeC-CEEEEEEEeCCeeEEE
Q 004866 317 LVVEDVDFCK-THMALILREGRTYRLC 342 (726)
Q Consensus 317 ~~l~~~~~~~-~~lv~~~~~~g~~~l~ 342 (726)
..+..+.+.. +.++++...+|.-+|+
T Consensus 285 ~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 285 SRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 3466666653 4556677777754443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0093 Score=61.62 Aligned_cols=58 Identities=17% Similarity=0.040 Sum_probs=43.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEE--ecCCCEEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAW--AKDGQALIYVV 185 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~W--spDg~~l~y~~ 185 (726)
.+..++|||||++|+... .+| .|.++|+.+++...... ...+..+.| +||++.|+...
T Consensus 88 ~v~~~~~~~~~~~l~s~~-~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 148 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTAS-CDK----TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS 148 (368)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEE
T ss_pred CEEEEEECcCCCEEEEEc-CCC----cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEcc
Confidence 466788999999998764 444 59999999998766433 446778899 88887776654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.017 Score=60.20 Aligned_cols=104 Identities=9% Similarity=0.066 Sum_probs=63.9
Q ss_pred CEEEEEE-eCCCCcEEEEEEEECCCCc-----------------eecccc-ccccceeEEecCCCEEEEEEecCCCCCce
Q 004866 134 KFLAYTM-YDKDNDYFTLSVRNLNSGA-----------------LCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQ 194 (726)
Q Consensus 134 ~~la~~~-~~~g~e~~~l~v~dl~tg~-----------------~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 194 (726)
+.+|+.. ...| .|+++|+.+++ ...+.. ...+..++|+|||+.|+-...| ..
T Consensus 148 ~~la~~sg~~~g----~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d-----~~ 218 (355)
T 3vu4_A 148 GLLVYSNEFNLG----QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD-----GT 218 (355)
T ss_dssp TEEEEEESSCTT----CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT-----CS
T ss_pred cEEEEeCCCcCc----EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC-----CC
Confidence 5566652 2233 48999999875 111111 3456789999999988765433 24
Q ss_pred -EEEEEcCCCCceeEEeeec-CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 195 -IYCSIIGSTDEDALLLEES-NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 195 -l~~~~l~t~~~~~lv~~~~-d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
|.++++.+++. ...+... .......+.|+|||++|+..+.+ ..|.++|+..+
T Consensus 219 ~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d---~~v~iw~~~~~ 272 (355)
T 3vu4_A 219 IIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDK---WTLHVFEIFND 272 (355)
T ss_dssp EEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETT---CEEEEEESSCC
T ss_pred EEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECC---CEEEEEEccCC
Confidence 88889887652 2223311 22234568999999998876654 45777887653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.32 Score=52.11 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=36.3
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEe--cCCCEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWA--KDGQALIYV 184 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~Ws--pDg~~l~y~ 184 (726)
.+..++|+||+ .|+.+ ..+| .|.++|+.+++...... ...+..+.|+ +|++.|+..
T Consensus 164 ~V~~l~~~~~~-~l~s~-s~dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 164 GVWALKYAHGG-ILVSG-STDR----TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp CEEEEEECSTT-EEEEE-ETTS----CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred CEEEEEEcCCC-EEEEE-eCCC----CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEE
Confidence 46677899999 55443 4555 39999999997654322 3345667777 455555544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.05 E-value=0.28 Score=49.97 Aligned_cols=177 Identities=6% Similarity=-0.024 Sum_probs=104.8
Q ss_pred EEEEEEECCCCc--eecc-ccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEE
Q 004866 148 FTLSVRNLNSGA--LCSK-PQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRH 223 (726)
Q Consensus 148 ~~l~v~dl~tg~--~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~ 223 (726)
..|+.++++++. .... ........+.|.+.+..||++.. ...+|++.++.+.. ...++......+ .++++
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~----~~~~I~r~~~~g~~~~~~~~~~~l~~p--~glav 86 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV----SEEAIKRTEFNKTESVQNVVVSGLLSP--DGLAC 86 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET----TTTEEEEEETTSSSCCCEEEEECCSCC--CEEEE
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC----CCCcEEEEEccCCCceEEEEcCCCCCc--cEEEE
Confidence 469999998874 2111 11234567899998889999843 23489999987654 223333222222 25677
Q ss_pred cCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-cCC-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCC
Q 004866 224 TKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-CEG-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS 301 (726)
Q Consensus 224 s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~ 301 (726)
.+.+..|++.... ...|+++++++. ..+.+.. ... .....+++.++.||+.-... +.+|++++.+ .
T Consensus 87 d~~~g~ly~~d~~--~~~I~~~~~dG~--~~~~l~~~~~~~P~giavdp~~g~ly~td~~~-------~~~I~r~~~d-G 154 (318)
T 3sov_A 87 DWLGEKLYWTDSE--TNRIEVSNLDGS--LRKVLFWQELDQPRAIALDPSSGFMYWTDWGE-------VPKIERAGMD-G 154 (318)
T ss_dssp ETTTTEEEEEETT--TTEEEEEETTSC--SCEEEECSSCSSEEEEEEEGGGTEEEEEECSS-------SCEEEEEETT-S
T ss_pred EcCCCeEEEEECC--CCEEEEEECCCC--cEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-------CCEEEEEEcC-C
Confidence 7778888887653 357889998763 3334432 212 22335667778887754321 3568999886 2
Q ss_pred CCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 302 FPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 302 ~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
..-+.++ ...-....++.+. ++.||+.-. +..+|++++++.
T Consensus 155 ---~~~~~~~-~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG 197 (318)
T 3sov_A 155 ---SSRFIII-NSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDG 197 (318)
T ss_dssp ---CSCEEEE-CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTS
T ss_pred ---CCeEEEE-ECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCC
Confidence 1223333 2222334566665 578887754 445788888763
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.2 Score=54.97 Aligned_cols=102 Identities=9% Similarity=0.032 Sum_probs=63.3
Q ss_pred eeeCC-----CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEE-e-cCCCEEEEEEecCC-------
Q 004866 127 SEVSP-----DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAW-A-KDGQALIYVVTDQN------- 189 (726)
Q Consensus 127 ~~~SP-----DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~W-s-pDg~~l~y~~~~~~------- 189 (726)
+.+|. ||++| |+.+..++ .|.++|+++.+...+.. ......+++ + ||++++|.....+.
T Consensus 90 ~~~s~t~g~~DG~~l-fVnd~~~~---rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFL-FMNDKANT---RVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEETTEEEEEEE-EEEETTTT---EEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred cccCCCCCCcCCCEE-EEEcCCCC---EEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 45666 99986 55565544 58999999998655322 234456776 5 99999977642111
Q ss_pred ------CCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 190 ------KRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 190 ------~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
.....+-.+|..+.+ ..++... .+.. .+..||||+++++++..
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vg-g~pd---~~~~spdGk~~~vt~~~ 215 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLD---NCDADYEGKWAFSTSYN 215 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEES-SCCC---CEEECSSSSEEEEEESC
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeC-CCcc---ceEECCCCCEEEEEecC
Confidence 112356778887754 2222221 1221 35679999999988854
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.15 Score=52.90 Aligned_cols=175 Identities=6% Similarity=-0.028 Sum_probs=106.1
Q ss_pred EEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCc
Q 004866 150 LSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFH 228 (726)
Q Consensus 150 l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~ 228 (726)
|+.+++++.....+.. ......++|.+++..||++.. ....|+++++.+.....++......+ .++++.+.+.
T Consensus 55 I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~----~~~~I~r~~~~g~~~~~~~~~~~~~p--~glavd~~~g 128 (349)
T 3v64_C 55 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV----TLDRILRANLNGSNVEEVVSTGLESP--GGLAVDWVHD 128 (349)
T ss_dssp EEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEECSSCSCC--CEEEEETTTT
T ss_pred eEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEec----cCCceEEEecCCCCceEEEeCCCCCc--cEEEEecCCC
Confidence 8888998776544322 335578899999899999843 23489999987665333332221222 3567788888
Q ss_pred EEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCC
Q 004866 229 FVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRT 306 (726)
Q Consensus 229 ~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~ 306 (726)
.|++.... ...|+++++++. ..+.+.... . .....+++.++.||+.-... ..+|++++.+ . ..
T Consensus 129 ~ly~~d~~--~~~I~~~~~dG~--~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-------~~~I~r~~~d-G---~~ 193 (349)
T 3v64_C 129 KLYWTDSG--TSRIEVANLDGA--HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-------TPRIEASSMD-G---SG 193 (349)
T ss_dssp EEEEEETT--TTEEEEEETTSC--SCEEEECTTCSCEEEEEEETTTTEEEEEECSS-------SCEEEEEETT-S---CS
T ss_pred eEEEEcCC--CCeEEEEcCCCC--ceEEEEeCCCCCcceEEEecCcCeEEEeccCC-------CCEEEEEeCC-C---CC
Confidence 88887653 347899998763 233333221 2 22345667788888764322 2568999887 2 12
Q ss_pred ceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 307 WESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 307 ~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
.+.++ ...-....++.+. ++.||+.-. +..+|.+++++.
T Consensus 194 ~~~~~-~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG 234 (349)
T 3v64_C 194 RRIIA-DTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDG 234 (349)
T ss_dssp CEESC-CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTS
T ss_pred cEEEE-ECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCC
Confidence 22222 2222334566665 578887754 345788888763
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.021 Score=57.52 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=84.7
Q ss_pred eceeeCCCCCEEEEEEeCC-C-------------CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCC
Q 004866 125 ELSEVSPDHKFLAYTMYDK-D-------------NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~-g-------------~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~ 189 (726)
..+.++|||+.++ + +.. | .....|+.++.+ |+...... ......++|+|||+.| ++..
T Consensus 118 ~~i~~d~~G~l~v-t-d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~--- 190 (296)
T 3e5z_A 118 NDVCLAPDGSLWF-S-DPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDT--- 190 (296)
T ss_dssp CCEEECTTSCEEE-E-ECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEET---
T ss_pred CCEEECCCCCEEE-E-CCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeC---
Confidence 4578999998443 2 210 0 001258888887 65443322 2234679999999988 6642
Q ss_pred CCCceEEEEEcC-CCCc--eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEE
Q 004866 190 KRPYQIYCSIIG-STDE--DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHC 266 (726)
Q Consensus 190 ~~~~~l~~~~l~-t~~~--~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~ 266 (726)
....|+++++. ++.. ...++ ........++.+++||+ |++.. ...|++++.++ .....+.........
T Consensus 191 -~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~g--~~~~~~~~~~~~~~~ 261 (296)
T 3e5z_A 191 -GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPDG--DELGRVLTPQTTSNL 261 (296)
T ss_dssp -TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTTS--CEEEEEECSSCCCEE
T ss_pred -CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCCC--CEEEEEECCCCceeE
Confidence 23479999886 2221 12233 22111122467899997 44444 34688998864 333444333322233
Q ss_pred ee-eecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 267 IV-EHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 267 ~~-~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.+ +++++.||+.++. .|++++..
T Consensus 262 ~f~~~d~~~L~v~t~~----------~l~~~~~~ 285 (296)
T 3e5z_A 262 CFGGPEGRTLYMTVST----------EFWSIETN 285 (296)
T ss_dssp EEESTTSCEEEEEETT----------EEEEEECS
T ss_pred EEECCCCCEEEEEcCC----------eEEEEEcc
Confidence 34 4677888887752 27788765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.3 Score=47.83 Aligned_cols=212 Identities=12% Similarity=0.111 Sum_probs=118.0
Q ss_pred CcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCE
Q 004866 104 IEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQA 180 (726)
Q Consensus 104 ~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~ 180 (726)
.-++.++.-.+..-.+ .+++++|+||++.|..+.+.. ..|+.+|+. |+.+.... .....++++.+|++
T Consensus 12 ~y~~~~~~~~l~g~~~---~lSGla~~~~~~~L~aV~d~~----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~- 82 (255)
T 3qqz_A 12 NYHATIDGKEIAGITN---NISSLTWSAQSNTLFSTINKP----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ- 82 (255)
T ss_dssp TCEEEEEEEECTTCCS---CEEEEEEETTTTEEEEEEETT----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-
T ss_pred ceEEEEeceECCCccc---CcceeEEeCCCCEEEEEECCC----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-
Confidence 3456666444443322 478889999999887766653 359999998 76554322 23566789998874
Q ss_pred EEEEEecCCCCCceEEEEEcCCCCc-ee-EEee-----ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC
Q 004866 181 LIYVVTDQNKRPYQIYCSIIGSTDE-DA-LLLE-----ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG 253 (726)
Q Consensus 181 l~y~~~~~~~~~~~l~~~~l~t~~~-~~-lv~~-----~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~ 253 (726)
++.+ .. +..+|++++++.... .. .... .....-+-+++++|+++.|++...+. ...||.++--.....
T Consensus 83 ~~vs-~E---~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 83 FVIS-DE---RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNE 157 (255)
T ss_dssp EEEE-ET---TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSC
T ss_pred EEEE-EC---CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCc
Confidence 4443 32 235788888866542 11 1111 01111246899999999988765443 457888872111112
Q ss_pred eEEeec--------cCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCC--------Cc
Q 004866 254 LTLIWE--------CEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQ--------GL 317 (726)
Q Consensus 254 ~~~l~~--------~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--------~~ 317 (726)
++.+.. ..+-....+++..++||+++... ..|+.+|.. +.......-.. -.
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s--------~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES--------RALQEVTLV-----GEVIGEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT--------TEEEEECTT-----CCEEEEEECSTTGGGCSSCCC
T ss_pred eeeecchhhccccccCCceeEEEcCCCCeEEEEECCC--------CeEEEEcCC-----CCEEEEEEcCCccCCcccccC
Confidence 333211 01112344567788999998854 347777765 12221111111 12
Q ss_pred eEEEEeeeC-CEEEEEEEeCCeeEEEEEe
Q 004866 318 VVEDVDFCK-THMALILREGRTYRLCSVS 345 (726)
Q Consensus 318 ~l~~~~~~~-~~lv~~~~~~g~~~l~~~~ 345 (726)
..+++.+.. +.||++ ++.. .+|++.
T Consensus 225 qpEGia~d~~G~lyIv-sE~n--~~y~f~ 250 (255)
T 3qqz_A 225 QAEGVAMDASGNIYIV-SEPN--RFYRFT 250 (255)
T ss_dssp SEEEEEECTTCCEEEE-ETTT--EEEEEE
T ss_pred CCCeeEECCCCCEEEE-cCCc--eEEEEE
Confidence 457777775 456555 4332 555554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.021 Score=61.32 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=73.3
Q ss_pred EeeceeeCCC-CCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPD-HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPD-G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+..++|+|+ ++.||-.. .+| .|++||+.++....... ...+..++|+|||+.|+....+ ..|.+++
T Consensus 151 ~V~~v~~~p~~~~~las~s-~Dg----~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~d-----g~v~iwd 220 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCL-ADG----SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN-----GTVVQYL 220 (434)
T ss_dssp SEEEEEECSSCTTEEEEEE-TTS----CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETT-----SCEEEEC
T ss_pred ceEEEEECCCCCCEEEEEE-CCC----eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCC-----CcEEEEc
Confidence 3667899998 67776654 455 39999999885432211 3356789999999988876433 2577788
Q ss_pred cCCCCceeEEeeec----C-CceEEEEEEcCCCcEEEEEEcCCC----ceEEEEEeCCC
Q 004866 200 IGSTDEDALLLEES----N-ENVYVNIRHTKDFHFVCVHTFSTT----SSKVFLINAAD 249 (726)
Q Consensus 200 l~t~~~~~lv~~~~----d-~~~~~~~~~s~Dg~~l~~~~~~~~----~~~l~~~d~~~ 249 (726)
+. +.....+.... + ......+.|++++.+++......+ ...+.++++..
T Consensus 221 ~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 221 PT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp TT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred cC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 76 22111111111 1 113457899999998876665432 24577777765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.053 Score=57.85 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=105.3
Q ss_pred EeeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCC---Cceec--cc--cccccceeEEecCCCEEEEEEecCCCCCce
Q 004866 123 YEELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNS---GALCS--KP--QAVRVSNIAWAKDGQALIYVVTDQNKRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~t---g~~~~--~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 194 (726)
.+..++||| ||++||.+. .+| .|.|||+.+ +.... .. ....+..++|+||++.|+....+ ..
T Consensus 65 ~V~~~~~s~~~~~~l~s~s-~dg----~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~ 134 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGS-DQG----VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD-----GQ 134 (437)
T ss_dssp CEEEEEEECSSSCEEEEEE-TTS----EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred ceEEEEECCCCCCEEEEec-CCc----eEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC-----CE
Confidence 577789999 999998774 444 599999887 54221 11 13456789999999988766433 25
Q ss_pred EEEEEcC---CCCcee---------EEeeec-CCceEEE--EEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec
Q 004866 195 IYCSIIG---STDEDA---------LLLEES-NENVYVN--IRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE 259 (726)
Q Consensus 195 l~~~~l~---t~~~~~---------lv~~~~-d~~~~~~--~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 259 (726)
|.++++. +++... +.+... ....... ..+++|+++|+..+.+ ..|.++|+.++. ....+..
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~-~~~~~~~ 210 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL---SRVIIFDIRTLE-RLQIIEN 210 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT---SEEEEEETTTCC-EEEEEEC
T ss_pred EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCe-eeEEEcc
Confidence 6666663 222100 000010 1122222 2367889888776653 468999998742 2333332
Q ss_pred --cCCce-EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee----C-CEEEE
Q 004866 260 --CEGLA-HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC----K-THMAL 331 (726)
Q Consensus 260 --~~~~~-~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~----~-~~lv~ 331 (726)
....+ ...+++++..|+..+..+ .|..+++. . ......+.......+..+.+. . +.+++
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg---------~i~iwd~~-~---~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRG---------IIDIWDIR-F---NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTS---------CEEEEETT-T---TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCC---------eEEEEEcC-C---ccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 12222 234567777666554422 24445554 1 111111111223345555332 2 33555
Q ss_pred EEEeCCeeEEEEEecCC
Q 004866 332 ILREGRTYRLCSVSLPL 348 (726)
Q Consensus 332 ~~~~~g~~~l~~~~l~~ 348 (726)
+...+| .|.++|+.+
T Consensus 278 s~~~dg--~i~iwd~~~ 292 (437)
T 3gre_A 278 GGSSKT--FLTIWNFVK 292 (437)
T ss_dssp EESTTE--EEEEEETTT
T ss_pred EEcCCC--cEEEEEcCC
Confidence 555555 566677654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.086 Score=55.55 Aligned_cols=176 Identities=6% Similarity=-0.028 Sum_probs=106.1
Q ss_pred EEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCC
Q 004866 149 TLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDF 227 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg 227 (726)
.|+.+++++++...+.. ......++|.+++..||++.. ...+|+++++.+.....++......+ .++++.+.+
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~----~~~~I~r~~~~g~~~~~~~~~~~~~p--~glavd~~~ 170 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV----TLDRILRANLNGSNVEEVVSTGLESP--GGLAVDWVH 170 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEET----TTTEEEEEETTSCCEEEEECSSCSCC--CCEEEETTT
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeC----CCCcEEEEecCCCCcEEEEeCCCCCc--cEEEEEeCC
Confidence 38889998876554332 345678999998899999843 23489999987654333332221122 246778888
Q ss_pred cEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCC
Q 004866 228 HFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSR 305 (726)
Q Consensus 228 ~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (726)
..|++.... ...|+++++++. ..+.+.... . .....+++.++.||+.-... ..+|++++.+ . .
T Consensus 171 g~lY~~d~~--~~~I~~~~~dg~--~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-------~~~I~r~~~d-G---~ 235 (386)
T 3v65_B 171 DKLYWTDSG--TSRIEVANLDGA--HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-------TPRIEASSMD-G---S 235 (386)
T ss_dssp TEEEEEETT--TTEEEECBTTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEECSS-------SCEEEEEETT-S---C
T ss_pred CeEEEEcCC--CCeEEEEeCCCC--ceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-------CCEEEEEeCC-C---C
Confidence 888887653 347888888763 233333222 1 22335667788888764322 2568999887 2 2
Q ss_pred CceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 306 TWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 306 ~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
..+.++ ...-....++.+. ++.||+.-. +...|.+++++.
T Consensus 236 ~~~~~~-~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG 277 (386)
T 3v65_B 236 GRRIIA-DTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDG 277 (386)
T ss_dssp SCEEEE-CSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTS
T ss_pred CcEEEE-ECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCC
Confidence 223333 2222334566664 678887754 345788888763
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.37 Score=49.79 Aligned_cols=109 Identities=10% Similarity=0.091 Sum_probs=69.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.+..++|||||++||.+.+ +| +.++|+++++............+.|+++++.++.+...+ ..|.++|+.+
T Consensus 21 ~V~~v~fs~dg~~la~g~~-~~-----~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~ 90 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTL-KS-----FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK----EVVHIWDDVK 90 (355)
T ss_dssp CCCEEEECTTSSEEEEECS-SE-----EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST----TEEEEEETTT
T ss_pred ceEEEEECCCCCEEEEEcC-CE-----EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc----cEEEEEECCC
Confidence 4667789999999987642 22 678998887654332223466789999999887764322 3788889877
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
++. ...+.... ....+.+++++ +++.. ...++++|+.+.
T Consensus 91 ~~~-~~~~~~~~--~v~~v~~~~~~--~~~~~----~~~i~i~d~~~~ 129 (355)
T 3vu4_A 91 KQD-VSRIKVDA--PVKDLFLSREF--IVVSY----GDVISVFKFGNP 129 (355)
T ss_dssp TEE-EEEEECSS--CEEEEEECSSE--EEEEE----TTEEEEEESSTT
T ss_pred CcE-EEEEECCC--ceEEEEEcCCE--EEEEE----cCEEEEEECCCC
Confidence 642 11222222 23456677664 33333 246889998874
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.19 Score=51.18 Aligned_cols=175 Identities=6% Similarity=0.014 Sum_probs=102.8
Q ss_pred EEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC----CCceeEEeeecCCceEEEEEEc
Q 004866 150 LSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS----TDEDALLLEESNENVYVNIRHT 224 (726)
Q Consensus 150 l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t----~~~~~lv~~~~d~~~~~~~~~s 224 (726)
|+.+|+++++...+.. ......++|.+++..||++.. ....|+++++.+ .....++-.....+ .++++.
T Consensus 12 I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~----~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p--~glavd 85 (316)
T 1ijq_A 12 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDIQAP--DGLAVD 85 (316)
T ss_dssp EEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET----TTTEEEEEEC--------CEEEECSSCSCC--CEEEEE
T ss_pred EEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC----CCCcEEEEECCCCCCCcccEEEEeCCCCCc--CEEEEe
Confidence 8999999887554322 335578999999999999853 235899999875 22222221111122 256777
Q ss_pred CCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCC
Q 004866 225 KDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASF 302 (726)
Q Consensus 225 ~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~ 302 (726)
+.++.|++.... ...|.++++++ ...+.+.... . .....+++.++.+|+..... +.+|++++.+
T Consensus 86 ~~~~~ly~~d~~--~~~I~~~~~~g--~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-------~~~I~~~~~d--- 151 (316)
T 1ijq_A 86 WIHSNIYWTDSV--LGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLN--- 151 (316)
T ss_dssp TTTTEEEEEETT--TTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETT---
T ss_pred ecCCeEEEEECC--CCEEEEEeCCC--CceEEEEECCCCCcceEEeCCCCCEEEEEccCC-------CCeEEEEcCC---
Confidence 778888877543 35788899876 3334443321 1 22335667788888754321 2468888876
Q ss_pred CCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 303 PSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 303 ~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+....++....-....++.+. ++.||+.-. +..+|.+++++.
T Consensus 152 --G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg 195 (316)
T 1ijq_A 152 --GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNG 195 (316)
T ss_dssp --SCCEEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTS
T ss_pred --CCCeEEEEECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCC
Confidence 222333322222345566665 577877654 345788888763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.4 Score=48.37 Aligned_cols=199 Identities=15% Similarity=0.148 Sum_probs=101.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
..+++|+|||+ +|.++..+. .|+.+|.+++.............+++++||+ ||++.... ...+|++++..++
T Consensus 34 pegia~~~~g~--lyv~d~~~~---~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~~~--~~~~v~~~d~~~g 105 (306)
T 2p4o_A 34 LENLASAPDGT--IFVTNHEVG---EIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNA--DSIPVVSLVKSDG 105 (306)
T ss_dssp EEEEEECTTSC--EEEEETTTT---EEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEECT--TSCEEEEEECTTS
T ss_pred cceEEECCCCC--EEEEeCCCC---eEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEeccC--CcceEEEEcCCCC
Confidence 34578999998 455565443 4899998875332222233556789999998 66654321 1236888887665
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc------CCc--eEEeeeecCCEE
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC------EGL--AHCIVEHHEGFL 275 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~------~~~--~~~~~~~~g~~l 275 (726)
... .+.......+.-++...+++ .+++... ....||.+|..++.......... ... ....++++++.|
T Consensus 106 ~~~-~~~~~~~~~~~~g~~~~~~~-~~~v~d~--~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~l 181 (306)
T 2p4o_A 106 TVE-TLLTLPDAIFLNGITPLSDT-QYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 181 (306)
T ss_dssp CEE-EEEECTTCSCEEEEEESSSS-EEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred eEE-EEEeCCCccccCcccccCCC-cEEEEEC--CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEE
Confidence 422 22222333444445545544 4444432 23479999986521111111110 011 111237788888
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
|+.... +.+|++++++........+.+... ....++.+.. +.|++.... ..+|.+++.+
T Consensus 182 yv~d~~--------~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~--~~~V~~~~~~ 241 (306)
T 2p4o_A 182 YVSNTE--------KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHI--YNSVVRIAPD 241 (306)
T ss_dssp EEEETT--------TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBT--TCCEEEECTT
T ss_pred EEEeCC--------CCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCC--CCeEEEECCC
Confidence 775432 245888887511111122222111 1223444543 355554433 3457777753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.089 Score=62.19 Aligned_cols=111 Identities=8% Similarity=0.080 Sum_probs=75.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..++|||||++||... .+| .|+||+..+++...... ...+..++|+| |+.|+-.. . ...|.++++.
T Consensus 19 ~V~~lafspdg~~lAsgs-~Dg----~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s-~----D~~v~lWd~~ 87 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIAT-VTG----EVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN-A----KDTVYVLSLY 87 (902)
T ss_dssp CEEEEEEETTTTEEEEEE-TTS----EEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE-T----TCEEEEEETT
T ss_pred CcEEEEECCCCCEEEEEe-CCC----EEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE-C----cCeEEEEECC
Confidence 466788999999999875 344 59999998876544322 34577899999 88554443 2 2378888998
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+++. ...+... .....+.++||+++|+..+.++ .|.++|+.++
T Consensus 88 ~~~~-~~~~~~~--~~V~~v~~sp~g~~l~sgs~dg---~V~lwd~~~~ 130 (902)
T 2oaj_A 88 SQKV-LTTVFVP--GKITSIDTDASLDWMLIGLQNG---SMIVYDIDRD 130 (902)
T ss_dssp TCSE-EEEEECS--SCEEEEECCTTCSEEEEEETTS---CEEEEETTTT
T ss_pred CCcE-EEEEcCC--CCEEEEEECCCCCEEEEEcCCC---cEEEEECCCC
Confidence 7652 1122211 2234688999999998776543 5788898763
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.37 Score=49.14 Aligned_cols=193 Identities=13% Similarity=0.093 Sum_probs=98.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee--ccc----cccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC--SKP----QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~--~~~----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
.+..+.|||| +||-. ..+| .|+++|+.++... ... ....+..++|+||++.|+-...| ..|.
T Consensus 16 ~v~~~~~s~~--~las~-~~D~----~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----~~v~ 83 (330)
T 2hes_X 16 KIWSFDFSQG--ILATG-STDR----KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----STVS 83 (330)
T ss_dssp CEEEEEEETT--EEEEE-ESSS----CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred ceeeeccCCC--EEEEE-cCCC----EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----CcEE
Confidence 3556678988 55554 3444 4899999886422 111 12346789999999977765433 2466
Q ss_pred EEEcCCCC------ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeE---EeeccCCce-EE
Q 004866 197 CSIIGSTD------EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLT---LIWECEGLA-HC 266 (726)
Q Consensus 197 ~~~l~t~~------~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~---~l~~~~~~~-~~ 266 (726)
++++.... .....+.... .....+.|+|||++|+..+.++ .|.++|+.......+ .+......+ ..
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~g~~las~s~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHE-NEVKGVAWSNDGYYLATCSRDK---SVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp EEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS---CEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred EEEcccCcCccccceeEEEEcCCC-CcEEEEEECCCCCEEEEEeCCC---EEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 66664321 1111222211 2234688999999987655433 477778743222222 222222322 23
Q ss_pred eeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEee-cCCCceEEEEeeeC---CEEEEEEEeCCeeEEE
Q 004866 267 IVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFI-DDQGLVVEDVDFCK---THMALILREGRTYRLC 342 (726)
Q Consensus 267 ~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~~~~l~~~~~~~---~~lv~~~~~~g~~~l~ 342 (726)
.++|++..|+..+. ++ ..+|+.... ..++.+.. ......+..+.+.. ..++++...++.-+++
T Consensus 160 ~~~p~~~~l~s~s~-D~------~i~iW~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 160 IWHPSEALLASSSY-DD------TVRIWKDYD------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp EECSSSSEEEEEET-TS------CEEEEEEET------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEcC-CC------eEEEEECCC------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 45677776554433 22 255554432 12222111 11223344444443 3456667777766665
Q ss_pred EE
Q 004866 343 SV 344 (726)
Q Consensus 343 ~~ 344 (726)
-+
T Consensus 227 ~~ 228 (330)
T 2hes_X 227 KY 228 (330)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.19 Score=49.13 Aligned_cols=189 Identities=8% Similarity=0.011 Sum_probs=102.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
.++.++ || .| |.+. +....+.|.++|++||+.+.... ......-.-+++++.||... ++...++.+|..+.
T Consensus 46 qGL~~~-~~-~L-yest-G~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~lt----w~~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYR-NG-YF-YEST-GLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLT----WKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEE-TT-EE-EEEE-EETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----SSSSEEEEEETTTC
T ss_pred ceEEEE-CC-EE-EEEC-CCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEE----eeCCEEEEEECccC
Confidence 455677 65 44 4432 12236789999999999776433 22333333556788887763 45568999999887
Q ss_pred C-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE--E--eeeecCCEEEEE
Q 004866 204 D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH--C--IVEHHEGFLYLF 278 (726)
Q Consensus 204 ~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~--~--~~~~~g~~l~~~ 278 (726)
+ ...+-+. ... ..+++||+.|+++. .++.|+.+|.++.. ....+.-..++.. . .+...++.+|..
T Consensus 118 ~~~~ti~~~--~eG----~glt~dg~~L~~Sd---Gs~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNELe~~~G~lyan 187 (262)
T 3nol_A 118 RQVRSFNYD--GEG----WGLTHNDQYLIMSD---GTPVLRFLDPESLT-PVRTITVTAHGEELPELNELEWVDGEIFAN 187 (262)
T ss_dssp CEEEEEECS--SCC----CCEEECSSCEEECC---SSSEEEEECTTTCS-EEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cEEEEEECC--CCc----eEEecCCCEEEEEC---CCCeEEEEcCCCCe-EEEEEEeccCCccccccceeEEECCEEEEE
Confidence 6 3333322 222 24467999887653 25789999998742 2222222111111 0 122224567754
Q ss_pred ecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec-----------CCCceEEEEeeeC--CEEEEEEEeCCeeEEEEEe
Q 004866 279 TDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID-----------DQGLVVEDVDFCK--THMALILREGRTYRLCSVS 345 (726)
Q Consensus 279 t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-----------~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~ 345 (726)
.... -.|+++|.. + ++....+.- .....+.+++... ++|+++.. --+.++.+.
T Consensus 188 ~w~~--------~~I~vIDp~-t---G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK--~Wp~~~ev~ 253 (262)
T 3nol_A 188 VWQT--------NKIVRIDPE-T---GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK--LWPKVFEIT 253 (262)
T ss_dssp ETTS--------SEEEEECTT-T---CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET--TCSEEEEEE
T ss_pred EccC--------CeEEEEECC-C---CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC--CCCceEEEE
Confidence 4332 248888775 2 222111111 1123567777663 66666643 245555544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.91 E-value=0.22 Score=50.07 Aligned_cols=240 Identities=8% Similarity=-0.024 Sum_probs=118.5
Q ss_pred eeceeeCCCCCEEEEE----E-eCCCCcEEEEEEEECCCCceecccc------ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 124 EELSEVSPDHKFLAYT----M-YDKDNDYFTLSVRNLNSGALCSKPQ------AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~----~-~~~g~e~~~l~v~dl~tg~~~~~~~------~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
..++.|+|||+.++.+ . +..+ ..|+++|+.+|+...... ......+.+++|+..|++....
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPA---GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEEC---CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred ccCceECCCCCEEEEEeccccCCCCC---CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 3467899999744330 0 1111 258999998887654322 1345678899993356665421
Q ss_pred ceEEEEEcCCCCceeEE-eeecCC---ceEEEEEEcCCCcEEEEEEcCC-------------CceEEEEEeCCCCCCCeE
Q 004866 193 YQIYCSIIGSTDEDALL-LEESNE---NVYVNIRHTKDFHFVCVHTFST-------------TSSKVFLINAADPFSGLT 255 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv-~~~~d~---~~~~~~~~s~Dg~~l~~~~~~~-------------~~~~l~~~d~~~~~~~~~ 255 (726)
..|++++.. ++.. .+ ...... ....++.+++||+. ++..... ....||.++.+. +..
T Consensus 92 ~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g---~~~ 165 (314)
T 1pjx_A 92 LGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTDG---QMI 165 (314)
T ss_dssp TEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTTS---CEE
T ss_pred CCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEEEECCCC---CEE
Confidence 268888876 4321 11 111111 11235788999974 4444322 125799998752 333
Q ss_pred EeeccCC-ceEEeee----ecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCce---EEee-cCCC-ceEEEEeee
Q 004866 256 LIWECEG-LAHCIVE----HHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWE---SVFI-DDQG-LVVEDVDFC 325 (726)
Q Consensus 256 ~l~~~~~-~~~~~~~----~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~v~~-~~~~-~~l~~~~~~ 325 (726)
.+..... .....++ ++|+.+|+..... ..|++++.+ .. +.+. .+.. +... ....++...
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~--------~~i~~~~~~-~~--g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT--------KKLWSYDIK-GP--AKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTT--------TEEEEEEEE-ET--TEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCC--------CeEEEEECC-CC--CccccceEEEECCCCCCCCCCceEEC
Confidence 3322211 1223456 6676677654322 235555543 10 1111 1111 1111 335556655
Q ss_pred C-CEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCC-ceeeeecCCCCcCCCcEEEEEEccCCCCceEEEE
Q 004866 326 K-THMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDY 403 (726)
Q Consensus 326 ~-~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~ 403 (726)
. +.+++....++ .|.+++.+++. .+ ..+.+|. ...++. ++.++..+.++-+. ...|+.+
T Consensus 235 ~~G~l~v~~~~~~--~i~~~d~~~g~-----~~-----~~~~~~~~~~~~i~----~~~dg~~l~v~~~~---~~~l~~~ 295 (314)
T 1pjx_A 235 EDNNLLVANWGSS--HIEVFGPDGGQ-----PK-----MRIRCPFEKPSNLH----FKPQTKTIFVTEHE---NNAVWKF 295 (314)
T ss_dssp TTCCEEEEEETTT--EEEEECTTCBS-----CS-----EEEECSSSCEEEEE----ECTTSSEEEEEETT---TTEEEEE
T ss_pred CCCCEEEEEcCCC--EEEEEcCCCCc-----Ee-----EEEeCCCCCceeEE----ECCCCCEEEEEeCC---CCeEEEE
Confidence 4 45665544333 67778765322 01 1233332 222232 24556545443322 2578888
Q ss_pred ECCC
Q 004866 404 DLSY 407 (726)
Q Consensus 404 d~~~ 407 (726)
++..
T Consensus 296 ~~~~ 299 (314)
T 1pjx_A 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 7754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.094 Score=54.92 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=81.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-------ccccceeEEec-CCCEEEEEEecCCCCCceE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-------AVRVSNIAWAK-DGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-------~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l 195 (726)
+....|+|++....++...++ .|.+||+.+|+.+.... ...+..+.|++ |++.|+-...| ..|
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~----~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----~~v 230 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQ----TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----TTV 230 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTS----CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----SCE
T ss_pred eEEEEEecCCCCEEEEECCCC----cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----CeE
Confidence 456678998665444444444 49999999998654321 22456678877 66655444322 368
Q ss_pred EEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC--------ceEEe
Q 004866 196 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG--------LAHCI 267 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~--------~~~~~ 267 (726)
.++|+.........+...... ...+.|+|||++|+..+.+ ..|.++|+.++. ....+..... .....
T Consensus 231 ~~wd~~~~~~~~~~~~~h~~~-v~~v~~~p~~~~l~s~s~D---~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 231 RLWDLRITSRAVRTYHGHEGD-INSVKFFPDGQRFGTGSDD---GTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVA 305 (380)
T ss_dssp EEEETTTTCCCCEEECCCSSC-CCEEEECTTSSEEEEECSS---SCEEEEETTTTE-EEEEECCCCSSSCCSSCSCSEEE
T ss_pred EEEECCCCCcceEEECCcCCC-eEEEEEecCCCeEEEEcCC---CeEEEEECCCCc-EEEEecccccccccccCceEEEE
Confidence 888886443222233322222 2357899999988755443 357888887632 1222221111 12345
Q ss_pred eeecCCEEEEEec
Q 004866 268 VEHHEGFLYLFTD 280 (726)
Q Consensus 268 ~~~~g~~l~~~t~ 280 (726)
++++|..|+..+.
T Consensus 306 ~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 306 FSISGRLLFAGYS 318 (380)
T ss_dssp ECSSSSEEEEECT
T ss_pred ECCCCCEEEEEEC
Confidence 6778887665443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.35 Score=55.75 Aligned_cols=198 Identities=8% Similarity=-0.009 Sum_probs=115.5
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCC----ceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSG----ALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg----~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.++.+++.+++|.|+ |.... .|+.+++++. ....+.. .....+++..+.++.||++.. ...+|++.
T Consensus 427 ~gl~~d~~~~~lY~s-D~~~~---~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~----~~~~I~v~ 498 (791)
T 3m0c_C 427 VALDTEVASNRIYWS-DLSQR---MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSVA 498 (791)
T ss_dssp EEEEEETTTTEEEEE-ETTTT---EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEE
T ss_pred EEEeecccCCeeEEe-eccce---eEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec----CCCeEEEE
Confidence 345678877777554 55443 4888888763 2121111 234467888888999999843 23489999
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEE
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLY 276 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~ 276 (726)
++......+++...... -.++++.|.+.+|+|+... ....|+++++++ ...+.+.... . .....+++.++.||
T Consensus 499 ~ldG~~~~~l~~~~l~~--P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG--~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSK--PRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp ETTSSSEEEEEECTTCC--EEEEEEETTTTEEEEEECS-SSCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred eCCCCeEEEEEeCCCCC--cceEEEecCCCCEEEecCC-CCCeEEEEecCC--CceEEEEeCCCCCceEEEEecCCCeEE
Confidence 98765433333222222 2467889998899887643 235799999976 3334443322 1 22345667788888
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCC-CceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQ-GLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
+. +.. +.+|.+++++ . ..-+.++.... -....++.+++++||++-.. ...|++++..++
T Consensus 574 wa-D~~-------~~~I~~~d~d-G---~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~--~~~I~~~dk~tG 633 (791)
T 3m0c_C 574 WV-DSK-------LHSISSIDVN-G---GNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--NEAIFSANRLTG 633 (791)
T ss_dssp EE-ETT-------TTEEEEEETT-S---CSCEEEEECTTTTSSEEEEEEETTEEEEEETT--TTEEEEEETTTC
T ss_pred EE-eCC-------CCcEEEEecC-C---CceEEEecCCCccCCCCEEEEeCCEEEEEECC--CCEEEEEeCCCC
Confidence 86 322 2468888886 2 22233443211 12344677888888877543 356777775443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.85 E-value=0.31 Score=51.43 Aligned_cols=176 Identities=7% Similarity=0.017 Sum_probs=104.4
Q ss_pred EEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC----CceeEEeeecCCceEEEEEE
Q 004866 149 TLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST----DEDALLLEESNENVYVNIRH 223 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~----~~~~lv~~~~d~~~~~~~~~ 223 (726)
.|+.++++++....+.. ......++|.+.+..||++... ...|++.++.+. ....++... ...-.++++
T Consensus 93 ~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~----~~~I~~~~~~g~~~~~~~~~~~~~~--~~~p~glav 166 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRD--IQAPDGLAV 166 (400)
T ss_dssp EEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT----TTEEEEEEC------CCCEEEECSS--CSCEEEEEE
T ss_pred eeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC----CCeEEEEEcccCCCCCcceEEEeCC--CCCcccEEE
Confidence 48999999876554433 3456789999998999998432 347999988652 222333212 122245677
Q ss_pred cCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCC
Q 004866 224 TKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS 301 (726)
Q Consensus 224 s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~ 301 (726)
.+.++.|++.... ...|+++++++ ...+.+.... . .....+++.++.||+.-... +.+|++++++ .
T Consensus 167 D~~~~~lY~~d~~--~~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~-------~~~I~~~~~d-G 234 (400)
T 3p5b_L 167 DWIHSNIYWTDSV--LGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLN-G 234 (400)
T ss_dssp ETTTTEEEEEETT--TTEEEEECTTT--CSEEEEEECSSCCEEEEEEETTTTEEEEEECSS-------SCCEEEEETT-S
T ss_pred EecCCceEEEECC--CCeEEEEeCCC--CceEEEEeCCCCCcceEEEecccCeEEEEeCCC-------CCEEEEEeCC-C
Confidence 7777888887653 34788999876 3333443322 2 22345667788887754322 2458888887 2
Q ss_pred CCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 302 FPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 302 ~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
..-+.++ ...-....++.+. ++.||+.-. +...|.+++++.
T Consensus 235 ---~~~~~~~-~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG 277 (400)
T 3p5b_L 235 ---VDIYSLV-TENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNG 277 (400)
T ss_dssp ---CSCEEEE-CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTS
T ss_pred ---CccEEEE-ECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCC
Confidence 1223333 2222345566665 577877743 446788888763
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.029 Score=65.01 Aligned_cols=114 Identities=9% Similarity=0.060 Sum_probs=74.3
Q ss_pred EeeceeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceecc---cc-ccccceeEEecC--CCEEEEEEecCCCCCce
Q 004866 123 YEELSEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSK---PQ-AVRVSNIAWAKD--GQALIYVVTDQNKRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~---~~-~~~~~~~~WspD--g~~l~y~~~~~~~~~~~ 194 (726)
.+..++|||+ |++|+.+. .+| .|++||+.+++.... .. ...+..+.|+|+ ++.|+....+ ..
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s-~Dg----~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~ 124 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCS-YDG----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GK 124 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEE-TTS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SE
T ss_pred ceEEEEecCCCCCCEEEEEe-CCC----eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC-----Cc
Confidence 4667789998 99888774 455 399999999863221 11 346778999999 8877766432 37
Q ss_pred EEEEEcCCCC-ceeEEeeecCCceEEEEEEcC-------------CCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 195 IYCSIIGSTD-EDALLLEESNENVYVNIRHTK-------------DFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 195 l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~-------------Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
|.++++.++. ......... ......+.|+| |++.|+..+.++ .|.++|+.++
T Consensus 125 I~vwdl~~~~~~~~~~~~~~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg---~I~iwd~~~~ 190 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSD 190 (753)
T ss_dssp EEEEECCSSSCCCCEEEECC-SSCEEEEEECCCC---------CGGGCCEEEEETTS---CEEEEEEETT
T ss_pred EEEEEeecCCCcceeEeecC-CCceEEEEecCcccccccccccCCCCCEEEEEECCC---eEEEEeccCC
Confidence 8888887763 222233222 22234678888 588877666543 4777777654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.028 Score=59.05 Aligned_cols=141 Identities=6% Similarity=-0.027 Sum_probs=82.0
Q ss_pred eeceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCC-ceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSG-ALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg-~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+..+.|+| |++.|+-.. .+| .|.+||+... +.+.... ...+..++|+|||+.|+-...| ..|.++|
T Consensus 208 v~~~~~~~~~~~~l~sgs-~D~----~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd 277 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGS-CDT----TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD-----GTCRLFD 277 (380)
T ss_dssp EEEEEECSSSCCEEEEEE-TTS----CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS-----SCEEEEE
T ss_pred eEEEEeecCCCCEEEEEE-CCC----eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC-----CeEEEEE
Confidence 44556765 788776653 445 3999999743 4332211 3457789999999987655322 3688888
Q ss_pred cCCCCceeEEeeec-C-----CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec----cCCce-EEee
Q 004866 200 IGSTDEDALLLEES-N-----ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE----CEGLA-HCIV 268 (726)
Q Consensus 200 l~t~~~~~lv~~~~-d-----~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~----~~~~~-~~~~ 268 (726)
+.++.. ..++... . ......+.|+|||++|+....+ ..|+++|+..+. ....+.. ....+ ...+
T Consensus 278 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~-~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 278 MRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN---GDCYVWDTLLAE-MVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp TTTTEE-EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---SCEEEEETTTCC-EEEEECCSCSSCCCCCCEEEE
T ss_pred CCCCcE-EEEecccccccccccCceEEEEECCCCCEEEEEECC---CCEEEEECCCCc-eEEEEecccCCCCCceEEEEE
Confidence 877642 2222211 1 1122467899999998765443 468888987632 1222211 11111 2356
Q ss_pred eecCCEEEEEe
Q 004866 269 EHHEGFLYLFT 279 (726)
Q Consensus 269 ~~~g~~l~~~t 279 (726)
+++|..|+-.+
T Consensus 353 s~dg~~l~sgs 363 (380)
T 3iz6_a 353 SSDGSALCTGS 363 (380)
T ss_dssp CSSSSEEEEEC
T ss_pred CCCCCEEEEee
Confidence 77888655443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.25 Score=57.08 Aligned_cols=175 Identities=6% Similarity=0.013 Sum_probs=103.7
Q ss_pred EEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC---ceeEEee-ecCCceEEEEEEc
Q 004866 150 LSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD---EDALLLE-ESNENVYVNIRHT 224 (726)
Q Consensus 150 l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~---~~~lv~~-~~d~~~~~~~~~s 224 (726)
|+.+++++++...+.. ......++|.+.+..||++... ..+|++.++.... ....+.. ....+ .++++.
T Consensus 406 Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~----~~~I~~~~l~g~~~~~~~~~vi~~~l~~P--~GLAvD 479 (791)
T 3m0c_C 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRDIQAP--DGLAVD 479 (791)
T ss_dssp EEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT----TTEEEEEEC--------CEEEECSSCSCC--CEEEEE
T ss_pred eeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc----ceeEEEEeccCCCCCcceeEEEecCCCCc--ceeeee
Confidence 7888888776554433 3355678999988899998532 3479998886531 1122322 11222 357778
Q ss_pred CCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-cCC-ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCC
Q 004866 225 KDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-CEG-LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASF 302 (726)
Q Consensus 225 ~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~ 302 (726)
+.++.|+|+... ...|+++++++ ...+.+.. ... .....+++.++.||+.-... +.+|.+++++ .
T Consensus 480 ~~~~~LY~tD~~--~~~I~v~~ldG--~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-------~~~I~~~~~d-G- 546 (791)
T 3m0c_C 480 WIHSNIYWTDSV--LGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLN-G- 546 (791)
T ss_dssp TTTTEEEEEETT--TTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETT-S-
T ss_pred ecCCcEEEEecC--CCeEEEEeCCC--CeEEEEEeCCCCCcceEEEecCCCCEEEecCCC-------CCeEEEEecC-C-
Confidence 888889887653 35799999986 33344433 222 22345667778888754321 2468888887 2
Q ss_pred CCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 303 PSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 303 ~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
..-+.++ ...-....++.+. ++.||++- .+...|.+++++.
T Consensus 547 --~~~~~lv-~~~l~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG 589 (791)
T 3m0c_C 547 --VDIYSLV-TENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNG 589 (791)
T ss_dssp --CCEEEEE-CSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTS
T ss_pred --CceEEEE-eCCCCCceEEEEecCCCeEEEEe--CCCCcEEEEecCC
Confidence 2223333 3222345566655 67888774 3446788888863
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.061 Score=52.91 Aligned_cols=190 Identities=11% Similarity=0.014 Sum_probs=99.0
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
...+.++|||+ | |..+..+ .|+++|.+++....... ......+++++||+ ||++... ...|++++.+
T Consensus 69 p~~i~~~~~g~-l-~v~~~~~----~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----~~~i~~~~~~ 137 (270)
T 1rwi_B 69 PQGLAVDGAGT-V-YVTDFNN----RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG----NNRVVKLAAG 137 (270)
T ss_dssp CCCEEECTTCC-E-EEEETTT----EEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGG----GTEEEEECTT
T ss_pred cceeEECCCCC-E-EEEcCCC----EEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEECC----CCEEEEEECC
Confidence 34567999998 3 4444422 48999998775443322 13456789999987 6665422 2468888765
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEe
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t 279 (726)
+.... ...........++.+++||+ |++.... ...|+++|..+. ......... . .....++++| .+|+..
T Consensus 138 ~~~~~--~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~d~~g-~l~v~~ 209 (270)
T 1rwi_B 138 SKTQT--VLPFTGLNDPDGVAVDNSGN-VYVTDTD--NNRVVKLEAESN--NQVVLPFTDITAPWGIAVDEAG-TVYVTE 209 (270)
T ss_dssp CCSCE--ECCCCSCCSCCCEEECTTCC-EEEEEGG--GTEEEEECTTTC--CEEECCCSSCCSEEEEEECTTC-CEEEEE
T ss_pred CceeE--eeccccCCCceeEEEeCCCC-EEEEECC--CCEEEEEecCCC--ceEeecccCCCCceEEEECCCC-CEEEEE
Confidence 54321 11111111123567899998 5555432 347899998763 222221111 1 1223345555 666655
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
... ..|.+++.+ . . ....+.......+.++.+.. +.|++....++ +|.++++.
T Consensus 210 ~~~--------~~v~~~~~~-~---~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~--~v~~~~~~ 263 (270)
T 1rwi_B 210 HNT--------NQVVKLLAG-S---T-TSTVLPFTGLNTPLAVAVDSDRTVYVADRGND--RVVKLTSL 263 (270)
T ss_dssp TTT--------SCEEEECTT-C---S-CCEECCCCSCSCEEEEEECTTCCEEEEEGGGT--EEEEECCC
T ss_pred CCC--------CcEEEEcCC-C---C-cceeeccCCCCCceeEEECCCCCEEEEECCCC--EEEEEcCC
Confidence 432 237777765 2 1 11122211113355666553 45666654443 55566543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.049 Score=56.02 Aligned_cols=142 Identities=10% Similarity=-0.056 Sum_probs=84.5
Q ss_pred EeeceeeCCC---CCEEEEEEeCCCCcEEEEEEEECCCCceecccc-------ccccceeEEecCC----CEEEEEEecC
Q 004866 123 YEELSEVSPD---HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-------AVRVSNIAWAKDG----QALIYVVTDQ 188 (726)
Q Consensus 123 ~~~~~~~SPD---G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-------~~~~~~~~WspDg----~~l~y~~~~~ 188 (726)
.+..++|||+ |..+.++....| .|.++|+.+++.+.... ...+..++|+||+ +.|+... .
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~- 93 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSN----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG-S- 93 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETT----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE-T-
T ss_pred ceEEEEEecccCCCCceEEEECCCC----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec-C-
Confidence 4667789985 665555544344 49999999876543211 1346789999994 4454443 2
Q ss_pred CCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee----ccCCc
Q 004866 189 NKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW----ECEGL 263 (726)
Q Consensus 189 ~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~----~~~~~ 263 (726)
...|.++++.+++. ...+.... .....+.|+| ++++|+..+.+ ..|+++|+.++ +..... .....
T Consensus 94 ---dg~i~v~d~~~~~~-~~~~~~~~-~~i~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 94 ---RGIIRIINPITMQC-IKHYVGHG-NAINELKFHPRDPNLLLSVSKD---HALRLWNIQTD--TLVAIFGGVEGHRDE 163 (366)
T ss_dssp ---TCEEEEECTTTCCE-EEEEESCC-SCEEEEEECSSCTTEEEEEETT---SCEEEEETTTT--EEEEEECSTTSCSSC
T ss_pred ---CCEEEEEEchhceE-eeeecCCC-CcEEEEEECCCCCCEEEEEeCC---CeEEEEEeecC--eEEEEecccccccCc
Confidence 23788889887642 22222222 2234688999 88888766653 35888898773 332222 12222
Q ss_pred e-EEeeeecCCEEEEEec
Q 004866 264 A-HCIVEHHEGFLYLFTD 280 (726)
Q Consensus 264 ~-~~~~~~~g~~l~~~t~ 280 (726)
+ ...+++++..|+..+.
T Consensus 164 v~~~~~~~~~~~l~~~~~ 181 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGM 181 (366)
T ss_dssp EEEEEECTTSSEEEEEET
T ss_pred eeEEEECCCCCEEEEecC
Confidence 2 2345677777665544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.024 Score=58.32 Aligned_cols=153 Identities=7% Similarity=0.025 Sum_probs=85.3
Q ss_pred CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCC-C-----CceEEEEEcCCCC
Q 004866 132 DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNK-R-----PYQIYCSIIGSTD 204 (726)
Q Consensus 132 DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~-~-----~~~l~~~~l~t~~ 204 (726)
++++| |+.+.+.+ ..|.++|+++++.+.... ......+.++|||+ +|++...... . ...|+++|..+.+
T Consensus 139 ~~~~l-yv~~~~~~--~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 139 YGKYV-YVNCWSYQ--NRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp ETTEE-EEEECTTC--CEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred ECCEE-EEEcCCCC--CEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCe
Confidence 56665 44454211 259999999997665322 23446788999997 6666432211 1 2579999988765
Q ss_pred -ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc--CCceEEeeeecCCEEEEEecC
Q 004866 205 -EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC--EGLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 205 -~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~g~~l~~~t~~ 281 (726)
...+ ..+....-.+++++||+++|++... .++.+|++++......+... .......++++++.+|+....
T Consensus 215 v~~~~--~~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 215 VEKQF--KFKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp EEEEE--ECCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred EEEEE--ecCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccc
Confidence 2222 2211112236789999999887543 69999998743111111111 111223456667777765411
Q ss_pred cccCCCCCCeEEEEeeCC
Q 004866 282 AKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~ 299 (726)
+- ..+..|..++.+
T Consensus 288 ~y----~~~~~V~v~d~~ 301 (328)
T 3dsm_A 288 DY----QQQGIVYRYSPQ 301 (328)
T ss_dssp TS----SSEEEEEEECTT
T ss_pred cc----ccCCEEEEECCC
Confidence 10 012457777654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.13 Score=50.50 Aligned_cols=191 Identities=10% Similarity=0.013 Sum_probs=96.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
...+.++|||+ |.++.+..++ .|+++|..++....... ......+++++||+ ||++.. ...|++++..
T Consensus 26 p~~i~~~~~g~-l~v~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-----~~~i~~~d~~ 95 (270)
T 1rwi_B 26 PSGVAVDSAGN-VYVTSEGMYG---RVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-----NNRVVTLAAG 95 (270)
T ss_dssp EEEEEECTTCC-EEEEECSSSC---EEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-----TTEEEEECTT
T ss_pred ccceEECCCCC-EEEEccCCCC---cEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-----CCEEEEEeCC
Confidence 34567999998 4331443332 58888887765433222 23456789999998 766642 3478888876
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCEEEEEe
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~l~~~t 279 (726)
+.... .+.........++.+++||+ |++.... ...|++++..+. ......... ......++++|. +|+..
T Consensus 96 ~~~~~--~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~-l~v~~ 167 (270)
T 1rwi_B 96 SNNQT--VLPFDGLNYPEGLAVDTQGA-VYVADRG--NNRVVKLAAGSK--TQTVLPFTGLNDPDGVAVDNSGN-VYVTD 167 (270)
T ss_dssp CSCCE--ECCCCSCSSEEEEEECTTCC-EEEEEGG--GTEEEEECTTCC--SCEECCCCSCCSCCCEEECTTCC-EEEEE
T ss_pred CceEe--eeecCCcCCCcceEECCCCC-EEEEECC--CCEEEEEECCCc--eeEeeccccCCCceeEEEeCCCC-EEEEE
Confidence 54321 12111112234678899997 5554432 346788876542 222211111 112234456665 66554
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCC-EEEEEEEeCCeeEEEEEecC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKT-HMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~lv~~~~~~g~~~l~~~~l~ 347 (726)
... ..|++++.+ . .. .............++....+ .|++....+ ..|.+++.+
T Consensus 168 ~~~--------~~i~~~~~~-~---~~-~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~--~~v~~~~~~ 221 (270)
T 1rwi_B 168 TDN--------NRVVKLEAE-S---NN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNT--NQVVKLLAG 221 (270)
T ss_dssp GGG--------TEEEEECTT-T---CC-EEECCCSSCCSEEEEEECTTCCEEEEETTT--SCEEEECTT
T ss_pred CCC--------CEEEEEecC-C---Cc-eEeecccCCCCceEEEECCCCCEEEEECCC--CcEEEEcCC
Confidence 322 347777765 2 11 11111111134556666654 666654433 356677754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.022 Score=60.26 Aligned_cols=73 Identities=8% Similarity=-0.057 Sum_probs=50.1
Q ss_pred EeeceeeCC--------CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSP--------DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SP--------DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
.+..++||| ||+.||-..+ ++ +|+|||+.++....... ...+..++|+|++..++.+...+
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~-D~----tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---- 208 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGD-DC----TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN---- 208 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEET-TS----EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT----
T ss_pred ceEEEEEccccccccCCCCCEEEEEEC-CC----eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC----
Confidence 466778988 9999887653 33 59999998876543322 34566899999987666654332
Q ss_pred ceEEEEEcCCCC
Q 004866 193 YQIYCSIIGSTD 204 (726)
Q Consensus 193 ~~l~~~~l~t~~ 204 (726)
..|.++|+.+++
T Consensus 209 ~~v~~wd~~t~~ 220 (393)
T 4gq1_A 209 GNIRIFDWTLNL 220 (393)
T ss_dssp SEEEEEETTCCC
T ss_pred CEEEEEECCCCc
Confidence 367777876654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.64 Score=52.22 Aligned_cols=196 Identities=11% Similarity=0.001 Sum_probs=121.4
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.++.|+++++.|-++ |.... .|+.++++++....+.. .....+++..+.++.||++.. ....|.+.++..
T Consensus 40 ~~l~~d~~~~~lywt-D~~~~---~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~----~~~~I~v~~~dG 111 (628)
T 4a0p_A 40 SALDFDVTDNRIYWT-DISLK---TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT----GTNRIEVSKLDG 111 (628)
T ss_dssp EEEEEETTTTEEEEE-ETTTT---EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEEETTS
T ss_pred EEEEEECCCCEEEEE-ECCCC---eEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC----CCCEEEEEecCC
Confidence 356789998887555 65443 58889998765433222 224557788778889999743 235899999876
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~ 281 (726)
.....++......+ .++++.|...+|+++... ....|+.+++++. ..+.+..... .....++++++.||+.-..
T Consensus 112 ~~~~~l~~~~l~~P--~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~--~~~~l~~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 112 QHRQVLVWKDLDSP--RALALDPAEGFMYWTEWG-GKPKIDRAAMDGS--ERTTLVPNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp TTCEEEECSSCCCE--EEEEEETTTTEEEEEECS-SSCEEEEEETTSC--SCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred CcEEEEEeCCCCCc--ccEEEccCCCeEEEeCCC-CCCEEEEEeCCCC--ceEEEECCCCCcceEEEccccCEEEEEECC
Confidence 54333332222222 467888888889887652 3568999999873 3444443221 2234567778888876432
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
+..|.+++++ .. ...++... -....++.+++++||++-..+ ..|.+++..++
T Consensus 187 --------~~~I~~~d~d-G~----~~~v~~~~-l~~P~glav~~~~ly~tD~~~--~~I~~~dk~tg 238 (628)
T 4a0p_A 187 --------TNLIESSNML-GL----NREVIADD-LPHPFGLTQYQDYIYWTDWSR--RSIERANKTSG 238 (628)
T ss_dssp --------TTEEEEEETT-SC----SCEEEEEC-CSCEEEEEEETTEEEEEETTT--TEEEEEETTTC
T ss_pred --------CCEEEEEcCC-CC----ceEEeecc-CCCceEEEEECCEEEEecCCC--CEEEEEECCCC
Confidence 2458888887 21 12344332 233557888888888775433 35677775543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.11 Score=57.00 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=69.3
Q ss_pred C-CCCCEEEEEEeC-------------CCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCC---
Q 004866 130 S-PDHKFLAYTMYD-------------KDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKR--- 191 (726)
Q Consensus 130 S-PDG~~la~~~~~-------------~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~--- 191 (726)
+ |||++|...... .......+.++|.++.+...... .+....++.+|||+++|.+..+....
T Consensus 143 ~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i 222 (595)
T 1fwx_A 143 KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTL 222 (595)
T ss_dssp CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred ecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcch
Confidence 5 889887444210 12335679999999987664333 34556789999999999987654210
Q ss_pred ------------------------------CceEEEEEcCC--CCc-eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC
Q 004866 192 ------------------------------PYQIYCSIIGS--TDE-DALLLEESNENVYVNIRHTKDFHFVCVHTFSTT 238 (726)
Q Consensus 192 ------------------------------~~~l~~~~l~t--~~~-~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~ 238 (726)
...|-.+|..+ +.. ...+ .....+. ++.+|||||+++++.. .
T Consensus 223 ~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~I-pvg~~Ph--Gv~~sPDGk~v~V~~~--~ 297 (595)
T 1fwx_A 223 PEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYI-PIANNPH--GCNMAPDKKHLCVAGK--L 297 (595)
T ss_dssp HHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEE-EEESSCC--CEEECTTSSEEEEECT--T
T ss_pred hhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEE-ecCCCce--EEEEcCCCCEEEEeCC--C
Confidence 01244555554 211 1111 1122222 4678999999986543 4
Q ss_pred ceEEEEEeCCC
Q 004866 239 SSKVFLINAAD 249 (726)
Q Consensus 239 ~~~l~~~d~~~ 249 (726)
.+.+.++|+++
T Consensus 298 s~~VsVid~~~ 308 (595)
T 1fwx_A 298 SPTVTVLDVTR 308 (595)
T ss_dssp SSBEEEEEGGG
T ss_pred CCeEEEEECcc
Confidence 46788888874
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.39 Score=48.97 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=87.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcE---------------------EEEEEEECCCCceecccc---ccccceeEEecCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDY---------------------FTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDG 178 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~---------------------~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg 178 (726)
.+.+++++|||+.++. +..+... ..|+++|.++|+.+.... ......++++|||
T Consensus 25 ~v~~va~d~~G~l~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIF--HRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CEEEEEECTTCCEEEE--ECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CceEEEECCCCCEEEE--eCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4667889999986543 3333100 159999999998764322 1244678999999
Q ss_pred CEEEEEEecCCCCCceEEEEEcCCCCceeEEeee--------cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 179 QALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEE--------SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 179 ~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~--------~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+ ||++.. ....|++++..........+.. ..-..-.+++++|++..|++... .....|++++..+
T Consensus 103 ~-l~v~d~----~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-~~~~~I~~~~~~g- 175 (329)
T 3fvz_A 103 N-YWVTDV----ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-YCNSRIVQFSPSG- 175 (329)
T ss_dssp C-EEEEET----TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-SSCCEEEEECTTS-
T ss_pred C-EEEEEC----CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-CCCCeEEEEcCCC-
Confidence 8 776642 2347888887543212222221 01112346889994444555442 1245788888543
Q ss_pred CCCeEEeeccCC-----------ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 251 FSGLTLIWECEG-----------LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 251 ~~~~~~l~~~~~-----------~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.....+..... .....++++++.+|+..... .+|..++.+
T Consensus 176 -~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~--------~~I~~~~~~ 226 (329)
T 3fvz_A 176 -KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN--------GRIQCFKTD 226 (329)
T ss_dssp -CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT--------TEEEEEETT
T ss_pred -CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC--------CEEEEEECC
Confidence 22222221111 12234566767777654322 346667654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.082 Score=54.18 Aligned_cols=151 Identities=12% Similarity=0.019 Sum_probs=75.1
Q ss_pred EeeceeeCCCCCEEE-------------EEEeCC-------CCcEEEEEEEECCCCceeccccc-----cccceeEEecC
Q 004866 123 YEELSEVSPDHKFLA-------------YTMYDK-------DNDYFTLSVRNLNSGALCSKPQA-----VRVSNIAWAKD 177 (726)
Q Consensus 123 ~~~~~~~SPDG~~la-------------~~~~~~-------g~e~~~l~v~dl~tg~~~~~~~~-----~~~~~~~WspD 177 (726)
.+..+.+||||+.++ |+.-.+ |+...+|.|||+++|+.+..... ......+|+||
T Consensus 158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 344567888887744 332001 22234799999999986654221 12334589999
Q ss_pred CCEEEEEEecC-------CCCCceEEEEEcCCCC-ceeEEeeecCCc--eEEEEEEcCCCcEEEEEEcCCCceEEEEEeC
Q 004866 178 GQALIYVVTDQ-------NKRPYQIYCSIIGSTD-EDALLLEESNEN--VYVNIRHTKDFHFVCVHTFSTTSSKVFLINA 247 (726)
Q Consensus 178 g~~l~y~~~~~-------~~~~~~l~~~~l~t~~-~~~lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 247 (726)
|+.++....+. ......|.+++..++. ..++.+..++.. .++...+ ++..++-.+.+ ..|.++|+
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~D---gTIkIWDl 312 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTS---GTIAIWDL 312 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETT---SCEEEEET
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCC---CcEEEEEC
Confidence 98776543211 1223456666776654 111111111111 1222222 24444432222 35888899
Q ss_pred CCCCCCeEEeeccCCc-eE-EeeeecCCEEEEEe
Q 004866 248 ADPFSGLTLIWECEGL-AH-CIVEHHEGFLYLFT 279 (726)
Q Consensus 248 ~~~~~~~~~l~~~~~~-~~-~~~~~~g~~l~~~t 279 (726)
.++. ....+....+. .. ..++|||+.|+--+
T Consensus 313 ~tGk-~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 313 LLGQ-CTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp TTCS-EEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred CCCc-EEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 8842 23334333332 22 45788888766444
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.34 Score=48.55 Aligned_cols=241 Identities=8% Similarity=0.039 Sum_probs=119.5
Q ss_pred EEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEE-ecCCCCCceEEEEEcCCCC---ceeEEeeecCCceEEEE
Q 004866 148 FTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVV-TDQNKRPYQIYCSIIGSTD---EDALLLEESNENVYVNI 221 (726)
Q Consensus 148 ~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~-~~~~~~~~~l~~~~l~t~~---~~~lv~~~~d~~~~~~~ 221 (726)
.+++++|+.+++...+.. ..........-++ .||+.- .+.......++++++.+.. -.. +...+..+.....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETT-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECC-EEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccceeE
Confidence 358899999887665432 1222222333455 455432 2222233579999987764 222 2222222222222
Q ss_pred EEcCCCcEEEEEEcCC--CceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEEecCcccCCCCCCeEEEEeeC
Q 004866 222 RHTKDFHFVCVHTFST--TSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPV 298 (726)
Q Consensus 222 ~~s~Dg~~l~~~~~~~--~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~ 298 (726)
. .-+++.+++.-... ..++++.+|+.+ .+++.+.+...... ......++.+|+..-..+.. ....++.+|.
T Consensus 109 ~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~d~ 182 (301)
T 2vpj_A 109 T-TLGDMIYVSGGFDGSRRHTSMERYDPNI--DQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN---ILNSVEKYDP 182 (301)
T ss_dssp E-EETTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSC---BCCCEEEEET
T ss_pred E-EECCEEEEEcccCCCcccceEEEEcCCC--CeEEECCCCCCCcccceEEEECCEEEEECCCCCCc---ccceEEEEeC
Confidence 2 22555433322222 236899999987 55666543322111 11112366788775432211 1245777877
Q ss_pred CCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCC---eeEEEEEecCCCCCCcceeecccccccccCCCceeeee
Q 004866 299 DASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGR---TYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIV 375 (726)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g---~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 375 (726)
. ...|+.+-+......-......++.|++..-.++ ...++++|+.+.. +... ..++.|....++.
T Consensus 183 ~----~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~------W~~~--~~~p~~r~~~~~~ 250 (301)
T 2vpj_A 183 H----TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS------WTTV--TSMTTPRCYVGAT 250 (301)
T ss_dssp T----TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE------EEEE--CCCSSCCBSCEEE
T ss_pred C----CCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc------EEEC--CCCCCcccceeEE
Confidence 6 4689876322111212234445788888764433 3468889876532 2211 1223332211111
Q ss_pred cCCCCcCCCcEEEEEEccCC---CCceEEEEECCCCeEEEEEe
Q 004866 376 PGPNYDYYSSTMRFAISSPV---MPDAVVDYDLSYGKWNIIQQ 415 (726)
Q Consensus 376 ~~~~~~~~~~~~~~~~ss~~---~P~~~~~~d~~~~~~~~~~~ 415 (726)
..+ +.+ +.+.+.. .-..++.||+++++++.+..
T Consensus 251 -----~~~-~~i-~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 251 -----VLR-GRL-YAIAGYDGNSLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp -----EET-TEE-EEECCBCSSSBEEEEEEEETTTTEEEEEEE
T ss_pred -----EEC-CEE-EEEcCcCCCcccccEEEEcCCCCeEEEcCC
Confidence 122 333 3333322 22588999999999987754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.15 Score=51.85 Aligned_cols=156 Identities=14% Similarity=-0.003 Sum_probs=87.4
Q ss_pred eceeeCC-CCCEEEEEEeCCC--------------CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecC
Q 004866 125 ELSEVSP-DHKFLAYTMYDKD--------------NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQ 188 (726)
Q Consensus 125 ~~~~~SP-DG~~la~~~~~~g--------------~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~ 188 (726)
..+.+.| ||+ | |..+... .....|+.+|.++++...... ......++|+|||+.||++...
T Consensus 129 ~~i~~d~~~G~-l-~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~- 205 (322)
T 2fp8_A 129 YAVTVDQRTGI-V-YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL- 205 (322)
T ss_dssp EEEEECTTTCC-E-EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG-
T ss_pred ceEEEecCCCE-E-EEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC-
Confidence 4567899 886 3 4444331 112468999998886543321 2234568999999999887432
Q ss_pred CCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcC--------CCceEEEEEeCCCCCCCeEEeec
Q 004866 189 NKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFS--------TTSSKVFLINAADPFSGLTLIWE 259 (726)
Q Consensus 189 ~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~--------~~~~~l~~~d~~~~~~~~~~l~~ 259 (726)
...|+++++.+.. ....++..... -.++.+.++|+ |++.... .....|+.+|.++ .....+..
T Consensus 206 ---~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G--~~~~~~~~ 277 (322)
T 2fp8_A 206 ---SHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG--NILEVIPL 277 (322)
T ss_dssp ---GTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS--CEEEEEEC
T ss_pred ---CCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC--CEEEEEEC
Confidence 3589999987543 12222222212 34578899997 5555443 2245788888753 22333332
Q ss_pred cCCc---eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 260 CEGL---AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 260 ~~~~---~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.... ....+...++.||+.+... ..|.+++++
T Consensus 278 ~~g~~~~~~~~~~~~~g~L~v~~~~~--------~~i~~~~~~ 312 (322)
T 2fp8_A 278 PPPFAGEHFEQIQEHDGLLYIGTLFH--------GSVGILVYD 312 (322)
T ss_dssp CTTTTTSCCCEEEEETTEEEEECSSC--------SEEEEEEC-
T ss_pred CCCCccccceEEEEeCCEEEEeecCC--------CceEEEecc
Confidence 2211 1111223467788765432 347777765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.15 Score=54.28 Aligned_cols=113 Identities=9% Similarity=0.037 Sum_probs=70.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECC---CCceeccccc--------------ccccee--EEecCCCEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN---SGALCSKPQA--------------VRVSNI--AWAKDGQALIY 183 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~---tg~~~~~~~~--------------~~~~~~--~WspDg~~l~y 183 (726)
.+..++|+||+++|+... .+| .|.+||++ +|+....... .....+ .|++|++.|+.
T Consensus 113 ~v~~~~~~~~~~~l~s~s-~dg----~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSS-KDG----QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEe-CCC----EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 466789999999998764 444 48899984 5543322110 111222 26778877766
Q ss_pred EEecCCCCCceEEEEEcCCCCceeEEeeec-CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 184 VVTDQNKRPYQIYCSIIGSTDEDALLLEES-NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 184 ~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~-d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
...+ ..|+++++.+++. ...+... .......+.++||+++|+..+.+ ..|.++|+.+
T Consensus 188 ~~~d-----~~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~ 245 (437)
T 3gre_A 188 LTNL-----SRVIIFDIRTLER-LQIIENSPRHGAVSSICIDEECCVLILGTTR---GIIDIWDIRF 245 (437)
T ss_dssp EETT-----SEEEEEETTTCCE-EEEEECCGGGCCEEEEEECTTSCEEEEEETT---SCEEEEETTT
T ss_pred EeCC-----CeEEEEeCCCCee-eEEEccCCCCCceEEEEECCCCCEEEEEcCC---CeEEEEEcCC
Confidence 5432 3789999987652 2222221 12234568899999998876654 3588889876
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.38 Score=50.96 Aligned_cols=112 Identities=13% Similarity=-0.001 Sum_probs=70.2
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-c----c-cccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-K----P-QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~----~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
+.|+|||+.|.++ +..+.. .|++++..++.... . . .......++++|++..||++ +. ..+|++++.
T Consensus 176 ia~~~~g~~l~~~-d~~~~~--~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~--d~---~~~I~~~d~ 247 (409)
T 3hrp_A 176 PAVTKDKQRVYSI-GWEGTH--TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFV--DS---NKNFGRFNV 247 (409)
T ss_dssp CEECTTSSEEEEE-BSSTTC--EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEE--CT---TCEEEEEET
T ss_pred eeEecCCCcEEEE-ecCCCc--eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEE--EC---CCcEEEEEC
Confidence 6899999977554 554432 58999988775422 1 1 12345678999977778884 22 348999998
Q ss_pred CCCCceeEEe---eecCCceE-E-EEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLL---EESNENVY-V-NIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~---~~~d~~~~-~-~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.++.. .++- ........ . ++.++|++..|++.... ...|++++.++
T Consensus 248 ~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~--~~~I~~~~~~g 298 (409)
T 3hrp_A 248 KTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN--LSSVYKITPDG 298 (409)
T ss_dssp TTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT--TTEEEEECTTC
T ss_pred CCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCC--CCEEEEEecCC
Confidence 76642 2220 11111111 1 67899988888876543 35788888765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.052 Score=55.25 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=68.1
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc-c---ccccceeEEecC--CCEEEEEEecCCCCCceEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-Q---AVRVSNIAWAKD--GQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-~---~~~~~~~~WspD--g~~l~y~~~~~~~~~~~l~ 196 (726)
.+..++|||||++||-.. .++ .|.|+|+.+++...+. . ...+..++|+|+ ++.|+-...| ..|.
T Consensus 15 ~V~~v~~s~~g~~lasgs-~D~----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~v~ 84 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCS-SDR----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RKVI 84 (316)
T ss_dssp CEEEEEECGGGCEEEEEE-TTT----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SCEE
T ss_pred eEEEeeEcCCCCEEEEEe-CCC----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CEEE
Confidence 466778999999998764 344 5999999887532211 1 345678899864 7766554333 3577
Q ss_pred EEEcCCCC-ceeEEeeecCCceEEEEEEcCC--CcEEEEEEcCCCceEEEEEeCCC
Q 004866 197 CSIIGSTD-EDALLLEESNENVYVNIRHTKD--FHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 197 ~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
++++.++. .....+..... ....+.|+|| |++|+..+.+ ..|.++|+.+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~g~~lasgs~D---~~i~lwd~~~ 136 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDS-SVNSVCWAPHDYGLILACGSSD---GAISLLTYTG 136 (316)
T ss_dssp EECCSSSCCCEEEEECCCSS-CCCEEEECCTTTCSCEEEECSS---SCEEEEEECS
T ss_pred EEECCCCcceEEEEccCCCC-ceEEEEECCCCCCcEEEEEcCC---CCEEEEecCC
Confidence 77887654 22223322222 2235789998 6666544332 2356666654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.44 Score=48.00 Aligned_cols=104 Identities=8% Similarity=-0.029 Sum_probs=64.9
Q ss_pred EeeceeeCC--CCCEEEEEEeCCCCcEEEEEEEECCCCce---------ecc-cc-ccccceeEEecC--CCEEEEEEec
Q 004866 123 YEELSEVSP--DHKFLAYTMYDKDNDYFTLSVRNLNSGAL---------CSK-PQ-AVRVSNIAWAKD--GQALIYVVTD 187 (726)
Q Consensus 123 ~~~~~~~SP--DG~~la~~~~~~g~e~~~l~v~dl~tg~~---------~~~-~~-~~~~~~~~WspD--g~~l~y~~~~ 187 (726)
.+..++|+| ||++|+... .+| .|.+||+.+++. ... .. ...+..+.|+|+ ++.|+....+
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~-~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASAS-YDK----TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEE-TTS----CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEEEEEcCCCCCCEEEEEc-CCC----eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 466788999 799988764 445 399999998742 111 11 345678999999 8877766432
Q ss_pred CCCCCceEEEEEcCCCC-ceeEEeee----------cCCceEEEEEEcCC---CcEEEEEEcC
Q 004866 188 QNKRPYQIYCSIIGSTD-EDALLLEE----------SNENVYVNIRHTKD---FHFVCVHTFS 236 (726)
Q Consensus 188 ~~~~~~~l~~~~l~t~~-~~~lv~~~----------~d~~~~~~~~~s~D---g~~l~~~~~~ 236 (726)
..|+++++.++. ...+.... ........+.|+|+ ++.|+.....
T Consensus 134 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 191 (351)
T 3f3f_A 134 -----GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE 191 (351)
T ss_dssp -----CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT
T ss_pred -----CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC
Confidence 368888887664 11111100 01111235788997 8877766553
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.12 Score=55.19 Aligned_cols=156 Identities=14% Similarity=0.204 Sum_probs=89.6
Q ss_pred eceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
..++++| ++..| |..+.. ..|+++|++++....+.. ......++|++||+.||++..........++..+...
T Consensus 140 ~~lavdp~~~g~L-yv~d~~----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 140 VWLSFDPKNHNHL-YLVGEQ----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CEEEEETTEEEEE-EEEEBT----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CEEEECCCCCCeE-EEEeCC----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 4567898 46654 666654 469999999887554432 2345678999999989887543222223455555433
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC---CceEEeeeecCCEEEEEe
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE---GLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~---~~~~~~~~~~g~~l~~~t 279 (726)
.-...........+ .++.++|++.+|++.... ...|++++.+++ ....+.... ......++++|+.||+..
T Consensus 215 ~~~~~~~l~~~~~p--~giavdp~~g~lyv~d~~--~~~V~~~~~~~~--~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELTKGQNC--NGAETHPINGELYFNSWN--AGQVFRYDFTTQ--ETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEEECSSC--CCEEECTTTCCEEEEETT--TTEEEEEETTTT--EEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeeccCCCc--eEEEEeCCCCEEEEEECC--CCEEEEEECCCC--cEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 22211122222222 246789966667776543 357999998763 332222211 123345678888787764
Q ss_pred cCcccCCCCCCeEEEEeeCC
Q 004866 280 DAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~ 299 (726)
.. +.+|++++.+
T Consensus 289 ~~--------~~~I~~~~~d 300 (430)
T 3tc9_A 289 VN--------QHYILRSDYD 300 (430)
T ss_dssp TT--------TTEEEEEEEE
T ss_pred CC--------CCEEEEEeCC
Confidence 32 2457776654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.99 Score=44.73 Aligned_cols=224 Identities=9% Similarity=-0.034 Sum_probs=109.1
Q ss_pred EEEEEECCCCceeccccc---cccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcC
Q 004866 149 TLSVRNLNSGALCSKPQA---VRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTK 225 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~~---~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~ 225 (726)
.|+++|.++|+.+-.... .....+.++|||+.|+ + . ...|+.++. +++ ..--+.........++.+++
T Consensus 16 ~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s-~-----~~~V~~~d~-~G~-~~W~~~~~~~~~~~~~~~~~ 86 (276)
T 3no2_A 16 KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S-Y-----SKGAKMITR-DGR-ELWNIAAPAGCEMQTARILP 86 (276)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E-C-----BSEEEEECT-TSC-EEEEEECCTTCEEEEEEECT
T ss_pred EEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e-C-----CCCEEEECC-CCC-EEEEEcCCCCccccccEECC
Confidence 588999999987643322 2456788999998555 3 2 235777777 443 11122222112233567899
Q ss_pred CCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC--c-----eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeC
Q 004866 226 DFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG--L-----AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPV 298 (726)
Q Consensus 226 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~--~-----~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~ 298 (726)
||+.|+..... ...++.+|.++ ..+..+..... . ....+.++|+.++..+. +.+|+.++.
T Consensus 87 dG~~lv~~~~~--~~~v~~vd~~G--k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~ 153 (276)
T 3no2_A 87 DGNALVAWCGH--PSTILEVNMKG--EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAP 153 (276)
T ss_dssp TSCEEEEEEST--TEEEEEECTTS--CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECT
T ss_pred CCCEEEEecCC--CCEEEEEeCCC--CEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECC
Confidence 99998765541 34677777643 22222211111 0 01123456665543221 235777775
Q ss_pred CCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecCC
Q 004866 299 DASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGP 378 (726)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 378 (726)
+ ++..|+.-. +.... ......++.+++....++ +|..+|..+++ .-|.+.........+.. ..++
T Consensus 154 ~---G~~~w~~~~-~~~~~--~~~~~~~g~~~v~~~~~~--~v~~~d~~tG~--~~w~~~~~~~~~~~l~~-~~~~---- 218 (276)
T 3no2_A 154 N---GQLLNSVKL-SGTPF--SSAFLDNGDCLVACGDAH--CFVQLNLESNR--IVRRVNANDIEGVQLFF-VAQL---- 218 (276)
T ss_dssp T---SCEEEEEEC-SSCCC--EEEECTTSCEEEECBTTS--EEEEECTTTCC--EEEEEEGGGSBSCCCSE-EEEE----
T ss_pred C---CCEEEEEEC-CCCcc--ceeEcCCCCEEEEeCCCC--eEEEEeCcCCc--EEEEecCCCCCCccccc-cccc----
Confidence 4 334454221 11111 112223455555544433 58888876543 22333211000001111 1111
Q ss_pred CCcCCCcEEEEEEccCC------CCceEEEEECCCCeE
Q 004866 379 NYDYYSSTMRFAISSPV------MPDAVVDYDLSYGKW 410 (726)
Q Consensus 379 ~~~~~~~~~~~~~ss~~------~P~~~~~~d~~~~~~ 410 (726)
....++..++..+.+-. ....++.+|. +|++
T Consensus 219 ~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~ 255 (276)
T 3no2_A 219 FPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKV 255 (276)
T ss_dssp EECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBE
T ss_pred eEcCCCCEEEEeccCccccccccCCceEEEECC-CCCE
Confidence 12345666555553432 3668999886 4554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=66.04 Aligned_cols=196 Identities=8% Similarity=-0.020 Sum_probs=108.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCC----Cceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNS----GALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~t----g~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.++.|+++++.|.|+ +..+. .|+++++++ .....+.. .....++++.+.++.||++.. ....|+++
T Consensus 409 ~gla~d~~~~~Ly~s-D~~~~---~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~----~~~~I~v~ 480 (699)
T 1n7d_A 409 VALDTEVASNRIYWS-DLSQR---MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSVA 480 (699)
T ss_dssp CCCEEETTTTEEEEC-CTTTT---SBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT----TTSCEEEE
T ss_pred EEEccccccCeEEEE-ecCCC---eEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec----cCCeEEEE
Confidence 356799988887554 55543 388899886 22222211 123456777777778888631 23478888
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEee-ccC-CceEEeeeecCCEEE
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIW-ECE-GLAHCIVEHHEGFLY 276 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~-~~~-~~~~~~~~~~g~~l~ 276 (726)
++.+.....++......+ .++++.|++.+|+++... ....|+++++++.. .+.+. ... ......++++++.||
T Consensus 481 d~dg~~~~~l~~~~~~~P--~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~--~~~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 481 DTKGVKRKTLFREQGSKP--RAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp BSSSCCEEEECCCSSCCC--CCEECCSSSSCCEECCCS-SSCCEEBCCSSSCC--CCEESCSSCSSCCCEEECTTTCCEE
T ss_pred ecCCCceEEEEeCCCCCc--ceEEEccCCCcEEEcccC-CCCeEEEEeCCCCC--eeEEEeCCCCCccEEEEeccCCEEE
Confidence 876543222221111222 246788988888876532 23578888886532 22222 111 112345677788888
Q ss_pred EEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecC-CCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 277 LFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDD-QGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 277 ~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
+.-.. +.+|.+++++ . ...+.++... .-....++.+++++||++.. +..+|.+++..
T Consensus 556 ~aD~~--------~~~I~~~d~d-G---~~~~~~~~~~~~~~~P~glavd~~~lywtd~--~~~~V~~~d~~ 613 (699)
T 1n7d_A 556 WVDSK--------LHSISSIDVN-G---GNRKTILEDEKRLAHPFSLAVFEDKVFWTDI--INEAIFSANRL 613 (699)
T ss_dssp EEETT--------TTEEEEECSS-S---SCCEEECCCSSSCSSCCCCEEETTEEEEECS--TTTCEEEEETT
T ss_pred EEecC--------CCeEEEEccC-C---CceEEEEecCCcCCCceEeEEECCEEEEEeC--CCCeEEEEEcc
Confidence 76432 2468888876 2 2223333211 11123356667788777763 33467777754
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.015 Score=59.61 Aligned_cols=94 Identities=16% Similarity=0.058 Sum_probs=60.5
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKE 572 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 572 (726)
..|.|+++||+.+.. ..|......| ++.|+.+++++.. ...+++++.+.+..++.. ....
T Consensus 45 ~~~~l~~~hg~~g~~--~~~~~~~~~l---~~~v~~~~~~~~~--------------~~~~~~~~a~~~~~~i~~-~~~~ 104 (316)
T 2px6_A 45 SERPLFLVHPIEGST--TVFHSLASRL---SIPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQ-VQPE 104 (316)
T ss_dssp SSCCEEEECCTTCCS--GGGHHHHHHC---SSCEEEECCCTTS--------------CTTCHHHHHHHHHHHHTT-TCSS
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHhc---CCCEEEEECCCCC--------------CcCCHHHHHHHHHHHHHH-hCCC
Confidence 456788899876543 3466555555 3889999998210 123567766655555533 1123
Q ss_pred CcEEEEEecccHHHHHHHHHcCC---Cc---eeEEEEeCC
Q 004866 573 HKLAGWGYSAGGLLVAAAINCCP---DL---FRAVVLEVP 606 (726)
Q Consensus 573 ~ri~i~G~S~GG~l~~~~~~~~p---~~---f~a~v~~~p 606 (726)
.++.++|||+||.++..++.+.+ +. ++.+++..+
T Consensus 105 ~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~ 144 (316)
T 2px6_A 105 GPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDG 144 (316)
T ss_dssp CCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESC
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcC
Confidence 67999999999999998887643 34 667776554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.49 Score=53.10 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=111.9
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec--ccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS--KPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~--~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.++.+++++++|.++ |..+. .|+.+++++..... ... .....+++..+.++.||++.. ....|.+.++.
T Consensus 43 ~~ld~~~~~~~ly~s-D~~~~---~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~----~~~~I~v~~~d 114 (619)
T 3s94_A 43 AAVDFVFSHGLIYWS-DVSEE---AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS----ETNRIEVSNLD 114 (619)
T ss_dssp EEEEEETTTTEEEEE-ETTTT---EEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEET----TTTEEEEEETT
T ss_pred EEEEEEeCCCEEEEE-ECCCC---eEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeC----CCCEEEEEECC
Confidence 355789988888665 65543 48888888763211 111 234567888888899999843 23589999987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCEEEEEe
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~l~~~t 279 (726)
+....+++......+. ++++.|.+.+|+|+... ....|+..++++ ...+.+.... ......++++++.||+.-
T Consensus 115 G~~~~~l~~~~l~~P~--~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG--~~~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 115 GSLRKVLFWQELDQPR--AIALDPSSGFMYWTDWG-EVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp SCSCEEEECSSCSCCC--CEEEETTTTEEEEEECS-SSCEEEEEETTS--CSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCCCc--eEEEecCCCeEEEeccC-CCCEEEEEECCC--CceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 6543344322223332 56788888899888743 246899999876 3333443221 122345677788888863
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
.. +..|.+++++ ... -+.++.. ......++.+++++||++-. +...|.+++..++
T Consensus 190 ~~--------~~~I~~~~~d-G~~---~~~~~~~-~~~~P~gi~~~~~~ly~td~--~~~~V~~~d~~tg 244 (619)
T 3s94_A 190 AK--------LNFIHKSNLD-GTN---RQAVVKG-SLPHPFALTLFEDILYWTDW--STHSILACNKYTG 244 (619)
T ss_dssp TT--------TCCEEEESSS-CCE---EC----------CCCEEESSSEEEEECT--TTCSEEEEESSSC
T ss_pred CC--------CCeEEEecCC-CCc---cEEEEeC-CCCCceEEEEeCCEEEEecC--CCCEEEEEECCCC
Confidence 32 2458888887 211 1122221 11122356677787766543 3446777776543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.99 Score=43.61 Aligned_cols=192 Identities=12% Similarity=0.037 Sum_probs=102.7
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
++.+++ ..| |.+. +....+.|.++|+++|+.+.... .....+-.-+++++.||... ++...++.+|..+.+
T Consensus 25 GL~~~~--~~L-yest-G~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~lt----w~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 25 GLFYLR--GHL-YEST-GETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLT----WRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEET--TEE-EEEE-CCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----SSSSEEEEEETTTTE
T ss_pred cEEEEC--CEE-EEEC-CCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEE----eeCCEEEEEECCcCc
Confidence 445665 455 4433 22224579999999999876433 23333334455678887763 556789999998875
Q ss_pred -ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE----EeeeecCCEEEEEe
Q 004866 205 -EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH----CIVEHHEGFLYLFT 279 (726)
Q Consensus 205 -~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~----~~~~~~g~~l~~~t 279 (726)
...+-+ +... ..+++|++.|+++. .+++|+.+|.++.. ....+.-...+.. -.++..++.+|.-.
T Consensus 97 ~~~ti~~--~~~G----wglt~dg~~L~vSd---gs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 97 PRARFRY--PGEG----WALTSDDSHLYMSD---GTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp EEEEEEC--SSCC----CEEEECSSCEEEEC---SSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEEEEeC--CCCc----eEEeeCCCEEEEEC---CCCeEEEEeCCCCe-EEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 333222 2222 24467899887653 26789999998742 2222322211111 11223466677544
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEE---ee------cCCCceEEEEeeeC--CEEEEEEEeCCeeEEEEEec
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESV---FI------DDQGLVVEDVDFCK--THMALILREGRTYRLCSVSL 346 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v---~~------~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l 346 (726)
... -.|.++|.. +.....+-.+ .+ ......+.+++... ++|+++... -+.++.+.+
T Consensus 167 w~s--------~~I~vIDp~-tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~--wp~~~~v~~ 233 (243)
T 3mbr_X 167 WLT--------SRIARIDPA-SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR--WPMLYEIRL 233 (243)
T ss_dssp TTT--------TEEEEECTT-TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT--CSEEEEEEE
T ss_pred CCC--------CeEEEEECC-CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC--CCcEEEEEE
Confidence 332 247788765 2111111111 00 11233577777763 677766432 355555543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.06 E-value=1.9 Score=45.67 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=95.8
Q ss_pred CCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeE
Q 004866 131 PDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDAL 208 (726)
Q Consensus 131 PDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~l 208 (726)
.+++.|+... .+| .|+++|+.+++.+.... ...+..+.| |++.|+....+ ..|.++++.++.. ..
T Consensus 207 ~~~~~l~s~s-~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-----g~i~iwd~~~~~~-~~ 273 (445)
T 2ovr_B 207 LHEKRVVSGS-RDA----TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD-----FMVKVWDPETETC-LH 273 (445)
T ss_dssp EETTEEEEEE-TTS----EEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT-----SCEEEEEGGGTEE-EE
T ss_pred ecCCEEEEEe-CCC----EEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC-----CEEEEEECCCCcE-eE
Confidence 3567776653 444 59999999987664322 234455666 77777665432 3688888876531 11
Q ss_pred EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCC
Q 004866 209 LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEA 288 (726)
Q Consensus 209 v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~ 288 (726)
.+...... ...+.+ |+++|+..+.+ ..|.++|+.++. ....+. ........+..+++.++..+. ++
T Consensus 274 ~~~~~~~~-v~~~~~--~~~~l~~~~~d---~~i~i~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~l~~~~~-dg----- 339 (445)
T 2ovr_B 274 TLQGHTNR-VYSLQF--DGIHVVSGSLD---TSIRVWDVETGN-CIHTLT-GHQSLTSGMELKDNILVSGNA-DS----- 339 (445)
T ss_dssp EECCCSSC-EEEEEE--CSSEEEEEETT---SCEEEEETTTCC-EEEEEC-CCCSCEEEEEEETTEEEEEET-TS-----
T ss_pred EecCCCCc-eEEEEE--CCCEEEEEeCC---CeEEEEECCCCC-EEEEEc-CCcccEEEEEEeCCEEEEEeC-CC-----
Confidence 22222222 234444 88888766653 358888987742 222222 222223344556775555443 21
Q ss_pred CCeEEEEeeCCCCCCCCCceEEeec-CCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 289 DNHYLLRCPVDASFPSRTWESVFID-DQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
.|...++. . ......+..+ .....+..+.+.+ .++++...+| .|.++++.++
T Consensus 340 ---~i~vwd~~-~--~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg--~v~iwd~~~~ 392 (445)
T 2ovr_B 340 ---TVKIWDIK-T--GQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDG--TVKLWDLKTG 392 (445)
T ss_dssp ---CEEEEETT-T--CCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTS--EEEEEETTTC
T ss_pred ---eEEEEECC-C--CcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCC--eEEEEECCCC
Confidence 24444554 2 1111222111 1234466666655 4455556666 4556676654
|
| >1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.034 Score=60.26 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=71.2
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHC--------------------CcEEEEEcc-CC
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR--------------------GWVVAFADV-RG 533 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--------------------G~~v~~~d~-RG 533 (726)
+..+-.|.+...+.......|++|+++||||.+.. .-.|.+. -..++.+|. +|
T Consensus 48 ~~~lfy~~~~~~~~~~~~~~Pl~lwlnGGPG~SS~------~g~~~e~GP~~~~~~~~l~~n~~sw~~~~n~lfiDqPvG 121 (483)
T 1ac5_A 48 DLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSM------DGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTG 121 (483)
T ss_dssp CCEEEEEEEECSCSGGGSSCCEEEEECCTTTBCTH------HHHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCSTT
T ss_pred CceEEEEEEEecCCCCCcCCCEEEEECCCCchHhh------hhhHhhcCCeEecCCCceeecccchhhcCCeEEEecCCC
Confidence 56777776644321123457999999999996521 1122222 257889996 55
Q ss_pred CCCCCCcccccc-cc--cCCCCc----HHHHHHHH-HHHHHcCCCCCCcEEEEEecccHHHHHHHHHc-----------C
Q 004866 534 GGGGGKKWHHDG-RR--TKKLNS----IKDFISCA-RFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC-----------C 594 (726)
Q Consensus 534 ~g~~g~~~~~~~-~~--~~~~~~----~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~-----------~ 594 (726)
.| +...-.... .. ...... ..|+...+ +|+...+..-..++.|+|.||||..+..++.. .
T Consensus 122 tG-fSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~~~~~fP~~~~~~~~i~GeSYgg~y~p~~a~~i~~~n~~~~~~~ 200 (483)
T 1ac5_A 122 TG-FSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDG 200 (483)
T ss_dssp ST-TCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred cc-ccCCcCcccccccccccCCCHHHHHHHHHHHHHHHHHhChhhcCCCEEEEeccccccccHHHHHHHHHhcccccccC
Confidence 55 322211100 00 001112 23333333 33333333345789999999999988776632 0
Q ss_pred C-CceeEEEEeCCccccc
Q 004866 595 P-DLFRAVVLEVPFLDAT 611 (726)
Q Consensus 595 p-~~f~a~v~~~p~~d~~ 611 (726)
+ =-+++++...|++|..
T Consensus 201 ~~inLkGi~IGNg~~d~~ 218 (483)
T 1ac5_A 201 DTYDLKALLIGNGWIDPN 218 (483)
T ss_dssp SCCEEEEEEEEEECCCHH
T ss_pred cccceeeeEecCCcccch
Confidence 1 1367888877877643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.00 E-value=0.28 Score=49.24 Aligned_cols=158 Identities=9% Similarity=0.013 Sum_probs=86.2
Q ss_pred eeceeeCCCCCEEEEEEeCCC-----------CcEEEEEEEECCCCceecccc-ccccceeEEe----cCCCEEEEEEec
Q 004866 124 EELSEVSPDHKFLAYTMYDKD-----------NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWA----KDGQALIYVVTD 187 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g-----------~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~Ws----pDg~~l~y~~~~ 187 (726)
+..+.++|||+.. ++....+ .....|+.+|.+ |+...... ......++|+ |||+.||++...
T Consensus 119 ~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~ 196 (314)
T 1pjx_A 119 CNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP 196 (314)
T ss_dssp CCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred CcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC
Confidence 4466889999743 3322110 011468889887 65443322 2234578999 999888877422
Q ss_pred CCCCCceEEEEEcC-CCC-cee-EEeeecCC--ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC
Q 004866 188 QNKRPYQIYCSIIG-STD-EDA-LLLEESNE--NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG 262 (726)
Q Consensus 188 ~~~~~~~l~~~~l~-t~~-~~~-lv~~~~d~--~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 262 (726)
...|+++++. ++. ... ....-... ....++.+++||+.. +.... ...|+++|.+++. ....+.....
T Consensus 197 ----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~~~--~~~i~~~d~~~g~-~~~~~~~~~~ 268 (314)
T 1pjx_A 197 ----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL-VANWG--SSHIEVFGPDGGQ-PKMRIRCPFE 268 (314)
T ss_dssp ----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE-EEEET--TTEEEEECTTCBS-CSEEEECSSS
T ss_pred ----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE-EEEcC--CCEEEEEcCCCCc-EeEEEeCCCC
Confidence 3478888875 332 111 12111111 223467889999643 43321 2468889887432 2233322212
Q ss_pred c-eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 263 L-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 263 ~-~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
. ....++++|+.||+.+... ..|++++++
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~--------~~l~~~~~~ 298 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHEN--------NAVWKFEWQ 298 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTT--------TEEEEEECS
T ss_pred CceeEEECCCCCEEEEEeCCC--------CeEEEEeCC
Confidence 1 2234467888788776543 237777765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.048 Score=64.56 Aligned_cols=114 Identities=5% Similarity=0.046 Sum_probs=73.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc----------c---cccccceeEEecCCCEEEEEEecCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK----------P---QAVRVSNIAWAKDGQALIYVVTDQN 189 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~----------~---~~~~~~~~~WspDg~~l~y~~~~~~ 189 (726)
.+..++|||||++|+... .+| .|++||+++++.... . ....+..++|+|++..++.+...+
T Consensus 100 ~V~~v~~sp~g~~l~sgs-~dg----~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d- 173 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGL-QNG----SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY- 173 (902)
T ss_dssp CEEEEECCTTCSEEEEEE-TTS----CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS-
T ss_pred CEEEEEECCCCCEEEEEc-CCC----cEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC-
Confidence 356778999999998874 455 399999999875311 0 123567899999865555554332
Q ss_pred CCCceEEEEEcCCCCceeEEeeec-----------------CCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 190 KRPYQIYCSIIGSTDEDALLLEES-----------------NENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 190 ~~~~~l~~~~l~t~~~~~lv~~~~-----------------d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
..| ++++.++.. ...+... .......+.|+|||++|+..+.++ .|.++|+.++
T Consensus 174 ---g~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg---~i~lWd~~~g 243 (902)
T 2oaj_A 174 ---VTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN---SLVFWDANSG 243 (902)
T ss_dssp ---CEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC---CEEEEETTTC
T ss_pred ---CcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCC
Confidence 357 889877642 1122211 012345789999999987665543 5788888763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.19 Score=50.91 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=84.2
Q ss_pred EeeceeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceec--ccc---ccccceeEEecCC-----------------
Q 004866 123 YEELSEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCS--KPQ---AVRVSNIAWAKDG----------------- 178 (726)
Q Consensus 123 ~~~~~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~--~~~---~~~~~~~~WspDg----------------- 178 (726)
.+..++|||| |+.||-.. .+| .|+++|+.++.... ... ...+..+.|+|++
T Consensus 105 ~V~~v~~~p~~~g~~lasgs-~D~----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGS-SDG----AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYI 179 (316)
T ss_dssp CCCEEEECCTTTCSCEEEEC-SSS----CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCC
T ss_pred ceEEEEECCCCCCcEEEEEc-CCC----CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCcccc
Confidence 4667789998 77777653 344 38999998764221 111 2345678999984
Q ss_pred CEEEEEEecCCCCCceEEEEEcCCCCceeEE--eeecCCceEEEEEEcCCC----cEEEEEEcCCCceEEEEEeCCCCC-
Q 004866 179 QALIYVVTDQNKRPYQIYCSIIGSTDEDALL--LEESNENVYVNIRHTKDF----HFVCVHTFSTTSSKVFLINAADPF- 251 (726)
Q Consensus 179 ~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv--~~~~d~~~~~~~~~s~Dg----~~l~~~~~~~~~~~l~~~d~~~~~- 251 (726)
+.|+-. . ....|.++++.+...-..+ +.. .......+.|+|++ +.|+..+.+ ..|.++++.+..
T Consensus 180 ~~l~sg-s----~D~~v~lWd~~~~~~~~~~~~l~~-h~~~V~~v~~sp~~~~~~~~las~s~D---~~v~iw~~~~~~~ 250 (316)
T 3bg1_A 180 KRFASG-G----CDNLIKLWKEEEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQD---GRVFIWTCDDASS 250 (316)
T ss_dssp CBEECC-B----TTSBCCEEEECTTSCEEEEECCBC-CSSCEEEEECCCCSSCSCCEEEEEETT---CEEEEEECSSTTC
T ss_pred ceEEEe-c----CCCeEEEEEeCCCCccceeeeccc-CCCceEEEEecCCCCCCCceEEEEcCC---CeEEEEEccCccc
Confidence 333222 1 1224555566433211112 221 12234568999997 555544432 356677765521
Q ss_pred --CCeEEeeccCCce-EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE
Q 004866 252 --SGLTLIWECEGLA-HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV 310 (726)
Q Consensus 252 --~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 310 (726)
...+.+......+ ...++++|..|+..+. ++ ..+|+..... +.|..+
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D~------~v~lw~~~~~-----g~~~~~ 300 (316)
T 3bg1_A 251 NTWSPKLLHKFNDVVWHVSWSITANILAVSGG-DN------KVTLWKESVD-----GQWVCI 300 (316)
T ss_dssp CCCBCCEEEECSSCEEEEEECTTTCCEEEEES-SS------CEEEEEECTT-----SCEEEE
T ss_pred cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-CC------eEEEEEECCC-----CcEEEe
Confidence 1122232222222 2345677776655443 22 3567766543 456644
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.33 Score=47.88 Aligned_cols=110 Identities=12% Similarity=-0.023 Sum_probs=66.2
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-cee
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDA 207 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~ 207 (726)
++++|++| |..+...+ .++++|+++++.+.....+.-.....++||++||.+ + ....|+.+|..+.+ ...
T Consensus 71 i~~~g~~l-yv~t~~~~---~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs--~---gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 71 LTLLNEKL-YQVVWLKN---IGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS--D---GTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp EEEETTEE-EEEETTCS---EEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEE--C---SSSEEEEECTTTCCEEEE
T ss_pred EEEeCCEE-EEEEecCC---EEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEE--C---CCCeEEEEECCCCcEEEE
Confidence 45567776 54454333 599999999987654222212345577899998865 2 24589999988876 333
Q ss_pred EEeeecCCc--eEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCC
Q 004866 208 LLLEESNEN--VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPF 251 (726)
Q Consensus 208 lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~ 251 (726)
+.......+ +.-.+.+. || .|+++.. ..++|.++|.+++.
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg-~lyvn~~--~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NG-EVWANIW--QTDCIARISAKDGT 183 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TT-EEEEEET--TSSEEEEEETTTCC
T ss_pred EEECCCCcccccceeEEEE-CC-EEEEecC--CCCeEEEEECCCCc
Confidence 332221111 11245566 66 5665543 34689999998843
|
| >4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.2 Score=49.98 Aligned_cols=138 Identities=14% Similarity=0.044 Sum_probs=79.7
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCC---------------------c
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRG---------------------W 524 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G---------------------~ 524 (726)
..=.+.-.++..+-.|++..+. . ....|+||++-||||.+.. .-.|.+.| .
T Consensus 24 ysGyv~v~~~~~lFywf~es~~-~-p~~~Pl~lWlnGGPGcSS~------~g~~~E~GP~~~~~~~~~l~~N~~sW~~~a 95 (300)
T 4az3_A 24 YSGYLKGSGSKHLHYWFVESQK-D-PENSPVVLWLNGGPGCSSL------DGLLTEHGPFLVQPDGVTLEYNPYSWNLIA 95 (300)
T ss_dssp EEEEEECSTTEEEEEEEECCSS-C-TTTSCEEEEECCTTTBCTH------HHHHHTTSSEEECTTSSCEEECTTCGGGSS
T ss_pred eeeeeecCCCCeEEEEEEEcCC-C-CCCCCEEEEECCCCcHHHH------HHHHhcCCCceecCCCccccccCccHHhhh
Confidence 3334555567788877765443 2 2457999999999996521 11222222 4
Q ss_pred EEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHHcCCCCCCcEEEEEecccHHHHHHHHHc---CCC-cee
Q 004866 525 VVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIVKEHKLAGWGYSAGGLLVAAAINC---CPD-LFR 599 (726)
Q Consensus 525 ~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~---~p~-~f~ 599 (726)
.++.+|.+-+.|+...-.. .....-.....|+...++ |+...+......+.|+|.||||..+-.++.. .+. -++
T Consensus 96 n~lfiD~PvGtGfSy~~~~-~~~~~~~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GESY~G~yvP~~a~~i~~~~~inLk 174 (300)
T 4az3_A 96 NVLYLESPAGVGFSYSDDK-FYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQ 174 (300)
T ss_dssp EEEEECCSTTSTTCEETTC-CCCCBHHHHHHHHHHHHHHHHHHCGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEE
T ss_pred cchhhcCCCcccccccCCC-cccccchhhHHHHHHHHHHHHHhChhhcCCceEEEecCCceeeHHHHHHHHHhCCCcccc
Confidence 5677776655554322110 000011112344444443 4444444455789999999999888776643 232 378
Q ss_pred EEEEeCCcccccc
Q 004866 600 AVVLEVPFLDATN 612 (726)
Q Consensus 600 a~v~~~p~~d~~~ 612 (726)
+++...|++|...
T Consensus 175 G~~iGNg~~d~~~ 187 (300)
T 4az3_A 175 GLAVGNGLSSYEQ 187 (300)
T ss_dssp EEEEESCCSBHHH
T ss_pred cceecCCccCHHH
Confidence 8889999988653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.44 Score=48.96 Aligned_cols=120 Identities=6% Similarity=-0.034 Sum_probs=70.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCC--CcEEEEEEEECCCCceecccc-c-------cccceeEEecCCCEEEEEEecCCCCC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKD--NDYFTLSVRNLNSGALCSKPQ-A-------VRVSNIAWAKDGQALIYVVTDQNKRP 192 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g--~e~~~l~v~dl~tg~~~~~~~-~-------~~~~~~~WspDg~~l~y~~~~~~~~~ 192 (726)
...+++++|||+ .|.+|... .....|+++|+++|+.+.... . .....+++++++..+|++... ....
T Consensus 68 ~p~gv~~d~~g~--L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~-~~~~ 144 (343)
T 2qe8_A 68 TVLGIKSDGNGI--VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA-PDDK 144 (343)
T ss_dssp CEEEEEECSSSE--EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC-SGGG
T ss_pred EeeEEEEcCCCc--EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc-cCCC
Confidence 456778999987 35556430 001259999999998543211 1 123678999887777776321 0123
Q ss_pred ceEEEEEcCCCCceeEEee---------------------ecCC------ceEEEEEEcCCCcEEEEEEcCCCceEEEEE
Q 004866 193 YQIYCSIIGSTDEDALLLE---------------------ESNE------NVYVNIRHTKDFHFVCVHTFSTTSSKVFLI 245 (726)
Q Consensus 193 ~~l~~~~l~t~~~~~lv~~---------------------~~d~------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 245 (726)
..|+++++.++...+.+-. ..+. ...-++++||||++|++..... ..||.+
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~--~~l~~~ 222 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS--TSMYRI 222 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC--SEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC--CeEEEE
Confidence 4788888765532111100 0000 0113688999999998876543 478888
Q ss_pred eC
Q 004866 246 NA 247 (726)
Q Consensus 246 d~ 247 (726)
+.
T Consensus 223 ~~ 224 (343)
T 2qe8_A 223 KS 224 (343)
T ss_dssp EH
T ss_pred EH
Confidence 75
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=1.1 Score=44.50 Aligned_cols=181 Identities=10% Similarity=-0.016 Sum_probs=94.5
Q ss_pred CCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEec-CCCEEEEEEecCCCCCceEEEEEcCCCCce
Q 004866 130 SPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAK-DGQALIYVVTDQNKRPYQIYCSIIGSTDED 206 (726)
Q Consensus 130 SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~l~~~~l~t~~~~ 206 (726)
+.+++.|+... .+| .|+++| .++...... ......+.|+| +++.|+....+ ..|.+++... .
T Consensus 111 ~~~~~~l~~~~-~d~----~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~---~ 175 (313)
T 3odt_A 111 SFQDGVVISGS-WDK----TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD-----KTIKLWQNDK---V 175 (313)
T ss_dssp EEETTEEEEEE-TTS----EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT-----SCEEEEETTE---E
T ss_pred EecCCEEEEEe-CCC----CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC-----CCEEEEecCc---e
Confidence 33788877664 444 488999 444333211 34566788988 88877665432 3577777322 2
Q ss_pred eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEecCcccC
Q 004866 207 ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFTDAAKEG 285 (726)
Q Consensus 207 ~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~~~~~~ 285 (726)
...+..........+.++|+++ ++.... ...|+++|+.++. ....+......+ ...+++++ .|+..+. +
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-d--- 245 (313)
T 3odt_A 176 IKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIKLVDMHTGD-VLRTYEGHESFVYCIKLLPNG-DIVSCGE-D--- 245 (313)
T ss_dssp EEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTS-CEEEEET-T---
T ss_pred EEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEEEEECCchh-hhhhhhcCCceEEEEEEecCC-CEEEEec-C---
Confidence 2233322233345688999999 544333 2468899998742 233333233332 23456666 4443332 2
Q ss_pred CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 286 QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
..|..+++. . .+....+.. ....+..+.+..+.-+++...+|. |+++++.
T Consensus 246 -----g~v~iwd~~-~---~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~dg~--i~iw~~~ 295 (313)
T 3odt_A 246 -----RTVRIWSKE-N---GSLKQVITL-PAISIWSVDCMSNGDIIVGSSDNL--VRIFSQE 295 (313)
T ss_dssp -----SEEEEECTT-T---CCEEEEEEC-SSSCEEEEEECTTSCEEEEETTSC--EEEEESC
T ss_pred -----CEEEEEECC-C---CceeEEEec-cCceEEEEEEccCCCEEEEeCCCc--EEEEeCC
Confidence 235566654 2 222222222 233466666654322445556664 5556654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=1.7 Score=43.80 Aligned_cols=197 Identities=10% Similarity=0.021 Sum_probs=104.1
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---------------------ccccceeEEecCCCEEEEE
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---------------------AVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---------------------~~~~~~~~WspDg~~l~y~ 184 (726)
++.|+|||+.+ |+....+ .|+.+|.++++...... ......+++.+++..||+.
T Consensus 23 ~i~~d~~g~~l-~v~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 23 SFTFDSTNKGF-YTSVQDG----RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp CEECCTTCSSE-EEECTTS----EEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEE-EEEcCCC----eEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 46789998744 4433222 48888888775432110 1123467888744467776
Q ss_pred EecCCCCCceEEEEEcCCCCceeEEeeecCC--ceEEEEEEcC-CCcEEEEEEcC---------------CCceEEEEEe
Q 004866 185 VTDQNKRPYQIYCSIIGSTDEDALLLEESNE--NVYVNIRHTK-DFHFVCVHTFS---------------TTSSKVFLIN 246 (726)
Q Consensus 185 ~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~--~~~~~~~~s~-Dg~~l~~~~~~---------------~~~~~l~~~d 246 (726)
... ..|++++..++....+....... .+..++.+.+ ||+ |++.... .....|+.+|
T Consensus 98 d~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 98 DCY-----YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp ETT-----TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred ECC-----CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEe
Confidence 322 24777776544322222111111 1234678899 885 5555432 1236799999
Q ss_pred CCCCCCCeEEeecc-CCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeee
Q 004866 247 AADPFSGLTLIWEC-EGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFC 325 (726)
Q Consensus 247 ~~~~~~~~~~l~~~-~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~ 325 (726)
..+ +..+.+... .......++++|+.||+.... +.+|++++++ .......+.+. .... ..++.+.
T Consensus 172 ~~~--~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~--------~~~I~~~~~~-~~~~~~~~~~~-~~~g--P~gi~~d 237 (322)
T 2fp8_A 172 PST--KETTLLLKELHVPGGAEVSADSSFVLVAEFL--------SHQIVKYWLE-GPKKGTAEVLV-KIPN--PGNIKRN 237 (322)
T ss_dssp TTT--TEEEEEEEEESCCCEEEECTTSSEEEEEEGG--------GTEEEEEESS-STTTTCEEEEE-ECSS--EEEEEEC
T ss_pred CCC--CEEEEeccCCccCcceEECCCCCEEEEEeCC--------CCeEEEEECC-CCcCCccceEE-eCCC--CCCeEEC
Confidence 876 333333222 112234567788888776432 2358888876 32223333332 2222 5566666
Q ss_pred C-CEEEEEEEe--------CCeeEEEEEecC
Q 004866 326 K-THMALILRE--------GRTYRLCSVSLP 347 (726)
Q Consensus 326 ~-~~lv~~~~~--------~g~~~l~~~~l~ 347 (726)
. +.|++.... .....|.+++.+
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 4 456666544 113467777753
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.77 E-value=1.7 Score=46.21 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=69.7
Q ss_pred eeceeeCCCCCEEEEEEeCCC-CcEEEEEEEECCCCce--eccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKD-NDYFTLSVRNLNSGAL--CSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g-~e~~~l~v~dl~tg~~--~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
...++++|||++|.++ +..+ .....+++++.+++-. ..+........++++|++..||++.. ...+|++++.
T Consensus 181 P~~ia~d~~G~~lyva-d~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~----~~~~V~~~~~ 255 (430)
T 3tc9_A 181 VRTICWTHEADSMIIT-NDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSW----NAGQVFRYDF 255 (430)
T ss_dssp EEEEEECTTSSEEEEE-ECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEET----TTTEEEEEET
T ss_pred cceEEEeCCCCEEEEE-eCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEEC----CCCEEEEEEC
Confidence 3456899999977554 5433 2233466666554321 11111234467889996666888753 3358999998
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.+.... .+.......+-.+++++|||++|++.... ...|+.++.+.
T Consensus 256 ~~~~~~-~~~~~~~~~~P~gia~~pdG~~lyv~d~~--~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETT-PLFTIQDSGWEFHIQFHPSGNYAYIVVVN--QHYILRSDYDW 301 (430)
T ss_dssp TTTEEE-EEEECSSSSCCEEEEECTTSSEEEEEETT--TTEEEEEEEET
T ss_pred CCCcEE-EEEEcCCCCcceeEEEcCCCCEEEEEECC--CCEEEEEeCCc
Confidence 765321 23332222223468899999998887643 34677766543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.42 Score=46.81 Aligned_cols=106 Identities=8% Similarity=-0.076 Sum_probs=65.6
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD- 204 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~- 204 (726)
++.++ |+.| |.+.-.. .. |.++|++||+.+..........-.-+++++.||... ++...++.+|..+.+
T Consensus 59 GL~~~--~~~L-y~stG~~-g~--v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~lt----w~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 59 GLVFH--QGHF-FESTGHQ-GT--LRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLT----WTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEEE--TTEE-EEEETTT-TE--EEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEE----SSSCEEEEEETTTTEE
T ss_pred eEEEE--CCEE-EEEcCCC-CE--EEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEE----ccCCEEEEEECCcCcE
Confidence 34454 5665 4443222 22 999999999876543222222233566788887763 455689999998876
Q ss_pred ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 205 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
...+-+. ... ...++||+.|+++. .++.|+.+|.++.
T Consensus 129 ~~ti~~~--~eG----wGLt~Dg~~L~vSd---Gs~~l~~iDp~T~ 165 (268)
T 3nok_A 129 ERTTRYS--GEG----WGLCYWNGKLVRSD---GGTMLTFHEPDGF 165 (268)
T ss_dssp EEEEECS--SCC----CCEEEETTEEEEEC---SSSEEEEECTTTC
T ss_pred EEEEeCC--Cce----eEEecCCCEEEEEC---CCCEEEEEcCCCC
Confidence 3333322 222 23467899887653 3678999999874
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=3.2 Score=46.44 Aligned_cols=196 Identities=8% Similarity=0.051 Sum_probs=111.0
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--------ccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--------AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--------~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
++.+.+.+++|-|+ |.... .|+..++++.....+.. .....+++....++.||++.. ....|.+
T Consensus 344 ~ld~d~~~~~iy~s-D~~~~---~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~----~~~~I~v 415 (628)
T 4a0p_A 344 AIDYDPLDKQLYWI-DSRQN---MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE----ATNVINV 415 (628)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEET----TTTEEEE
T ss_pred EEEEecCCCeEEEE-ecCcc---eEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcC----CCCEEEE
Confidence 34556666665443 43322 36666666543222111 113456788888999999842 2346888
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CC-ceEEeeeecCCEE
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EG-LAHCIVEHHEGFL 275 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~-~~~~~~~~~g~~l 275 (726)
.++......+++....+. --++++.|...+|+|+........|+..++++ ...+.+... -. .....++++++.|
T Consensus 416 ~~~~G~~~~~l~~~~l~~--Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG--~~~~~l~~~~l~~P~gla~D~~~~~L 491 (628)
T 4a0p_A 416 TRLDGRSVGVVLKGEQDR--PRAVVVNPEKGYMYFTNLQERSPKIERAALDG--TEREVLFFSGLSKPIALALDSRLGKL 491 (628)
T ss_dssp EETTSCEEEEEEECTTCC--EEEEEEETTTTEEEEEEEETTEEEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred EECCCCeEEEEEeCCCCc--eeeEEEecCCCeEEEeecCCCCCeEEEEeCCC--CCcEEEEeccCCCccEEEEeCCCCEE
Confidence 887543222333222222 23677888777888876543334899999976 333444332 11 2234566778888
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
|+.-.. +..|.+++++ . ..+.++....-....++..++++||++-. +...|.+++..+
T Consensus 492 Yw~D~~--------~~~I~~~~~d-G----~~r~~~~~~~~~~P~glav~~~~ly~tD~--~~~~i~~~~k~~ 549 (628)
T 4a0p_A 492 FWADSD--------LRRIESSDLS-G----ANRIVLEDSNILQPVGLTVFENWLYWIDK--QQQMIEKIDMTG 549 (628)
T ss_dssp EEEETT--------TTEEEEEETT-S----CSCEEEECSSCSCEEEEEEETTEEEEEET--TTTEEEEEETTS
T ss_pred EEEeCC--------CCEEEEEeCC-C----CceEEEEcCCCCCcEEEEEECCEEEEEEC--CCCeEEEEECcC
Confidence 876432 2458888887 2 22333333222345678888888887754 344677777544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=2.1 Score=47.89 Aligned_cols=195 Identities=11% Similarity=0.027 Sum_probs=111.3
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
++.+.+.+++|.|+ |.... .|+.++++++....+.. .....+++..+.++.||++.. ....|.+.++.+.
T Consensus 353 ~ld~d~~~~~ly~s-D~~~~---~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~----~~~~I~v~~~~G~ 424 (619)
T 3s94_A 353 AIDYDPVEGYIYWT-DDEVR---AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT----GTDRIEVTRLNGT 424 (619)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEEETTSC
T ss_pred EEEEEcCCCeEEEE-eCCCC---eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeC----CCCcEEEEeCCCC
Confidence 34567766766554 54333 47788887654332221 234456777777889999842 2347888888765
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CC-ceEEeeeecCCEEEEEecC
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EG-LAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~-~~~~~~~~~g~~l~~~t~~ 281 (726)
....++.+..+.+ .++++.|...+|+|+.... ...|+..++++. ..+.+... .. .....++++++.||+.-..
T Consensus 425 ~~~~l~~~~l~~P--~~iavdp~~G~ly~tD~g~-~~~I~r~~~dG~--~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 425 MRKILISEDLEEP--RAIVLDPMVGYMYWTDWGE-IPKIERAALDGS--DRVVLVNTSLGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp SCEEEECTTCCSE--EEEEEETTTTEEEEEECSS-SCEEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEEECCCCCe--eeEEEEcCCCcEEEecCCC-CCEEEEEccCCC--ccEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence 4333332222222 3677888877888876532 467999998763 23334322 11 1234566778888876332
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
+.+|.+++++ . ..-+.++... -....++..++++||++-. +...|.+++..+
T Consensus 500 --------~~~I~~~~~d-G---~~~~~~~~~~-l~~P~glav~~~~ly~tD~--~~~~I~~~~k~~ 551 (619)
T 3s94_A 500 --------TDKIEVMNTD-G---TGRRVLVEDK-IPHIFGFTLLGDYVYWTDW--QRRSIERVHKRS 551 (619)
T ss_dssp --------TTEEEEEESS-S---CCCEEEEECC-CCSSCCEEEETTEEEEECT--TSSCEEEEESSS
T ss_pred --------CCEEEEEecC-C---CceEEEeccC-CCCcEEEEEECCEEEEeec--CCCeEEEEEcCC
Confidence 2468888886 2 2223343322 1122356677787766543 344566666543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.36 Score=49.65 Aligned_cols=120 Identities=9% Similarity=0.115 Sum_probs=68.3
Q ss_pred eceeeCCCCCEEEEEEeC-CCCcEEEEEEEECCCCceecccc--------ccccceeEEecCCCEEEEEEecC-CCCCce
Q 004866 125 ELSEVSPDHKFLAYTMYD-KDNDYFTLSVRNLNSGALCSKPQ--------AVRVSNIAWAKDGQALIYVVTDQ-NKRPYQ 194 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~-~g~e~~~l~v~dl~tg~~~~~~~--------~~~~~~~~WspDg~~l~y~~~~~-~~~~~~ 194 (726)
.++++||||+.++ +..+ .++. ..|+.++ +|+..+... ......+++++||+ ||++.... .....+
T Consensus 20 ~~va~~~~g~~~v-~~~~~~~~~-~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 20 GNITLTPDGRLFL-SLHQFYQPE-MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEECTTSCEEE-EECGGGCCS-CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCE
T ss_pred ceEEECCCCCEEE-EeCCCCCCc-eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCe
Confidence 4567999998643 2222 1121 4577777 565442211 12446789999975 77763210 001358
Q ss_pred EEEEEcCCCC-ceeEEeeec---CCceEEEEEEcCCCcEEEEEEcCC-CceEEEEEeCCC
Q 004866 195 IYCSIIGSTD-EDALLLEES---NENVYVNIRHTKDFHFVCVHTFST-TSSKVFLINAAD 249 (726)
Q Consensus 195 l~~~~l~t~~-~~~lv~~~~---d~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~d~~~ 249 (726)
|+++++.+++ ...+.+.+. ...+..++.+++++..++++.... ....|+++|+.+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 9999998765 322222111 112334678888877777765422 346789999876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.11 Score=57.17 Aligned_cols=140 Identities=8% Similarity=-0.014 Sum_probs=78.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec--ccc-cccccee--EEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS--KPQ-AVRVSNI--AWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~--~~~-~~~~~~~--~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.+..++|||++ .||.+. .+| .|.+||+.+++... ... ...+..+ .|+|||..++.+...+ ..|.+
T Consensus 268 ~v~sv~~s~~~-~lasgs-~Dg----tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D----~tvkl 337 (524)
T 2j04_B 268 LITTFDFLSPT-TVVCGF-KNG----FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD----GYFYI 337 (524)
T ss_dssp CEEEEEESSSS-EEEEEE-TTS----EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT----SEEEE
T ss_pred CEEEEEecCCC-eEEEEe-CCC----EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC----CeEEE
Confidence 35667899875 566553 445 59999999874321 111 3345666 6789884444554332 36788
Q ss_pred EEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEE
Q 004866 198 SIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFL 275 (726)
Q Consensus 198 ~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l 275 (726)
+|+.++. ...+.-...... ...++|+||++.++..+. ...|.++|+.++. ....+......+ ...++|+|..|
T Consensus 338 WD~~~~~~~~~~~~~~~~~~-v~~v~fsp~~~~l~s~~~---d~tv~lwd~~~~~-~~~~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSN-LVPVVYCPQIYSYIYSDG---ASSLRAVPSRAAF-AVHPLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCS-CCCEEEETTTTEEEEECS---SSEEEEEETTCTT-CCEEEEECSSCEEEEECCSSCCBC
T ss_pred EECCCCCcccccccccccCc-ccceEeCCCcCeEEEeCC---CCcEEEEECcccc-cceeeecCCCceEEEEeCCCCCeE
Confidence 8887654 222221111111 124789999998654333 2357888887743 233444444333 23456777755
Q ss_pred EE
Q 004866 276 YL 277 (726)
Q Consensus 276 ~~ 277 (726)
+-
T Consensus 413 ~S 414 (524)
T 2j04_B 413 LA 414 (524)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.071 Score=60.99 Aligned_cols=176 Identities=7% Similarity=0.033 Sum_probs=96.5
Q ss_pred EEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC----CCceeEEeeecCCceEEEEEE
Q 004866 149 TLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS----TDEDALLLEESNENVYVNIRH 223 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t----~~~~~lv~~~~d~~~~~~~~~ 223 (726)
.|+++++++++...+.. ......++|.+++..||++.. ...+|+++++.+ .....++......+ .++++
T Consensus 387 ~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~----~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P--~glav 460 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDIQAP--DGLAV 460 (699)
T ss_dssp C-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCT----TTTSBEEEESCCCCC-CCCCCBCCSCC--C--CCEEC
T ss_pred ceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEec----CCCeEEEEecCCCCCCcceEEEEeCCCCCc--ceEEE
Confidence 48889998887665433 345678999999889988732 234788888865 22222221111111 24566
Q ss_pred cCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--CceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCC
Q 004866 224 TKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDAS 301 (726)
Q Consensus 224 s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~ 301 (726)
.+.++.|++... ....|+++++++ ...+.+.... ......+++.++.||+. +... +.+|++++++ .
T Consensus 461 D~~~g~LY~tD~--~~~~I~v~d~dg--~~~~~l~~~~~~~P~giavDp~~g~ly~t-d~~~------~~~I~~~~~d-G 528 (699)
T 1n7d_A 461 DWIHSNIYWTDS--VLGTVSVADTKG--VKRKTLFREQGSKPRAIVVDPVHGFMYWT-DWGT------PAKIKKGGLN-G 528 (699)
T ss_dssp CCSSSBCEECCT--TTSCEEEEBSSS--CCEEEECCCSSCCCCCEECCSSSSCCEEC-CCSS------SCCEEBCCSS-S
T ss_pred EeeCCcEEEEec--cCCeEEEEecCC--CceEEEEeCCCCCcceEEEccCCCcEEEc-ccCC------CCeEEEEeCC-C
Confidence 666677776532 235688999876 3333333221 12233566777777764 3221 2458888776 2
Q ss_pred CCCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 302 FPSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 302 ~~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
...+.++.. .-....++.+. +++||++-. +..+|.+++++.
T Consensus 529 ---~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG 571 (699)
T 1n7d_A 529 ---VDIYSLVTE-NIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNG 571 (699)
T ss_dssp ---CCCCEESCS-SCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSS
T ss_pred ---CCeeEEEeC-CCCCccEEEEeccCCEEEEEec--CCCeEEEEccCC
Confidence 112222211 11122345554 567777653 446788888763
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.25 Score=52.77 Aligned_cols=155 Identities=11% Similarity=0.074 Sum_probs=87.6
Q ss_pred eceeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 125 ELSEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 125 ~~~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
..++|+|| +..| |..+.. ..|+.+|+++|+...+.. ......++|++||+ ||++..........++..+..
T Consensus 142 ~gvavd~~s~~g~L-yv~D~~----~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 142 WRMMFDPNSNYDDL-YWVGQR----DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CEEEECTTTTTCEE-EEECBT----SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred ceEEEccccCCCEE-EEEeCC----CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 35679995 4444 555654 259999999887665433 33456799999999 877753221122345555543
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe-EEeec-cCC--ceEEeeeecCCEEEE
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL-TLIWE-CEG--LAHCIVEHHEGFLYL 277 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~-~~~--~~~~~~~~~g~~l~~ 277 (726)
..............+ .+++++|++..|++... ....|++++.+++ .. ..+.. ... .....++++|+.||+
T Consensus 216 ~~~~~~~~~~~~~~P--~giavd~~~G~lyv~d~--~~~~V~~~d~~~g--~~~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 216 SGFTERLSLCNARGA--KTCAVHPQNGKIYYTRY--HHAMISSYDPATG--TLTEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp GTTCCEEEEEECSSB--CCCEECTTTCCEEECBT--TCSEEEEECTTTC--CEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred CCeeccccccccCCC--CEEEEeCCCCeEEEEEC--CCCEEEEEECCCC--eEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 322211121111112 24677885556666543 2357999998763 33 22221 111 123566788888887
Q ss_pred EecCcccCCCCCCeEEEEeeCC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.-.. +.+|++++.+
T Consensus 290 ad~~--------~~~I~~~~~d 303 (433)
T 4hw6_A 290 IYNG--------KHCIYRVDYN 303 (433)
T ss_dssp EETT--------TTEEEEEEBC
T ss_pred EeCC--------CCEEEEEeCC
Confidence 6432 2457787764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.69 Score=50.70 Aligned_cols=191 Identities=6% Similarity=-0.025 Sum_probs=97.9
Q ss_pred eeceeeCCC------CCEEEEEEeCCCCcEEEEEEEECCCCcee-----c-------ccc-ccccceeEEecCCCEEEEE
Q 004866 124 EELSEVSPD------HKFLAYTMYDKDNDYFTLSVRNLNSGALC-----S-------KPQ-AVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 124 ~~~~~~SPD------G~~la~~~~~~g~e~~~l~v~dl~tg~~~-----~-------~~~-~~~~~~~~WspDg~~l~y~ 184 (726)
+..++|||+ |+.||-+. .+| .|.++|+.+++.. . +.. ...+..++|+|++ .|+..
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s-~Dg----tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVS-QEG----TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEE-TTS----CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred EEEEEECCCCCCCCCCceEEEEe-cCC----eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 556789997 56777664 445 4999999887522 0 101 2356789999875 45444
Q ss_pred EecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEE--EEcCCC-cEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC
Q 004866 185 VTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNI--RHTKDF-HFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE 261 (726)
Q Consensus 185 ~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~--~~s~Dg-~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 261 (726)
..| ..|.++|+.++......+...... ...+ .++++| +.|+ +...+ ..|.++|+.++. ....+....
T Consensus 284 s~D-----gtV~lWD~~~~~~~~~~~~~H~~~-V~sv~~~~s~~g~~~la-S~S~D--~tvklWD~~~~~-~~~~~~~~~ 353 (524)
T 2j04_B 284 FKN-----GFVAEFDLTDPEVPSFYDQVHDSY-ILSVSTAYSDFEDTVVS-TVAVD--GYFYIFNPKDIA-TTKTTVSRF 353 (524)
T ss_dssp ETT-----SEEEEEETTBCSSCSEEEECSSSC-EEEEEEECCTTSCCEEE-EEETT--SEEEEECGGGHH-HHCEEEEEC
T ss_pred eCC-----CEEEEEECCCCCCceEEeeccccc-EEEEEEEcCCCCCeEEE-EeccC--CeEEEEECCCCC-ccccccccc
Confidence 322 378889997654222223222222 2344 578888 5544 44332 357777876532 112222222
Q ss_pred C---ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCC
Q 004866 262 G---LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGR 337 (726)
Q Consensus 262 ~---~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g 337 (726)
. .....++|++..|+. +..++ ..+| .++. .. .....+..+. ..+..+.+.. +.++++...+|
T Consensus 354 ~~~~v~~v~fsp~~~~l~s-~~~d~------tv~l--wd~~-~~--~~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIY-SDGAS------SLRA--VPSR-AA--FAVHPLVSRE--TTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp SCCSCCCEEEETTTTEEEE-ECSSS------EEEE--EETT-CT--TCCEEEEECS--SCEEEEECCSSCCBCEEEETTT
T ss_pred ccCcccceEeCCCcCeEEE-eCCCC------cEEE--EECc-cc--ccceeeecCC--CceEEEEeCCCCCeEEEEECCC
Confidence 1 123456777776443 22221 2334 4544 21 1123333332 2345555443 34555666776
Q ss_pred eeEEEEEec
Q 004866 338 TYRLCSVSL 346 (726)
Q Consensus 338 ~~~l~~~~l 346 (726)
.-+ ++++
T Consensus 420 tv~--lwd~ 426 (524)
T 2j04_B 420 SLI--ITNA 426 (524)
T ss_dssp EEE--CCBS
T ss_pred EEE--EEec
Confidence 544 4554
|
| >1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.12 Score=50.86 Aligned_cols=143 Identities=11% Similarity=0.010 Sum_probs=76.7
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc-cchHH----------------HHHHHHCCcEEEEE
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-RWRSE----------------LKSLLDRGWVVAFA 529 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~----------------~~~l~~~G~~v~~~ 529 (726)
.+.+....|..+-.|++..... .....|++|+++||||.+... ....+ -..|.+ -..++.+
T Consensus 28 yv~v~~~~~~~lFywf~es~~~-~p~~~Pl~lWlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~SW~~-~anllfi 105 (270)
T 1gxs_A 28 YVTIDDNNGRALYYWFQEADTA-DPAAAPLVLWLNGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNK-AANILFA 105 (270)
T ss_dssp EEEEETTTTEEEEEEEECCCSS-CGGGSCEEEEEECTTTBCTTTTHHHHTTSSEEECTTSSCEEECTTCGGG-TSEEEEE
T ss_pred EEEcCCCCCcEEEEEEEEecCC-CCCCCCEEEEecCCCcccchhhhhHHhccCceecCCCCcceeCccchhc-cccEEEE
Confidence 4555555677788776644122 224579999999999966422 11000 011222 2578889
Q ss_pred ccCCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHHcCCCCCCcEEEEEecccHHHHHH---HHHcC---C-CceeEE
Q 004866 530 DVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIVKEHKLAGWGYSAGGLLVAA---AINCC---P-DLFRAV 601 (726)
Q Consensus 530 d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~---~~~~~---p-~~f~a~ 601 (726)
|.+-+.|+...-........-.....|+...++ |+.+.+.....++.|+|.| |=++... +..+. + =-++++
T Consensus 106 DqPvGtGfSy~~~~~~~~~~d~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GES-G~yvP~la~~i~~~n~~~~~inLkGi 184 (270)
T 1gxs_A 106 ESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES-GHFIPQLSQVVYRNRNNSPFINFQGL 184 (270)
T ss_dssp CCSTTSTTCEESSGGGGCCCHHHHHHHHHHHHHHHHHHCGGGTTSEEEEEEEC-TTHHHHHHHHHHHTTTTCTTCEEEEE
T ss_pred eccccccccCCCCCccccCCcHHHHHHHHHHHHHHHHhChhhcCCCEEEEeCC-CcchHHHHHHHHhccccccceeeeeE
Confidence 955444443221111110000112556665554 4444444455689999999 6443322 22221 1 247899
Q ss_pred EEeCCcccccc
Q 004866 602 VLEVPFLDATN 612 (726)
Q Consensus 602 v~~~p~~d~~~ 612 (726)
++..|++|...
T Consensus 185 ~ign~~~d~~~ 195 (270)
T 1gxs_A 185 LVSSGLTNDHE 195 (270)
T ss_dssp EEESCCCBHHH
T ss_pred EEeCCccChhh
Confidence 99999998653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=95.45 E-value=2.7 Score=42.96 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=57.7
Q ss_pred EeeceeeCCC----CCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEE-------------
Q 004866 123 YEELSEVSPD----HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALI------------- 182 (726)
Q Consensus 123 ~~~~~~~SPD----G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~------------- 182 (726)
.+..+.+||| +++++-... ++.|+++.+|+.+.... ...+...+++|||+.+.
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~-------~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGN-------IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp EEEEECC------CCEEEEEEEE-------EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred ceEEEEECCCccccccEEEeCCC-------eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 4566789999 888877431 24555665555433211 22333444555554322
Q ss_pred EEEecC-------CCCCceEEEEEcCCCCceeEEeeecCC--ceEEEEEEcCCCcEEEEEEcC---------CCceEEEE
Q 004866 183 YVVTDQ-------NKRPYQIYCSIIGSTDEDALLLEESNE--NVYVNIRHTKDFHFVCVHTFS---------TTSSKVFL 244 (726)
Q Consensus 183 y~~~~~-------~~~~~~l~~~~l~t~~~~~lv~~~~d~--~~~~~~~~s~Dg~~l~~~~~~---------~~~~~l~~ 244 (726)
|...+. ......|.+.|+.+++.-. .+...+. .....+++||||+.++..+.+ .....+.+
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~-tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLK-KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEE-EEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEE-EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 111000 0122468888998886222 2222111 122345789999988664432 12345666
Q ss_pred EeCCC
Q 004866 245 INAAD 249 (726)
Q Consensus 245 ~d~~~ 249 (726)
+|..+
T Consensus 265 Wd~~t 269 (356)
T 2w18_A 265 INPKT 269 (356)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 77766
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=95.26 E-value=2.5 Score=41.45 Aligned_cols=191 Identities=9% Similarity=0.006 Sum_probs=93.0
Q ss_pred eeceee-CCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc-c--ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEV-SPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-Q--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~-SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
...+++ +++|+ |.+ .+..++ ..|+++|. +|+.+... . ......++++|||+ ||++.. ....|++++
T Consensus 79 p~~i~~~~~~g~-l~v-~~~~~~--~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~----~~~~i~~~~ 148 (286)
T 1q7f_A 79 PNRVAVVRNSGD-IIV-TERSPT--HQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC----KVMRVIIFD 148 (286)
T ss_dssp EEEEEEETTTTE-EEE-EECGGG--CEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSC-EEEEET----TTTEEEEEC
T ss_pred ceEEEEEcCCCe-EEE-EcCCCC--CEEEEECC-CCcEEEEecCccCCCceEEEEeCCCC-EEEEEC----CCCEEEEEc
Confidence 345567 46665 333 343211 24888994 45443321 1 12446789999997 666532 234788888
Q ss_pred cCCCCceeEEeee-cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--C-ceEEeeeecCCEE
Q 004866 200 IGSTDEDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--G-LAHCIVEHHEGFL 275 (726)
Q Consensus 200 l~t~~~~~lv~~~-~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~-~~~~~~~~~g~~l 275 (726)
.... ....+.. .......++.+++||+ |++... ....|+++|..+ .....+.... . .....++++| .+
T Consensus 149 ~~g~--~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G-~l 220 (286)
T 1q7f_A 149 QNGN--VLHKFGCSKHLEFPNGVVVNDKQE-IFISDN--RAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNG-EI 220 (286)
T ss_dssp TTSC--EEEEEECTTTCSSEEEEEECSSSE-EEEEEG--GGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTC-CE
T ss_pred CCCC--EEEEeCCCCccCCcEEEEECCCCC-EEEEEC--CCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCC-CE
Confidence 5432 1222221 1112234678899998 554433 235788888754 2233332211 1 1223455665 45
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEec
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSL 346 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l 346 (726)
|+.....+ ..|..++.+ ......+..+.......++.+.. +.|++. ..++ .|.++++
T Consensus 221 ~v~~~~~~-------~~i~~~~~~----g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~--~v~v~~~ 278 (286)
T 1q7f_A 221 LIADNHNN-------FNLTIFTQD----GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDY--RLYIYRY 278 (286)
T ss_dssp EEEECSSS-------CEEEEECTT----SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTT--EEEEEEC
T ss_pred EEEeCCCC-------EEEEEECCC----CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCC--eEEEEEc
Confidence 55543221 246666654 11122222222222344555553 466666 3443 4445543
|
| >1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A 1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.028 Score=55.90 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=64.4
Q ss_pred cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEE-EccCCCCCCCCcccccccccCCCCcH
Q 004866 476 ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAF-ADVRGGGGGGKKWHHDGRRTKKLNSI 554 (726)
Q Consensus 476 ~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~-~d~RG~g~~g~~~~~~~~~~~~~~~~ 554 (726)
..+.+++..+.. +.-+||.+||... ....+.+.++.+.. .+.++++ .-+ .|.........
T Consensus 61 ~~~~~~v~~~~~-----~~~iVva~RGT~~---------~~d~l~d~~~~~~~~~~~~~~~----~vh-~Gf~~~~~~~~ 121 (269)
T 1tib_A 61 GDVTGFLALDNT-----NKLIVLSFRGSRS---------IENWIGNLNFDLKEINDICSGC----RGH-DGFTSSWRSVA 121 (269)
T ss_dssp TTEEEEEEEETT-----TTEEEEEECCCSC---------THHHHTCCCCCEEECTTTSTTC----EEE-HHHHHHHHHHH
T ss_pred cCcEEEEEEECC-----CCEEEEEEeCCCC---------HHHHHHhcCeeeeecCCCCCCC----Eec-HHHHHHHHHHH
Confidence 356777777642 2357788888632 23456778888776 5666422 111 11111111234
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEeCCc
Q 004866 555 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPF 607 (726)
Q Consensus 555 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~ 607 (726)
+|+...++.+.++. ...+|.+.|||+||.++..++..... .+++....+|.
T Consensus 122 ~~~~~~~~~~~~~~--~~~~i~l~GHSLGGalA~l~a~~l~~~~~~~~~~tfg~P~ 175 (269)
T 1tib_A 122 DTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPR 175 (269)
T ss_dssp HHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCC
T ss_pred HHHHHHHHHHHHHC--CCceEEEecCChHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 56666666666542 12489999999999999988876442 24444444443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.46 Score=51.26 Aligned_cols=159 Identities=16% Similarity=0.250 Sum_probs=92.6
Q ss_pred eceeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc-----ccceeEE-------ecCCCEEEEEEecCCC-
Q 004866 125 ELSEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV-----RVSNIAW-------AKDGQALIYVVTDQNK- 190 (726)
Q Consensus 125 ~~~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~-----~~~~~~W-------spDg~~l~y~~~~~~~- 190 (726)
..++++| ++..| |+.+.. ...|+++|++++....+.... ....++| ++||++||++......
T Consensus 142 ~~la~dp~~~~~L-yv~~~~---~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 142 GRLAFDPLNKDHL-YICYDG---HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp EEEEEETTEEEEE-EEEEET---EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CEEEEccCCCCEE-EEEECC---CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 3567899 46665 444443 346999999998766543221 3456889 9999988887543211
Q ss_pred -CCceEEEEEcCC-CC-ce---eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC-------CCCC-----
Q 004866 191 -RPYQIYCSIIGS-TD-ED---ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA-------DPFS----- 252 (726)
Q Consensus 191 -~~~~l~~~~l~t-~~-~~---~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~-------~~~~----- 252 (726)
....|++++... +. .. ..+......+. ++..+|++++|++..... ..|+++|++ ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~--giavdp~~g~LYvtd~~~--g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCN--GATIHPINGELYFNSYEK--GQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCC--CEEECTTTCCEEEEETTT--TEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCce--EEEEcCCCCeEEEEECCC--CEEEEEecccccccccCceeecccc
Confidence 134577776544 12 21 01222223332 467799888888877643 469999987 4332
Q ss_pred -----CeEEee-ccCC--ceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 253 -----GLTLIW-ECEG--LAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 253 -----~~~~l~-~~~~--~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
..+.+. .... .....++++|+.||+.-.. +.+|++++.+
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~--------~h~I~kid~d 340 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN--------NHYFMRSDYD 340 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT--------TTEEEEEEEE
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC--------CCEEEEEecC
Confidence 012222 1111 2334567888877776432 3567777654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=2.6 Score=41.28 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=95.1
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
...+.++|||+. |..+..++ .|+++|+ +|+...... ......+++.+||+ |+++.. ....|++++.
T Consensus 101 ~~~i~~~~~g~l--~v~~~~~~---~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~----~~~~i~~~~~ 169 (299)
T 2z2n_A 101 PYGITEGPNGDI--WFTEMNGN---RIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTEN----QNNAIGRITE 169 (299)
T ss_dssp EEEEEECTTSCE--EEEETTTT---EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEET----TTTEEEEECT
T ss_pred ceeeEECCCCCE--EEEecCCc---eEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeC----CCCEEEEEcC
Confidence 345678888863 33333332 4888898 665443321 22456788999985 666532 2347898887
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC--Cc-eEEeeeecCCEEEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE--GL-AHCIVEHHEGFLYL 277 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~-~~~~~~~~g~~l~~ 277 (726)
++....... ........++.++++|+ |++.... ...|+++|. + +....+.... .. ....++++|. +|+
T Consensus 170 -~g~~~~~~~-~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~-~--g~~~~~~~~~~~~~~~~i~~~~~g~-l~v 240 (299)
T 2z2n_A 170 -SGDITEFKI-PTPASGPVGITKGNDDA-LWFVEII--GNKIGRITT-S--GEITEFKIPTPNARPHAITAGAGID-LWF 240 (299)
T ss_dssp -TCCEEEEEC-SSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-T--CCEEEEECSSTTCCEEEEEECSTTC-EEE
T ss_pred -CCcEEEeeC-CCCCCcceeEEECCCCC-EEEEccC--CceEEEECC-C--CcEEEEECCCCCCCceeEEECCCCC-EEE
Confidence 543221111 11122234677899988 4554432 346888988 4 3343332221 11 1223455554 666
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
.+... ..|.+++.+ .....+..+.....+..+...++.|++....+ .|.+++..
T Consensus 241 ~~~~~--------~~i~~~d~~-----g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~---~l~~~~~~ 294 (299)
T 2z2n_A 241 TEWGA--------NKIGRLTSN-----NIIEEYPIQIKSAEPHGICFDGETIWFAMECD---KIGKLTLI 294 (299)
T ss_dssp EETTT--------TEEEEEETT-----TEEEEEECSSSSCCEEEEEECSSCEEEEETTT---EEEEEEEC
T ss_pred eccCC--------ceEEEECCC-----CceEEEeCCCCCCccceEEecCCCEEEEecCC---cEEEEEcC
Confidence 54322 236777653 22232211222233445555445666654422 45555543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=3.8 Score=43.12 Aligned_cols=182 Identities=8% Similarity=0.025 Sum_probs=96.1
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCce
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDED 206 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~ 206 (726)
++.||+.|+.+. .+| .|.++|+.+++.+.... ...+..+.|++ ..|+... . ...|.++++.++...
T Consensus 179 l~~~~~~l~sg~-~dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~----dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 179 LQYDERVIITGS-SDS----TVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCS-K----DRSIAVWDMASPTDI 246 (435)
T ss_dssp EECCSSEEEEEE-TTS----CEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEE-T----TSCEEEEECSSSSCC
T ss_pred EEECCCEEEEEc-CCC----eEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEee-C----CCcEEEEeCCCCCCc
Confidence 444899887764 455 39999999998665322 33556778864 3454443 2 236888888776522
Q ss_pred e--EEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCccc
Q 004866 207 A--LLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKE 284 (726)
Q Consensus 207 ~--lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~ 284 (726)
. ......... ...+.+ ++++|+..+.+ ..|.++|+.++. ....+...... ...+..+++.++..+..+
T Consensus 247 ~~~~~~~~~~~~-v~~~~~--~~~~l~s~~~d---g~i~vwd~~~~~-~~~~~~~~~~~-v~~~~~~~~~l~~g~~dg-- 316 (435)
T 1p22_A 247 TLRRVLVGHRAA-VNVVDF--DDKYIVSASGD---RTIKVWNTSTCE-FVRTLNGHKRG-IACLQYRDRLVVSGSSDN-- 316 (435)
T ss_dssp EEEEEECCCSSC-EEEEEE--ETTEEEEEETT---SEEEEEETTTCC-EEEEEECCSSC-EEEEEEETTEEEEEETTS--
T ss_pred eeeeEecCCCCc-EEEEEe--CCCEEEEEeCC---CeEEEEECCcCc-EEEEEcCCCCc-EEEEEeCCCEEEEEeCCC--
Confidence 1 122222222 223444 88888766553 468889988742 22333322322 233444566555544321
Q ss_pred CCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 285 GQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
.|...++. . ......+. .....+..+.+. +..+++...+|. |.++|+.
T Consensus 317 -------~i~iwd~~-~---~~~~~~~~-~h~~~v~~~~~~-~~~l~sg~~dg~--i~vwd~~ 364 (435)
T 1p22_A 317 -------TIRLWDIE-C---GACLRVLE-GHEELVRCIRFD-NKRIVSGAYDGK--IKVWDLV 364 (435)
T ss_dssp -------CEEEEETT-T---CCEEEEEC-CCSSCEEEEECC-SSEEEEEETTSC--EEEEEHH
T ss_pred -------eEEEEECC-C---CCEEEEEe-CCcCcEEEEEec-CCEEEEEeCCCc--EEEEECC
Confidence 24445554 2 11111222 223346666664 445556666664 4455553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=4.1 Score=42.89 Aligned_cols=186 Identities=8% Similarity=0.044 Sum_probs=98.3
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
.+++||++|+.+. .+| .|.++|+.+++...... ...+..+.| |++.|+....+ ..|.++++.+++.
T Consensus 138 ~~~~d~~~l~~g~-~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d-----g~i~vwd~~~~~~ 205 (435)
T 1p22_A 138 CLQYDDQKIVSGL-RDN----TIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD-----STVRVWDVNTGEM 205 (435)
T ss_dssp EEECCSSEEEEEE-SSS----CEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-----SCEEEEESSSCCE
T ss_pred EEEECCCEEEEEe-CCC----eEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC-----CeEEEEECCCCcE
Confidence 4677999998875 444 39999999998665432 334556666 77766655332 3688889887652
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCe-EEeeccCCceEEeeeecCCEEEEEecCccc
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGL-TLIWECEGLAHCIVEHHEGFLYLFTDAAKE 284 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~ 284 (726)
...+..... ....+.++ +..|+..+.+ ..|.++|+.++.... .............+..+++.++..+..
T Consensus 206 -~~~~~~h~~-~v~~l~~~--~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--- 275 (435)
T 1p22_A 206 -LNTLIHHCE-AVLHLRFN--NGMMVTCSKD---RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--- 275 (435)
T ss_dssp -EEEECCCCS-CEEEEECC--TTEEEEEETT---SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT---
T ss_pred -EEEEcCCCC-cEEEEEEc--CCEEEEeeCC---CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC---
Confidence 122222222 23345554 4555544433 357788887643211 122222222223344467766655442
Q ss_pred CCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 285 GQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
..|...++. . ......+.. ....+..+.+.++ ++++...+| .|.++|+.++
T Consensus 276 ------g~i~vwd~~-~---~~~~~~~~~-~~~~v~~~~~~~~-~l~~g~~dg--~i~iwd~~~~ 326 (435)
T 1p22_A 276 ------RTIKVWNTS-T---CEFVRTLNG-HKRGIACLQYRDR-LVVSGSSDN--TIRLWDIECG 326 (435)
T ss_dssp ------SEEEEEETT-T---CCEEEEEEC-CSSCEEEEEEETT-EEEEEETTS--CEEEEETTTC
T ss_pred ------CeEEEEECC-c---CcEEEEEcC-CCCcEEEEEeCCC-EEEEEeCCC--eEEEEECCCC
Confidence 225555554 2 122222222 2234555666554 455555555 4566776643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.07 E-value=1.9 Score=42.14 Aligned_cols=108 Identities=10% Similarity=-0.002 Sum_probs=65.7
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-cee
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDA 207 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~ 207 (726)
++++|++| |..+-.++ .++++|+++++.+...... ..+..-++|++.||.+. ...+|+.+|..+.+ ...
T Consensus 101 it~~g~~L-y~ltw~~~---~v~V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSd-----Gs~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 101 LASDGERL-YQLTWTEG---LLFTWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSD-----GGTMLTFHEPDGFALVGA 170 (268)
T ss_dssp EEECSSCE-EEEESSSC---EEEEEETTTTEEEEEEECS-SCCCCEEEETTEEEEEC-----SSSEEEEECTTTCCEEEE
T ss_pred EEEeCCEE-EEEEccCC---EEEEEECCcCcEEEEEeCC-CceeEEecCCCEEEEEC-----CCCEEEEEcCCCCeEEEE
Confidence 56788887 55554443 5999999999876543211 12234457898887762 24589999988876 333
Q ss_pred EEeeecCCc--eEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 208 LLLEESNEN--VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 208 lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+........ +.-.+.|. || .|+++... +++|.++|.+++
T Consensus 171 I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~--s~~I~vIDp~TG 211 (268)
T 3nok_A 171 VQVKLRGQPVELINELECA-NG-VIYANIWH--SSDVLEIDPATG 211 (268)
T ss_dssp EECEETTEECCCEEEEEEE-TT-EEEEEETT--CSEEEEECTTTC
T ss_pred EEeCCCCcccccccccEEe-CC-EEEEEECC--CCeEEEEeCCCC
Confidence 322221111 11235565 77 47665543 458999999884
|
| >1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.14 Score=54.11 Aligned_cols=133 Identities=14% Similarity=0.015 Sum_probs=74.2
Q ss_pred CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc-h---H-----H------HHHHHHCCcEEEEEccCCCCCCC
Q 004866 474 DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW-R---S-----E------LKSLLDRGWVVAFADVRGGGGGG 538 (726)
Q Consensus 474 dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~-~---~-----~------~~~l~~~G~~v~~~d~RG~g~~g 538 (726)
.+..+-.|++.... . ....|++|+++||||.+..... . + . -..|.+ -..++.+|.+-+.|+.
T Consensus 26 ~~~~lfy~f~~s~~-~-~~~~Pl~lwlnGGPG~SS~~g~~~e~GP~~~~~~~~l~~n~~sW~~-~an~lfiDqPvGtGfS 102 (421)
T 1cpy_A 26 EDKHFFFWTFESRN-D-PAKDPVILWLNGGPGCSSLTGLFFALGPSSIGPDLKPIGNPYSWNS-NATVIFLDQPVNVGFS 102 (421)
T ss_dssp TTEEEEEEEECCSS-C-TTTSCEEEEECCTTTBCTHHHHTTTTSSEEEETTTEEEECTTCGGG-GSEEECCCCSTTSTTC
T ss_pred CCcEEEEEEEEeCC-C-CCCCCEEEEECCCCchHhHHHHHHccCCcEECCCCceeECCccccc-ccCEEEecCCCccccc
Confidence 46677776654432 2 3467999999999996531100 0 0 0 011222 2457777854444443
Q ss_pred CcccccccccCCCCcHHHHHHHHH-HHHHcCCCCC--CcEEEEEecccHHHHHHHHHc---CC---CceeEEEEeCCccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCAR-FLIEKEIVKE--HKLAGWGYSAGGLLVAAAINC---CP---DLFRAVVLEVPFLD 609 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~--~ri~i~G~S~GG~l~~~~~~~---~p---~~f~a~v~~~p~~d 609 (726)
.. .............|+...++ |+.+.+.... .++.|.|.||||..+..++.. +. =-+++++...|++|
T Consensus 103 y~--~~~~~~~~~~~a~~~~~fl~~~~~~~p~~~~~~~~~yi~GESY~G~y~p~~a~~i~~~n~~~inLkGi~IGNg~~d 180 (421)
T 1cpy_A 103 YS--GSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp EE--SSCCCCSSHHHHHHHHHHHHHHHHHCTTSTTTTCCEEEEEETTHHHHHHHHHHHHTTCSSCSSCCCEEEEESCCCC
T ss_pred CC--CCCCCCChHHHHHHHHHHHHHHHHhCHHhcccCCCEEEEeecccccccHHHHHHHHhccccccceeeEEecCcccC
Confidence 21 11101111123456666554 4444444455 789999999999988776643 11 13688888888887
Q ss_pred cc
Q 004866 610 AT 611 (726)
Q Consensus 610 ~~ 611 (726)
..
T Consensus 181 p~ 182 (421)
T 1cpy_A 181 PL 182 (421)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=94.86 E-value=2.4 Score=41.28 Aligned_cols=114 Identities=10% Similarity=-0.085 Sum_probs=67.0
Q ss_pred ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEE
Q 004866 216 NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLR 295 (726)
Q Consensus 216 ~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~ 295 (726)
.|--++.++ |+ .|+++....+.+.|..+|+++++. ...+.-......--+..++++||.++..+ ..++.
T Consensus 43 ~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~~~~FgeGit~~g~~ly~ltw~~--------~~v~v 111 (262)
T 3nol_A 43 AFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKT-LQQIELGKRYFGEGISDWKDKIVGLTWKN--------GLGFV 111 (262)
T ss_dssp CEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCE-EEEEECCTTCCEEEEEEETTEEEEEESSS--------SEEEE
T ss_pred cccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcE-EEEEecCCccceeEEEEeCCEEEEEEeeC--------CEEEE
Confidence 455678887 54 788777766778999999998531 22222222111122556799999998754 34777
Q ss_pred eeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 296 CPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
+|.+ + ......+-.+..+. ++...++.|+++ +|..+|+.+|..+.
T Consensus 112 ~D~~-t--~~~~~ti~~~~eG~---glt~dg~~L~~S---dGs~~i~~iDp~T~ 156 (262)
T 3nol_A 112 WNIR-N--LRQVRSFNYDGEGW---GLTHNDQYLIMS---DGTPVLRFLDPESL 156 (262)
T ss_dssp EETT-T--CCEEEEEECSSCCC---CEEECSSCEEEC---CSSSEEEEECTTTC
T ss_pred EECc-c--CcEEEEEECCCCce---EEecCCCEEEEE---CCCCeEEEEcCCCC
Confidence 8775 2 11112221122222 333456676655 46678999997654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=94.69 E-value=4.7 Score=42.53 Aligned_cols=184 Identities=9% Similarity=-0.083 Sum_probs=95.9
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
.+++||++|+.+. .+| .|.++|+.+++...... ...+..+.|+ ++.|+....+ ..|.++++.+++.
T Consensus 124 ~~~~~g~~l~sg~-~dg----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-----g~i~vwd~~~~~~ 191 (445)
T 2ovr_B 124 CLQFCGNRIVSGS-DDN----TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTD-----RTLKVWNAETGEC 191 (445)
T ss_dssp EEEEETTEEEEEE-TTS----CEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETT-----SCEEEEETTTTEE
T ss_pred EEEEcCCEEEEEE-CCC----cEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCC-----CeEEEEECCcCcE
Confidence 4778999988764 455 39999999998665332 3355667786 4455444322 3688889877642
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccC
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEG 285 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~ 285 (726)
...+...... ...+.+ +++.|+..+.+ ..|.++|+.++. ....+...... ...+..+++.++..+..+
T Consensus 192 -~~~~~~h~~~-v~~~~~--~~~~l~s~s~d---g~i~~wd~~~~~-~~~~~~~~~~~-v~~~~~~~~~l~~~~~dg--- 259 (445)
T 2ovr_B 192 -IHTLYGHTST-VRCMHL--HEKRVVSGSRD---ATLRVWDIETGQ-CLHVLMGHVAA-VRCVQYDGRRVVSGAYDF--- 259 (445)
T ss_dssp -EEEECCCSSC-EEEEEE--ETTEEEEEETT---SEEEEEESSSCC-EEEEEECCSSC-EEEEEECSSCEEEEETTS---
T ss_pred -EEEECCCCCc-EEEEEe--cCCEEEEEeCC---CEEEEEECCCCc-EEEEEcCCccc-EEEEEECCCEEEEEcCCC---
Confidence 1222222222 223444 56666655543 468888987732 22233222222 223344666655544321
Q ss_pred CCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 286 QEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
. |...++. . ......+. .....+..+.+.+.. +++...+|. +.++|+.++
T Consensus 260 ----~--i~iwd~~-~---~~~~~~~~-~~~~~v~~~~~~~~~-l~~~~~d~~--i~i~d~~~~ 309 (445)
T 2ovr_B 260 ----M--VKVWDPE-T---ETCLHTLQ-GHTNRVYSLQFDGIH-VVSGSLDTS--IRVWDVETG 309 (445)
T ss_dssp ----C--EEEEEGG-G---TEEEEEEC-CCSSCEEEEEECSSE-EEEEETTSC--EEEEETTTC
T ss_pred ----E--EEEEECC-C---CcEeEEec-CCCCceEEEEECCCE-EEEEeCCCe--EEEEECCCC
Confidence 2 3444443 1 11111111 122345566664444 445555554 566776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 726 | ||||
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 1e-25 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 3e-18 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 3e-10 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 8e-10 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 2e-09 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 1e-08 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 8e-07 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 8e-07 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 7e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 7e-06 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 3e-05 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 4e-05 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-04 | |
| d1tcaa_ | 317 | c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Cand | 2e-04 | |
| d1jfra_ | 260 | c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [Ta | 8e-04 | |
| d1k8qa_ | 377 | c.69.1.6 (A:) Gastric lipase {Dog (Canis familiari | 0.001 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 0.003 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 0.003 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 0.004 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 108 bits (269), Expect = 1e-25
Identities = 50/428 (11%), Positives = 124/428 (28%), Gaps = 65/428 (15%)
Query: 16 YMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVL 75
++E + K + ++ + M + + + G +Y + VL
Sbjct: 42 FVEAQNKITVPFLEQCP-IRGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVL 100
Query: 76 CRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKF 135
+ E + LD N ++ S D ++
Sbjct: 101 YVQDSLEGEARV--------------------FLDPNILSDDGTVALRG--YAFSEDGEY 138
Query: 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKPQA-VRVSNIAWAKDGQALIYVVTDQ------ 188
AY + +D+ T+ ++ V+ S +AW DG+ + Y Q
Sbjct: 139 FAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSD 198
Query: 189 -----NKRPYQIYCSIIGSTDEDALLLEESNEN----VYVNIRHTKDFHFVCVHTFSTTS 239
++Y ++G+ + +L E + + + + +
Sbjct: 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV 258
Query: 240 SKVFLINAADPFSGLTLIWECEGLA------HCIVEHHEGFLYLFTDAAKEGQEADNHYL 293
++++ + +G+T I + L + V + T+ + + N+ L
Sbjct: 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTN-----RHSPNYRL 313
Query: 294 LRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKG 353
+ S+ V ++ ++ + L L L
Sbjct: 314 INIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL------- 366
Query: 354 VVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW--N 411
L F V G + + + + +S + P + DL+ +
Sbjct: 367 --ATGALLKIFPLEVGSVV----GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPR 420
Query: 412 IIQQQNML 419
+ ++ +
Sbjct: 421 VFREVTVK 428
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 83.3 bits (204), Expect = 3e-18
Identities = 58/270 (21%), Positives = 100/270 (37%), Gaps = 8/270 (2%)
Query: 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 522
Y Q PS DG +P+ I++ K + +P L+G+G + + + +
Sbjct: 5 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRH 64
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFI-SCARFLIEKEIVKEHKLAGWGYS 581
V GGG + H G + D A +LI++ +L G S
Sbjct: 65 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 124
Query: 582 AGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAI 641
GGLLVA N PDLF V+ +V +D Y I DY +
Sbjct: 125 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKY 184
Query: 642 RNYSPYDNIQ-KDVLYPAVL-VTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699
+ D+ YP++L +T+ + R + K++A ++ K+ L +
Sbjct: 185 SPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHV 244
Query: 700 DIVE-----ENRYLQCKESALETAFLIKMM 724
D + +E + AF+ + +
Sbjct: 245 DTKAGHGAGKPTAKVIEEVSDMFAFIARCL 274
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 60.5 bits (145), Expect = 3e-10
Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 17/166 (10%)
Query: 458 DLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLL--HGHGAYGE-------LL 508
D S Y + +P DG+ + T+I PK P +L + A G +
Sbjct: 17 DASNDYIKREVMIPMRDGVKLH-TVIVLPK--GAKNAPIVLTRTPYDASGRTERLASPHM 73
Query: 509 DKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHH-----DGRRTKKLNSIKDFISCARF 563
+ ++ G++ F DVRG G + +++ D +
Sbjct: 74 KDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDW 133
Query: 564 LIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609
L++ K+ G S G V A+ + V E P +D
Sbjct: 134 LVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMID 179
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 8e-10
Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 8/220 (3%)
Query: 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGA-YGELLDKRWRSELKSLL--DRG 523
+Y D ++P+ I+ + P LL G + + +++ ++++ G
Sbjct: 4 EYRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHG 63
Query: 524 WVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAG 583
VV D RG G G K H+ RR L KD + R +++++ + ++A +G G
Sbjct: 64 AVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYG 123
Query: 584 GLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRN 643
G L + + L L A+ + E D A
Sbjct: 124 GYLSTYILPAKGENQGQTFTCGSALSP-----ITDFKLYASAFSERYLGLHGLDNRAYEM 178
Query: 644 YSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRE 683
+ +++ + + + A+ + ++
Sbjct: 179 TKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIR 218
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 18/167 (10%)
Query: 458 DLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLL----------HGHGAYGEL 507
D Y + VP DG+ + T+I PK P LL
Sbjct: 21 DQQRDYIKREVMVPMRDGVKLY-TVIVIPK--NARNAPILLTRTPYNAKGRANRVPNALT 77
Query: 508 LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG-----RRTKKLNSIKDFISCAR 562
+ + ++ G++ F D+RG G + K + D
Sbjct: 78 MREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVD 137
Query: 563 FLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609
+L+ ++ G S G V A+ + E P +D
Sbjct: 138 WLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVD 184
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 54.6 bits (130), Expect = 1e-08
Identities = 35/237 (14%), Positives = 60/237 (25%), Gaps = 17/237 (7%)
Query: 472 SHDGISVPLTIIYSPKYKKE----NQNPG-------LLHGHGAYGELLDKRWRSELKSLL 520
S G+ V + SP ++ Q+ G LL G A + +
Sbjct: 3 SRPGLPVEYLQVPSPSMGRDIKVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWY 62
Query: 521 DRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCA----RFLIEKEIVKEHKLA 576
D+ + V G W+ + K +L VK A
Sbjct: 63 DQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSA 122
Query: 577 GWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG--D 634
G S P F LD + + ++ L D +
Sbjct: 123 VVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWG 182
Query: 635 IDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691
+ A + P N+ K + + N + A+ E +
Sbjct: 183 PKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNI 239
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 48.7 bits (114), Expect = 8e-07
Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 10/221 (4%)
Query: 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGA-YGELLDKRWRSELKSLL--DR 522
++ D + +I P + K + P LL + + D +R + L
Sbjct: 4 KKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTE 63
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSA 582
+VA D RG G G K H R ++D I AR + V ++A WG+S
Sbjct: 64 NIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSY 123
Query: 583 GGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIR 642
GG + + + +F+ + P G P D+ R
Sbjct: 124 GGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVY-------TERYMGLPTPEDNLDHYR 176
Query: 643 NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRE 683
N + + +L+ + + ++A+ + +
Sbjct: 177 NSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVD 217
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.7 bits (115), Expect = 8e-07
Identities = 32/235 (13%), Positives = 55/235 (23%), Gaps = 16/235 (6%)
Query: 466 EQYDVPS-HDGISVPLTIIYSPKYKKENQNPG--LLHGHGAYGELLDKRWRSELKSLLDR 522
E VPS G + + LL G A + + +
Sbjct: 7 EYLQVPSASMGRDIKVQFQGGG-------PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQ 59
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLI----EKEIVKEHKLAGW 578
+ V G W+ + + + K R + + V A
Sbjct: 60 SGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAV 119
Query: 579 GYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGY--PGDID 636
G S G P F FL+ + + ++ L D +
Sbjct: 120 GLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPS 179
Query: 637 DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKR 691
A + P I + V + N A+ E +
Sbjct: 180 SDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQ 234
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 32/241 (13%), Positives = 57/241 (23%), Gaps = 22/241 (9%)
Query: 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSL 519
++ + S + K +P ++ HG E+ +
Sbjct: 51 ADGVKVYRLTYKSFGNARITGWYAVPDKEGP---HPAIVKYHGYNA--SYDGEIHEMVNW 105
Query: 520 LDRGWVVAFADVRGGGGGGKKWH--------------HDGRRTKKLNSIKDFISCARFLI 565
G+ VRG D D + +
Sbjct: 106 ALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVIS 165
Query: 566 EKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD---ATNTLLYPILPLI 622
+ V E ++ G S GG L AA AV + A + L I
Sbjct: 166 SFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVALEQPYLEI 225
Query: 623 AADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVR 682
+ + G P +Y N+ V P ++ + +
Sbjct: 226 NSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLE 285
Query: 683 E 683
Sbjct: 286 T 286
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.1 bits (108), Expect = 7e-06
Identities = 31/193 (16%), Positives = 50/193 (25%), Gaps = 17/193 (8%)
Query: 466 EQYDVPS-HDGISVPLTIIYSPKYKKENQNPG--LLHGHGAYGELLDKRWRSELKSLLDR 522
E VPS G +P+ + LL A ++ + + L
Sbjct: 5 ENLMVPSPSMGRDIPVAFLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAG 57
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSA 582
+ A G W DG + + L + A G +
Sbjct: 58 KGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDW---LAANRGLAPGGHAAVGAAQ 114
Query: 583 GGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEF---GYPGDIDDFH 639
GG A PD F FL +NT + + G G
Sbjct: 115 GGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQL-G 173
Query: 640 AIRNYSPYDNIQK 652
+ + P+ +
Sbjct: 174 RWKWHDPWVHASL 186
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 20/192 (10%), Positives = 40/192 (20%), Gaps = 23/192 (11%)
Query: 497 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKD 556
LHG E + L +RG+++ D G +
Sbjct: 29 ALHGLQGSKE----HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRV 84
Query: 557 FISCARFLIEKEI----VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612
+ L G S G + + +
Sbjct: 85 ALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVL----------- 133
Query: 613 TLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVW 672
+ G + A+ P + P + + S + +
Sbjct: 134 ----AFIGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLA 189
Query: 673 EAAKWVARVRES 684
K + +R
Sbjct: 190 RMEKTLEALRPH 201
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 12/142 (8%)
Query: 470 VPSHDGISVPLTIIYSPKYKKENQNPGLL--HGHGAYGELLDKRWRSELKSLLDRGWVVA 527
VP DG+ + +Y P + P LL + + + + + G+ V
Sbjct: 10 VPMRDGVRLA-VDLYRPD--ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV 66
Query: 528 FADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLV 587
D RG ++ +I + + + +G S G+
Sbjct: 67 IQDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWC-------DGNVGMFGVSYLGVTQ 119
Query: 588 AAAINCCPDLFRAVVLEVPFLD 609
A +A+ + D
Sbjct: 120 WQAAVSGVGGLKAIAPSMASAD 141
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 43.0 bits (100), Expect = 1e-04
Identities = 29/249 (11%), Positives = 59/249 (23%), Gaps = 11/249 (4%)
Query: 457 NDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSEL 516
ND + + +V + S + + K + L A S
Sbjct: 70 NDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLN 129
Query: 517 KSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK---------LNSIKDFISCARFLIEK 567
L RG+ + G + + + S + K
Sbjct: 130 DYFLTRGFASIYVAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIK 189
Query: 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYE 627
K+A G S G + A + ++ E N + +
Sbjct: 190 ASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYN-YYRENGLVRSPGGF 248
Query: 628 EFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVREST-I 686
+ RN D ++ + Y L + + ++
Sbjct: 249 PGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINT 308
Query: 687 YDPKRPILL 695
K +L+
Sbjct: 309 DKVKADVLI 317
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Score = 41.6 bits (97), Expect = 2e-04
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 15/111 (13%)
Query: 497 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKD 556
L+ G G G + + G+ + + + +
Sbjct: 36 LVPGTGTTG--PQSFDSNWIPLSTQLGYTPCWISPPPFMLNDTQ-----------VNTEY 82
Query: 557 FISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607
++ L + + W S GGL+ + P + V + F
Sbjct: 83 MVNAITALYAGSGNNKLPVLTW--SQGGLVAQWGLTFFPSIRSKVDRLMAF 131
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Score = 39.6 bits (91), Expect = 8e-04
Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 10/178 (5%)
Query: 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDR 522
Y+ Q V S IY P + ++ G W L +
Sbjct: 21 YATSQTSVSSLVASGFGGGTIYYPTSTADGTFGAVVISPGFTAYQSSIAWLGPR--LASQ 78
Query: 523 GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSA 582
G+VV D L S D+++ + + V +L G+S
Sbjct: 79 GFVVFTIDTNTTLDQPDSRGRQ------LLSALDYLTQRSSVRTR--VDATRLGVMGHSM 130
Query: 583 GGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHA 640
GG A L A+ L D T L ++ AD +
Sbjct: 131 GGGGSLEAAKSRTSLKAAIPLTGWNTDKTWPELRTPTLVVGADGDTVAPVATHSKPFY 188
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 13/184 (7%)
Query: 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPG----LLHGHGAYGE--LLDKRWRSEL 516
Y E+Y+V + DG + + I + EN L HG A + + S
Sbjct: 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLA 84
Query: 517 KSLLDRGWVVAFADVRGGGGGGK------KWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570
L D G+ V + RG + + + D + F+++K
Sbjct: 85 FILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQ 144
Query: 571 KEHKLAGWGYSAG-GLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEF 629
+ G G + + + P T ++ +
Sbjct: 145 DKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFK 204
Query: 630 GYPG 633
G
Sbjct: 205 LIFG 208
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 38.1 bits (88), Expect = 0.003
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 9/113 (7%)
Query: 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV---PFLDATNTLLYPILPLIAADYEEFG 630
++ G ++GG + A D+F P+ A N +
Sbjct: 12 SVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSI---T 68
Query: 631 YPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRE 683
P + + N+ + + T S +T G + A++
Sbjct: 69 TPTANMKSWSGNQIASVANLGQR---KIYMWTGSSDTTVGPNVMNQLKAQLGN 118
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 37.5 bits (85), Expect = 0.003
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 11/181 (6%)
Query: 443 ESVNELKSDSDNLWNDLSEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG 502
ES + + D+ N + + +G + L + Y + HG
Sbjct: 5 ESAVQYRPAPDSYLNPCPQAGRIVKETYTGING-TKSLNVYLPYGYDPNKKYNIFYLMHG 63
Query: 503 AYG-ELLDKRWRSELKSLLDRGW--------VVAFADVRGGGGGGKKWHHDGRRTKKLNS 553
E +L+++LD +V GG + ++ + R+
Sbjct: 64 GGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFV 123
Query: 554 IKDFISCA-RFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612
+ + A + G++ GGL + C D + N
Sbjct: 124 ESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGN 183
Query: 613 T 613
+
Sbjct: 184 S 184
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 37.6 bits (86), Expect = 0.004
Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFA 529
+ ++G + + PK +N +L G + +D + + L G+ V
Sbjct: 9 LRVNNGQELHVWE-TPPKENVPFKNNTILIASG-FARRMD-HFAGLAEYLSTNGFHVFRY 65
Query: 530 DVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAA 589
D G + T NS+ + + S +
Sbjct: 66 DSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQT------KGTQNIGLIAASLSARVAYE 119
Query: 590 AINCCPDLFRAVVLEVPFLDATNTL 614
I+ ++ V ++ +TL
Sbjct: 120 VIS--DLELSFLITAVGVVNLRDTL 142
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 726 | |||
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 100.0 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.97 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.92 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.9 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.83 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.83 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.82 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.82 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.82 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.81 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.81 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.81 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.81 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.81 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.8 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.8 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.78 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.77 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.72 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.7 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.7 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.69 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.68 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.67 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.66 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.66 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.66 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.65 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.63 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.62 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.6 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.6 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.6 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.6 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.59 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.59 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.58 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.58 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.56 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.56 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.55 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.55 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.55 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.55 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.55 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.55 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.55 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.54 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.54 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.54 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.54 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.53 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.53 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.52 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.52 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.5 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.48 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.46 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.46 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.44 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.42 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.41 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.4 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.34 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.32 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.26 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.24 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.22 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.15 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.08 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.94 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.91 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.83 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.79 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.76 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.72 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.7 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.7 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.69 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.67 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.67 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 98.63 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.61 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.6 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.58 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.57 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.55 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.52 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.52 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.5 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.5 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.5 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.49 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.49 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.44 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.43 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.37 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.36 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.34 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.33 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.33 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.29 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.26 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.24 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.23 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.22 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.17 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.16 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.15 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.14 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.04 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.02 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.92 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.9 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.82 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.8 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.78 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.72 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.68 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.66 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.58 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.56 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.49 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.48 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.47 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.4 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.33 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.25 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.23 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.12 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.11 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.07 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.06 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.98 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.92 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 96.85 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.82 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.73 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.5 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.48 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.39 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.22 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.19 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.16 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.95 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 95.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.85 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 95.77 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.73 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 95.71 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.65 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.48 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.16 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.82 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 94.34 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 93.45 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 93.21 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.0 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.98 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 92.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 92.34 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 91.75 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 91.75 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 87.26 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 83.75 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 83.67 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.2e-43 Score=386.03 Aligned_cols=372 Identities=13% Similarity=0.158 Sum_probs=304.8
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcccCCCCCCeeECCeEEEEEecCCcceEEEEEEec
Q 004866 1 MSSLNDKVAMRHMDMYMEQEEKYAEAVMSDTERLQSKLQSEMASRLAFELSTPPLRWGPWLYYRRVEEGKQYLVLCRRLV 80 (726)
Q Consensus 1 ~~~~~~~~~~~~v~~~l~~en~~~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~yy~~~~~g~~~~~~~r~~~ 80 (726)
|||.++| +|++||++||+||+++|+++ ++++.|.++|++++..++.++|.+.|+++||.+..++.++..+||+..
T Consensus 31 Led~~~~----~v~~wl~~eN~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g~~y~~~~~~~~~~~~~~~~~~~ 105 (430)
T d1qfma1 31 LEDPDSE----QTKAFVEAQNKITVPFLEQC-PIRGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDS 105 (430)
T ss_dssp GGCTTSH----HHHHHHHHHHHHHHHHHHSS-THHHHHHHHHHHHTCSCEECCCEEETTEEEEEEECSSCSSCEEEEESS
T ss_pred hcCCCCH----HHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhhcCCceeeeEEeCCEEEEEEecCCCccceEEeccc
Confidence 6888888 99999999999999999988 899999999999999899999999999999998888888888887654
Q ss_pred CCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce
Q 004866 81 SLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL 160 (726)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~ 160 (726)
. .+.+++|||+|+++++. .+.+.++.+||||+++||+.+.+|+|.+.|+++|++||+.
T Consensus 106 ~--------------------~~~~evllD~n~la~~~--~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~ 163 (430)
T d1qfma1 106 L--------------------EGEARVFLDPNILSDDG--TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE 163 (430)
T ss_dssp S--------------------SSCCEEEECGGGGCSSS--CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred c--------------------CCCeeeecchhhhcccc--cceecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence 2 26789999999999873 5677888999999999999999999999999999999998
Q ss_pred eccccc-cccceeEEecCCCEEEEEEecC-----------CCCCceEEEEEcCCCC-ceeEEeeecCCc-eEEEEEEcCC
Q 004866 161 CSKPQA-VRVSNIAWAKDGQALIYVVTDQ-----------NKRPYQIYCSIIGSTD-EDALLLEESNEN-VYVNIRHTKD 226 (726)
Q Consensus 161 ~~~~~~-~~~~~~~WspDg~~l~y~~~~~-----------~~~~~~l~~~~l~t~~-~~~lv~~~~d~~-~~~~~~~s~D 226 (726)
+..... ...+.++|++|++.|||++.+. ..++.+||+|++++++ ++++++++.+.. +++.+..|+|
T Consensus 164 ~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d 243 (430)
T d1qfma1 164 LPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD 243 (430)
T ss_dssp EEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred cccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCC
Confidence 876543 3457899999999999998753 3467899999999998 889999988764 5677888999
Q ss_pred CcEEEEEEcCCC--ceEEEEEeCCCCCC------CeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeC
Q 004866 227 FHFVCVHTFSTT--SSKVFLINAADPFS------GLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPV 298 (726)
Q Consensus 227 g~~l~~~~~~~~--~~~l~~~d~~~~~~------~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~ 298 (726)
|++|++.+..+. .+.+|++|+..+.. .+.++..+.....+.+.++|+.||++||.+.. +++|+.+++
T Consensus 244 ~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~-----~~~L~~~~~ 318 (430)
T d1qfma1 244 GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-----NYRLINIDF 318 (430)
T ss_dssp SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCT-----TCEEEEEET
T ss_pred cceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccc-----cceeEEecC
Confidence 999998876654 36899999865332 23556666666666788899999999997653 699999999
Q ss_pred CCCCCCCCceEEeecCCC-ceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCceeeeecC
Q 004866 299 DASFPSRTWESVFIDDQG-LVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPG 377 (726)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 377 (726)
+ +++...|+.|+++.+. ..+..+..++++|++.++++|.++|.++++.++. . ..+.+|.. +++. +
T Consensus 319 ~-~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~------~-----~~~~~~~~-~sv~-~ 384 (430)
T d1qfma1 319 T-DPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA------L-----LKIFPLEV-GSVV-G 384 (430)
T ss_dssp T-BCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC------E-----EEEECCCS-SEEE-E
T ss_pred C-CCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCc------E-----EEecCCCC-ceEe-e
Confidence 8 7777889999987554 4556677788999999999999999999987542 1 12333322 2332 3
Q ss_pred CCCcCCCcEEEEEEccCCCCceEEEEECCCCeE--EEEEeecc
Q 004866 378 PNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW--NIIQQQNM 418 (726)
Q Consensus 378 ~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~--~~~~~~~~ 418 (726)
.+.+++++.++|.++|+++|+.+|.+|+++++. +.++++++
T Consensus 385 ~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~~~~k~~~v 427 (430)
T d1qfma1 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTV 427 (430)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCC
T ss_pred ccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcceeeEeccCC
Confidence 345677889999999999999999999999865 57777766
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=8.4e-33 Score=279.09 Aligned_cols=253 Identities=19% Similarity=0.194 Sum_probs=210.2
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
.+....+.++++|.||.+|++++++|++. .++.|+||++|||++.+....|....+.|+++||+|+.+|+||++++|.
T Consensus 7 ~~~~~~~~v~~~s~dG~~i~~~l~~p~~~--~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~ 84 (260)
T d2hu7a2 7 RSIAGSRLVWVESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGE 84 (260)
T ss_dssp HTEEEEEEEEEECTTSCEEEEEEEEETTS--CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCH
T ss_pred cccCceEEEEEECCCCCEEEEEEEeCCCC--CCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeecccccc
Confidence 34678899999999999999999999864 3678999999998887777788888999999999999999999999999
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCC
Q 004866 540 KWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPIL 619 (726)
Q Consensus 540 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~ 619 (726)
.|.......++...++|+.++++||.+++ ++.+++|+|+|+||++++.++..+|+.++++++.+|+.++.........
T Consensus 85 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~ 162 (260)
T d2hu7a2 85 EWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA 162 (260)
T ss_dssp HHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCH
T ss_pred ccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhccccc
Confidence 99988888888888999999999999875 6789999999999999999999999999999999999987654322111
Q ss_pred CCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCC
Q 004866 620 PLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699 (726)
Q Consensus 620 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 699 (726)
.+..+.........+.+.+.+|+.++++ ++.|+|++||..|..||+.++.+++++|++++++ ..+++++++
T Consensus 163 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~---~~~~~~~g~ 233 (260)
T d2hu7a2 163 -----AFRNFIEQLTGGSREIMRSRSPINHVDR-IKEPLALIHPQNDSRTPLKPLLRLMGELLARGKT---FEAHIIPDA 233 (260)
T ss_dssp -----HHHHHHHHHHCSCHHHHHHTCGGGCGGG-CCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCC---EEEEEETTC
T ss_pred -----ccccccccccccccccccccchhhcccc-cCCCceeeecccCceecHHHHHHHHHHHHHCCCC---eEEEEECcC
Confidence 1111100000113456788999999987 8999999999999999999999999999999854 122228999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 700 DIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
||++...++..+....+++||.+||.
T Consensus 234 ~H~~~~~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 234 GHAINTMEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp CSSCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHhHHHHHHHHHHHHHHHhc
Confidence 99887777777777788999999984
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=4.9e-31 Score=265.69 Aligned_cols=252 Identities=16% Similarity=0.155 Sum_probs=205.0
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc---cchHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK---RWRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~---~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
..|.+.+...||++|.++|++|+++++++++|+||++|||++..... .+......++++||+|+.+|+||++++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~ 81 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDK 81 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHH
T ss_pred CceeEEEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchH
Confidence 36788899999999999999999988888999999999985553322 233455677889999999999999999999
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCC
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP 620 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 620 (726)
|.......++.....|+.+++++++++..+|+++|+++|+|+||.++++++..+|++++++++.++........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (258)
T d2bgra2 82 IMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD------ 155 (258)
T ss_dssp HHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSB------
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccc------
Confidence 99888888888889999999999999999999999999999999999999999999999999888876543211
Q ss_pred CChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCC
Q 004866 621 LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTD 700 (726)
Q Consensus 621 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 700 (726)
........+.+......+.+..++|+..+.+..+.|+|++||+.|++||+.++++++++|+++|++ ..++++++++
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~---~~~~~~~g~~ 231 (258)
T d2bgra2 156 -SVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVD---FQAMWYTDED 231 (258)
T ss_dssp -HHHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCC---CEEEEETTCC
T ss_pred -ccccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCC---EEEEEECCCC
Confidence 011112234443334566788999998888633479999999999999999999999999999865 2233389999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 701 IVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 701 H~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|++.......+....+.+||.++|.
T Consensus 232 H~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 232 HGIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhc
Confidence 9876666666667778999999985
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=4e-29 Score=254.25 Aligned_cols=263 Identities=25% Similarity=0.376 Sum_probs=205.3
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHH-HHHHHCCcEEEEEccCCCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSEL-KSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
+.|++|+|+|++.||.+|+++|++|++.++++++|+||++|||++.+..+.+.... ..++..|++++..++++...++.
T Consensus 3 ~~y~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
T d1qfma2 3 SDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 82 (280)
T ss_dssp GGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHH
T ss_pred ccCEEEEEEEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccch
Confidence 45789999999999999999999999988889999999999999988777775554 45556788888899888887777
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCC
Q 004866 540 KWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPIL 619 (726)
Q Consensus 540 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~ 619 (726)
.+.............++...++.+...+...+..+++++|+|.||+++..++...++++++++..+++.++.........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (280)
T d1qfma2 83 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 162 (280)
T ss_dssp HHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTG
T ss_pred hhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhcccccc
Confidence 77666666666667788888888888888999999999999999999999999999999999999999998765433222
Q ss_pred CCChhhhcccCCCCChhHHHHHHhcCccccccc-----CCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCC--CCCc
Q 004866 620 PLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQK-----DVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYD--PKRP 692 (726)
Q Consensus 620 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~-----~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~--~~~~ 692 (726)
+. ...........+........+|+.++.. ....|+||+||+.|++||+.|+++++++|+++++.. ..++
T Consensus 163 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~ 239 (280)
T d1qfma2 163 HA---WTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNP 239 (280)
T ss_dssp GG---GHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSC
T ss_pred cc---ceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCc
Confidence 21 1112222333344555566666654432 123368888999999999999999999998875431 1245
Q ss_pred EEE--EcCCCCCCCc-hhhHHHHHHHHHHHHHHhhcC
Q 004866 693 ILL--NLTTDIVEEN-RYLQCKESALETAFLIKMMES 726 (726)
Q Consensus 693 ~~~--~~~~gH~~~~-~~~~~~~~~~~~~fl~~~l~~ 726 (726)
+.+ ++++||++.. ..+.++..+++++||.++|+.
T Consensus 240 ~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~ 276 (280)
T d1qfma2 240 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 276 (280)
T ss_dssp EEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 555 8999999876 567788889999999999963
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.1e-31 Score=263.72 Aligned_cols=241 Identities=17% Similarity=0.189 Sum_probs=187.7
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-Cccch--HHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWR--SELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~--~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
.||.+|+++|++|++++.++++|+||++|||++... ...|. ...+.|+++||+|+.+|+||++++|.+|........
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~~ 89 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 89 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCT
T ss_pred eCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhccc
Confidence 499999999999999888889999999999866432 33443 345678999999999999999999999998888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCcccccccccCCCCCCChhh
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDATNTLLYPILPLIAAD 625 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~~~~~~~~~~~~~~~ 625 (726)
+.....|++++++||++++.+|++||+|+|+|+||++++.++...++ .|++.+...|+..+... .....
T Consensus 90 g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 162 (258)
T d1xfda2 90 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLY-------ASAFS 162 (258)
T ss_dssp TTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSS-------BHHHH
T ss_pred hhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecc-------ccccc
Confidence 88889999999999999999999999999999999999998876654 57888877776554311 01111
Q ss_pred hcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc
Q 004866 626 YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN 705 (726)
Q Consensus 626 ~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 705 (726)
...++.+.. ..+.+...+|..++.+..+.|+|++||+.|.+||+.++.+++++|++++++ ..+++++++||++..
T Consensus 163 ~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~---~~~~~~p~~~H~~~~ 237 (258)
T d1xfda2 163 ERYLGLHGL--DNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKAN---YSLQIYPDESHYFTS 237 (258)
T ss_dssp HHHHCCCSS--CCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCC---CEEEEETTCCSSCCC
T ss_pred ccccccccc--chHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCC---EEEEEECCCCCCCCC
Confidence 112233321 112245567777777645778999999999999999999999999999864 223338999998766
Q ss_pred hhhHHHHHHHHHHHHHHhhc
Q 004866 706 RYLQCKESALETAFLIKMME 725 (726)
Q Consensus 706 ~~~~~~~~~~~~~fl~~~l~ 725 (726)
..........+++||.++|+
T Consensus 238 ~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 238 SSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTC
T ss_pred CcCHHHHHHHHHHHHHHhhC
Confidence 55556666778999999875
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.2e-24 Score=223.90 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=177.6
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
...++.+.++|++.||.+|+++++.|++. +++.|+||++||+.+.. .+......|+++||+|+.+|+||+|.++.
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~--~~~~P~Vv~~hG~~~~~---~~~~~~~~~a~~G~~v~~~D~rG~G~s~~ 124 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSGWL 124 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCSSS
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC--CCCccEEEEecCCCCCc---CcHHHHHHHHhCCCEEEEeeccccCCCCC
Confidence 45678899999999999999999999864 46799999999975543 23344567899999999999999998766
Q ss_pred cccccccccC---------------------CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCce
Q 004866 540 KWHHDGRRTK---------------------KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598 (726)
Q Consensus 540 ~~~~~~~~~~---------------------~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f 598 (726)
.......... ....+.|++++++++..+..+|++||+++|+|+||++++.++...| .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~~ 203 (322)
T d1vlqa_ 125 KGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KA 203 (322)
T ss_dssp CCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SC
T ss_pred CccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-Cc
Confidence 5432221111 0113679999999999999999999999999999999999888754 57
Q ss_pred eEEEEeCCcccccccccC--CCCCCCh-hhhcccCCCC-ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHH
Q 004866 599 RAVVLEVPFLDATNTLLY--PILPLIA-ADYEEFGYPG-DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEA 674 (726)
Q Consensus 599 ~a~v~~~p~~d~~~~~~~--~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~ 674 (726)
+++|+.+|.......+.. ...+... ..+. ...+. .....+.+..+||..++.+ ++.|+|++||..|.+||+.++
T Consensus 204 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~a~~-i~~P~Lv~~G~~D~~vp~~~~ 281 (322)
T d1vlqa_ 204 KALLCDVPFLCHFRRAVQLVDTHPYAEITNFL-KTHRDKEEIVFRTLSYFDGVNFAAR-AKIPALFSVGLMDNICPPSTV 281 (322)
T ss_dssp CEEEEESCCSCCHHHHHHHCCCTTHHHHHHHH-HHCTTCHHHHHHHHHTTCHHHHHTT-CCSCEEEEEETTCSSSCHHHH
T ss_pred cEEEEeCCccccHHHHHhhccccchhhHHhhh-hcCcchhhhHHHHhhhhhHHHHHhc-CCCCEEEEEeCCCCCcCHHHH
Confidence 899988887654432211 1111100 0010 11122 2334566777899998887 899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 675 AKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 675 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.++++++.. + ..+.+++++||.+... ......++||.+.|.
T Consensus 282 ~~~~~~~~~---~---~~l~~~p~~~H~~~~~----~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 282 FAAYNYYAG---P---KEIRIYPYNNHEGGGS----FQAVEQVKFLKKLFE 322 (322)
T ss_dssp HHHHHHCCS---S---EEEEEETTCCTTTTHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHCCC---C---eEEEEECCCCCCCccc----cCHHHHHHHHHHHhC
Confidence 888877642 2 2233389999965332 112235689998873
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.6e-23 Score=216.45 Aligned_cols=248 Identities=13% Similarity=0.097 Sum_probs=178.1
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
...++++.++|++.||.+|+++++.|++ .++.|+||++||+.+.. ..|......|+++||+|+.+|+||+|+++.
T Consensus 51 ~~~~~~~~v~~~~~dg~~i~~~l~~P~~---~~~~P~vv~~HG~~~~~--~~~~~~~~~la~~Gy~vi~~D~rG~G~s~~ 125 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASY--DGEIHEMVNWALHGYATFGMLVRGQQRSED 125 (318)
T ss_dssp CSSEEEEEEEEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCS--GGGHHHHHHHHHTTCEEEEECCTTTSSSCC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEecCC---CCCceEEEEecCCCCCc--cchHHHHHHHHHCCCEEEEEeeCCCCCCCC
Confidence 4567899999999999999999999986 36789999999986644 457778889999999999999999998876
Q ss_pred cccccccccCC--------------CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 540 KWHHDGRRTKK--------------LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 540 ~~~~~~~~~~~--------------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
.+......... ...+.|...+++++..++.+|+++|+++|+|+||.+++.++...++ ++++++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~~~ 204 (318)
T d1l7aa_ 126 TSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADY 204 (318)
T ss_dssp CCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEES
T ss_pred CcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEEec
Confidence 55432221111 1236788899999999999999999999999999999999998765 56667777
Q ss_pred CcccccccccC--CCCCCCh--hhhcccCCCC-ChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHH
Q 004866 606 PFLDATNTLLY--PILPLIA--ADYEEFGYPG-DIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVAR 680 (726)
Q Consensus 606 p~~d~~~~~~~--~~~~~~~--~~~~~~g~~~-~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~ 680 (726)
|.......... ...+... ......+... ..+.+.....+++...+++ ++.|+|++||..|..||+.++.+++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~Lii~G~~D~~vp~~~~~~~~~~ 283 (318)
T d1l7aa_ 205 PYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADR-VKVPVLMSIGLIDKVTPPSTVFAAYNH 283 (318)
T ss_dssp CCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGG-CCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred cccccHHHHhhcccccccchhhhhhhcccccccccccccccccccccccccc-CCCCEEEEEECCCCCcCHHHHHHHHHH
Confidence 76543322111 1111111 0111122221 1222334455667777776 899999999999999999999999988
Q ss_pred HHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 681 VRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 681 L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|... ..+.+++++||.... +....+++||.++|.
T Consensus 284 l~~~------~~l~~~~~~gH~~~~-----~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 284 LETK------KELKVYRYFGHEYIP-----AFQTEKLAFFKQILK 317 (318)
T ss_dssp CCSS------EEEEEETTCCSSCCH-----HHHHHHHHHHHHHHC
T ss_pred cCCC------cEEEEECCCCCCCcH-----HHHHHHHHHHHHhCC
Confidence 7431 123338999996432 233456899999984
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.90 E-value=2.8e-23 Score=218.38 Aligned_cols=240 Identities=15% Similarity=0.117 Sum_probs=168.9
Q ss_pred CceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 462 FYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 462 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
....|++.++. ||..|+++++.|++ .++.|+||++||..+.. ..+....+.|+++||+|+.+|+||+|++....
T Consensus 103 ~~~~e~v~ip~-dg~~l~g~l~~P~~---~~~~P~Vi~~hG~~~~~--e~~~~~~~~l~~~G~~vl~~D~~G~G~s~~~~ 176 (360)
T d2jbwa1 103 SPPAERHELVV-DGIPMPVYVRIPEG---PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPGQGEMFEYK 176 (360)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEECCSS---SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTTSGGGTTTC
T ss_pred CCCeEEeecCc-CCcccceEEEecCC---CCCceEEEEeCCCCccH--HHHHHHHHHHHhcCCEEEEEccccccccCccc
Confidence 34578888885 89999999988875 36789999999864432 34566778899999999999999998764321
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCC
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPL 621 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~ 621 (726)
. .......++.++++||.....+|++||+|+|+|+||++++.++...| +++|+|+.+|+.++...... .+.
T Consensus 177 ~------~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~--~~~ 247 (360)
T d2jbwa1 177 R------IAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLE--TPL 247 (360)
T ss_dssp C------SCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGS--CHH
T ss_pred c------ccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhh--hhh
Confidence 1 11223446677889999999999999999999999999999998877 57999999998886532211 111
Q ss_pred Chhhh-cccCCCCChhH-HHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCC
Q 004866 622 IAADY-EEFGYPGDIDD-FHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699 (726)
Q Consensus 622 ~~~~~-~~~g~~~~~~~-~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 699 (726)
....+ ...+.+...+. ......++....+.+ +++|+|++||+.|. ||+.++.++++++.... ..+++++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~~~-----~~l~~~~~g 320 (360)
T d2jbwa1 248 TKESWKYVSKVDTLEEARLHVHAALETRDVLSQ-IACPTYILHGVHDE-VPLSFVDTVLELVPAEH-----LNLVVEKDG 320 (360)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGG-CCSCEEEEEETTSS-SCTHHHHHHHHHSCGGG-----EEEEEETTC
T ss_pred hhHHHHHhccCCchHHHHHHHHhhcchhhhHhh-CCCCEEEEEeCCCC-cCHHHHHHHHHhcCCCC-----eEEEEECCC
Confidence 11111 11233222222 233445555566665 89999999999996 79999999999887543 223337899
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 700 DIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 700 gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
+|...... ......+.+||.++|.
T Consensus 321 ~H~~~~~~--~~~~~~i~dWl~~~L~ 344 (360)
T d2jbwa1 321 DHCCHNLG--IRPRLEMADWLYDVLV 344 (360)
T ss_dssp CGGGGGGT--THHHHHHHHHHHHHHT
T ss_pred CcCCCcCh--HHHHHHHHHHHHHHhc
Confidence 99644322 2233456789999884
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.83 E-value=1.1e-19 Score=192.18 Aligned_cols=149 Identities=20% Similarity=0.271 Sum_probs=121.6
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC--CC--CCCC-----CccchHHHHHHHHCCcEEEEEc
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG--AY--GELL-----DKRWRSELKSLLDRGWVVAFAD 530 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hG--g~--~~~~-----~~~~~~~~~~l~~~G~~v~~~d 530 (726)
...+..+.+.++.+||++|.+.|++|++ .+++|+||..|+ +. .... ...+....+.|+++||+|+.+|
T Consensus 19 ~~~~~~~~v~i~~rDG~~L~~~v~~P~~---~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 95 (381)
T d1mpxa2 19 SNDYIKREVMIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 95 (381)
T ss_dssp TCSEEEEEEEEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred ccCceEEEEEEECCCCCEEEEEEEEeCC---CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence 4567888999999999999999999986 368999998864 11 1111 1112234588999999999999
Q ss_pred cCCCCCCCCcccccccc-----cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 531 VRGGGGGGKKWHHDGRR-----TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 531 ~RG~g~~g~~~~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
.||.|+++..|...+.. ........|..++++|+.++..++.+||+++|+||||++++++|.+.|+.++|+|+.+
T Consensus 96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~ 175 (381)
T d1mpxa2 96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 175 (381)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence 99999998887643322 2345689999999999999988899999999999999999999999999999999999
Q ss_pred Cccccc
Q 004866 606 PFLDAT 611 (726)
Q Consensus 606 p~~d~~ 611 (726)
|+.|..
T Consensus 176 ~~~d~~ 181 (381)
T d1mpxa2 176 PMIDGW 181 (381)
T ss_dssp CCCCTT
T ss_pred cccccc
Confidence 999865
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.83 E-value=1.5e-19 Score=186.71 Aligned_cols=246 Identities=18% Similarity=0.100 Sum_probs=155.6
Q ss_pred CCCceEEEEEEECCCCc-EEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccchHHHHHHHH-CCcEEEEEccCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGI-SVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLD-RGWVVAFADVRGGGG 536 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~-~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~ 536 (726)
......+.+++++.||. .|++.+++|++. +++.|+|||+|||.. ......+......|+. .||+|+.+|||...+
T Consensus 45 ~~~v~~~~~~~~~~~g~~~i~~~~~~P~~~--~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~pe 122 (317)
T d1lzla_ 45 FDGVSLRELSAPGLDGDPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPE 122 (317)
T ss_dssp CTTEEEEEEEECCSTTCCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTT
T ss_pred CCCceEEEEEEecCCCCceEEEEEECCCCC--CCCCcEEEEecCcccccccccccchHHHhHHhhcCCcccccccccccc
Confidence 34667889999999996 699999999863 467899999999733 2233445566666765 599999999998765
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCccc
Q 004866 537 GGKKWHHDGRRTKKLNSIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLD 609 (726)
Q Consensus 537 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d 609 (726)
. .....++|+.+++.|+.++ --+|++||+|+|+|+||++++.++.+.++ .....+...+..+
T Consensus 123 ~-----------~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (317)
T d1lzla_ 123 T-----------TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELD 191 (317)
T ss_dssp S-----------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCC
T ss_pred c-----------cccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccccccccccccc
Confidence 3 2235689999999999765 23799999999999999999988865322 1233343333322
Q ss_pred cccc-c---cCCCCCC-Chh---h-----hcc-cCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHH
Q 004866 610 ATNT-L---LYPILPL-IAA---D-----YEE-FGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAA 675 (726)
Q Consensus 610 ~~~~-~---~~~~~~~-~~~---~-----~~~-~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~ 675 (726)
.... . .....+. ... . ... ...+.++.. ....+|..........|+++++|+.|. ...++.
T Consensus 192 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pp~li~~g~~D~--l~~~~~ 266 (317)
T d1lzla_ 192 DRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDV---SIYAAPSRATDLTGLPPTYLSTMELDP--LRDEGI 266 (317)
T ss_dssp TTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCC---CTTTCGGGCSCCTTCCCEEEEEETTCT--THHHHH
T ss_pred ccccccccccccccchhhhhhhHHHHhhhccccccCCCCchh---ccccCchhhhhccCCCCeEEEECCCCC--CHHHHH
Confidence 2110 0 0000000 000 0 000 000010000 001123222222124678888888883 567999
Q ss_pred HHHHHHHhcCCCCCCCcEEEEcCCCCCCCc---hhhHHHHHHHHHHHHHHhhcC
Q 004866 676 KWVARVRESTIYDPKRPILLNLTTDIVEEN---RYLQCKESALETAFLIKMMES 726 (726)
Q Consensus 676 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~~l~~ 726 (726)
+|+++|+++|++ ..++++++++|++.. .....+...+.++||.++|.|
T Consensus 267 ~~~~~L~~~G~~---v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lrs 317 (317)
T d1lzla_ 267 EYALRLLQAGVS---VELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRS 317 (317)
T ss_dssp HHHHHHHHTTCC---EEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCC---EEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhCC
Confidence 999999999964 222228999998643 233345566789999999986
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=9.2e-20 Score=179.71 Aligned_cols=229 Identities=14% Similarity=0.004 Sum_probs=149.7
Q ss_pred ceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 463 YSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 463 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
.++|++++ .| +++....|. ++.|+||++||..+.. ..|......|+++||+|+.+|+||+|++...+.
T Consensus 3 ~~~~~~~l---~g--~~~~~~~p~-----~~~~~vl~lHG~~~~~--~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~ 70 (238)
T d1ufoa_ 3 VRTERLTL---AG--LSVLARIPE-----APKALLLALHGLQGSK--EHILALLPGYAERGFLLLAFDAPRHGEREGPPP 70 (238)
T ss_dssp EEEEEEEE---TT--EEEEEEEES-----SCCEEEEEECCTTCCH--HHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCC
T ss_pred EEEEEEEE---CC--EEEEecCCC-----CCCeEEEEeCCCCCCH--HHHHHHHHHHHHCCCEEEEecCCCCCCCccccc
Confidence 35666665 45 444344443 4569999999976643 345666778999999999999999987644332
Q ss_pred ccccccCCCCc---HHHH-HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCC
Q 004866 543 HDGRRTKKLNS---IKDF-ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPI 618 (726)
Q Consensus 543 ~~~~~~~~~~~---~~D~-~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~ 618 (726)
........... ..+. .+....+...+.+++.+++++|+|+||++++.++.++|+.. ++++..+..+....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~-~~~~~~~~~~~~~~----- 144 (238)
T d1ufoa_ 71 SSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPR-GVLAFIGSGFPMKL----- 144 (238)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCCS-CEEEESCCSSCCCC-----
T ss_pred ccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcchh-heeeeeeecccccc-----
Confidence 21111110111 1122 22223333345678899999999999999999999888765 44444443332210
Q ss_pred CCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-Ec
Q 004866 619 LPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL-NL 697 (726)
Q Consensus 619 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~ 697 (726)
.+...+..+ ....+...++..+..+..+.|+|++||..|..||++++.+++++|++++.+. +...+ ++
T Consensus 145 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 213 (238)
T d1ufoa_ 145 --------PQGQVVEDP-GVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEG--RLARFVEE 213 (238)
T ss_dssp --------CTTCCCCCH-HHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTC--CEEEEEET
T ss_pred --------ccccccccc-cccchhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCc--eEEEEEEC
Confidence 111222222 3344567788877766678899999999999999999999999999998652 22333 89
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 698 TTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 698 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
++||.... +......+|+.++|.
T Consensus 214 g~gH~~~~-----~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 214 GAGHTLTP-----LMARVGLAFLEHWLE 236 (238)
T ss_dssp TCCSSCCH-----HHHHHHHHHHHHHHH
T ss_pred CCCCccCH-----HHHHHHHHHHHHHhc
Confidence 99997532 233445689988874
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.82 E-value=1.9e-19 Score=173.19 Aligned_cols=206 Identities=10% Similarity=0.074 Sum_probs=147.0
Q ss_pred eEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEc--CCCCCCCCcc-chHHHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 464 SCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGH--GAYGELLDKR-WRSELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 464 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~h--Gg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
+.+.+++...+| +|.+.+..|+... ..+.+++|++| ++++.+++.. .....+.|+++||.|+.+|+||.|.+...
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~~-~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~ 84 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 84 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCCC-CCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCc
Confidence 346688999999 7888888776532 23446666666 4455444433 34567889999999999999999987554
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCC
Q 004866 541 WHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP 620 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 620 (726)
+. ......+|+.++++|+.++. +.++++++|+||||.+++.++.+. ..+++|+.+|..+...+
T Consensus 85 ~~------~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~~------- 147 (218)
T d2fuka1 85 FD------HGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWDF------- 147 (218)
T ss_dssp CC------TTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBCC-------
T ss_pred cC------cCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchhh-------
Confidence 33 23456899999999998763 457999999999999999888763 25688888886542210
Q ss_pred CChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCC
Q 004866 621 LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTD 700 (726)
Q Consensus 621 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 700 (726)
++ . ....|+|+|||..|..||+.++.++++++.... .+.++++++
T Consensus 148 ------------------------~~----~-~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~~~~------~l~~i~ga~ 192 (218)
T d2fuka1 148 ------------------------SD----V-QPPAQWLVIQGDADEIVDPQAVYDWLETLEQQP------TLVRMPDTS 192 (218)
T ss_dssp ------------------------TT----C-CCCSSEEEEEETTCSSSCHHHHHHHHTTCSSCC------EEEEETTCC
T ss_pred ------------------------hc----c-ccccceeeEecCCCcCcCHHHHHHHHHHccCCc------eEEEeCCCC
Confidence 00 0 145799999999999999999999887665432 233379999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 701 IVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 701 H~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
|++..+...+ ...+-+|+.++|.
T Consensus 193 H~f~~~~~~l--~~~~~~~v~~~l~ 215 (218)
T d2fuka1 193 HFFHRKLIDL--RGALQHGVRRWLP 215 (218)
T ss_dssp TTCTTCHHHH--HHHHHHHHGGGCS
T ss_pred CCCCCCHHHH--HHHHHHHHHHhcC
Confidence 9887633332 3345689988873
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.82 E-value=2.1e-19 Score=188.12 Aligned_cols=240 Identities=14% Similarity=0.184 Sum_probs=166.4
Q ss_pred EEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCC--CCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 465 CEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGA--YGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 465 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg--~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
.+.+.++.+||++|.+.|++|++ +++.|+||+.||- ........+....+.|+++||+|+.+|+||.|+++..+.
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~---~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~~ 81 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFV 81 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC---SSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCCC
T ss_pred EeCeEEECCCCCEEEEEEEEcCC---CCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCccc
Confidence 45689999999999999999975 4689999999862 222122233445688999999999999999999977654
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC-CCCCC
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY-PILPL 621 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-~~~~~ 621 (726)
. ......|..++++|+.++.+.| +||+++|.||||++++++|...|..++|+|..++..|+...... ....+
T Consensus 82 ~------~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~~ 154 (347)
T d1ju3a2 82 P------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGAL 154 (347)
T ss_dssp T------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCC
T ss_pred c------ccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCcc
Confidence 3 3456689999999999999988 79999999999999999999889999999999999987531100 00000
Q ss_pred Chh----h-------------------------------------------------------hcccC-CCCChhHHHHH
Q 004866 622 IAA----D-------------------------------------------------------YEEFG-YPGDIDDFHAI 641 (726)
Q Consensus 622 ~~~----~-------------------------------------------------------~~~~g-~~~~~~~~~~~ 641 (726)
... + ...+. .|. .-+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~w 231 (347)
T d1ju3a2 155 SVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPD---NDESW 231 (347)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCS---CCHHH
T ss_pred chhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhccc---chhhh
Confidence 000 0 00000 010 11345
Q ss_pred HhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc------------hhhH
Q 004866 642 RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEEN------------RYLQ 709 (726)
Q Consensus 642 ~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~------------~~~~ 709 (726)
.+.+|+..+.+ ++.|+|+++|..|..++ .+.+.+.+++.... ..+++.+ .+|+... ....
T Consensus 232 ~~~~~~~~~~~-i~vP~L~i~G~~D~~~~--~~~~~~~~~~~~~~----~~liigp-w~H~~~~~~~~~~~~g~~~~~~~ 303 (347)
T d1ju3a2 232 QSISLFERLGG-LATPALITAGWYDGFVG--ESLRTFVAVKDNAD----ARLVVGP-WSHSNLTGRNADRKFGIAATYPI 303 (347)
T ss_dssp HTTCCHHHHTT-CCCCEEEEEEEECTTHH--HHHHHHHHHTTTSC----EEEEEEE-EESSCCSSEETTEECCGGGSCCH
T ss_pred hcCCHHHHhhc-CCCCEEEeccccCCCcc--hhHHHHHHhhccCC----ceEEEcC-ccccCcccccCCCCCCccccccH
Confidence 66788888776 89999999999996543 56788888876431 2222222 2443211 1113
Q ss_pred HHHHHHHHHHHHHhhc
Q 004866 710 CKESALETAFLIKMME 725 (726)
Q Consensus 710 ~~~~~~~~~fl~~~l~ 725 (726)
.+.....++||.++|.
T Consensus 304 ~~~~~~~l~wfD~~LK 319 (347)
T d1ju3a2 304 QEATTMHKAFFDRHLR 319 (347)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3445567899999983
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.81 E-value=6.4e-20 Score=180.35 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=146.5
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
|.|++++.||.++++++..|.+ +++|+||++|+++|.. .......+.|+++||+|+.||+.+.++.+..+....
T Consensus 4 e~v~~~~~dg~~~~a~~~~P~~----~~~P~vl~~h~~~G~~--~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~~~ 77 (233)
T d1dina_ 4 EGISIQSYDGHTFGALVGSPAK----APAPVIVIAQEIFGVN--AFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQD 77 (233)
T ss_dssp TTCCEECTTSCEECEEEECCSS----SSEEEEEEECCTTBSC--HHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTS
T ss_pred eEEEEEcCCCCEEEEEEECCCC----CCceEEEEeCCCCCCC--HHHHHHHHHHHhcCCcceeeeeccCCCcCcccChHH
Confidence 4577999999999999988864 5799999999887643 344556788999999999999988776655432211
Q ss_pred cc-----------cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc
Q 004866 546 RR-----------TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL 614 (726)
Q Consensus 546 ~~-----------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 614 (726)
.. ........|+.++++++.+.+. +.+||+++|+|+||.+++.++.. +. +.++++..|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~------ 148 (233)
T d1dina_ 78 ERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVG------ 148 (233)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSC------
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceeccccccc------
Confidence 11 0112356889999999988775 55899999999999999998875 44 45555433311
Q ss_pred cCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEE
Q 004866 615 LYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPIL 694 (726)
Q Consensus 615 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 694 (726)
. .++...+.+ ++.|+|++||+.|++||.++..++.+.++. +++ ..+.
T Consensus 149 ------------------~----------~~~~~~~~~-i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~~-~~~---~~~~ 195 (233)
T d1dina_ 149 ------------------L----------EKQLNKVPE-VKHPALFHMGGQDHFVPAPSRQLITEGFGA-NPL---LQVH 195 (233)
T ss_dssp ------------------G----------GGGGGGGGG-CCSCEEEEEETTCTTSCHHHHHHHHHHHTT-CTT---EEEE
T ss_pred ------------------c----------ccchhhhhc-cCCcceeeecccccCCCHHHHHHHHHHHhc-CCC---EEEE
Confidence 0 011222333 778999999999999999988888777754 422 1222
Q ss_pred EEcCCCCCCCc----hh---hHHHHHHHHHHHHHH
Q 004866 695 LNLTTDIVEEN----RY---LQCKESALETAFLIK 722 (726)
Q Consensus 695 ~~~~~gH~~~~----~~---~~~~~~~~~~~fl~~ 722 (726)
+|++++|++.. +. .....+.++++||.+
T Consensus 196 ~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 196 WYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 28999998753 11 123345677888864
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.81 E-value=1.9e-19 Score=184.08 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=146.3
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCC-Cccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG-KKWHHD 544 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g-~~~~~~ 544 (726)
....++..||..|++|.+.|++.. .++.|+||++||..+.. ..|...+.+|+++||.|+.+|+||++|.. ..+...
T Consensus 5 ~~h~~~~~dg~~l~~w~~~p~~~~-~~~~~~Vvi~HG~~~~~--~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~~~ 81 (302)
T d1thta_ 5 IAHVLRVNNGQELHVWETPPKENV-PFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEF 81 (302)
T ss_dssp EEEEEEETTTEEEEEEEECCCTTS-CCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBCC--------CC
T ss_pred eeeEEEcCCCCEEEEEEecCcCCC-CCCCCEEEEeCCCcchH--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCC
Confidence 345578899999999999988643 35679999999964432 46888899999999999999999984332 221111
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC---CCCC-
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY---PILP- 620 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~---~~~~- 620 (726)
.......|+.++++||.++ ++++|+|+|+||||.+++.++.. ..++++|+.+|+.++..+... ...+
T Consensus 82 ----~~~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~~ 152 (302)
T d1thta_ 82 ----TMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYLS 152 (302)
T ss_dssp ----CHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGGG
T ss_pred ----CHHHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccch
Confidence 1112467888899999876 35799999999999998887764 447899999999887543210 0000
Q ss_pred CChhhhcc---c-CCCCChhH-HHHHHhc------CcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCC
Q 004866 621 LIAADYEE---F-GYPGDIDD-FHAIRNY------SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDP 689 (726)
Q Consensus 621 ~~~~~~~~---~-g~~~~~~~-~~~~~~~------sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 689 (726)
.......+ + +....... ....... ++...+++ ++.|+|+++|..|..||+.++.++++.++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~PvLii~G~~D~~V~~~~~~~l~~~i~s~~---- 227 (302)
T d1thta_ 153 LPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVAN-TSVPLIAFTANNDDWVKQEEVYDMLAHIRTGH---- 227 (302)
T ss_dssp SCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTT-CCSCEEEEEETTCTTSCHHHHHHHHTTCTTCC----
T ss_pred hhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhh-cCCCEEEEEeCCCCccCHHHHHHHHHhCCCCC----
Confidence 00000000 0 00000001 0111111 23345665 89999999999999999999999999886533
Q ss_pred CCcEEEEcCCCCCCCc
Q 004866 690 KRPILLNLTTDIVEEN 705 (726)
Q Consensus 690 ~~~~~~~~~~gH~~~~ 705 (726)
..+.+++++||....
T Consensus 228 -~kl~~~~g~~H~l~e 242 (302)
T d1thta_ 228 -CKLYSLLGSSHDLGE 242 (302)
T ss_dssp -EEEEEETTCCSCTTS
T ss_pred -ceEEEecCCCccccc
Confidence 223338999997543
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.81 E-value=6.3e-19 Score=187.80 Aligned_cols=249 Identities=14% Similarity=0.026 Sum_probs=172.2
Q ss_pred CCCceEEEEEEECC-----CCc--EEEEEEEEcCCCCCCCCccEEEEEcC--C---------------------------
Q 004866 460 SEFYSCEQYDVPSH-----DGI--SVPLTIIYSPKYKKENQNPGLLHGHG--A--------------------------- 503 (726)
Q Consensus 460 ~~~~~~~~~~~~s~-----dG~--~i~~~l~~p~~~~~~~~~P~vl~~hG--g--------------------------- 503 (726)
.+....|.+++.+. ||+ +|.+.|++|++. +|.|+|+..+- .
T Consensus 18 ~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~---~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (405)
T d1lnsa3 18 SSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKST---EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIH 94 (405)
T ss_dssp GGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCS---SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECC
T ss_pred CCCceEeEEEEeCCCCCCCCCCEeEEEEEEEccCCC---CCceEEEEeCCcCCCCccccccccccccccccccccccccc
Confidence 34556788888765 999 699999999863 57999985532 1
Q ss_pred ----------------------CCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHH
Q 004866 504 ----------------------YGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCA 561 (726)
Q Consensus 504 ----------------------~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~ 561 (726)
+............++|+++||+|+.+|.||.|+++..|.. .+..+.+|..+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~-----~~~~e~~D~~~~I 169 (405)
T d1lnsa3 95 VEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTS-----GDYQQIYSMTAVI 169 (405)
T ss_dssp CCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCT-----TSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcccc-----CChhhhhhHHHHH
Confidence 0000011122456899999999999999999999887754 2335789999999
Q ss_pred HHHHHcCCC--------------CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhh--
Q 004866 562 RFLIEKEIV--------------KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAAD-- 625 (726)
Q Consensus 562 ~~l~~~~~~--------------d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~-- 625 (726)
+||.++... ...|||++|.||||++.+++|...|..++|+|..+++.|+...+...........
T Consensus 170 eWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~ 249 (405)
T d1lnsa3 170 DWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFP 249 (405)
T ss_dssp HHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCT
T ss_pred HHHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchh
Confidence 999864322 2368999999999999999999889999999999999998654322111100000
Q ss_pred ------------------------------------hcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCc
Q 004866 626 ------------------------------------YEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRF 669 (726)
Q Consensus 626 ------------------------------------~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V 669 (726)
..+..... ..-+.+.+.+|..++++ ++.|+|+++|-.|..|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~w~~~s~~~~~~~-I~vP~L~i~Gw~D~~v 326 (405)
T d1lnsa3 250 GEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSG--DYNQFWHDRNYLINTDK-VKADVLIVHGLQDWNV 326 (405)
T ss_dssp TCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTC--CCCHHHHTTBGGGGGGG-CCSEEEEEEETTCCSS
T ss_pred hhhhhhhhccccccccccchhhhchhhhhhccchhhhhhhhccc--cchhhhhhcChhhhhhc-CCCCEEEEEeccCCCC
Confidence 00000100 11245677899999987 9999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 670 GVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 670 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
++.++.+++++|+..+ + .-++ .-..+|+........+....+++||.++|
T Consensus 327 ~~~~~~~~y~al~~~~-~---~~Li-lgpw~H~~~~~~~~~d~~~~~~~wFD~~L 376 (405)
T d1lnsa3 327 TPEQAYNFWKALPEGH-A---KHAF-LHRGAHIYMNSWQSIDFSETINAYFVAKL 376 (405)
T ss_dssp CTHHHHHHHHHSCTTC-C---EEEE-EESCSSCCCTTBSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-C---cEEE-EeCCCCCCCcccccchHHHHHHHHHHHHh
Confidence 9999999999997532 1 2222 23468965332222233345678999988
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.81 E-value=2.2e-19 Score=179.46 Aligned_cols=204 Identities=15% Similarity=0.083 Sum_probs=144.4
Q ss_pred ceEEEEEEECCCC-cEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 463 YSCEQYDVPSHDG-ISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 463 ~~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
+....+++....+ ....++|++|++. .+++.|+||++||+.+.. ..+......|+++||+|+.+|++|.++...
T Consensus 21 ~~~~~~~~~~~~~~g~~~~~ly~P~~~-~~g~~P~Vv~~HG~~g~~--~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~-- 95 (260)
T d1jfra_ 21 YATSQTSVSSLVASGFGGGTIYYPTST-ADGTFGAVVISPGFTAYQ--SSIAWLGPRLASQGFVVFTIDTNTTLDQPD-- 95 (260)
T ss_dssp SCEEEEEECTTTCSSSCCEEEEEESCC-TTCCEEEEEEECCTTCCG--GGTTTHHHHHHTTTCEEEEECCSSTTCCHH--
T ss_pred cceeEEEeccCCcCcccCEEEEEcCCC-CCCCccEEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEeeCCCcCCch--
Confidence 4444455543222 1234678999863 457899999999976543 456677889999999999999998765321
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHc----CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCC
Q 004866 542 HHDGRRTKKLNSIKDFISCARFLIEK----EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYP 617 (726)
Q Consensus 542 ~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~ 617 (726)
....|+.+++++|.+. +.+|++||+++|+|+||.+++.++...+ +++|+|+.+|.....
T Consensus 96 ----------~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~~------ 158 (260)
T d1jfra_ 96 ----------SRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTDK------ 158 (260)
T ss_dssp ----------HHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSCC------
T ss_pred ----------hhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeecccccc------
Confidence 2357888899999885 5689999999999999999999998755 678888877743210
Q ss_pred CCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE-E
Q 004866 618 ILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL-N 696 (726)
Q Consensus 618 ~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~ 696 (726)
...+ ++.|+|+++|+.|..||+.+..+++.+...++.+ ..++ +
T Consensus 159 -------------------------------~~~~-~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~----~~~~~i 202 (260)
T d1jfra_ 159 -------------------------------TWPE-LRTPTLVVGADGDTVAPVATHSKPFYESLPGSLD----KAYLEL 202 (260)
T ss_dssp -------------------------------CCTT-CCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSC----EEEEEE
T ss_pred -------------------------------cccc-cccceeEEecCCCCCCCHHHHHHHHHHhcccCCC----EEEEEE
Confidence 1122 6789999999999999998755555544444422 1233 7
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 697 LTTDIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 697 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
++++|++.... .......+++||.++|.
T Consensus 203 ~ga~H~~~~~~-~~~~~~~~~~wl~~~L~ 230 (260)
T d1jfra_ 203 RGASHFTPNTS-DTTIAKYSISWLKRFID 230 (260)
T ss_dssp TTCCTTGGGSC-CHHHHHHHHHHHHHHHS
T ss_pred CCCccCCCCCC-hHHHHHHHHHHHHHHhc
Confidence 99999865422 22233456899999985
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.81 E-value=8.7e-20 Score=181.86 Aligned_cols=196 Identities=16% Similarity=0.109 Sum_probs=144.4
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
.+.|-..+..++. |++|++ .+.|+||++|||+... ....|....+.|+++||+|+.+|||..++.
T Consensus 41 dv~Yg~~~~~~lD--iy~P~~----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~-------- 106 (261)
T d2pbla1 41 NLSYGEGDRHKFD--LFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEV-------- 106 (261)
T ss_dssp EEESSSSTTCEEE--EECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTS--------
T ss_pred CcCCCCCcCeEEE--EeccCC----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccc--------
Confidence 4555444455554 666754 3579999999987543 334566778999999999999999987653
Q ss_pred cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCC------CceeEEEEeCCcccccccccCCCC
Q 004866 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCP------DLFRAVVLEVPFLDATNTLLYPIL 619 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~p~~d~~~~~~~~~~ 619 (726)
.....++|+.++++|+.++. ++||+|+|+|+||+|+++++.... ..++++++.+|+.++......
T Consensus 107 ---~~p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 177 (261)
T d2pbla1 107 ---RISEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT--- 177 (261)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS---
T ss_pred ---cCchhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhh---
Confidence 12357899999999999864 589999999999999988876532 357899999998886532110
Q ss_pred CCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCC
Q 004866 620 PLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTT 699 (726)
Q Consensus 620 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 699 (726)
.. ...++. ..+.+.+.||+.++.+ ...|++++||+.|+.|+..|+.+|+++|+.. .+. .+++
T Consensus 178 --~~--~~~~~~-----~~~~~~~~SP~~~~~~-~~~P~li~~G~~D~~~~~~qs~~~~~~l~~~-------~~~-~~~~ 239 (261)
T d2pbla1 178 --SM--NEKFKM-----DADAAIAESPVEMQNR-YDAKVTVWVGGAERPAFLDQAIWLVEAWDAD-------HVI-AFEK 239 (261)
T ss_dssp --TT--HHHHCC-----CHHHHHHTCGGGCCCC-CSCEEEEEEETTSCHHHHHHHHHHHHHHTCE-------EEE-ETTC
T ss_pred --hh--cccccC-----CHHHHHHhCchhhccc-CCCeEEEEEecCCCchHHHHHHHHHHHhCCC-------ceE-eCCC
Confidence 00 011121 1244678899999987 7899999999999999999999999999643 223 6899
Q ss_pred CCCC
Q 004866 700 DIVE 703 (726)
Q Consensus 700 gH~~ 703 (726)
+|+.
T Consensus 240 ~HF~ 243 (261)
T d2pbla1 240 HHFN 243 (261)
T ss_dssp CTTT
T ss_pred Cchh
Confidence 9963
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.80 E-value=3.8e-19 Score=186.40 Aligned_cols=250 Identities=16% Similarity=0.133 Sum_probs=157.7
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC---CCCccchHHHHHHHHCCcEEEEEccCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE---LLDKRWRSELKSLLDRGWVVAFADVRGGGG 536 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~---~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~ 536 (726)
...+..+..++++.||..|++.++.|++. +++.|+|||+|||... .....+....+.|+++|++|+.+|||..++
T Consensus 74 ~~~v~~~~~~i~~~dg~~i~~~iy~P~~~--~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~ 151 (358)
T d1jkma_ 74 RDDVETSTETILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWT 151 (358)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEE
T ss_pred CCCccEEEEEEeCCCCCEEEEEEEecCCC--CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccccc
Confidence 45678889999999999999999999863 4678999999998332 112234566788999999999999998753
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHHcC-CCCCCcEEEEEecccHHHHHHHHHc-----CCCceeEEEEeCCcccc
Q 004866 537 GGKKWHHDGRRTKKLNSIKDFISCARFLIEKE-IVKEHKLAGWGYSAGGLLVAAAINC-----CPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 537 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~p~~d~ 610 (726)
.. .....+..++|+.++++|+.++. ..|++||+|+|.|+||+|++.++.. .+..+.+.++.+|+++.
T Consensus 152 ~~-------pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~ 224 (358)
T d1jkma_ 152 AE-------GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISG 224 (358)
T ss_dssp TT-------EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCC
T ss_pred cc-------ccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceecc
Confidence 21 12234568999999999998763 3588999999999999999877643 23467889999998875
Q ss_pred cccccCC-CCCCChhhhcccCCCCChhHHHH-HHhc--------Cccccc------ccCCCCCeEEEEecCCCCcChHHH
Q 004866 611 TNTLLYP-ILPLIAADYEEFGYPGDIDDFHA-IRNY--------SPYDNI------QKDVLYPAVLVTSSFNTRFGVWEA 674 (726)
Q Consensus 611 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~-~~~~--------sp~~~i------~~~~~~P~lli~g~~D~~V~~~~~ 674 (726)
....... ............+.......... +..+ +|+.+. ....-.|+++++|+.|.. ..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l--~~e~ 302 (358)
T d1jkma_ 225 GYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPL--RDEG 302 (358)
T ss_dssp CTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTT--HHHH
T ss_pred ccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCC--HHHH
Confidence 4211000 00000000000011111111111 1111 122111 000123677888888843 4689
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEcCCCCCCCc-----hhhHHHH-HHHHHHHHHHh
Q 004866 675 AKWVARVRESTIYDPKRPILLNLTTDIVEEN-----RYLQCKE-SALETAFLIKM 723 (726)
Q Consensus 675 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-----~~~~~~~-~~~~~~fl~~~ 723 (726)
.+|+++|+++|++ ..+.++++++|++.. .....+. ...+..|+..+
T Consensus 303 ~~~~~~L~~aGv~---v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 303 IAFARRLARAGVD---VAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHHTTCC---EEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCc---EEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999964 122228999997522 1233333 34556787654
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=2.8e-18 Score=176.23 Aligned_cols=236 Identities=16% Similarity=0.075 Sum_probs=154.6
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccchHHHHHHHH-CCcEEEEEccCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLD-RGWVVAFADVRGGGGG 537 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~ 537 (726)
.....++.+++++.+| .|++.++.|++ +.|+|||+|||.. ......+....+.+++ .|++|+.+|||.+.+.
T Consensus 51 ~~~~~~~~~~i~~~~g-~i~~~iy~P~~-----~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~ 124 (311)
T d1jjia_ 51 ERVERVEDRTIKGRNG-DIRVRVYQQKP-----DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH 124 (311)
T ss_dssp SCCSEEEEEEEEETTE-EEEEEEEESSS-----SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTS
T ss_pred CCcceEEEEEEeCCCC-cEEEEEEcCCC-----CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccc
Confidence 3456788899999888 79999998863 4599999999733 2233445556666655 5999999999987654
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHc----CCCceeEEEEeCCcccc
Q 004866 538 GKKWHHDGRRTKKLNSIKDFISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINC----CPDLFRAVVLEVPFLDA 610 (726)
Q Consensus 538 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~----~p~~f~a~v~~~p~~d~ 610 (726)
..+..++|+.++++|+.++ ..+|++||+|+|.|+||++++.++.. ......+.++.+|.+|.
T Consensus 125 -----------~~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~ 193 (311)
T d1jjia_ 125 -----------KFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNF 193 (311)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCS
T ss_pred -----------ccchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeee
Confidence 2345789999999999876 35799999999999999998877643 23467888999999886
Q ss_pred ccccc-----CCCCCCChhhh----cccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHH
Q 004866 611 TNTLL-----YPILPLIAADY----EEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARV 681 (726)
Q Consensus 611 ~~~~~-----~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L 681 (726)
..... ........... .....+.... ..-...||+....+ ...|+++++|+.|.. ..++.+|+++|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sp~~~~~~-~~pP~li~~g~~D~l--~d~~~~~~~~L 268 (311)
T d1jjia_ 194 VAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREED--KFNPLASVIFADLE-NLPPALIITAEYDPL--RDEGEVFGQML 268 (311)
T ss_dssp SSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGG--GGCTTTSGGGSCCT-TCCCEEEEEEEECTT--HHHHHHHHHHH
T ss_pred ccCcccccccccccccccHHHhhhhhhhccccccc--ccccccchhhcccc-cCCCEEEEEcCCCCC--hHHHHHHHHHH
Confidence 53110 00000000000 0000000000 00012377766554 456788899999954 45899999999
Q ss_pred HhcCCCCCCCcEEEEcCCCCCCCch----hhHHHHHHHHHHHH
Q 004866 682 RESTIYDPKRPILLNLTTDIVEENR----YLQCKESALETAFL 720 (726)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl 720 (726)
+++|++ ..++.+++++|++... ....+...++.+||
T Consensus 269 ~~~Gv~---v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 269 RRAGVE---ASIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp HHTTCC---EEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHCCCC---EEEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 999964 1222289999986431 22233344556666
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.78 E-value=3.1e-18 Score=181.34 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=121.1
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcC--C--CCCCC------CccchHHHHHHHHCCcEEEEE
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHG--A--YGELL------DKRWRSELKSLLDRGWVVAFA 529 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hG--g--~~~~~------~~~~~~~~~~l~~~G~~v~~~ 529 (726)
...+..+.|.++.+||++|.+.|+.|++ .++.|+||..|+ . ..... ...+......|+++||+|+.+
T Consensus 23 ~~~~~~~~v~ipmrDG~~L~~~v~~P~~---~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~ 99 (385)
T d2b9va2 23 QRDYIKREVMVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 99 (385)
T ss_dssp CCSEEEEEEEEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred CCCCeEeEEEEECCCCCEEEEEEEEcCC---CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEE
Confidence 4568888999999999999999999985 468999997653 1 11100 111223457899999999999
Q ss_pred ccCCCCCCCCcccccccc-----cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEe
Q 004866 530 DVRGGGGGGKKWHHDGRR-----TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLE 604 (726)
Q Consensus 530 d~RG~g~~g~~~~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 604 (726)
|+||.|+++..|...... .....+.+|..++++||.++...+.+||+++|+||||++++++|.+.|+.++|+|..
T Consensus 100 d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~ 179 (385)
T d2b9va2 100 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPE 179 (385)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEe
Confidence 999999999888754332 345568999999999999998778899999999999999999999999999999999
Q ss_pred CCccccc
Q 004866 605 VPFLDAT 611 (726)
Q Consensus 605 ~p~~d~~ 611 (726)
++..|+.
T Consensus 180 ~~~~d~~ 186 (385)
T d2b9va2 180 SPMVDGW 186 (385)
T ss_dssp EECCCTT
T ss_pred ccccccc
Confidence 9888764
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.77 E-value=5.3e-18 Score=174.05 Aligned_cols=238 Identities=16% Similarity=0.056 Sum_probs=152.7
Q ss_pred CCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccchHHHHHHHHCC-cEEEEEccCCCCCCC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWRSELKSLLDRG-WVVAFADVRGGGGGG 538 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~G-~~v~~~d~RG~g~~g 538 (726)
....++.+++.. +|.+|++.+++|++. +++.|+||++|||.. ......+......++.+| +.|+.+|||...+.
T Consensus 42 ~~~~~~~~~~~~-~g~~i~~~~y~P~~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~- 117 (308)
T d1u4na_ 42 PVAEVREFDMDL-PGRTLKVRMYRPEGV--EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH- 117 (308)
T ss_dssp CCSEEEEEEEEE-TTEEEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS-
T ss_pred CCCcEEEEEEec-CCceEEEEEEecccc--CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc-
Confidence 345677777776 788999999999864 357999999999732 223345666777777765 56888999976643
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHHcC---CCCCCcEEEEEecccHHHHHHHHHcCCC----ceeEEEEeCCccccc
Q 004866 539 KKWHHDGRRTKKLNSIKDFISCARFLIEKE---IVKEHKLAGWGYSAGGLLVAAAINCCPD----LFRAVVLEVPFLDAT 611 (726)
Q Consensus 539 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~ 611 (726)
......+|+.++++|+.++. .+|++||+|+|+|+||+++++++....+ ...+..+..|..+..
T Consensus 118 ----------~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (308)
T d1u4na_ 118 ----------KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYD 187 (308)
T ss_dssp ----------CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCC
T ss_pred ----------ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccc
Confidence 33457899999999999764 5799999999999999999988765432 345555666655433
Q ss_pred ccccCCCCCCChhhhcccCCC--CChh-HHHHH------------HhcCcccccccCCCCCeEEEEecCCCCcChHHHHH
Q 004866 612 NTLLYPILPLIAADYEEFGYP--GDID-DFHAI------------RNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAK 676 (726)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~g~~--~~~~-~~~~~------------~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~ 676 (726)
... +. ....+.... .... ..... ...|+..........|++|++|+.|..+ .++.+
T Consensus 188 ~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~ 258 (308)
T d1u4na_ 188 PAH-----PP--ASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKL 258 (308)
T ss_dssp TTS-----CC--HHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHH
T ss_pred ccc-----cc--chhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHH
Confidence 211 00 000000000 0000 00000 1123333322212236778888888544 58999
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCCCCCCCc----hhhHHHHHHHHHHHHHHhh
Q 004866 677 WVARVRESTIYDPKRPILLNLTTDIVEEN----RYLQCKESALETAFLIKMM 724 (726)
Q Consensus 677 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l 724 (726)
|+++|+++|++ ..++.+++++|++.. .....+...++.+||.+.|
T Consensus 259 ~~~~L~~~G~~---v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 259 YAEALNKAGVK---VEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHTTCC---EEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCC---EEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999964 122228999998643 1234455667788998876
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.8e-17 Score=166.14 Aligned_cols=210 Identities=12% Similarity=0.014 Sum_probs=142.0
Q ss_pred CCCceEEEEEEECCCCc-EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCC
Q 004866 460 SEFYSCEQYDVPSHDGI-SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGG 538 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~-~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g 538 (726)
...++.+.+.+.+.||. ++.++|+.|++..+++++|+|+++||++...... .....+....+|++|+.+++|+...++
T Consensus 8 ~~~~~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~-~~~~~~~~~~~~~~vV~v~~~~~~~~~ 86 (265)
T d2gzsa1 8 SVFYHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLD-DELLKQLSEKTPPVIVAVGYQTNLPFD 86 (265)
T ss_dssp CSSEEEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCC-HHHHHHHTTSCCCEEEEEEESSSSSCC
T ss_pred CCcceeEEEEEEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHH-HHHHHHHHhcCCCeEEEecCCCCCcCc
Confidence 45678999999999985 7999999999988889999999999964322111 112234445589999999999987655
Q ss_pred Cccccc--------cccc-------C---CCCcHHHHH--HHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCce
Q 004866 539 KKWHHD--------GRRT-------K---KLNSIKDFI--SCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLF 598 (726)
Q Consensus 539 ~~~~~~--------~~~~-------~---~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f 598 (726)
...+.. .... . +...+.++. ..+.++.++..+|+++++|+|+|+||++++.++.+ ++.|
T Consensus 87 ~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f 165 (265)
T d2gzsa1 87 LNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYF 165 (265)
T ss_dssp HHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSC
T ss_pred ccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-Cccc
Confidence 332100 0000 0 011222322 24555666666899999999999999999998885 6788
Q ss_pred eEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecC--------CCCcC
Q 004866 599 RAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSF--------NTRFG 670 (726)
Q Consensus 599 ~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~--------D~~V~ 670 (726)
.++++.+|...+.. ...+...+++..... ...|+++.+|.. |.+++
T Consensus 166 ~~~~a~s~~~~~~~-------------------------~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~d~~~~ 219 (265)
T d2gzsa1 166 RSYYSASPSLGRGY-------------------------DALLSRVTAVEPLQF-CTKHLAIMEGSATQGDNRETHAVGV 219 (265)
T ss_dssp SEEEEESGGGSTTH-------------------------HHHHHHHHTSCTTTT-TTCEEEEEECCC-----------CH
T ss_pred CEEEEECCcccccc-------------------------hhhhhcccccccccc-CCCcEEEEcCCcccccccccccchh
Confidence 88888888654321 112233344444443 456677777765 67889
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCC
Q 004866 671 VWEAAKWVARVRESTIYDPKRPILL--NLTTDIV 702 (726)
Q Consensus 671 ~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~ 702 (726)
+.++.+++++|+++|++ +.+ +++++|+
T Consensus 220 ~~~~~~l~~~L~~~g~~-----~~~~~~pG~~Hg 248 (265)
T d2gzsa1 220 LSKIHTTLTILKDKGVN-----AVFWDFPNLGHG 248 (265)
T ss_dssp HHHHHHHHHHHHHTTCC-----EEEEECTTCCHH
T ss_pred HHHHHHHHHHHHHCCCC-----EEEEEcCCCCcc
Confidence 99999999999999964 333 8999995
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.70 E-value=1.2e-15 Score=147.58 Aligned_cols=206 Identities=10% Similarity=0.055 Sum_probs=147.8
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCC--CCCCCCcc-chHHHHHHHHCCcEEEEEccCCCCCCCCccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGA--YGELLDKR-WRSELKSLLDRGWVVAFADVRGGGGGGKKWHHD 544 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg--~~~~~~~~-~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 544 (726)
|++.+.+| +|++++ .|.. ....|++|++||. ++..+... .......|.++||.|+.+|+||.|.+...
T Consensus 3 v~i~g~~G-~Le~~~-~~~~---~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~---- 73 (218)
T d2i3da1 3 VIFNGPAG-RLEGRY-QPSK---EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE---- 73 (218)
T ss_dssp EEEEETTE-EEEEEE-ECCS---STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC----
T ss_pred EEEeCCCc-cEEEEE-eCCC---CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCccc----
Confidence 67899999 899975 4432 2346899999984 34444333 34466789999999999999999987444
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChh
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAA 624 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~ 624 (726)
...+....+|..++++|+..+...+ .++.+.|+|+||.+++.++.+.+. ..++++..|......
T Consensus 74 --~~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~~~-~~~~~~~~~~~~~~~------------ 137 (218)
T d2i3da1 74 --FDHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD------------ 137 (218)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC------------
T ss_pred --cccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhhcc-ccceeeccccccccc------------
Confidence 3445568899999999999876544 578999999999999999987655 455666655433210
Q ss_pred hhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC
Q 004866 625 DYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE 704 (726)
Q Consensus 625 ~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 704 (726)
...+.. ...|.++++|..|..|+..+..+++++++..+-. ...+.+.++++|++.
T Consensus 138 ----------------------~~~~~~-~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~--~~~~~vi~gAdHfF~ 192 (218)
T d2i3da1 138 ----------------------FSFLAP-CPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGI--LITHRTLPGANHFFN 192 (218)
T ss_dssp ----------------------CTTCTT-CCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTC--CEEEEEETTCCTTCT
T ss_pred ----------------------hhhccc-cCCCceeeecccceecChHHHHHHHHHHhhccCC--CccEEEeCCCCCCCc
Confidence 001121 4679999999999999999999999999875411 112223799999986
Q ss_pred chhhHHHHHHHHHHHHHHhhc
Q 004866 705 NRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 705 ~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.+...+ ...+.+||.++|.
T Consensus 193 g~~~~l--~~~v~~~l~~~l~ 211 (218)
T d2i3da1 193 GKVDEL--MGECEDYLDRRLN 211 (218)
T ss_dssp TCHHHH--HHHHHHHHHHHHT
T ss_pred CCHHHH--HHHHHHHHHHhcC
Confidence 533332 3446899999984
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=3.9e-17 Score=165.74 Aligned_cols=247 Identities=13% Similarity=-0.006 Sum_probs=156.5
Q ss_pred eEEEEEEEC-CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 464 SCEQYDVPS-HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 464 ~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
.++.++++| ..|.++++.|+.| .+++|+|+++||+.+......|.. ..+.+.+.|++|++++..+.+.++.
T Consensus 8 ~v~~~~~~s~~~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 82 (288)
T d1sfra_ 8 PVEYLQVPSPSMGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD 82 (288)
T ss_dssp CCEEEEEEETTTTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCB
T ss_pred EEEEEEEECCCCCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCCCcc
Confidence 455666765 4788888876544 357999999999655433333432 2456667899999999988776554
Q ss_pred cccccc-cccCCCCcHHHH--HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccC
Q 004866 540 KWHHDG-RRTKKLNSIKDF--ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLY 616 (726)
Q Consensus 540 ~~~~~~-~~~~~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~ 616 (726)
.+.... ........++++ .+.+.++.++-.+|++|++|+|+||||++++.++.++|++|+++++.+|.++.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~~~~ 162 (288)
T d1sfra_ 83 WYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGP 162 (288)
T ss_dssp CSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHH
T ss_pred ccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccccccc
Confidence 433221 111122334443 45677888887789999999999999999999999999999999999999876532110
Q ss_pred CCCC------CChhhhcccCCCCChhHHHHHHhcCcccccccC--CCCCeEEEEecCCCCcC--------------hHHH
Q 004866 617 PILP------LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD--VLYPAVLVTSSFNTRFG--------------VWEA 674 (726)
Q Consensus 617 ~~~~------~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~--~~~P~lli~g~~D~~V~--------------~~~~ 674 (726)
.... ........+|.+.. ..+.+++|+.++.+. .+.+.++.+|..|..++ ..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~ 238 (288)
T d1sfra_ 163 TLIGLAMGDAGGYKASDMWGPKED----PAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSN 238 (288)
T ss_dssp HHHHHHHHHTTSCCHHHHHCSTTS----THHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccHhhhcCCcch----hhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHH
Confidence 0000 00000111233332 245678888876531 13344445555565555 3678
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEcCC-CCCCCchhhHHHHHHHHHHHHHHhhc
Q 004866 675 AKWVARVRESTIYDPKRPILLNLTT-DIVEENRYLQCKESALETAFLIKMME 725 (726)
Q Consensus 675 ~~~~~~L~~~~~~~~~~~~~~~~~~-gH~~~~~~~~~~~~~~~~~fl~~~l~ 725 (726)
.++.++|+++|++ ...+.++++ +|.... --....+.+.||.+.||
T Consensus 239 ~~l~~~l~~~g~~---~~~~~~~~~G~H~w~~---w~~~l~~~l~~l~~alg 284 (288)
T d1sfra_ 239 IKFQDAYNAGGGH---NGVFDFPDSGTHSWEY---WGAQLNAMKPDLQRALG 284 (288)
T ss_dssp HHHHHHHHHTTCC---SEEEECCSCCCSSHHH---HHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHCCCC---eEEEEECCCCccChhH---HHHHHHHHHHHHHHhcC
Confidence 8999999999864 222225654 696322 11234456899999987
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=4e-17 Score=163.12 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=122.7
Q ss_pred CCccEEEEEcCCCCC---CCCccchHHH----HHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHH
Q 004866 492 NQNPGLLHGHGAYGE---LLDKRWRSEL----KSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFL 564 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~---~~~~~~~~~~----~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l 564 (726)
++.|+||++|||... .....|.... ..++++||.|+.+|||.+++. ..+..++|+.++++|+
T Consensus 29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~-----------~~~~~~~d~~~~~~~l 97 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNITRL 97 (263)
T ss_dssp TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch-----------hhhHHHHhhhhhhhcc
Confidence 457999999997422 1223444433 344578999999999987763 1235789999999999
Q ss_pred HHcCCCCCCcEEEEEecccHHHHHHHHHcCCC-----------------ceeEEEEeCCcccccccccCCCCCCChhhh-
Q 004866 565 IEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-----------------LFRAVVLEVPFLDATNTLLYPILPLIAADY- 626 (726)
Q Consensus 565 ~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-----------------~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~- 626 (726)
.++. ++++|+|+|+|+||.+++.++...++ ..++.+...++.++...... .+......
T Consensus 98 ~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 173 (263)
T d1vkha_ 98 VKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIE--YPEYDCFTR 173 (263)
T ss_dssp HHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHH--CGGGHHHHH
T ss_pred cccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhh--ccccchhhh
Confidence 9863 67899999999999999988875443 34566666666665432211 11100000
Q ss_pred cccCC-CCCh-hHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCC
Q 004866 627 EEFGY-PGDI-DDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 703 (726)
Q Consensus 627 ~~~g~-~~~~-~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 703 (726)
..++. +... ...... .......+.+ ...|+|++||..|+.||+.++.+|+++|++.+++ ..+.++++++|..
T Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~---~~~~~~~~~~H~~ 247 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRV-MPYVKKALSR-FSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLS---FKLYLDDLGLHND 247 (263)
T ss_dssp HHCTTCGGGCCCCHHHH-HHHHHHHHHH-HTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCC---EEEEEECCCSGGG
T ss_pred ccccccccccccccccc-Cccccccccc-cCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCC---EEEEEECCCCchh
Confidence 01111 1100 000000 0011122333 5789999999999999999999999999999854 1222278899964
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.68 E-value=9.2e-16 Score=146.59 Aligned_cols=184 Identities=11% Similarity=0.049 Sum_probs=126.8
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc-cC----CCCcHHHHHHHHHHHHH
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR-TK----KLNSIKDFISCARFLIE 566 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~-~~----~~~~~~D~~~~~~~l~~ 566 (726)
++.|+||++||..+. ...|......++ .++.|+.|+....+..+..|...... .. .....+++...+.++.+
T Consensus 12 ~~~P~vi~lHG~g~~--~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 88 (202)
T d2h1ia1 12 TSKPVLLLLHGTGGN--ELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAAK 88 (202)
T ss_dssp TTSCEEEEECCTTCC--TTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 567999999995432 244666666555 57888888755333322222211111 00 11234556777777787
Q ss_pred cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCc
Q 004866 567 KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 646 (726)
Q Consensus 567 ~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 646 (726)
+..+|++||+++|+|+||.+++.++.++|++++++++.+|.+....
T Consensus 89 ~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~---------------------------------- 134 (202)
T d2h1ia1 89 EYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG---------------------------------- 134 (202)
T ss_dssp HTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS----------------------------------
T ss_pred hccccccceeeecccccchHHHHHHHhccccccceeeecCCCCccc----------------------------------
Confidence 8889999999999999999999999999999999998888643110
Q ss_pred ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHhh
Q 004866 647 YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKMM 724 (726)
Q Consensus 647 ~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 724 (726)
..... ....|.+++||..|++||+.++.+++++|+++++ ++.+ ++ +||.... +....+.+||.+.+
T Consensus 135 ~~~~~-~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~-----~~~~~~~~-ggH~~~~-----~~~~~~~~wl~k~f 202 (202)
T d2h1ia1 135 MQLAN-LAGKSVFIAAGTNDPICSSAESEELKVLLENANA-----NVTMHWEN-RGHQLTM-----GEVEKAKEWYDKAF 202 (202)
T ss_dssp CCCCC-CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTC-----EEEEEEES-STTSCCH-----HHHHHHHHHHHHHC
T ss_pred ccccc-cccchhhcccccCCCccCHHHHHHHHHHHHHCCC-----CEEEEEEC-CCCcCCH-----HHHHHHHHHHHHhC
Confidence 00011 1456788899999999999999999999999884 3444 65 5896532 33556789998863
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.67 E-value=4.5e-17 Score=161.15 Aligned_cols=222 Identities=13% Similarity=-0.052 Sum_probs=137.4
Q ss_pred CceEEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCc----EEEEEccCCCCC
Q 004866 462 FYSCEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGW----VVAFADVRGGGG 536 (726)
Q Consensus 462 ~~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~----~v~~~d~RG~g~ 536 (726)
...++.+++.|. .|.+++++|+.|++.. ++++|+||++||+...... ........|+++|. +++.++......
T Consensus 12 ~~~~~~~~~~S~~lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~-~~~~~l~~l~~~~~~~~~i~v~~~~~~~~~ 89 (246)
T d3c8da2 12 EIPAKEIIWKSERLKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDAIDTTH 89 (246)
T ss_dssp SSCCEEEEEEETTTTEEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECCCSHHH
T ss_pred CCCcEEEEEECCCCCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccC-cHHHHHHHHHHhCCCCceEEeecccccccc
Confidence 445677777774 5889999999999875 4679999999996532222 23345567777664 333333221111
Q ss_pred CCCcccccccccCCCCcHHHH-HHHHHHHHHc---CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccc
Q 004866 537 GGKKWHHDGRRTKKLNSIKDF-ISCARFLIEK---EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATN 612 (726)
Q Consensus 537 ~g~~~~~~~~~~~~~~~~~D~-~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 612 (726)
+.. .......+.++ .+.+..+++. ..+|+++++|+|+||||++++.++.++|++|+++++.+|..++..
T Consensus 90 ----~~~---~~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~ 162 (246)
T d3c8da2 90 ----RAH---ELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPH 162 (246)
T ss_dssp ----HHH---HSSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTC
T ss_pred ----ccc---ccCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCccccccc
Confidence 110 00111123333 2222222222 346899999999999999999999999999999999999876542
Q ss_pred cccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCc
Q 004866 613 TLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRP 692 (726)
Q Consensus 613 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 692 (726)
. +.... ..+...++...... ...|.++.+|..|+++ ..++++|+++|+++|+ +
T Consensus 163 ~----------------~~~~~----~~~~~~~~~~~~~~-~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~-----~ 215 (246)
T d3c8da2 163 R----------------GGQQE----GVLLEKLKAGEVSA-EGLRIVLEAGIREPMI-MRANQALYAQLHPIKE-----S 215 (246)
T ss_dssp T----------------TSSSC----CHHHHHHHTTSSCC-CSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTT-----S
T ss_pred C----------------Cccch----HHHHHHhhhhhhhc-cCCCeEEEecCCCcch-hHHHHHHHHHHHHCCC-----C
Confidence 1 11111 11222344555554 5677888888888766 5789999999999985 3
Q ss_pred EEE--EcCCCCCCCchhhHHH-HHHHHHHHHHHhh
Q 004866 693 ILL--NLTTDIVEENRYLQCK-ESALETAFLIKMM 724 (726)
Q Consensus 693 ~~~--~~~~gH~~~~~~~~~~-~~~~~~~fl~~~l 724 (726)
+.+ +++ ||.. ..++ ...+.+.||.+.|
T Consensus 216 ~~~~~~~G-gH~~----~~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 216 IFWRQVDG-GHDA----LCWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp EEEEEESC-CSCH----HHHHHHHHHHHHHHHGGG
T ss_pred EEEEEeCC-CCCh----HHHHHHHHHHHHHHHHhh
Confidence 444 555 8963 3333 4456688887765
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.2e-15 Score=148.94 Aligned_cols=193 Identities=10% Similarity=0.058 Sum_probs=124.6
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCC------CCCCCCcccccccccC-CCCcH---HHHHHHH
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRG------GGGGGKKWHHDGRRTK-KLNSI---KDFISCA 561 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG------~g~~g~~~~~~~~~~~-~~~~~---~D~~~~~ 561 (726)
+..++||++||.-+. ...|......|...|+.+++|+.+. .+..+..|+....... ..... ++....+
T Consensus 19 ~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~l 96 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENI 96 (229)
T ss_dssp CCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHHH
Confidence 345789999984332 2335455555667799999987542 1223345554322111 11222 3333333
Q ss_pred HHHHH---cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHH
Q 004866 562 RFLIE---KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDF 638 (726)
Q Consensus 562 ~~l~~---~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 638 (726)
..+++ +..+|++||+|+|+|+||.+++.++.++|+.|+++|+.++.+...... ..
T Consensus 97 ~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~---------------~~------- 154 (229)
T d1fj2a_ 97 KALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF---------------PQ------- 154 (229)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS---------------CS-------
T ss_pred HHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCccccccccccccccc---------------cc-------
Confidence 33332 134799999999999999999999999999999999888754221100 00
Q ss_pred HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHH
Q 004866 639 HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALE 716 (726)
Q Consensus 639 ~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~ 716 (726)
++..... .+.|++++||..|+.||+.++++.++.|++.... ..+.+ +++.||.... ++..+.
T Consensus 155 ------~~~~~~~--~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~---~~v~~~~~~g~gH~i~~-----~~~~~~ 218 (229)
T d1fj2a_ 155 ------GPIGGAN--RDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNP---ANVTFKTYEGMMHSSCQ-----QEMMDV 218 (229)
T ss_dssp ------SCCCSTT--TTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCG---GGEEEEEETTCCSSCCH-----HHHHHH
T ss_pred ------ccccccc--ccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCccCH-----HHHHHH
Confidence 1111111 3679999999999999999999999999986422 23444 7899996432 345667
Q ss_pred HHHHHHhh
Q 004866 717 TAFLIKMM 724 (726)
Q Consensus 717 ~~fl~~~l 724 (726)
.+||.++|
T Consensus 219 ~~wL~~~L 226 (229)
T d1fj2a_ 219 KQFIDKLL 226 (229)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhHC
Confidence 89999987
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.66 E-value=2.5e-15 Score=149.92 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=86.7
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
++++||.+|++... + ..|.||++||..+.. ..|...+..|+++||.|+.+|.||+|.+... .
T Consensus 3 ~~t~dG~~l~y~~~---G-----~g~~ivlvHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~--------~ 64 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDW---G-----QGRPVVFIHGWPLNG--DAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV--------W 64 (274)
T ss_dssp EECTTSCEEEEEEE---C-----SSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------S
T ss_pred EECcCCCEEEEEEE---C-----CCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEeCCCCcccccc--------c
Confidence 67899998875332 2 235688899976543 5678888889999999999999999976432 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHH-cCCCceeEEEEeCCcc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAIN-CCPDLFRAVVLEVPFL 608 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~p~~ 608 (726)
...++.++...+..++++- ..+++.++|||+||.+++..+. ..|++++++++.++..
T Consensus 65 ~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~ 122 (274)
T d1a8qa_ 65 DGYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIP 122 (274)
T ss_dssp SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred ccccchhhHHHHHHHHHHh--hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccC
Confidence 2245666665555555432 3478999999999998887554 4589999998887654
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.66 E-value=1.2e-15 Score=151.52 Aligned_cols=202 Identities=14% Similarity=0.015 Sum_probs=125.8
Q ss_pred CceEEEEEEEC-CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc----cchH-HHHHHHHCC----cEEEEEcc
Q 004866 462 FYSCEQYDVPS-HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK----RWRS-ELKSLLDRG----WVVAFADV 531 (726)
Q Consensus 462 ~~~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~----~~~~-~~~~l~~~G----~~v~~~d~ 531 (726)
....+.+++.| .+|.+++++|++|+++.+++++|+|+++||+.+..... .... ....+...+ +.+...+.
T Consensus 19 ~g~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (255)
T d1jjfa_ 19 RGQVVNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNT 98 (255)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECC
T ss_pred ceEEEEEEEEecCCCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccc
Confidence 56788888876 57999999999999988889999999999976543211 1111 222333333 33443332
Q ss_pred CCCCCCCCcccccccccCCCCcH-HHHHHHHHHHHH--cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 532 RGGGGGGKKWHHDGRRTKKLNSI-KDFISCARFLIE--KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 532 RG~g~~g~~~~~~~~~~~~~~~~-~D~~~~~~~l~~--~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
......... ...... ..+.+.+.++.+ ...+|++||++.|+|+||++++.++.++|++|+++++.+|..
T Consensus 99 ~~~~~~~~~--------~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~ 170 (255)
T d1jjfa_ 99 NAAGPGIAD--------GYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP 170 (255)
T ss_dssp CCCCTTCSC--------HHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCT
T ss_pred ccccccccc--------cccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCc
Confidence 222111000 000111 122223344433 245789999999999999999999999999999999998876
Q ss_pred cccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCC
Q 004866 609 DATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYD 688 (726)
Q Consensus 609 d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~ 688 (726)
+..... ..+.. +...... ...|.+|.||..|..++ ...+++++|+++|++.
T Consensus 171 ~~~~~~------------~~~~~--------------~~~~~~~-~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~ 221 (255)
T d1jjfa_ 171 NTYPNE------------RLFPD--------------GGKAARE-KLKLLFIACGTNDSLIG--FGQRVHEYCVANNINH 221 (255)
T ss_dssp TSCCHH------------HHCTT--------------TTHHHHH-HCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCC
T ss_pred CCcccc------------ccccc--------------HHHHhhc-cCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCE
Confidence 532100 00001 1111111 34567788888888766 4679999999999641
Q ss_pred CCCcEEEEcCCCCCC
Q 004866 689 PKRPILLNLTTDIVE 703 (726)
Q Consensus 689 ~~~~~~~~~~~gH~~ 703 (726)
....++++||..
T Consensus 222 ---~~~~~~~ggH~~ 233 (255)
T d1jjfa_ 222 ---VYWLIQGGGHDF 233 (255)
T ss_dssp ---EEEEETTCCSSH
T ss_pred ---EEEEECCCCcCH
Confidence 122278999964
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.65 E-value=1.3e-15 Score=159.77 Aligned_cols=139 Identities=21% Similarity=0.235 Sum_probs=97.8
Q ss_pred CCceEEEEEEECCCCcEEEEEEEE-c-CCCCCCCCccEEEEEcCCCCCCCCccc------hHHHHHHHHCCcEEEEEccC
Q 004866 461 EFYSCEQYDVPSHDGISVPLTIIY-S-PKYKKENQNPGLLHGHGAYGELLDKRW------RSELKSLLDRGWVVAFADVR 532 (726)
Q Consensus 461 ~~~~~~~~~~~s~dG~~i~~~l~~-p-~~~~~~~~~P~vl~~hGg~~~~~~~~~------~~~~~~l~~~G~~v~~~d~R 532 (726)
..|..|...+++.||..|..+-+. + .+....++.|+||++||.+++. ..| ...+..|+++||.|+++|.|
T Consensus 23 ~~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~--~~~~~~~~~~sla~~L~~~Gy~V~~~D~r 100 (377)
T d1k8qa_ 23 WGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSR 100 (377)
T ss_dssp TTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCT
T ss_pred cCCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccch--hHHhhcCccchHHHHHHHCCCEEEEEcCC
Confidence 357788899999999988776442 2 2233456779999999976654 233 23578899999999999999
Q ss_pred CCCCCCCcccc-cccccCC-----CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEE
Q 004866 533 GGGGGGKKWHH-DGRRTKK-----LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVL 603 (726)
Q Consensus 533 G~g~~g~~~~~-~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 603 (726)
|+|.+...-.. ....... .....|+.++++++.++ ...+++.++||||||.+++.++.++|+..+.+++
T Consensus 101 G~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~--~g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~ 175 (377)
T d1k8qa_ 101 GNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKT 175 (377)
T ss_dssp TSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEE
T ss_pred CCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHH--cCCCCEEEEEecchHHHHHHHHHhhhhhhhhcee
Confidence 99976432100 0001111 12356888899998765 2337899999999999999999999987655443
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.63 E-value=8.8e-16 Score=149.10 Aligned_cols=214 Identities=16% Similarity=0.078 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.+.||++||..++. ..|...+..|+++||.|+++|+||+|.+...... ........|....+.++... +.+
T Consensus 11 ~~~vvliHG~~~~~--~~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGNS--ADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVH----TGPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCCT--HHHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTT----CCHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEeCCCCccccccccc----cchhHHHHHHHHHHhhhhhc---ccC
Confidence 35678899976643 5678888999999999999999999865322111 01111233444444444433 457
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCC----------CCh----hhhcccCCCCChhHH-
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILP----------LIA----ADYEEFGYPGDIDDF- 638 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~----------~~~----~~~~~~g~~~~~~~~- 638 (726)
++.++|+|+||.+++.++.++|.....+++................. ... .....+.........
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKA 161 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhhc
Confidence 99999999999999999999988754444322222111100000000 000 000000111000000
Q ss_pred HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHH
Q 004866 639 HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETA 718 (726)
Q Consensus 639 ~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 718 (726)
...........+.. +..|+|+++|+.|..||+..+.++++.++... ..+.+++++||......+.......+.+
T Consensus 162 ~~~~~~~~~~~~~~-~~~p~lii~g~~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 235 (242)
T d1tqha_ 162 LQELIADVRDHLDL-IYAPTFVVQARHDEMINPDSANIIYNEIESPV-----KQIKWYEQSGHVITLDQEKDQLHEDIYA 235 (242)
T ss_dssp HHHHHHHHHHTGGG-CCSCEEEEEETTCSSSCTTHHHHHHHHCCCSS-----EEEEEETTCCSSGGGSTTHHHHHHHHHH
T ss_pred ccccccccccccce-eccccceeecccCCccCHHHHHHHHHHcCCCC-----cEEEEECCCCCcCccccCHHHHHHHHHH
Confidence 01111122334454 78899999999999999999999998875432 1233389999974322223334456678
Q ss_pred HHHH
Q 004866 719 FLIK 722 (726)
Q Consensus 719 fl~~ 722 (726)
||.+
T Consensus 236 Fl~~ 239 (242)
T d1tqha_ 236 FLES 239 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=9e-16 Score=147.27 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=118.0
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH--HHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS--ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
.+|.+|.+....|.. +...|.||++||..+.. ..|.. .+..|+++||.|+++|+||+|.+...-. .....
T Consensus 13 v~G~~i~y~~~~~~~---~~~~~~vvllHG~~~~~--~~w~~~~~~~~la~~gy~via~D~~G~G~S~~~~~---~~~~~ 84 (208)
T d1imja_ 13 VQGQALFFREALPGS---GQARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAA---PAPIG 84 (208)
T ss_dssp ETTEEECEEEEECSS---SCCSCEEEECCCTTCCH--HHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSCC---SSCTT
T ss_pred ECCEEEEEEEecCCC---CCCCCeEEEECCCCCCh--hHHhhhHHHHHHHHcCCeEEEeecccccCCCCCCc---ccccc
Confidence 489898876666643 23467889999976543 33443 3578999999999999999986532210 11111
Q ss_pred C-CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhccc
Q 004866 551 L-NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEF 629 (726)
Q Consensus 551 ~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~ 629 (726)
. ...+++.+.++.+ +.+++.|+|+||||.+++.++.++|++++++|+.+|+..- ++
T Consensus 85 ~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~-----------------~~ 141 (208)
T d1imja_ 85 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD-----------------KI 141 (208)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG-----------------GS
T ss_pred hhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccc-----------------cc
Confidence 1 1223333333333 3368899999999999999999999999999988874210 00
Q ss_pred CCCCChhHHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhH
Q 004866 630 GYPGDIDDFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQ 709 (726)
Q Consensus 630 g~~~~~~~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 709 (726)
..+. ..+ ++.|+|+|+|+.|..+|.. .+ .++.. + ...+...+++||.. ...+-
T Consensus 142 ----~~~~------------~~~-i~~P~Lii~G~~D~~~~~~--~~---~~~~~--~--~~~~~~i~~~gH~~-~~~~p 194 (208)
T d1imja_ 142 ----NAAN------------YAS-VKTPALIVYGDQDPMGQTS--FE---HLKQL--P--NHRVLIMKGAGHPC-YLDKP 194 (208)
T ss_dssp ----CHHH------------HHT-CCSCEEEEEETTCHHHHHH--HH---HHTTS--S--SEEEEEETTCCTTH-HHHCH
T ss_pred ----cccc------------ccc-cccccccccCCcCcCCcHH--HH---HHHhC--C--CCeEEEECCCCCch-hhhCH
Confidence 0011 222 7889999999999877643 22 23221 1 11222279999952 11111
Q ss_pred HHHHHHHHHHHH
Q 004866 710 CKESALETAFLI 721 (726)
Q Consensus 710 ~~~~~~~~~fl~ 721 (726)
.+......+||.
T Consensus 195 ~~~~~~l~~Fl~ 206 (208)
T d1imja_ 195 EEWHTGLLDFLQ 206 (208)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 222334567775
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.60 E-value=4.1e-15 Score=142.85 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=121.4
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC-----CCCcHHHHHHHHHHHHH
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK-----KLNSIKDFISCARFLIE 566 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~-----~~~~~~D~~~~~~~l~~ 566 (726)
++.|+||++||..+. ...|......|+. ++.++.++.+.....+..|........ .....+++.+.++.+.+
T Consensus 21 ~~~p~vv~lHG~g~~--~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 97 (209)
T d3b5ea1 21 ESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAK 97 (209)
T ss_dssp SCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCC--HHHHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 457999999986543 2456666666654 788888876543333333322111110 01234556667778877
Q ss_pred cCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCc
Q 004866 567 KEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 646 (726)
Q Consensus 567 ~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 646 (726)
+..+|++||+|+|+|+||++++.++.++|++|+++|+.+|..... + .+
T Consensus 98 ~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~--------------------~------------~~ 145 (209)
T d3b5ea1 98 RHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD--------------------H------------VP 145 (209)
T ss_dssp HHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS--------------------S------------CC
T ss_pred HhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc--------------------c------------cc
Confidence 777899999999999999999999999999999999988854211 0 00
Q ss_pred ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 647 YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 647 ~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
. ....+.|.+++||..|+.|+ ..+.+++++|++.|. .+.+ +++ ||+... .+.+...+||.
T Consensus 146 ~---~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~-----~v~~~~~~g-gH~i~~-----~~~~~~~~wl~ 207 (209)
T d3b5ea1 146 A---TDLAGIRTLIIAGAADETYG-PFVPALVTLLSRHGA-----EVDARIIPS-GHDIGD-----PDAAIVRQWLA 207 (209)
T ss_dssp C---CCCTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTC-----EEEEEEESC-CSCCCH-----HHHHHHHHHHH
T ss_pred c---cccccchheeeeccCCCccC-HHHHHHHHHHHHCCC-----CeEEEEECC-CCCCCH-----HHHHHHHHHhC
Confidence 1 11246789999999998887 567889999999884 3333 655 897642 23344567874
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.1e-14 Score=149.00 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=93.5
Q ss_pred EEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 467 QYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 467 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
.-.+...||.+|++.-. +..|+||++||.++.. ..|...+..|+++||.|+++|.||+|.+...
T Consensus 13 ~~~v~~~~g~~i~y~~~--------G~gp~vlllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~------ 76 (322)
T d1zd3a2 13 HGYVTVKPRVRLHFVEL--------GSGPAVCLCHGFPESW--YSWRYQIPALAQAGYRVLAMDMKGYGESSAP------ 76 (322)
T ss_dssp EEEEEEETTEEEEEEEE--------CCSSEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEEECTTSTTSCCC------
T ss_pred eeEEEECCCCEEEEEEE--------cCCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEeccccccccccc------
Confidence 33456679998886432 2348899999976643 4678888999999999999999999865321
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
.......++++...+..++++ .+.+++.++|||+||.+++.++.++|++++++|+.++
T Consensus 77 ~~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 77 PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 111224677887777777765 3457899999999999999999999999999998764
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.60 E-value=7.8e-16 Score=154.61 Aligned_cols=125 Identities=20% Similarity=0.208 Sum_probs=89.6
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
|..-||.+|.+...-. + ...|+||++||+++.. ..|......++++||.|+++|.||+|.+... ..
T Consensus 6 ~~~~~g~~i~y~~~g~----~-~~~~~iv~lHG~~g~~--~~~~~~~~~~~~~~~~vi~~D~~G~G~S~~~-------~~ 71 (290)
T d1mtza_ 6 YAKVNGIYIYYKLCKA----P-EEKAKLMTMHGGPGMS--HDYLLSLRDMTKEGITVLFYDQFGCGRSEEP-------DQ 71 (290)
T ss_dssp EEEETTEEEEEEEECC----S-SCSEEEEEECCTTTCC--SGGGGGGGGGGGGTEEEEEECCTTSTTSCCC-------CG
T ss_pred eEEECCEEEEEEEcCC----C-CCCCeEEEECCCCCch--HHHHHHHHHHHHCCCEEEEEeCCCCcccccc-------cc
Confidence 3345998887544321 1 2358899999987754 3455556678889999999999999975321 11
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
...+++++.+.+..++++- ...+++.++|||+||.+++.++.++|++++++|+.+|+..
T Consensus 72 ~~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 130 (290)
T d1mtza_ 72 SKFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 130 (290)
T ss_dssp GGCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred ccccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccC
Confidence 2235666666666555431 1236899999999999999999999999999999888654
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.60 E-value=8.6e-14 Score=140.52 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=89.3
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW-RSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
.+|.+|++..+ + +...|.||++||..... ..| ......|+++||.|+++|.||+|.+...... ...
T Consensus 7 ~g~~~i~y~~~---G---~~~~p~vvl~HG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~-----~~~ 73 (297)
T d1q0ra_ 7 SGDVELWSDDF---G---DPADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTRDFA-----AHP 73 (297)
T ss_dssp ETTEEEEEEEE---S---CTTSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCTT-----TSC
T ss_pred ECCEEEEEEEe---c---CCCCCEEEEECCCCcCh--hHHHHHHHHHHHhCCCEEEEEeCCCCccccccccc-----ccc
Confidence 46677775443 2 12358899999985543 344 3456788999999999999999987433211 122
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.++..
T Consensus 74 ~~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~ 128 (297)
T d1q0ra_ 74 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 128 (297)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEcccc
Confidence 4688887777777654 344689999999999999999999999999999887754
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=3.1e-14 Score=141.16 Aligned_cols=226 Identities=17% Similarity=0.121 Sum_probs=137.4
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
+|.+.||.+|++... +..|.||++||.++.. ..|...+..|+++||.|+++|.||+|.+...
T Consensus 2 ~f~~~dG~~l~y~~~--------G~g~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-------- 63 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW--------GSGKPVLFSHGWLLDA--DMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP-------- 63 (271)
T ss_dssp EEECTTSCEEEEEEE--------SSSSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTSCCC--------
T ss_pred EEEeECCeEEEEEEE--------cCCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccc--------
Confidence 477889999875322 2235678899976643 4578888899999999999999999976322
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHH-HHHHcCCCceeEEEEeCCcccccccccC--CCCCCC---
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVA-AAINCCPDLFRAVVLEVPFLDATNTLLY--PILPLI--- 622 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~-~~~~~~p~~f~a~v~~~p~~d~~~~~~~--~~~~~~--- 622 (726)
....+++++...+..+.++ .+.+++.++|+|+||.+++ .++.++|++++++++..+.......... ......
T Consensus 64 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (271)
T d1va4a_ 64 WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFA 141 (271)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHHH
T ss_pred ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHHH
Confidence 2234677777777666654 3457899999999887665 4566789999999988776543221100 000000
Q ss_pred ----------hh---hh--cccC----CCCChh-------------------HHHHHHhcCcccccccCCCCCeEEEEec
Q 004866 623 ----------AA---DY--EEFG----YPGDID-------------------DFHAIRNYSPYDNIQKDVLYPAVLVTSS 664 (726)
Q Consensus 623 ----------~~---~~--~~~g----~~~~~~-------------------~~~~~~~~sp~~~i~~~~~~P~lli~g~ 664 (726)
.. .+ ..++ ...... ....+...+....+.+ ++.|+++++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~Pvl~i~g~ 220 (271)
T d1va4a_ 142 RFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAK-IDVPTLVIHGD 220 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHH-CCSCEEEEEET
T ss_pred HHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhh-cccceeecccC
Confidence 00 00 0000 000000 0011111222233444 78999999999
Q ss_pred CCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 665 FNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 665 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
.|..+|+..+.++++++... ..+.+++++||...- ++..+....+.+||.+
T Consensus 221 ~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~gH~~~~-e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 221 GDQIVPFETTGKVAAELIKG------AELKVYKDAPHGFAV-THAQQLNEDLLAFLKR 271 (271)
T ss_dssp TCSSSCGGGTHHHHHHHSTT------CEEEEETTCCTTHHH-HTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCC------CEEEEECCCCCchHH-hCHHHHHHHHHHHHCc
Confidence 99999999888887766431 123337999996322 2222333445788753
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=5.8e-14 Score=139.57 Aligned_cols=225 Identities=16% Similarity=0.139 Sum_probs=135.5
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
+|++.||.+|.+... +..|.||++||.++.. ..|...+..|+++||.|+++|.||+|.+...
T Consensus 2 ~f~~~dG~~i~y~~~--------G~g~pvvllHG~~~~~--~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~-------- 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW--------GSGQPIVFSHGWPLNA--DSWESQMIFLAAQGYRVIAHDRRGHGRSSQP-------- 63 (273)
T ss_dssp EEECTTSCEEEEEEE--------SCSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEEeeCCcEEEEEEE--------CCCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEechhcCccccc--------
Confidence 578899999876432 2235677899986643 4588888999999999999999999976422
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHH-HHHHcCCCceeEEEEeCCcccccccccCC--CCCCC---
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVA-AAINCCPDLFRAVVLEVPFLDATNTLLYP--ILPLI--- 622 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~-~~~~~~p~~f~a~v~~~p~~d~~~~~~~~--~~~~~--- 622 (726)
....++.++.+.+..+++. .+.++..++|+|+||.+++ .++..+|++++++++..+........... .....
T Consensus 64 ~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T d1a8sa_ 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhhh
Confidence 1224677777777666654 2446788999999876554 45666799999988877654322110000 00000
Q ss_pred ----------hhhh------ccc--CCC---CChhHH-------------------HHHHhcCcccccccCCCCCeEEEE
Q 004866 623 ----------AADY------EEF--GYP---GDIDDF-------------------HAIRNYSPYDNIQKDVLYPAVLVT 662 (726)
Q Consensus 623 ----------~~~~------~~~--g~~---~~~~~~-------------------~~~~~~sp~~~i~~~~~~P~lli~ 662 (726)
.... ..+ ..+ ...... ..+...+....+.+ ++.|+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Pvlii~ 220 (273)
T d1a8sa_ 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKK-IDVPTLVVH 220 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHT-CCSCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHh-hccceEEEe
Confidence 0000 000 001 111111 11122233344454 889999999
Q ss_pred ecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHH
Q 004866 663 SSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLI 721 (726)
Q Consensus 663 g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 721 (726)
|+.|..||...+.++.+++.... + +.+++++||...- ++..+....+.+||.
T Consensus 221 g~~D~~~~~~~~~~~~~~~~~~~-----~-~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 221 GDADQVVPIEASGIASAALVKGS-----T-LKIYSGAPHGLTD-THKDQLNADLLAFIK 272 (273)
T ss_dssp ETTCSSSCSTTTHHHHHHHSTTC-----E-EEEETTCCSCHHH-HTHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCCCC-----E-EEEECCCCCchHH-hCHHHHHHHHHHHcC
Confidence 99999999888877776663321 2 2236899996322 222233344577874
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=7.3e-15 Score=138.14 Aligned_cols=162 Identities=10% Similarity=-0.046 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcE
Q 004866 496 GLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKL 575 (726)
Q Consensus 496 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 575 (726)
.||++||..+......|....+.|+++||.|+++|++|+|.. ..+|++..++.+.+ ....++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~~---------------~~~~~~~~l~~~~~---~~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQH---TLHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTGG---GCCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCcc---------------hHHHHHHHHHHHHh---ccCCCc
Confidence 588899865543333356677899999999999999987742 46676666655553 355899
Q ss_pred EEEEecccHHHHHHHHHcCCCce--eEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccccC
Q 004866 576 AGWGYSAGGLLVAAAINCCPDLF--RAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKD 653 (726)
Q Consensus 576 ~i~G~S~GG~l~~~~~~~~p~~f--~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~ 653 (726)
.++|+||||++++.++.++|+.. .++++.+|+..... ...........+..... . .+
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~---------~~- 123 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLP--------TLQMLDEFTQGSFDHQK---I---------IE- 123 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCT--------TCGGGGGGTCSCCCHHH---H---------HH-
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccch--------hhhhhhhhhcccccccc---c---------cc-
Confidence 99999999999999999988754 34444444433221 00000011111221111 1 11
Q ss_pred CCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC
Q 004866 654 VLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE 704 (726)
Q Consensus 654 ~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 704 (726)
...|++++||..|..||++++.++++++. . +.+ .++++||+..
T Consensus 124 ~~~p~lvi~g~~D~~vp~~~~~~l~~~~~---~----~~~-~~~~~gH~~~ 166 (186)
T d1uxoa_ 124 SAKHRAVIASKDDQIVPFSFSKDLAQQID---A----ALY-EVQHGGHFLE 166 (186)
T ss_dssp HEEEEEEEEETTCSSSCHHHHHHHHHHTT---C----EEE-EETTCTTSCG
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHHcC---C----EEE-EeCCCCCcCc
Confidence 35689999999999999999999998873 1 223 3799999653
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.58 E-value=4.7e-14 Score=140.45 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=89.3
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
++++.||.+|++..+-|+ ..|+||++||.++.. ..|...+..|+++||.|+++|.||+|.+...
T Consensus 2 ~i~~~dG~~l~y~~~G~~------~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~-------- 65 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPR------DGLPVVFHHGWPLSA--DDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP-------- 65 (275)
T ss_dssp EEECTTSCEEEEEEESCT------TSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEEecCCCEEEEEEecCC------CCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccc--------
Confidence 478899999987655332 236788999976643 5688888899999999999999999875421
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecc-cHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSA-GGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~-GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
....+++++.+.+..+++. .+.+++.++|+|+ ||.++..++.++|++++.+|+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~ 124 (275)
T d1a88a_ 66 STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVP 124 (275)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCC
T ss_pred ccccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccc
Confidence 1224566666666666654 2446788888887 55666667888999999999887653
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.56 E-value=8.7e-14 Score=142.22 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=91.7
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
+.-++...||.+|.+..+=. + +.|.||++||+++... .|... ..++..||.|+++|.||+|.+..
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~----~--~g~pvvllHG~~g~~~--~~~~~-~~~l~~~~~Vi~~D~rG~G~S~~------ 76 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGN----P--HGKPVVMLHGGPGGGC--NDKMR-RFHDPAKYRIVLFDQRGSGRSTP------ 76 (313)
T ss_dssp EEEEEECSSSCEEEEEEEEC----T--TSEEEEEECSTTTTCC--CGGGG-GGSCTTTEEEEEECCTTSTTSBS------
T ss_pred CCCEEEeCCCcEEEEEEecC----C--CCCEEEEECCCCCCcc--chHHH-hHHhhcCCEEEEEeccccCCCCc------
Confidence 55567788999887654421 1 2356788999887543 23322 33346799999999999997632
Q ss_pred cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.......+++++.+.+..++++ ...+++.|+|||+||.+++.++.++|++++++++.+++.
T Consensus 77 ~~~~~~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 77 HADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cccccchhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 1122335678888888878765 234789999999999999999999999999999887754
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=5.7e-14 Score=141.24 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=138.1
Q ss_pred eEEEEEEEC-CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCCCC
Q 004866 464 SCEQYDVPS-HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 464 ~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
.++.++++| .-|..|++.+ +. ++.|+|++.||..+......|.. ..+.+.++|++|++|+-..+ .+..
T Consensus 5 ~v~~~~~~s~~~~r~i~~~~--~~-----~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~-~~~~ 76 (280)
T d1dqza_ 5 PVEYLQVPSASMGRDIKVQF--QG-----GGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQS-SFYT 76 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEE--EC-----CSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTT-CTTS
T ss_pred EEEEEEEecccCCCcceEEe--eC-----CCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCC-CcCc
Confidence 466677765 4578888765 22 45799999999665433334543 33667779999999995333 3444
Q ss_pred ccccccccc--CCCCcHHHH--HHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc
Q 004866 540 KWHHDGRRT--KKLNSIKDF--ISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL 615 (726)
Q Consensus 540 ~~~~~~~~~--~~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 615 (726)
.|+...... .+...++++ .+.+.++.++..+|++|++|+|+||||++++.++.++|++|+++++.+|.++......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~~ 156 (280)
T d1dqza_ 77 DWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWW 156 (280)
T ss_dssp BCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTH
T ss_pred cccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccCcc
Confidence 555443322 223345554 2456666666668999999999999999999999999999999999999987542110
Q ss_pred CCCCC------CChhhhcccCCCCChhHHHHHHhcCcccccccCC-CCCeEEEEec-CCCCcC--------------hHH
Q 004866 616 YPILP------LIAADYEEFGYPGDIDDFHAIRNYSPYDNIQKDV-LYPAVLVTSS-FNTRFG--------------VWE 673 (726)
Q Consensus 616 ~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~~-~~P~lli~g~-~D~~V~--------------~~~ 673 (726)
..... .......-+|.+.+ ..+.+++|+.++++.. +.+.+++.++ .|...+ ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~ 232 (280)
T d1dqza_ 157 PTLIGLAMNDSGGYNANSMWGPSSD----PAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRT 232 (280)
T ss_dssp HHHHHHHHHHTTSCCHHHHHCSTTS----HHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhccCCCHhhccCCcch----hhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHH
Confidence 00000 00000111343332 2356788887776421 1234555444 443322 356
Q ss_pred HHHHHHHHHhcCCCCCCCcEEE-E-cCCCCCC
Q 004866 674 AAKWVARVRESTIYDPKRPILL-N-LTTDIVE 703 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~-~-~~~gH~~ 703 (726)
+.+|.++|++++.. .+.+ + +++||..
T Consensus 233 ~~~~~~~l~~~g~~----~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 233 NQTFRDTYAADGGR----NGVFNFPPNGTHSW 260 (280)
T ss_dssp HHHHHHHHHHTTCC----SEEEECCSCCCSSH
T ss_pred HHHHHHHHHHcCCC----eEEEEEcCCCccCc
Confidence 78899999998753 3333 3 4578964
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.55 E-value=1.2e-13 Score=140.68 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=93.6
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKL 551 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 551 (726)
+.||.++++.=.-+ ....|+||++||.++.. ..|...+..|+++||.|+++|.||+|.+... .....
T Consensus 30 ~~~g~~~~y~~~G~-----~~~~p~llllHG~~~~~--~~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~------~~~~~ 96 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGN-----SDAEDVFLCLHGEPTWS--YLYRKMIPVFAESGARVIAPDFFGFGKSDKP------VDEED 96 (310)
T ss_dssp TCTTCEEEEEEEEC-----TTCSCEEEECCCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEE------SCGGG
T ss_pred CCCCEEEEEEEecC-----CCCCCEEEEECCCCCch--HHHHHHHHHhhccCceEEEeeecCccccccc------ccccc
Confidence 56899987532211 12358999999977643 5577788899999999999999999976321 11223
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 552 NSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 552 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.+++++.+.+..++++- +.+++.++||||||.+++.++.++|++++++|+..+..
T Consensus 97 ~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~ 151 (310)
T d1b6ga_ 97 YTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL 151 (310)
T ss_dssp CCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCC
T ss_pred ccccccccchhhhhhhc--cccccccccceecccccccchhhhccccceEEEEcCcc
Confidence 47888888888887652 34689999999999999999999999999999887653
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.55 E-value=1.6e-14 Score=137.91 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=119.8
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHH---c-
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIE---K- 567 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~---~- 567 (726)
+..|+||++||+.+. ...|....+.|+ .++.|+.++.+..+.....+. .....+.....|+...++.+.. .
T Consensus 15 ~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (203)
T d2r8ba1 15 AGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSEHGAARFF--RRTGEGVYDMVDLERATGKMADFIKAN 89 (203)
T ss_dssp TTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEETTEEESS--CBCGGGCBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEeccccccccccccc--cccCccccchhHHHHHHHHHHHHHHHh
Confidence 457999999996442 234555555554 467788887654332111111 1122233345555554444432 1
Q ss_pred -CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCc
Q 004866 568 -EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSP 646 (726)
Q Consensus 568 -~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 646 (726)
..+++++|+++|+|+||.+++.++..+|+.+.++++.+|...... ...
T Consensus 90 ~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~----------------~~~--------------- 138 (203)
T d2r8ba1 90 REHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP----------------KIS--------------- 138 (203)
T ss_dssp HHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------CCC---------------
T ss_pred hhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc----------------ccc---------------
Confidence 236889999999999999999999999999999999888653210 000
Q ss_pred ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 647 YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 647 ~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
.. ....|.+++||..|++||+.++.+++++|+++|++ +.+ ++ +||+... +......+||.++
T Consensus 139 ---~~-~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~-----v~~~~~~-ggH~~~~-----~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 139 ---PA-KPTRRVLITAGERDPICPVQLTKALEESLKAQGGT-----VETVWHP-GGHEIRS-----GEIDAVRGFLAAY 202 (203)
T ss_dssp ---CC-CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSE-----EEEEEES-SCSSCCH-----HHHHHHHHHHGGG
T ss_pred ---cc-cccchhhccccCCCCcccHHHHHHHHHHHHHCCCC-----EEEEEEC-CCCcCCH-----HHHHHHHHHHHhc
Confidence 01 13567889999999999999999999999999853 333 65 5897532 3344567898765
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.55 E-value=1.4e-13 Score=136.79 Aligned_cols=224 Identities=12% Similarity=0.075 Sum_probs=133.3
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
..||.++++.-. + ..|.||++||.++... ...|......| ++||.|+++|.||+|.+... ...
T Consensus 9 ~~~G~~~~Y~~~---G-----~G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G~G~S~~~-------~~~ 72 (271)
T d1uk8a_ 9 LAAGVLTNYHDV---G-----EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRP-------ENY 72 (271)
T ss_dssp EETTEEEEEEEE---C-----CSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-------TTC
T ss_pred EECCEEEEEEEE---e-----eCCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCCCCCcccc-------ccc
Confidence 458988875321 2 2366788999755331 11233344444 57999999999999976432 122
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc-----cCCCCCCCh--
Q 004866 551 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL-----LYPILPLIA-- 623 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-----~~~~~~~~~-- 623 (726)
....+++.+.+..++++- +.+++.++|+|+||.+++.++.++|++++++|+..|........ .....+...
T Consensus 73 ~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (271)
T d1uk8a_ 73 NYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENM 150 (271)
T ss_dssp CCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHH
T ss_pred cccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHHH
Confidence 346778888888777653 44789999999999999999999999999999887654221100 000000000
Q ss_pred -hhhcccCCC---CChh-------------HHHHHHh-------------cCcccccccCCCCCeEEEEecCCCCcChHH
Q 004866 624 -ADYEEFGYP---GDID-------------DFHAIRN-------------YSPYDNIQKDVLYPAVLVTSSFNTRFGVWE 673 (726)
Q Consensus 624 -~~~~~~g~~---~~~~-------------~~~~~~~-------------~sp~~~i~~~~~~P~lli~g~~D~~V~~~~ 673 (726)
.....+... .... ..+.+.. ......+.+ ++.|+|+|+|..|..+|+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~~~~~ 229 (271)
T d1uk8a_ 151 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKT-LPNETLIIHGREDQVVPLSS 229 (271)
T ss_dssp HHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTT-CCSCEEEEEETTCSSSCHHH
T ss_pred HHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHh-hccceeEEecCCCCCcCHHH
Confidence 000000000 0000 0011111 111223444 78999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 674 AAKWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 674 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
+..+.+.+... + +..++++||+.. .++..+....+.+||.+
T Consensus 230 ~~~~~~~~~~~------~-~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 230 SLRLGELIDRA------Q-LHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp HHHHHHHCTTE------E-EEEESSCCSCHH-HHTHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCC------E-EEEECCCCCchH-HHCHHHHHHHHHHHHhc
Confidence 88887776432 2 222789999632 22222334456788865
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.55 E-value=1.2e-13 Score=137.01 Aligned_cols=224 Identities=18% Similarity=0.104 Sum_probs=131.2
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
..||.+|++. ..+ ..|.||++||..+... ...|......| ++||.|+++|.||+|.+... ..
T Consensus 8 ~~dg~~l~y~---~~G-----~g~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~G~S~~~--------~~ 70 (268)
T d1j1ia_ 8 NAGGVETRYL---EAG-----KGQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGFGKTAKP--------DI 70 (268)
T ss_dssp EETTEEEEEE---EEC-----CSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC--------SS
T ss_pred EECCEEEEEE---EEc-----CCCeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccccccccCC--------cc
Confidence 3599888742 222 2356888999765331 12244445555 67999999999999975321 22
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccc--cCC--CCCCCh---
Q 004866 551 LNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTL--LYP--ILPLIA--- 623 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~--~~~--~~~~~~--- 623 (726)
...++++...+..++++-.. .+++.++|+|+||.+++.++.++|++++++|+.+|..-..... ... ......
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 34567777666666654222 2578999999999999999999999999999887643221100 000 000000
Q ss_pred -hhhcc-c--CCCCChhH--------------------HHHHHhcC----cccccccCCCCCeEEEEecCCCCcChHHHH
Q 004866 624 -ADYEE-F--GYPGDIDD--------------------FHAIRNYS----PYDNIQKDVLYPAVLVTSSFNTRFGVWEAA 675 (726)
Q Consensus 624 -~~~~~-~--g~~~~~~~--------------------~~~~~~~s----p~~~i~~~~~~P~lli~g~~D~~V~~~~~~ 675 (726)
..... . +.....+. ...+.... ....+.+ ++.|+|+|+|+.|..+|++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~l~i~G~~D~~~~~~~~~ 228 (268)
T d1j1ia_ 150 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRK-VQVPTLVVQGKDDKVVPVETAY 228 (268)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTT-CCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhh-CCCCEEEEEeCCCCCCCHHHHH
Confidence 00000 0 10011000 00011111 1122343 7899999999999999999988
Q ss_pred HHHHHHHhcCCCCCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 676 KWVARVRESTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 676 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
++.+.+... + +.+++++||...- ++..+....+.+||.+
T Consensus 229 ~~~~~~~~~------~-~~~~~~~gH~~~~-e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 229 KFLDLIDDS------W-GYIIPHCGHWAMI-EHPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHHCTTE------E-EEEESSCCSCHHH-HSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC------E-EEEECCCCCchHH-hCHHHHHHHHHHHHcC
Confidence 888777432 2 2227999996322 2222334456788865
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.55 E-value=1.1e-13 Score=137.93 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=85.1
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
++...++..|... |-. .+..|.||++||.++.. ..|...+..|+++||.|+++|.||+|.+...
T Consensus 4 ~~~~~~~~~v~i~--y~~----~G~G~~ivllHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-------- 67 (277)
T d1brta_ 4 TVGQENSTSIDLY--YED----HGTGQPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQP-------- 67 (277)
T ss_dssp EEEEETTEEEEEE--EEE----ECSSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEecCcCCcEEEE--EEE----EccCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEeCCCCCccccc--------
Confidence 3445555555542 221 12346788999976643 4578888889999999999999999876321
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccH-HHHHHHHHcCCCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGG-LLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG-~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
....+++++.+.+..++++ .+.+++.++|||+|| .++..++..+|++++++|+..++.
T Consensus 68 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~ 126 (277)
T d1brta_ 68 TTGYDYDTFAADLNTVLET--LDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLE 126 (277)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred ccccchhhhhhhhhhhhhc--cCcccccccccccchhhhhHHHHHhhhcccceEEEecCCC
Confidence 1224567776666666654 234689999999996 455556777899999999887654
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.55 E-value=8.4e-14 Score=136.16 Aligned_cols=210 Identities=15% Similarity=0.061 Sum_probs=128.1
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 004866 495 PGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHK 574 (726)
Q Consensus 495 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 574 (726)
|.||++||.++.. ..|...+..|+++||.|+++|+||+|.+... ......+.+....+..++..... ..+
T Consensus 3 ~~vvllHG~~~~~--~~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHGG--WSWYKLKPLLEAAGHKVTALDLAASGTDLRK-------IEELRTLYDYTLPLMELMESLSA-DEK 72 (258)
T ss_dssp CEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEECCCTTSTTCCCC-------GGGCCSHHHHHHHHHHHHHTSCS-SSC
T ss_pred CcEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEecCCCCCCCCCC-------CCCCcchHHHHHHHhhhhhcccc-ccc
Confidence 5788899976643 4688888999999999999999999976432 11224566666666656554332 368
Q ss_pred EEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccccc----------CCCCCC--------------------Chh
Q 004866 575 LAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLL----------YPILPL--------------------IAA 624 (726)
Q Consensus 575 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~----------~~~~~~--------------------~~~ 624 (726)
+.++|||+||.+++.++.++|++++.+|+..|......... ...... ...
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 89999999999999999999999999998877542211000 000000 000
Q ss_pred hhc-ccCCCCChhHH--------------HHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCC
Q 004866 625 DYE-EFGYPGDIDDF--------------HAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDP 689 (726)
Q Consensus 625 ~~~-~~g~~~~~~~~--------------~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 689 (726)
... ........+.. ..+........... +..|+++|+|+.|..+|+..+..+.+.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~----- 226 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERF-GSVKRVYIVCTEDKGIPEEFQRWQIDNIGVT----- 226 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTG-GGSCEEEEEETTCTTTTHHHHHHHHHHHCCS-----
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccc-cccceeEeeecCCCCCCHHHHHHHHHHCCCC-----
Confidence 000 00000001111 11111222233333 6789999999999999999888888777432
Q ss_pred CCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 690 KRPILLNLTTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 690 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
+.+. .+++||...- ++-.+......+|+.++
T Consensus 227 -~~~~-i~~~gH~~~~-e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 227 -EAIE-IKGADHMAML-CEPQKLCASLLEIAHKY 257 (258)
T ss_dssp -EEEE-ETTCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred -EEEE-ECCCCCchHH-hCHHHHHHHHHHHHHhc
Confidence 2233 7999996322 22222333456777654
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.55 E-value=6e-14 Score=140.64 Aligned_cols=215 Identities=14% Similarity=0.108 Sum_probs=122.2
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELL-DKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
.++++ ++.++++... + . ...|+||++||..+... ...|...+..|+ +||.|+++|.||+|.+...-. .
T Consensus 7 ~~~~~-~~~~~h~~~~---G-~--~~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~~~---~ 75 (281)
T d1c4xa_ 7 KRFPS-GTLASHALVA---G-D--PQSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIGFGQSEYPET---Y 75 (281)
T ss_dssp EEECC-TTSCEEEEEE---S-C--TTSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTTSTTSCCCSS---C
T ss_pred EEEcc-CCEEEEEEEE---e-c--CCCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCCCcccccccc---c
Confidence 34443 5567776442 2 1 23589999999654332 123555566664 599999999999997633211 0
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccccccc-----------cc
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNT-----------LL 615 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-----------~~ 615 (726)
........++.+..+..++++- ..+++.++|||+||.+++.++.++|++++++|+..|....... ..
T Consensus 76 ~~~~~~~~~~~~~~i~~~i~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~ 153 (281)
T d1c4xa_ 76 PGHIMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYA 153 (281)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGG
T ss_pred cccchhhHHHhhhhcccccccc--ccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhh
Confidence 1111123344444444444332 2368999999999999999999999999999988875322110 00
Q ss_pred CCCCCCChhhhccc-CCCCC----hhHHHH------------H-----Hh--------cCcccccccCCCCCeEEEEecC
Q 004866 616 YPILPLIAADYEEF-GYPGD----IDDFHA------------I-----RN--------YSPYDNIQKDVLYPAVLVTSSF 665 (726)
Q Consensus 616 ~~~~~~~~~~~~~~-g~~~~----~~~~~~------------~-----~~--------~sp~~~i~~~~~~P~lli~g~~ 665 (726)
.............+ ..+.. ...... + .. ..+...+.+ ++.|+|+++|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~ 232 (281)
T d1c4xa_ 154 DPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGR-LPHDVLVFHGRQ 232 (281)
T ss_dssp SCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTT-CCSCEEEEEETT
T ss_pred hcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhh-hccceEEEEeCC
Confidence 00000000000011 11110 000000 0 00 011122343 789999999999
Q ss_pred CCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCC
Q 004866 666 NTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVE 703 (726)
Q Consensus 666 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 703 (726)
|..+|+..+.++.+.+... .+.+++++||..
T Consensus 233 D~~~~~~~~~~~~~~~~~~-------~~~~i~~~gH~~ 263 (281)
T d1c4xa_ 233 DRIVPLDTSLYLTKHLKHA-------ELVVLDRCGHWA 263 (281)
T ss_dssp CSSSCTHHHHHHHHHCSSE-------EEEEESSCCSCH
T ss_pred CCCcCHHHHHHHHHHCCCC-------EEEEECCCCCch
Confidence 9999999998888776432 222378999963
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=3.1e-12 Score=127.10 Aligned_cols=250 Identities=11% Similarity=0.068 Sum_probs=162.9
Q ss_pred CEEEEEEeCCCC-cEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEee
Q 004866 134 KFLAYTMYDKDN-DYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLE 211 (726)
Q Consensus 134 ~~la~~~~~~g~-e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~ 211 (726)
++|||+++..|+ ..++|||+|.+++....++. .....+++|||||++|+|++... ....+|.++..++....++.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~--~~~~~~~~~~~~~~~~~~~~- 80 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVAS- 80 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEEC-
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeec--cCcceeeeecccCceeEEee-
Confidence 789999988654 56789999999988877765 44556899999999999997542 34578888987765433332
Q ss_pred ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecCcccCCCCCC
Q 004866 212 ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDAAKEGQEADN 290 (726)
Q Consensus 212 ~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~~~~~~~~~~ 290 (726)
.... -..+.|||||+.|++.........+....... ........... .....++++++.+++.+...+ .
T Consensus 81 ~~~~--~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~ 150 (269)
T d2hqsa1 81 FPRH--NGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG------R 150 (269)
T ss_dssp CSSC--EEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEEEECTTS------S
T ss_pred eecc--cccceecCCCCeeeEeeecCCccceeeccccc--ccceeeeeccccccccccccccccceecccccC------C
Confidence 2222 23468999999999998877766766666554 22233222222 233455677888888877654 2
Q ss_pred eEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCc
Q 004866 291 HYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKY 370 (726)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 370 (726)
..|+..+++ . .....+...........+...++.+++....+|...+++++...+. .+ .+..+..
T Consensus 151 ~~i~~~~~~-~---~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~----~~-------~~~~~~~ 215 (269)
T d2hqsa1 151 PQVYKVNIN-G---GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQ-------VLSSTFL 215 (269)
T ss_dssp CEEEEEETT-S---SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----EE-------ECCCSSS
T ss_pred ceEeeeecc-c---ccceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc----ce-------EeecCcc
Confidence 567888776 2 2333333222212223455567888888888999999999875432 11 1111111
Q ss_pred eeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEee
Q 004866 371 VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQ 416 (726)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~ 416 (726)
.. ...+++|++.|+|+. .......||.++++++..++|+..
T Consensus 216 ~~----~p~~SPDG~~i~f~s-~~~~~~~l~~~~~dg~~~~~lt~~ 256 (269)
T d2hqsa1 216 DE----TPSLAPNGTMVIYSS-SQGMGSVLNLVSTDGRFKARLPAT 256 (269)
T ss_dssp CE----EEEECTTSSEEEEEE-EETTEEEEEEEETTSCCEEECCCS
T ss_pred cc----ceEECCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEeCC
Confidence 11 123578999998864 345567899999998887776644
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.54 E-value=6.8e-14 Score=140.32 Aligned_cols=207 Identities=12% Similarity=0.062 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
.|+||++||..... ..|.. ....++++||.|+++|.||+|.+.... .......+..+.+..++++ .
T Consensus 30 G~~ivllHG~~~~~--~~~~~~~~~l~~~~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~i~~li~~--l 98 (283)
T d2rhwa1 30 GETVIMLHGGGPGA--GGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVV-------MDEQRGLVNARAVKGLMDA--L 98 (283)
T ss_dssp SSEEEEECCCSTTC--CHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCCC-------CSSCHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCCCCCh--hHHHHHHHHHHHHHHCCCEEEEEeCCCCccccccc-------ccccccchhhhhccccccc--c
Confidence 47888999975543 23333 245677899999999999999753321 1112333344444444443 2
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCC-------------Chh----hhcccC-CC
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPL-------------IAA----DYEEFG-YP 632 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~-------------~~~----~~~~~g-~~ 632 (726)
+.+++.++|||+||.+++.++.++|++++++|+..|..-..... ...+. ... ....+. .+
T Consensus 99 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (283)
T d2rhwa1 99 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMF--APMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQ 176 (283)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSS--SCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCG
T ss_pred cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchh--hhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccc
Confidence 34689999999999999999999999999999988643111100 00000 000 000000 00
Q ss_pred --CChhHH----HHHH-------------------hcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCC
Q 004866 633 --GDIDDF----HAIR-------------------NYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIY 687 (726)
Q Consensus 633 --~~~~~~----~~~~-------------------~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~ 687 (726)
..++.. ..+. ..+....+.+ ++.|+++++|..|..+|+..+.++.+.+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~--- 252 (283)
T d2rhwa1 177 SLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE-IKAKTFITWGRDDRFVPLDHGLKLLWNIDDA--- 252 (283)
T ss_dssp GGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGG-CCSCEEEEEETTCSSSCTHHHHHHHHHSSSE---
T ss_pred ccCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhh-CCCCEEEEEeCCCCCcCHHHHHHHHHhCCCC---
Confidence 011110 0000 0122233444 7899999999999999999999988877432
Q ss_pred CCCCcEEEEcCCCCCCCchhhHHHHHHHHHHHHHH
Q 004866 688 DPKRPILLNLTTDIVEENRYLQCKESALETAFLIK 722 (726)
Q Consensus 688 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 722 (726)
+ +.+++++||...- ++..+..+.+.+||++
T Consensus 253 ---~-~~~i~~~gH~~~~-e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 253 ---R-LHVFSKCGHWAQW-EHADEFNRLVIDFLRH 282 (283)
T ss_dssp ---E-EEEESSCCSCHHH-HTHHHHHHHHHHHHHH
T ss_pred ---E-EEEECCCCCchHH-hCHHHHHHHHHHHHhC
Confidence 2 2237899995322 2222233455788864
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.2e-12 Score=138.94 Aligned_cols=266 Identities=11% Similarity=0.060 Sum_probs=156.7
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccccc--------------------ccceeEEecCCCEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAV--------------------RVSNIAWAKDGQALIY 183 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~--------------------~~~~~~WspDg~~l~y 183 (726)
+..+.|||||++|||+.+ + +||+++..+++..+++..+ ....+.|||||++|+|
T Consensus 116 l~~~~wSPDG~~iafv~~--~----nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf 189 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIFE--N----NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (465)
T ss_dssp CSBCCBCSSTTCEEEEET--T----EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred cceeeeccCCceEEEEec--c----eEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEE
Confidence 456789999999999863 2 5999999988777655311 1245789999999999
Q ss_pred EEecCCCC-----------------------------CceEEEEEcCCCCceeEEeee----cCCceEEEEEEcCCCcEE
Q 004866 184 VVTDQNKR-----------------------------PYQIYCSIIGSTDEDALLLEE----SNENVYVNIRHTKDFHFV 230 (726)
Q Consensus 184 ~~~~~~~~-----------------------------~~~l~~~~l~t~~~~~lv~~~----~d~~~~~~~~~s~Dg~~l 230 (726)
.+.+...- ..+|+++++.++......... ....+...+.|++|++.+
T Consensus 190 ~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~ 269 (465)
T d1xfda1 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA 269 (465)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred EEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEE
Confidence 98765420 024677777665432222111 122344568999999977
Q ss_pred EEEEcCCCc-eEEEEEeCCCCCCCeEEeeccC-Cc------eEEeeeecCCEEEEEec--CcccCCCCCCeEEEEeeCC-
Q 004866 231 CVHTFSTTS-SKVFLINAADPFSGLTLIWECE-GL------AHCIVEHHEGFLYLFTD--AAKEGQEADNHYLLRCPVD- 299 (726)
Q Consensus 231 ~~~~~~~~~-~~l~~~d~~~~~~~~~~l~~~~-~~------~~~~~~~~g~~l~~~t~--~~~~~~~~~~~~l~~~~~~- 299 (726)
+...++... ..++++|..++ ..+.+.... ++ ....++++|+.++|+.. .++. ..+..+.+...
T Consensus 270 ~~~~nR~q~~~~i~~~d~~tg--~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~----~~ly~~~~~~~~ 343 (465)
T d1xfda1 270 VTWLNRAQNVSILTLCDATTG--VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR----GKFYHITVSSSQ 343 (465)
T ss_dssp EEEEETTSCEEEEEEEETTTC--CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS----SCEEEEEEECSS
T ss_pred EEEEccccccceEEEEcCCCC--cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeeccc----CceEEEEecccc
Confidence 777776644 68999999884 444443322 11 22456788988776643 2221 12333333211
Q ss_pred CCCCCCCceEEeecCCCc-eEEEEeeeCCEEEEEEEeCC--eeEEEEEecCCCCCCcceeecccccccccCCC--ceeee
Q 004866 300 ASFPSRTWESVFIDDQGL-VVEDVDFCKTHMALILREGR--TYRLCSVSLPLPAGKGVVHLKELHPHFLPLPK--YVSQI 374 (726)
Q Consensus 300 ~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~lv~~~~~~g--~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~--~~~~~ 374 (726)
........+.|..+..++ .+..++..++.+|+....++ ..+|++++++....+ ..+ ...+.. ...+
T Consensus 344 ~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~l------t~~~~~~~~~~~- 414 (465)
T d1xfda1 344 PNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCL------SCDLVENCTYFS- 414 (465)
T ss_dssp CCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCS------STTSSSSCCCCE-
T ss_pred ccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eee------ccccCCCCCEEE-
Confidence 011122233343333332 23345555688998887654 457999988743210 001 111111 1122
Q ss_pred ecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeE-EEEE
Q 004866 375 VPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKW-NIIQ 414 (726)
Q Consensus 375 ~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~-~~~~ 414 (726)
..++++++.++.+++++..|. +..++..+++. ..|.
T Consensus 415 ---~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 415 ---ASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLE 451 (465)
T ss_dssp ---EEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEE
T ss_pred ---EEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEc
Confidence 235788999999999999887 55666666654 4444
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=3.2e-12 Score=126.98 Aligned_cols=206 Identities=14% Similarity=0.091 Sum_probs=141.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
+..++|||||++|||+.+..+. ..+++++..++....++. ......+.|||||+.|++...... ...+.......
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~--~~~~~~~~~~~ 116 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--SLNLYVMDLAS 116 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSS--CEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTT
T ss_pred eeeeEECCCCCEEEEEEeeccC--cceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC--ccceeeccccc
Confidence 4578999999999999876554 568999999998776655 445677899999999999865432 22344433333
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEecC
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t~~ 281 (726)
.. ...+.. .......+.++++++.+++.+.......+++.++.++ ....+..... .....++++|+.+++.++.
T Consensus 117 ~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 191 (269)
T d2hqsa1 117 GQ-IRQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFMVMVSSN 191 (269)
T ss_dssp CC-EEECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred cc-ceeeee--ccccccccccccccccceecccccCCceEeeeecccc--cceeeecccccccccccccccceeEEEeec
Confidence 22 111111 1222234678999999999988888889999999874 3334433322 2345678999999998876
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
.+ ...++..+.. .....++..........+++.+++|++....++...|++++++++
T Consensus 192 ~~------~~~i~~~~~~-----~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 192 GG------QQHIAKQDLA-----TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp SS------CEEEEEEETT-----TCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC------ceeeeEeecc-----cccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 54 3667777765 122334433333334467778899999999999999999998753
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=7.6e-14 Score=139.24 Aligned_cols=218 Identities=16% Similarity=0.088 Sum_probs=134.3
Q ss_pred EEEEEEECC-CCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccCCCCCCCCc
Q 004866 465 CEQYDVPSH-DGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVRGGGGGGKK 540 (726)
Q Consensus 465 ~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~~ 540 (726)
+|.++++|. .|..|+..+..+ ..|+|++.||..+......|.. ..+.+.++|++|++||-- .+.+...
T Consensus 4 ~e~~~v~s~~~~r~~~~~v~~~-------~~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~-~~~~y~~ 75 (267)
T d1r88a_ 4 YENLMVPSPSMGRDIPVAFLAG-------GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGG-AYSMYTN 75 (267)
T ss_dssp CEEEEEEETTTTEEEEEEEECC-------SSSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCC-TTSTTSB
T ss_pred eEEEEEecccCCceeeEEEECC-------CCCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCC-CCcCCcc
Confidence 567778764 577899766432 2489999999655333334533 346667789999999842 2233344
Q ss_pred ccccccccCCCCcHHHHHH--HHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCC
Q 004866 541 WHHDGRRTKKLNSIKDFIS--CARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPI 618 (726)
Q Consensus 541 ~~~~~~~~~~~~~~~D~~~--~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~ 618 (726)
|... +...+++++. .+.++.++-.+|++|++|+|.||||++++.++.++|++|+++++.+|.+++........
T Consensus 76 ~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~~ 150 (267)
T d1r88a_ 76 WEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGA 150 (267)
T ss_dssp CSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHH
T ss_pred cccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchhh
Confidence 4332 2234666654 56677777678999999999999999999999999999999999999887543211000
Q ss_pred CCCCh------hhhcccCCCCChhHHHHHHhcCcccccccC-CCCCeEEEEec-CCCCcC-----------hHHHHHHHH
Q 004866 619 LPLIA------ADYEEFGYPGDIDDFHAIRNYSPYDNIQKD-VLYPAVLVTSS-FNTRFG-----------VWEAAKWVA 679 (726)
Q Consensus 619 ~~~~~------~~~~~~g~~~~~~~~~~~~~~sp~~~i~~~-~~~P~lli~g~-~D~~V~-----------~~~~~~~~~ 679 (726)
..... .....+|.+.. ..+.+++|+.++++. ...+.+++.++ .|..+. ...+.++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
T d1r88a_ 151 IAAGMQQFGGVDTNGMWGAPQL----GRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYN 226 (267)
T ss_dssp HHHHHHHHHCCCTHHHHCCGGG----STTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHH
T ss_pred hhhHHhhhcCCcHhhccCCcch----HhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHHH
Confidence 00000 00011233221 224566787766531 12334555554 444433 245678889
Q ss_pred HHHhcCCCCCCCcEEE--EcCCCCCC
Q 004866 680 RVRESTIYDPKRPILL--NLTTDIVE 703 (726)
Q Consensus 680 ~L~~~~~~~~~~~~~~--~~~~gH~~ 703 (726)
+|++++. .++.+ .+++||..
T Consensus 227 ~l~~~~g----~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 227 QYRSVGG----HNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHTTC----CSEEEECCSSCCSSH
T ss_pred HHHHcCC----CcEEEEEcCCCeECh
Confidence 9998763 34555 45788963
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.53 E-value=1.4e-14 Score=145.09 Aligned_cols=151 Identities=11% Similarity=0.001 Sum_probs=101.3
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCc-cc----hHHHHHHH----HCCcEEEEEc
Q 004866 460 SEFYSCEQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDK-RW----RSELKSLL----DRGWVVAFAD 530 (726)
Q Consensus 460 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~-~~----~~~~~~l~----~~G~~v~~~d 530 (726)
+...+.+.+++++.+|+ .+++|+.|+++++++++|+|+++||+.+..... .+ ......+. ..+++|+.++
T Consensus 22 ~~~g~v~~~~~~~~~~~-r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (273)
T d1wb4a1 22 PQAGRIVKETYTGINGT-KSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPT 100 (273)
T ss_dssp SSCCEEEEEEEEETTEE-EEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECC
T ss_pred CCCCeEEEEEEecCCCe-EEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccc
Confidence 34568899999999995 589999999988888999999999986643211 11 11122222 2478999999
Q ss_pred cCCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 004866 531 VRGGGGGGKKWHHDGRRTKKLN-SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLD 609 (726)
Q Consensus 531 ~RG~g~~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 609 (726)
.++.+..+..+........... ...++...++.+..+..+|++|++|+|+|+||++++.++.++|++|+++++.+|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~ 180 (273)
T d1wb4a1 101 FNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYW 180 (273)
T ss_dssp SCSTTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCC
T ss_pred cCCCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccc
Confidence 9887766555433211110000 000011111222223347999999999999999999999999999999999999765
Q ss_pred cc
Q 004866 610 AT 611 (726)
Q Consensus 610 ~~ 611 (726)
+.
T Consensus 181 ~~ 182 (273)
T d1wb4a1 181 YG 182 (273)
T ss_dssp BS
T ss_pred cC
Confidence 43
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.52 E-value=1.8e-12 Score=129.35 Aligned_cols=250 Identities=10% Similarity=0.029 Sum_probs=152.5
Q ss_pred eeeCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCC-CCCceEEEEEcCC
Q 004866 127 SEVSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQN-KRPYQIYCSIIGS 202 (726)
Q Consensus 127 ~~~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~-~~~~~l~~~~l~t 202 (726)
+.+||| |++|||+.+ | +||++|+++|+..+++. ......++|||||++|+|++.... ....+||++++.+
T Consensus 4 ~~~sPdi~G~~v~f~~~--~----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--D----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CCEEEEEETTEEEEEET--T----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred cccCCCCCCCEEEEEeC--C----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 357999 999999853 3 49999999999988876 456678999999999999976433 2345799999987
Q ss_pred CCceeEEeeec---CC-ceEEEEEEcCCCcEEEEEEcCCCc---eEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEE
Q 004866 203 TDEDALLLEES---NE-NVYVNIRHTKDFHFVCVHTFSTTS---SKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFL 275 (726)
Q Consensus 203 ~~~~~lv~~~~---d~-~~~~~~~~s~Dg~~l~~~~~~~~~---~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l 275 (726)
++...+..... .. .....+.|+|||+.|++....... ..++.++..+ +.++... .......+.++++.+
T Consensus 78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~ 153 (281)
T d1k32a2 78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG--INFVPLN--LGPATHILFADGRRV 153 (281)
T ss_dssp TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGG--TEEEECC--SCSCSEEEEETTEEE
T ss_pred CceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCC--ceeEEec--CCccceeeecCCCeE
Confidence 76433332211 11 111357899999999988765432 4567777765 3333322 222234455677776
Q ss_pred EEEecCcccC-C----CCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCCC
Q 004866 276 YLFTDAAKEG-Q----EADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLPA 350 (726)
Q Consensus 276 ~~~t~~~~~~-~----~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~~ 350 (726)
++........ . ......+...... ....+. .. ........+.++.+++....++..+|++++++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 225 (281)
T d1k32a2 154 IGRNTFELPHWKGYRGGTRGKIWIEVNSG------AFKKIV-DM-STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD 225 (281)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETT------EEEEEE-CC-SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCS
T ss_pred EEeeccccceeeeeccCCcceeeeecccc------ceeecc-CC-ccccceeeeeccccceecccccccceEEEeCCCCc
Confidence 6665533211 0 0001111111111 111111 11 12233455667888888888899999999987543
Q ss_pred CCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 351 GKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 351 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
..+ +........ ..+++|++.|+|... ..||.+|+++++.+.|.
T Consensus 226 ---~~~--------lt~~~~~~~----~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 226 ---LRK--------HTSFTDYYP----RHLNTDGRRILFSKG-----GSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp ---CEE--------CCCCCSSCE----EEEEESSSCEEEEET-----TEEEEECTTTCCEEECC
T ss_pred ---eEE--------eecCCCccc----ccCcCCCCEEEEEeC-----CEEEEEECCCCCEEEec
Confidence 111 211111111 123578888888654 48999999999988764
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.52 E-value=2.4e-13 Score=131.21 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=119.4
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEEccC------CCCCCCCccccccccc-CCCCcHHHHHH---H
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDR--GWVVAFADVR------GGGGGGKKWHHDGRRT-KKLNSIKDFIS---C 560 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~R------G~g~~g~~~~~~~~~~-~~~~~~~D~~~---~ 560 (726)
+.|+||++||. |. ....|......|.+. ++.+++++-+ +.+..+..|+...... ......+++.+ .
T Consensus 13 ~~~~Vi~lHG~-G~-~~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (218)
T d1auoa_ 13 ADACVIWLHGL-GA-DRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAKM 90 (218)
T ss_dssp CSEEEEEECCT-TC-CTTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHHH
T ss_pred CCeEEEEEcCC-CC-ChhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHHH
Confidence 45799999984 22 234566666777654 5666666532 1222234565432221 12223333333 2
Q ss_pred HHHHHH---cCCCCCCcEEEEEecccHHHHHHHH-HcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChh
Q 004866 561 ARFLIE---KEIVKEHKLAGWGYSAGGLLVAAAI-NCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDID 636 (726)
Q Consensus 561 ~~~l~~---~~~~d~~ri~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 636 (726)
+..+++ +..+|++||+++|+|+||.+++.++ .+.+..+.++|+.++...... . ......
T Consensus 91 v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~----~-------------~~~~~~ 153 (218)
T d1auoa_ 91 VTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG----D-------------ELELSA 153 (218)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC----T-------------TCCCCH
T ss_pred HHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCcccc----c-------------ccccch
Confidence 333332 2347999999999999999998775 445678999998887542210 0 000000
Q ss_pred HHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHHHH
Q 004866 637 DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKESA 714 (726)
Q Consensus 637 ~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~~~ 714 (726)
. ..+.|++++||..|..||+.++.++++.|+++|++ +.+ + +.||.... ++..
T Consensus 154 ~---------------~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~-----~~~~~~-~~gH~i~~-----~~~~ 207 (218)
T d1auoa_ 154 S---------------QQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVT-----VTWQEY-PMGHEVLP-----QEIH 207 (218)
T ss_dssp H---------------HHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCC-----EEEEEE-SCSSSCCH-----HHHH
T ss_pred h---------------ccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCC-----EEEEEE-CCCCccCH-----HHHH
Confidence 0 13579999999999999999999999999998843 333 5 57896532 3456
Q ss_pred HHHHHHHHhhc
Q 004866 715 LETAFLIKMME 725 (726)
Q Consensus 715 ~~~~fl~~~l~ 725 (726)
+..+||.+.||
T Consensus 208 ~i~~wl~~~lg 218 (218)
T d1auoa_ 208 DIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 78899999987
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.50 E-value=1.6e-13 Score=134.40 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=79.5
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCCcEE
Q 004866 497 LLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEHKLA 576 (726)
Q Consensus 497 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 576 (726)
+|++||..++. ..|...+..|.++||.|+++|.||+|.+... .....+++++.+.+..++.+. ...+++.
T Consensus 5 ~vliHG~~~~~--~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~-------~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHGA--WIWHKLKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCCH--HHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 46789876543 5688888999999999999999999976422 112346777777776665442 2347899
Q ss_pred EEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 577 GWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 577 i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
++|||+||.+++.++.++|++++++|+..+..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 106 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVL 106 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCC
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheecccc
Confidence 99999999999999999999999999887654
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.48 E-value=7.3e-13 Score=132.01 Aligned_cols=122 Identities=18% Similarity=0.249 Sum_probs=85.5
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
++.+.++..|.. +|... +..|.||++||.++.. ..|...+..|+++||.|+++|.||+|.+...
T Consensus 4 ~~~~~~~~~v~i--~y~~~----G~g~~illlHG~~~~~--~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~-------- 67 (279)
T d1hkha_ 4 TVGNENSTPIEL--YYEDQ----GSGQPVVLIHGYPLDG--HSWERQTRELLAQGYRVITYDRRGFGGSSKV-------- 67 (279)
T ss_dssp EEEEETTEEEEE--EEEEE----SSSEEEEEECCTTCCG--GGGHHHHHHHHHTTEEEEEECCTTSTTSCCC--------
T ss_pred EEecCCCCeEEE--EEEEE----ccCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEechhhCCcccc--------
Confidence 444555555543 33221 2347788999976643 4678888889999999999999999976322
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccH-HHHHHHHHcCCCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGG-LLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG-~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
....+++++...+..+++. .+.+++.++|||+|| .++..++..+|++++++|+.++..
T Consensus 68 ~~~~~~~~~~~di~~~i~~--l~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~ 126 (279)
T d1hkha_ 68 NTGYDYDTFAADLHTVLET--LDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLE 126 (279)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred ccccchhhhhhhhhhhhhh--cCcCccccccccccccchhhhhccccccccceeEEeeccC
Confidence 1234677777666666654 244689999999996 555566777899999999887654
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.46 E-value=3.7e-13 Score=135.09 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=87.1
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
.||.+|++...-+ + ..|+||++||.++.. ..|...+..| .+||.|+++|.||+|.+... ....
T Consensus 14 ~~g~~i~y~~~G~----~--~~p~lvllHG~~~~~--~~~~~~~~~L-~~~~~vi~~d~~G~G~S~~~--------~~~~ 76 (291)
T d1bn7a_ 14 VLGERMHYVDVGP----R--DGTPVLFLHGNPTSS--YLWRNIIPHV-APSHRCIAPDLIGMGKSDKP--------DLDY 76 (291)
T ss_dssp ETTEEEEEEEESC----S--SSSCEEEECCTTCCG--GGGTTTHHHH-TTTSCEEEECCTTSTTSCCC--------SCCC
T ss_pred ECCEEEEEEEeCC----C--CCCeEEEECCCCCCH--HHHHHHHHHH-hcCCEEEEEeCCCCcccccc--------cccc
Confidence 4898988644321 1 236788899977644 4566667776 45999999999999976321 1234
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
+++++.+.+..++++ .+-+++.++|||+||.+++.++.++|++++++++..+..
T Consensus 77 ~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~ 130 (291)
T d1bn7a_ 77 FFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIR 130 (291)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECC
T ss_pred chhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeecccc
Confidence 678888877777765 344789999999999999999999999999998865443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.46 E-value=3.5e-11 Score=130.01 Aligned_cols=124 Identities=16% Similarity=0.209 Sum_probs=85.5
Q ss_pred CCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCC----CCcEEEEEEEECCCCceecccc-ccccceeEEecC
Q 004866 103 KIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDK----DNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKD 177 (726)
Q Consensus 103 ~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~----g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspD 177 (726)
+.+++|++...+..... .+..++|||||++|||..+.. -+...+++++|+++|+...++. ......+.||||
T Consensus 46 ~~~~~~~~~~~~~~~~~---~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPD 122 (470)
T d2bgra1 46 GNSSVFLENSTFDEFGH---SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPV 122 (470)
T ss_dssp CCEEEEECTTTTTTSSS---CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSS
T ss_pred CCEEEEEchhhhhhccC---ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccC
Confidence 55678888776654322 466788999999999987532 1334679999999998877655 456678999999
Q ss_pred CCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCC----------------ceEEEEEEcCCCcEEEEEEc
Q 004866 178 GQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNE----------------NVYVNIRHTKDFHFVCVHTF 235 (726)
Q Consensus 178 g~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~----------------~~~~~~~~s~Dg~~l~~~~~ 235 (726)
|+.|+|.+. ..+|+.++.++....++...... .....+.|||||++|++...
T Consensus 123 G~~ia~~~~------~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~ 190 (470)
T d2bgra1 123 GHKLAYVWN------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (470)
T ss_dssp TTCEEEEET------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred cceeeEeec------ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence 999999742 36888888766533222111110 01123579999999998753
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.44 E-value=3.4e-12 Score=127.91 Aligned_cols=123 Identities=19% Similarity=0.174 Sum_probs=88.3
Q ss_pred EEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccc
Q 004866 468 YDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRR 547 (726)
Q Consensus 468 ~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 547 (726)
..+.. +|.+|++... +..|+||++||.++.. ..|...+..|+ +||.|+++|+||+|.+.... ..
T Consensus 11 ~~~~~-~~~~l~y~~~--------G~gp~vv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~~----~~ 74 (293)
T d1ehya_ 11 YEVQL-PDVKIHYVRE--------GAGPTLLLLHGWPGFW--WEWSKVIGPLA-EHYDVIVPDLRGFGDSEKPD----LN 74 (293)
T ss_dssp EEEEC-SSCEEEEEEE--------ECSSEEEEECCSSCCG--GGGHHHHHHHH-TTSEEEEECCTTSTTSCCCC----TT
T ss_pred eEEEE-CCEEEEEEEE--------CCCCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEecCCcccCCcccc----cc
Confidence 34444 6778875331 2347899999976643 45777777775 48999999999998653221 11
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 548 TKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 548 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.....+++++...+..++++ ...+++.|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 75 ~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 75 DLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp CGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred ccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccC
Confidence 11224567777777666654 234689999999999999999999999999999988754
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.42 E-value=3.4e-12 Score=128.48 Aligned_cols=126 Identities=18% Similarity=0.127 Sum_probs=89.9
Q ss_pred EEEEEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccc
Q 004866 466 EQYDVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDG 545 (726)
Q Consensus 466 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 545 (726)
+.-++++.||.+|.+...=++ + .|.||++||.++.. ..|..... ++.+||.|+++|.||+|.+...
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~----~--g~pvvllHG~~~~~--~~w~~~~~-~l~~~~~vi~~D~rG~G~S~~~----- 77 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNP----N--GKPAVFIHGGPGGG--ISPHHRQL-FDPERYKVLLFDQRGCGRSRPH----- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECT----T--SEEEEEECCTTTCC--CCGGGGGG-SCTTTEEEEEECCTTSTTCBST-----
T ss_pred cCCEEEeCCCcEEEEEEecCC----C--CCeEEEECCCCCcc--cchHHHHH-HhhcCCEEEEEeCCCccccccc-----
Confidence 345677889999887554222 2 35678889987754 34554443 3457999999999999976321
Q ss_pred cccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 546 RRTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 546 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
.........++.+.+..++++ ....++.++|+|+||.++..++..+|++++++++..+..
T Consensus 78 -~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~ 137 (313)
T d1wm1a_ 78 -ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 137 (313)
T ss_dssp -TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred -ccccccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccc
Confidence 122234566666666666654 244789999999999999999999999999999887654
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=2.5e-12 Score=129.12 Aligned_cols=244 Identities=13% Similarity=0.110 Sum_probs=144.2
Q ss_pred CceEEEEEEECC-CCcEEEEEEEEcCCCC-----CCCCccEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEEccC
Q 004866 462 FYSCEQYDVPSH-DGISVPLTIIYSPKYK-----KENQNPGLLHGHGAYGELLDKRWRS---ELKSLLDRGWVVAFADVR 532 (726)
Q Consensus 462 ~~~~~~~~~~s~-dG~~i~~~l~~p~~~~-----~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~R 532 (726)
..+..++++.|. -|.++++.|+.|++.. +++++|+|+++||..+.. ..|.. ......+.|.+|+.++.-
T Consensus 11 ~G~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~--~~w~~~~~~~~~~~~~~~~vv~~~~~ 88 (299)
T d1pv1a_ 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTP--DNASEKAFWQFQADKYGFAIVFPDTS 88 (299)
T ss_dssp TEEEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCH--HHHHHHSCHHHHHHHHTCEEEECCSS
T ss_pred CcEEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCH--HHHHHhhhHHHHHHHcCCceecCCCc
Confidence 456778888875 5789999999999752 456799999999965532 33432 224445579999998743
Q ss_pred CCC-------------CCCCcccccccc--cCCCCcHHHHHH--HHHHHHHc-------CCCCCCcEEEEEecccHHHHH
Q 004866 533 GGG-------------GGGKKWHHDGRR--TKKLNSIKDFIS--CARFLIEK-------EIVKEHKLAGWGYSAGGLLVA 588 (726)
Q Consensus 533 G~g-------------~~g~~~~~~~~~--~~~~~~~~D~~~--~~~~l~~~-------~~~d~~ri~i~G~S~GG~l~~ 588 (726)
... +.+..|+..... ..+...++|++. .+.++.++ ...++++.+|+|+||||+.|+
T Consensus 89 p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl 168 (299)
T d1pv1a_ 89 PRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAI 168 (299)
T ss_dssp CCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHH
T ss_pred ccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHH
Confidence 210 111222222110 011223455432 23333332 122446899999999999999
Q ss_pred HHHHc--CCCceeEEEEeCCcccccccccCCCCCCChhhhc-ccCCCCChhHHHHHHhcCccccccc--CCCCCeEEEEe
Q 004866 589 AAINC--CPDLFRAVVLEVPFLDATNTLLYPILPLIAADYE-EFGYPGDIDDFHAIRNYSPYDNIQK--DVLYPAVLVTS 663 (726)
Q Consensus 589 ~~~~~--~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~i~~--~~~~P~lli~g 663 (726)
.++.+ +|++|.++++.+|+.++.... ....... .+|... ..+.+++|...+++ ....|.+++.+
T Consensus 169 ~~al~~~~p~~f~~~~s~s~~~~~~~~~------~~~~~~~~~~g~~~-----~~~~~~~~~~l~~~~~~~~~~~i~~~~ 237 (299)
T d1pv1a_ 169 CGYLKGYSGKRYKSCSAFAPIVNPSNVP------WGQKAFKGYLGEEK-----AQWEAYDPCLLIKNIRHVGDDRILIHV 237 (299)
T ss_dssp HHHHHTGGGTCCSEEEEESCCCCSTTSH------HHHHHHHHHSCC---------CGGGCHHHHGGGSCCCTTCCEEEEC
T ss_pred HHHHHhcCCCceEEEeeccCcCCccccc------chhhhhhhhcccch-----hhhhhcCHHHHHHHhhccCCcceeEec
Confidence 98864 589999999999988754311 0011111 133322 12334455543322 13456677765
Q ss_pred cC-CCCcChH-HHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCCchhhHHHH-HHHHHHHHHHhhc
Q 004866 664 SF-NTRFGVW-EAAKWVARVRESTIYDPKRPILL--NLTTDIVEENRYLQCKE-SALETAFLIKMME 725 (726)
Q Consensus 664 ~~-D~~V~~~-~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~~~~~~~~~-~~~~~~fl~~~l~ 725 (726)
|. |...+.. .+..|.+++++++.+ .++.+ .++.||. ...|+. ..+.+.|+.++||
T Consensus 238 G~~D~~~~~~~~~~~f~~~~~~~g~~---~~~~~~~~~G~~Hs----w~yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 238 GDSDPFLEEHLKPELLLEAVKATSWQ---DYVEIKKVHGFDHS----YYFVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTTCTTTTTTCCTHHHHHHHTTSTTT---TSEEEECCTTCCSS----HHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcchhhhhcHHHHHHHHHhcCCC---cceEEEecCCCCcC----HHHHHHHHHHHHHHHHHhcC
Confidence 55 5444332 357899999998865 35555 4555796 334443 4466899999987
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.7e-12 Score=127.90 Aligned_cols=200 Identities=16% Similarity=0.099 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|.||++||.++.. ..|...+..|. +||.|+++|.||+|.+.. ....++.|+.+.+. ... .+
T Consensus 11 ~~~lvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~---------~~~~~~~d~~~~~~---~~~---~~ 72 (256)
T d1m33a_ 11 NVHLVLLHGWGLNA--EVWRCIDEELS-SHFTLHLVDLPGFGRSRG---------FGALSLADMAEAVL---QQA---PD 72 (256)
T ss_dssp SSEEEEECCTTCCG--GGGGGTHHHHH-TTSEEEEECCTTSTTCCS---------CCCCCHHHHHHHHH---TTS---CS
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEeCCCCCCccc---------cccccccccccccc---ccc---cc
Confidence 36678899976543 45777777775 689999999999987531 22345666554433 222 36
Q ss_pred cEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCC----------C---hhhhc----c--cCCCC-
Q 004866 574 KLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPL----------I---AADYE----E--FGYPG- 633 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~----------~---~~~~~----~--~g~~~- 633 (726)
++.++|+|+||.+++.++.++|++++++++..+............... . ..... . .+...
T Consensus 73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T d1m33a_ 73 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 152 (256)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred ceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccch
Confidence 889999999999999999999999999888765432211000000000 0 00000 0 00000
Q ss_pred -----------------Chh----HHHHHHhcCcccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCc
Q 004866 634 -----------------DID----DFHAIRNYSPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRP 692 (726)
Q Consensus 634 -----------------~~~----~~~~~~~~sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 692 (726)
... ..+.+...+....+++ ++.|+++|+|..|..+|++.+..+.+.+.. ..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~P~lii~G~~D~~~p~~~~~~l~~~~~~-------~~ 224 (256)
T d1m33a_ 153 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQN-VSMPFLRLYGYLDGLVPRKVVPMLDKLWPH-------SE 224 (256)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGG-CCSCEEEEEETTCSSSCGGGCC-CTTTCTT-------CE
T ss_pred hhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHh-ccCCccccccccCCCCCHHHHHHHHHHCCC-------CE
Confidence 000 1122222333344554 889999999999999998877666544432 12
Q ss_pred EEEEcCCCCCCCchhhHHHHHH-HHHHHHH
Q 004866 693 ILLNLTTDIVEENRYLQCKESA-LETAFLI 721 (726)
Q Consensus 693 ~~~~~~~gH~~~~~~~~~~~~~-~~~~fl~ 721 (726)
+.+++++||...- +.-++.+ ...+||.
T Consensus 225 ~~~i~~~gH~~~~--e~p~~~~~~l~~fl~ 252 (256)
T d1m33a_ 225 SYIFAKAAHAPFI--SHPAEFCHLLVALKQ 252 (256)
T ss_dssp EEEETTCCSCHHH--HSHHHHHHHHHHHHT
T ss_pred EEEECCCCCchHH--HCHHHHHHHHHHHHH
Confidence 3336899996321 2223333 3456654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6.4e-11 Score=127.34 Aligned_cols=279 Identities=11% Similarity=0.112 Sum_probs=152.9
Q ss_pred CCcEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCC----CcEEEEEEEECCCCceecccc----ccccceeEE
Q 004866 103 KIEQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKD----NDYFTLSVRNLNSGALCSKPQ----AVRVSNIAW 174 (726)
Q Consensus 103 ~~~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g----~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~W 174 (726)
+.+++|++...+... ....+.|||||++|+|..+... +....++++|+++|+..++.. ......+.|
T Consensus 47 ~~~~~l~~~~~~~~~-----~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~w 121 (465)
T d1xfda1 47 NTSTVLIEGKKIESL-----RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGW 121 (465)
T ss_dssp CCCEEEECTTTTTTT-----TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCB
T ss_pred CCEEEEEcCcccccc-----ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeee
Confidence 456888887665432 1235679999999999876432 112368999999998776643 223456899
Q ss_pred ecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCc----------------eEEEEEEcCCCcEEEEEEcCCC
Q 004866 175 AKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNEN----------------VYVNIRHTKDFHFVCVHTFSTT 238 (726)
Q Consensus 175 spDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~----------------~~~~~~~s~Dg~~l~~~~~~~~ 238 (726)
||||+.|+|++. ..||..+..++...+++....... ....+.|||||++|+|...+.+
T Consensus 122 SPDG~~iafv~~------~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s 195 (465)
T d1xfda1 122 GPKGQQLIFIFE------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (465)
T ss_dssp CSSTTCEEEEET------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred ccCCceEEEEec------ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccc
Confidence 999999999852 378888876655444444322211 1135679999999999752211
Q ss_pred -------------------------------ceEEEEEeCCCCCCCeEEeeccC--CceE----EeeeecCCEEEEEecC
Q 004866 239 -------------------------------SSKVFLINAADPFSGLTLIWECE--GLAH----CIVEHHEGFLYLFTDA 281 (726)
Q Consensus 239 -------------------------------~~~l~~~d~~~~~~~~~~l~~~~--~~~~----~~~~~~g~~l~~~t~~ 281 (726)
...|+++|++++......+.... .... ..|.++++.+++..|+
T Consensus 196 ~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR 275 (465)
T d1xfda1 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR 275 (465)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred ccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc
Confidence 12578888876432222111111 1111 2345666555555565
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceE------EEEeeeCCEEEEE--EEeCCeeEEEEEecCCCCCCc
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVV------EDVDFCKTHMALI--LREGRTYRLCSVSLPLPAGKG 353 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l------~~~~~~~~~lv~~--~~~~g~~~l~~~~l~~~~~~~ 353 (726)
... ...|+.++.. .+..+.++.+..+.-+ ..+...++.+++. ...+|...++.+.+......
T Consensus 276 ~q~-----~~~i~~~d~~----tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~- 345 (465)
T d1xfda1 276 AQN-----VSILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN- 345 (465)
T ss_dssp TSC-----EEEEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC-
T ss_pred ccc-----cceEEEEcCC----CCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEecccccc-
Confidence 432 3678888876 2344544433222111 1233334555443 33466667776654321100
Q ss_pred ceeecccccccccCCC-ceeeeecCCCCcCCCcEEEEEEccCCCCc--eEEEEECCCCe
Q 004866 354 VVHLKELHPHFLPLPK-YVSQIVPGPNYDYYSSTMRFAISSPVMPD--AVVDYDLSYGK 409 (726)
Q Consensus 354 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~--~~~~~d~~~~~ 409 (726)
........+.-.. .+..+. ..+.+++.|.|+.+ ...|. .+|++++.++.
T Consensus 346 ---~~~~~~~~LT~G~w~V~~i~---~~d~~~~~vyF~a~-~~~p~~~hly~v~l~g~~ 397 (465)
T d1xfda1 346 ---SSNDNIQSITSGDWDVTKIL---AYDEKGNKIYFLST-EDLPRRRQLYSANTVGNF 397 (465)
T ss_dssp ---SSSCCCCBSCCSSSCEEEEE---EEETTTTEEEEEES-SSCTTCCEEEEECSSTTC
T ss_pred ---CCCceeEEeccCCceEEEEE---EEcCCCCEEEEEEe-CCCCCceEEEEEECCCCC
Confidence 0000011121111 122222 23567778877654 45565 58888887654
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.32 E-value=2.4e-11 Score=118.58 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
.+.|+||++||.++.. ..|...+..|++.||.|+++|+||+|.+..... ....+...+...+.......
T Consensus 14 ~~~P~ivllHG~~~~~--~~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~---------~~~~~~~~~~~~~~~~~~~~ 82 (264)
T d1r3da_ 14 ARTPLVVLVHGLLGSG--ADWQPVLSHLARTQCAALTLDLPGHGTNPERHC---------DNFAEAVEMIEQTVQAHVTS 82 (264)
T ss_dssp TTBCEEEEECCTTCCG--GGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCT
T ss_pred CCCCeEEEeCCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccccc---------cccchhhhhhhhcccccccc
Confidence 4568999999977643 568888899999999999999999996532211 11222222223333333345
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
..++.++|||+||.+++.++.++|+....++...
T Consensus 83 ~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~ 116 (264)
T d1r3da_ 83 EVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAI 116 (264)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEE
T ss_pred cCceeeeeecchHHHHHHHHHhCchhcccccccc
Confidence 6799999999999999999999999877776543
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.26 E-value=3e-11 Score=120.52 Aligned_cols=120 Identities=12% Similarity=-0.019 Sum_probs=82.0
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCC
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLN 552 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 552 (726)
-||.+|++... ++.|.||++||.++.. ..|...+..|+ ++|.|+++|.||+|.+...-. ......
T Consensus 15 ~~g~~i~y~~~--------G~g~~vvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~~----~~~~~~ 79 (298)
T d1mj5a_ 15 IKGRRMAYIDE--------GTGDPILFQHGNPTSS--YLWRNIMPHCA-GLGRLIACDLIGMGDSDKLDP----SGPERY 79 (298)
T ss_dssp ETTEEEEEEEE--------SCSSEEEEECCTTCCG--GGGTTTGGGGT-TSSEEEEECCTTSTTSCCCSS----CSTTSS
T ss_pred ECCEEEEEEEE--------cCCCcEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEEeCCCCCCCCCCcc----cccccc
Confidence 38988885431 2347889999987643 45666666664 578999999999987643211 111122
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 553 SIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 553 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
...+..+.+..++.+. ...+++.++|||+||.+++.++.++|++++++++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 80 AYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp CHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred ccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 4445554444444322 234689999999999999999999999999988776544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.24 E-value=6.9e-10 Score=110.11 Aligned_cols=196 Identities=10% Similarity=0.001 Sum_probs=119.8
Q ss_pred eeE--CCeEEEEEecCCcceEEEEEEecCCccccccCCCCCCCcccCCCCCCcEEEeecccccccCCceEEeeceeeCCC
Q 004866 55 LRW--GPWLYYRRVEEGKQYLVLCRRLVSLNEEFISHKSPAAGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEVSPD 132 (726)
Q Consensus 55 ~~~--g~~~yy~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~~SPD 132 (726)
+|+ |+++.|++. | .+|+..... +..+.|.+. .+ ....++||||
T Consensus 7 sPdi~G~~v~f~~~--~----dl~~~d~~~--------------------g~~~~Lt~~------~~---~~~~p~~SPD 51 (281)
T d1k32a2 7 NPDIHGDRIIFVCC--D----DLWEHDLKS--------------------GSTRKIVSN------LG---VINNARFFPD 51 (281)
T ss_dssp EEEEETTEEEEEET--T----EEEEEETTT--------------------CCEEEEECS------SS---EEEEEEECTT
T ss_pred CCCCCCCEEEEEeC--C----cEEEEECCC--------------------CCEEEEecC------CC---cccCEEECCC
Confidence 567 999999854 3 377766532 334444332 12 4567899999
Q ss_pred CCEEEEEEeCCCC-cEEEEEEEECCCCceecccccc--------ccceeEEecCCCEEEEEEecCCC-CCceEEEEEcCC
Q 004866 133 HKFLAYTMYDKDN-DYFTLSVRNLNSGALCSKPQAV--------RVSNIAWAKDGQALIYVVTDQNK-RPYQIYCSIIGS 202 (726)
Q Consensus 133 G~~la~~~~~~g~-e~~~l~v~dl~tg~~~~~~~~~--------~~~~~~WspDg~~l~y~~~~~~~-~~~~l~~~~l~t 202 (726)
|++|||+....+. ...+|+++++.+|+..+++... ....+.|+|||+.|+|+...... ....++..+..+
T Consensus 52 G~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~ 131 (281)
T d1k32a2 52 GRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG 131 (281)
T ss_dssp SSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGG
T ss_pred CCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCC
Confidence 9999999876654 3578999999999988875421 23467899999999998543221 112233333221
Q ss_pred CC---------c-------eeEEeee-------------------------------cCCceEEEEEEcCCCcEEEEEEc
Q 004866 203 TD---------E-------DALLLEE-------------------------------SNENVYVNIRHTKDFHFVCVHTF 235 (726)
Q Consensus 203 ~~---------~-------~~lv~~~-------------------------------~d~~~~~~~~~s~Dg~~l~~~~~ 235 (726)
.. . ...++.. ........+.+++ ..+++...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 209 (281)
T d1k32a2 132 INFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--HRIYFITD 209 (281)
T ss_dssp TEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--TEEEEEEC
T ss_pred ceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec--cccceecc
Confidence 10 0 0000000 0000001233443 35666666
Q ss_pred CCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 236 STTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 236 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.....+||++|+++ +..+.++.........+++||+.|+|..+ ..|+.++++
T Consensus 210 ~~~~~~l~~~d~~g--~~~~~lt~~~~~~~~~~SpDG~~I~f~~~----------~~l~~~d~~ 261 (281)
T d1k32a2 210 IDGFGQIYSTDLDG--KDLRKHTSFTDYYPRHLNTDGRRILFSKG----------GSIYIFNPD 261 (281)
T ss_dssp TTSSCEEEEEETTS--CSCEECCCCCSSCEEEEEESSSCEEEEET----------TEEEEECTT
T ss_pred cccccceEEEeCCC--CceEEeecCCCcccccCcCCCCEEEEEeC----------CEEEEEECC
Confidence 66678999999988 45677776554444467899999988543 248888876
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.22 E-value=1.1e-11 Score=124.64 Aligned_cols=128 Identities=13% Similarity=-0.013 Sum_probs=81.3
Q ss_pred CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCC--ChhHHHHHHhcCc
Q 004866 569 IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPG--DIDDFHAIRNYSP 646 (726)
Q Consensus 569 ~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~sp 646 (726)
-+||+||+|+|+|+||+|++.++..+|++|+++++.+....+... .......... .+.+. .+.........+.
T Consensus 7 ~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 81 (318)
T d2d81a1 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA---RNQYYTSCMY--NGYPSITTPTANMKSWSGNQ 81 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT---SSSCGGGGST--TCCCCCHHHHHHHHHHBTTT
T ss_pred CCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhh---cccchHHHhh--cCCCCCcChhHHHHHHhhcC
Confidence 379999999999999999999999999999855443211111100 0011110000 11111 1222233333444
Q ss_pred ccccccCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEE--EcCCCCCCC
Q 004866 647 YDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILL--NLTTDIVEE 704 (726)
Q Consensus 647 ~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~gH~~~ 704 (726)
+..+......|++|+||..|.+||+.++.+++++|++.+.. ..+.+ .+++||++.
T Consensus 82 i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~---~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 82 IASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNS---ANVSYVTTTGAVHTFP 138 (318)
T ss_dssp BCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCG---GGEEEEEETTCCSSEE
T ss_pred CcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCC---CceEEEEeCCCCCCCC
Confidence 44444335678899999999999999999999999987643 34544 789999864
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.15 E-value=1.1e-12 Score=133.54 Aligned_cols=228 Identities=10% Similarity=0.003 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCCCCccEEEEEcCCCCCCCCc-----cchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcH
Q 004866 480 LTIIYSPKYKKENQNPGLLHGHGAYGELLDK-----RWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSI 554 (726)
Q Consensus 480 ~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~-----~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 554 (726)
+..+.|.+ .++.| ||++||++...... .+...++.|+++||.|+++|+||+|.++........
T Consensus 48 v~~~~p~~---~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~-------- 115 (318)
T d1qlwa_ 48 VRYQIPQR---AKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINA-------- 115 (318)
T ss_dssp EEEEEETT---CCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHH--------
T ss_pred EEEECCCC---CCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCH--------
Confidence 33445643 24567 55689987754211 123457899999999999999999998765332111
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC-ceeEEEEeCCcccccccccCCCCCCC--hhhhcccC-
Q 004866 555 KDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVPFLDATNTLLYPILPLI--AADYEEFG- 630 (726)
Q Consensus 555 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~~d~~~~~~~~~~~~~--~~~~~~~g- 630 (726)
.+....+..++..-.....++++.|+|+||.++..++...+. ....+++..++............... .......+
T Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (318)
T d1qlwa_ 116 VKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKLDG 195 (318)
T ss_dssp HHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHhhhcc
Confidence 111111111111112234567788999999887776654432 22222222222221111000000000 00000000
Q ss_pred ------CCCChhHHHHH----------------HhcCcccccccCCCCCeEEEEecCCCCcCh-----HHHHHHHHHHHh
Q 004866 631 ------YPGDIDDFHAI----------------RNYSPYDNIQKDVLYPAVLVTSSFNTRFGV-----WEAAKWVARVRE 683 (726)
Q Consensus 631 ------~~~~~~~~~~~----------------~~~sp~~~i~~~~~~P~lli~g~~D~~V~~-----~~~~~~~~~L~~ 683 (726)
..........- ...++...... ++.|+|+++|+.|.+||. .++..++++|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~~l~~ 274 (318)
T d1qlwa_ 196 TVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPL-TSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNA 274 (318)
T ss_dssp EEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGG-TTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhh-ccCCEEEEecCcCcccChhhhHHHHHHHHHHHHHH
Confidence 00000000000 01133444454 789999999999999994 566788899999
Q ss_pred cCCCCCCCcEEEEc-----CCCCCCCchhhHHHHHHHHHHHHHHh
Q 004866 684 STIYDPKRPILLNL-----TTDIVEENRYLQCKESALETAFLIKM 723 (726)
Q Consensus 684 ~~~~~~~~~~~~~~-----~~gH~~~~~~~~~~~~~~~~~fl~~~ 723 (726)
++.+ ..++..+ ++||+.....+..+....+.+||.++
T Consensus 275 ~g~~---~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 275 AGGK---GQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp TTCC---EEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred hCCC---cEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 8854 1222234 56797544233445556678999986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.08 E-value=1.6e-09 Score=111.13 Aligned_cols=138 Identities=11% Similarity=0.132 Sum_probs=98.0
Q ss_pred eeeCC-CCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 127 SEVSP-DHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 127 ~~~SP-DG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
..||| ||++||+.. +| +|+++|+++|+.+++.....+..++|||||+.|+++..+. ...|+++++.++..
T Consensus 8 ~~fSP~dG~~~a~~~--~g----~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~---g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS--RG----QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE---GDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEECGGGCEEEEE--TT----EEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETT---EEEEEEEETTTCCE
T ss_pred ccccCCCCCEEEEEE--CC----eEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCC---CCEEEEEECCCCcE
Confidence 35899 999999985 24 5999999999888876566778899999999999986543 23588899987653
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-cCC-ceEEeeeecCCEEEEEecC
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-CEG-LAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~-~~~~~~~~~g~~l~~~t~~ 281 (726)
.+ +. ... .....+.|||||++|+..... ..++++++.++ ....+.. ... .....++++|+.|++....
T Consensus 79 ~~-~~-~~~-~~v~~~~~spdg~~l~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~la~~~~~ 148 (360)
T d1k32a3 79 EK-FE-ENL-GNVFAMGVDRNGKFAVVANDR---FEIMTVDLETG--KPTVIERSREAMITDFTISDNSRFIAYGFPL 148 (360)
T ss_dssp EE-CC-CCC-CSEEEEEECTTSSEEEEEETT---SEEEEEETTTC--CEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred EE-ee-CCC-ceEEeeeecccccccceeccc---ccccccccccc--ceeeeeecccccccchhhccceeeeeeeccc
Confidence 22 21 122 223467899999999877664 46888998873 3333332 222 2335678999998887654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.96 E-value=9.2e-09 Score=105.22 Aligned_cols=148 Identities=7% Similarity=0.021 Sum_probs=104.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
.+..++|||||++|+++....| ..|+++|+++|+...+.. ...+..++|+|||+.|++...+ ..++.+++.
T Consensus 44 ~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~-----~~~~~~~~~ 115 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLE 115 (360)
T ss_dssp CEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccc-----ccccccccc
Confidence 4667899999999999876544 359999999998876654 4456789999999999987532 478888987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCC-------ceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTT-------SSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEG 273 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~-------~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~ 273 (726)
++....++ ..... ....++|||||++|++...... ...++++|+.+ ++...+..... .....++++|+
T Consensus 116 ~~~~~~~~-~~~~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~--~~~~~~~~~~~~~~~~~~spdg~ 191 (360)
T d1k32a3 116 TGKPTVIE-RSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RKIFAATTENSHDYAPAFDADSK 191 (360)
T ss_dssp TCCEEEEE-ECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TEEEECSCSSSBEEEEEECTTSC
T ss_pred ccceeeee-ecccc-cccchhhccceeeeeeeccccccceeeccccceeeecccc--CceeeecccccccccccccCCCC
Confidence 76533332 22222 2235789999999998765432 35688999987 34444443332 23456789999
Q ss_pred EEEEEecCc
Q 004866 274 FLYLFTDAA 282 (726)
Q Consensus 274 ~l~~~t~~~ 282 (726)
.|++.++..
T Consensus 192 ~l~~~s~~~ 200 (360)
T d1k32a3 192 NLYYLSYRS 200 (360)
T ss_dssp EEEEEESCC
T ss_pred EEEEEeCCC
Confidence 999887643
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.94 E-value=5.2e-07 Score=89.17 Aligned_cols=241 Identities=10% Similarity=-0.009 Sum_probs=138.6
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
.+++||||++|+.+....+ .|.++|+++++.+.... ......+.|++|++.++.+... ...++.+++.++.
T Consensus 36 ~va~spdG~~l~v~~~~~~----~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 36 GAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTSNT 107 (301)
T ss_dssp EEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEECCCC----EEEEEECCCCceeeeeeccccccccccccccccccccccc----cceeeecccccce
Confidence 4689999999976643333 59999999998765432 3345678999999988876433 2467777877654
Q ss_pred ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCccc
Q 004866 205 EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKE 284 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~ 284 (726)
....+ .... ....+.++|||+++++..... ..+++.+..+.. ....+..........++++++.+++......
T Consensus 108 ~~~~~-~~~~--~~~~~~~~~dg~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 180 (301)
T d1l0qa2 108 VAGTV-KTGK--SPLGLALSPDGKKLYVTNNGD--KTVSVINTVTKA-VINTVSVGRSPKGIAVTPDGTKVYVANFDSM- 180 (301)
T ss_dssp EEEEE-ECSS--SEEEEEECTTSSEEEEEETTT--TEEEEEETTTTE-EEEEEECCSSEEEEEECTTSSEEEEEETTTT-
T ss_pred eeeec-cccc--cceEEEeecCCCeeeeeeccc--cceeeeeccccc-eeeecccCCCceEEEeeccccceeeeccccc-
Confidence 22222 2222 223567899999998776543 456777776631 1222222222233445677887776654322
Q ss_pred CCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEE--EeeeCCEEEEEEEeCCeeEEEEEecCCCCCCcceeeccccc
Q 004866 285 GQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVED--VDFCKTHMALILREGRTYRLCSVSLPLPAGKGVVHLKELHP 362 (726)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~ 362 (726)
.+...+.. .......+... ....+ +...++.+++.........|+++|+.+++ .+
T Consensus 181 -------~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-----~~----- 237 (301)
T d1l0qa2 181 -------SISVIDTV----TNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-----IT----- 237 (301)
T ss_dssp -------EEEEEETT----TTEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-----EE-----
T ss_pred -------cccccccc----ceeeeeccccc--CCcceeeccccccccccccccceeeeeeeeecCCCe-----EE-----
Confidence 12333322 11222222221 22233 44445777777666556688899976532 11
Q ss_pred ccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 363 HFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 363 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
..++.......+ .+++|++.+.++-+.- ..|..+|+++++..
T Consensus 238 ~~~~~~~~~~~v----a~spdg~~l~va~~~~---~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 238 ARIPVGPDPAGI----AVTPDGKKVYVALSFC---NTVSVIDTATNTIT 279 (301)
T ss_dssp EEEECCSSEEEE----EECTTSSEEEEEETTT---TEEEEEETTTTEEE
T ss_pred EEEcCCCCEEEE----EEeCCCCEEEEEECCC---CeEEEEECCCCeEE
Confidence 123333333322 3467888775554332 48999999998753
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.91 E-value=6.8e-09 Score=95.75 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=100.8
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVKEH 573 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 573 (726)
.|+ |++||..+. ...|......|.++||.|+.++.+|.+.....- ....+++.+.++.+.++ ...+
T Consensus 3 ~PV-v~vHG~~~~--~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~i~~~~~~--~~~~ 68 (179)
T d1ispa_ 3 NPV-VMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTN---------YNNGPVLSRFVQKVLDE--TGAK 68 (179)
T ss_dssp CCE-EEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCH---------HHHHHHHHHHHHHHHHH--HCCS
T ss_pred CCE-EEECCCCCC--HHHHHHHHHHHHHcCCeEEEEecCCcccccccc---------chhhhhHHHHHHHHHHh--cCCc
Confidence 365 568997553 356888899999999999999999876542211 12345666666666654 2347
Q ss_pred cEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCcccccccccCCCCCCChhhhcccCCCCChhHHHHHHhcCcccccc
Q 004866 574 KLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFLDATNTLLYPILPLIAADYEEFGYPGDIDDFHAIRNYSPYDNIQ 651 (726)
Q Consensus 574 ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~i~ 651 (726)
++.++||||||.++..++.++ |++++.+|+.++....... .. .+. ..
T Consensus 69 ~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~-------------~~--l~~----------------~~ 117 (179)
T d1ispa_ 69 KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG-------------KA--LPG----------------TD 117 (179)
T ss_dssp CEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS-------------BC--CCC----------------SC
T ss_pred eEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchh-------------hh--cCC----------------cc
Confidence 899999999999999988776 6788999887764321100 00 010 00
Q ss_pred cCCCCCeEEEEecCCCCcChHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCCCC
Q 004866 652 KDVLYPAVLVTSSFNTRFGVWEAAKWVARVRESTIYDPKRPILLNLTTDIVEE 704 (726)
Q Consensus 652 ~~~~~P~lli~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 704 (726)
.....|.+.+++..|..|++..+. + .+ .+.+. .++.||...
T Consensus 118 ~~~~~~~~~i~~~~D~~v~~~~~~-----l--~~----~~~~~-~~~~~H~~l 158 (179)
T d1ispa_ 118 PNQKILYTSIYSSADMIVMNYLSR-----L--DG----ARNVQ-IHGVGHIGL 158 (179)
T ss_dssp TTCCCEEEEEEETTCSSSCHHHHC-----C--BT----SEEEE-ESSCCTGGG
T ss_pred cccCceEEEEEecCCcccCchhhc-----C--CC----ceEEE-ECCCCchhh
Confidence 113567888999999999986541 2 12 12333 588999643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.85 E-value=1.3e-07 Score=101.19 Aligned_cols=110 Identities=8% Similarity=-0.037 Sum_probs=64.6
Q ss_pred EEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEE
Q 004866 231 CVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESV 310 (726)
Q Consensus 231 ~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 310 (726)
++.+...+..+||+++..+ +..+.++.....+...+..+++.+||.++..+.. .....||+++++ .. ...+.+
T Consensus 335 ~~~s~~dg~~~ly~~~~~g--~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~--p~~~~ly~v~~~-g~--~~~~~l 407 (470)
T d2bgra1 335 KIISNEEGYRHICYFQIDK--KDCTFITKGTWEVIGIEALTSDYLYYISNEYKGM--PGGRNLYKIQLS-DY--TKVTCL 407 (470)
T ss_dssp EEEECTTSCEEEEEEETTC--SCCEESCCSSSCEEEEEEECSSEEEEEESCGGGC--TTCBEEEEEETT-CT--TCEEES
T ss_pred EEEeccCcCceeEEEeccC--CceeeeccCCeeEEEEEEECCCEEEEEEecCCCC--cceEEEEEEECC-CC--CceeEe
Confidence 3444444456677777765 4455665554444444567888999988754311 124579999987 32 222322
Q ss_pred ee----cCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecC
Q 004866 311 FI----DDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 311 ~~----~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
.. +.....-..+++.+++++..+...+.+.+.+++..
T Consensus 408 t~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~ 448 (470)
T d2bgra1 408 SCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (470)
T ss_dssp STTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred cccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECC
Confidence 11 12223234566777888888887777766666654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.83 E-value=9.1e-07 Score=90.78 Aligned_cols=125 Identities=12% Similarity=-0.031 Sum_probs=78.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCC-----CCCceEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN-----KRPYQIYCS 198 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~-----~~~~~l~~~ 198 (726)
....++||||++++++.....+...+++++|.++|+.+..........++|||||+.|++...... .+...|..+
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~ 102 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEE
Confidence 345579999999977643333334579999999999876433334447999999999999865432 133568888
Q ss_pred EcCCCCceeEEeeecCCce-----EEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 199 IIGSTDEDALLLEESNENV-----YVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~-----~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
|+.+++....+........ ...+.+++||+++++..... ...+.+++..+
T Consensus 103 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~~~~~~~~~~ 157 (373)
T d2madh_ 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-GPAVGLVVQGG 157 (373)
T ss_pred ECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC-CCceEEeeccC
Confidence 9887752222211111111 12467899999987765432 23445555544
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=5.3e-09 Score=101.99 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=75.9
Q ss_pred ccEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 494 NPGLLHGHGAYGELLDKRWRSELKSLLDR--GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 494 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
.| ||++||.++.. ..|...+..|.+. ||.|+++|.||+|.+... ....++++.+.+..++++. .
T Consensus 3 ~P-vvllHG~~~~~--~~~~~~~~~l~~~~~~~~v~~~d~~G~g~S~~~---------~~~~~~~~~~~l~~~l~~l--~ 68 (268)
T d1pjaa_ 3 KP-VIVVHGLFDSS--YSFRHLLEYINETHPGTVVTVLDLFDGRESLRP---------LWEQVQGFREAVVPIMAKA--P 68 (268)
T ss_dssp CC-EEEECCTTCCG--GGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSC---------HHHHHHHHHHHHHHHHHHC--T
T ss_pred CC-EEEECCCCCCH--HHHHHHHHHHHhhCCCeEEEEeCCCCCCCCCCc---------cccCHHHHHHHHHHHHhcc--C
Confidence 45 45689986644 5788888888874 899999999999875321 1235677777777666553 3
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCC-ceeEEEEeCC
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEVP 606 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p 606 (726)
+++.++||||||.++..++.++|+ +++.+|+.++
T Consensus 69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred -CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 799999999999999999999998 5888887765
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=1e-08 Score=98.30 Aligned_cols=82 Identities=17% Similarity=0.095 Sum_probs=62.7
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIVK 571 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 571 (726)
++.|+||++||..+.. ..|......| .+|.|..+|++|.++ ..+|+.+.+..+. .
T Consensus 15 ~~~~~l~~lhg~~g~~--~~~~~la~~L--~~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~-----~ 69 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYG--LMYQNLSSRL--PSYKLCAFDFIEEED----------------RLDRYADLIQKLQ-----P 69 (230)
T ss_dssp TCSEEEEEECCTTCCG--GGGHHHHHHC--TTEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----C
T ss_pred CCCCeEEEEcCCCCCH--HHHHHHHHHC--CCCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----C
Confidence 3458999999987754 5677777777 479999999998753 4667766665543 2
Q ss_pred CCcEEEEEecccHHHHHHHHHcCCCce
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCCPDLF 598 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~p~~f 598 (726)
..++.|+||||||.++..++.++|++.
T Consensus 70 ~~~~~lvGhS~GG~vA~~~A~~~~~~~ 96 (230)
T d1jmkc_ 70 EGPLTLFGYSAGCSLAFEAAKKLEGQG 96 (230)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeeccChHHHHHHHHhhhhhC
Confidence 367999999999999999988766543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.76 E-value=8e-07 Score=90.38 Aligned_cols=121 Identities=13% Similarity=-0.039 Sum_probs=76.9
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCC-----CCCceEEEEEcCC
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQN-----KRPYQIYCSIIGS 202 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~-----~~~~~l~~~~l~t 202 (726)
++||||+++++.....+.-..+++|+|+++|+.+.....+....++|||||+.||++..... .+...|+++|+.+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t 87 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 87 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence 47999999955432333445679999999998776433444557899999999988753211 1234688899888
Q ss_pred CCceeEEeeecCCceE-----EEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 203 TDEDALLLEESNENVY-----VNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~-----~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
++....+......... ..+.+|+||+++++.... ....+++++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-~~~~~~~~~~~~ 138 (355)
T d2bbkh_ 88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDLEG 138 (355)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-SSCEEEEEETTT
T ss_pred CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC-CCceeeeeecCC
Confidence 7622222211111110 135789999999876543 335567777766
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=8.4e-09 Score=112.82 Aligned_cols=133 Identities=19% Similarity=0.131 Sum_probs=91.3
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKK 550 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 550 (726)
+.|-..|. |+.|++...+.+.|++||+|||.-. .....+. ....++.++.+|+.+|||-+- +|.-.. ......+
T Consensus 93 sEDCL~Ln--I~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~-~~~~~~~~~vIvVt~nYRLg~-~GFl~~-~~~~~~g 167 (532)
T d2h7ca1 93 SEDCLYLN--IYTPADLTKKNRLPVMVWIHGGGLMVGAASTYD-GLALAAHENVVVVTIQYRLGI-WGFFST-GDEHSRG 167 (532)
T ss_dssp ESCCCEEE--EEECSCTTSCCCEEEEEEECCSTTTSCCSTTSC-CHHHHHHHTCEEEEECCCCHH-HHHCCC-SSTTCCC
T ss_pred CCcCCEEE--EEECCCCCCCCCcEEEEEEeCCcccccccccCC-chhhhhcCceEEEEEeeccCC-Cccccc-ccccccc
Confidence 56765554 6778776667789999999996332 2222222 223456789999999999542 111000 1111223
Q ss_pred CCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCccc
Q 004866 551 LNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLD 609 (726)
Q Consensus 551 ~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d 609 (726)
...+.|.+.|++|+.+.-- =||++|.|+|+|+||..+..++.. ...+|+.+|+.++...
T Consensus 168 N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~~ 231 (532)
T d2h7ca1 168 NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 231 (532)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhccccc
Confidence 4579999999999987511 299999999999999998887763 2459999999998653
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.70 E-value=2e-08 Score=100.30 Aligned_cols=166 Identities=12% Similarity=0.024 Sum_probs=99.8
Q ss_pred CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
..+.| ||++||.........|......|.++||.|+.+|+||.|.. ......+++.+.++++.+. .
T Consensus 29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g~~-----------d~~~sae~la~~i~~v~~~--~ 94 (317)
T d1tcaa_ 29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLN-----------DTQVNTEYMVNAITALYAG--S 94 (317)
T ss_dssp SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTCS-----------CHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCCCC-----------chHhHHHHHHHHHHHHHHh--c
Confidence 34456 56789854432222345677889999999999999987632 1123567788888888765 2
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCC---ceeEEEEeCCccccccccc--CCCCCCChhhhc-ccCCCCChhHHHHHHhc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPD---LFRAVVLEVPFLDATNTLL--YPILPLIAADYE-EFGYPGDIDDFHAIRNY 644 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~~d~~~~~~--~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 644 (726)
..+||.|+||||||+++.+++.++|+ +.+.+|..+|-..-..... ............ ..+. ...+.+...
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~Gt~~a~~~~~~~~~~pa~~q~~~~s----~fl~~L~~~ 170 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSVWQQTTGS----ALTTALRNA 170 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHTTCBCHHHHHTBTTC----HHHHHHHHT
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCCCcccccchhhhhccCchhhhhcCCc----HHHHHHHhC
Confidence 34789999999999999999998885 5778887777543211100 000000000000 0111 222333332
Q ss_pred CcccccccCCCCCeEEEEecCCCCcChHHHHHHHH
Q 004866 645 SPYDNIQKDVLYPAVLVTSSFNTRFGVWEAAKWVA 679 (726)
Q Consensus 645 sp~~~i~~~~~~P~lli~g~~D~~V~~~~~~~~~~ 679 (726)
.... -..|.+.|++..|..|.+.++..+.+
T Consensus 171 ~~~~-----~~V~~t~I~s~~D~iV~P~~~~~~~~ 200 (317)
T d1tcaa_ 171 GGLT-----QIVPTTNLYSATDEIVQPQVSNSPLD 200 (317)
T ss_dssp TTTB-----CSSCEEEEECTTCSSSCCCCSSSTTS
T ss_pred CCCC-----CCCCEEEEecCCCcccCccccchhcc
Confidence 2111 23577889999998888876544433
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.70 E-value=2e-08 Score=101.68 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=78.4
Q ss_pred CCccEEEEEcCCCCCCC----CccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc
Q 004866 492 NQNPGLLHGHGAYGELL----DKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK 567 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~----~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 567 (726)
.++|+| ++||..+... ...|......|.++||.|+.+|+||.|.... .....+++.+.++.+++.
T Consensus 7 ~k~Pvv-lvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~----------~~~~~~~l~~~i~~~~~~ 75 (319)
T d1cvla_ 7 TRYPVI-LVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDG----------PNGRGEQLLAYVKQVLAA 75 (319)
T ss_dssp CSSCEE-EECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBCSSCTTS----------TTSHHHHHHHHHHHHHHH
T ss_pred CCCCEE-EECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCCCCCCCC----------CcccHHHHHHHHHHHHHH
Confidence 457865 5799665431 1236677889999999999999999875421 123467777777766654
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
.+.++|.++||||||.++..++.++|++++.+|+.++.
T Consensus 76 --~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p 113 (319)
T d1cvla_ 76 --TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113 (319)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECCC
Confidence 34589999999999999999999999999999988764
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.69 E-value=5.9e-09 Score=114.02 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=89.0
Q ss_pred ECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC-CCCCccch--HHH--HHHHHCCcEEEEEccCCCC-CCCCccccc
Q 004866 471 PSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG-ELLDKRWR--SEL--KSLLDRGWVVAFADVRGGG-GGGKKWHHD 544 (726)
Q Consensus 471 ~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~-~~~~~~~~--~~~--~~l~~~G~~v~~~d~RG~g-~~g~~~~~~ 544 (726)
.+.|-..+ -|+.|+....+++.|||||+|||.- ......|. ... ..++.++++|+.+|||-+- |+-.. ...
T Consensus 93 ~sEDCL~L--nI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~-~~~ 169 (534)
T d1llfa_ 93 QSEDCLTI--NVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAG-DDI 169 (534)
T ss_dssp BCSCCCEE--EEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCS-HHH
T ss_pred CCCcCCEE--EEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCC-ccc
Confidence 35666444 4677876666788999999999643 22222232 222 3445689999999999543 11100 000
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHc-----CC---CceeEEEEeCCc
Q 004866 545 GRRTKKLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINC-----CP---DLFRAVVLEVPF 607 (726)
Q Consensus 545 ~~~~~~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~-----~p---~~f~a~v~~~p~ 607 (726)
.....+...+.|.+.|++|+.+.-- -||+||.|+|+|+||..+.+.+.. -| .+|+.+|+++|.
T Consensus 170 ~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 170 KAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 0111233578999999999997521 399999999999999988776641 12 379999999974
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.67 E-value=1.1e-08 Score=111.18 Aligned_cols=135 Identities=17% Similarity=0.116 Sum_probs=88.7
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC-CCCCCccchHHHHHHH-HCCcEEEEEccCCCCCCCCccccc-cccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY-GELLDKRWRSELKSLL-DRGWVVAFADVRGGGGGGKKWHHD-GRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~-~~~~~~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~~~~~-~~~~ 548 (726)
+.|-..|. |+.|+....+++.||+||+|||. .......+......++ ..+.+|+.+|||-+- +|.--... ....
T Consensus 77 sEDCL~Ln--I~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~-~GFl~~~~~~~~~ 153 (517)
T d1ukca_ 77 SEDCLFIN--VFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGA-LGFLASEKVRQNG 153 (517)
T ss_dssp ESCCCEEE--EEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHH-HHHCCCHHHHHSS
T ss_pred CCcCCEEE--EEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccc-eeecCcccccccc
Confidence 45765554 67787655567889999999963 2222233433333344 467899999999532 11000000 0111
Q ss_pred CCCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHc----CCCceeEEEEeCCccc
Q 004866 549 KKLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINC----CPDLFRAVVLEVPFLD 609 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~----~p~~f~a~v~~~p~~d 609 (726)
.+...+.|.+.|++|+.+.-- -||++|.|+|+|+||..+...+.. ...+|+.+|+++|...
T Consensus 154 ~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~ 221 (517)
T d1ukca_ 154 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWP 221 (517)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCC
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeecccccc
Confidence 224578999999999997621 299999999999999998776653 2249999999998643
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.67 E-value=8.4e-09 Score=111.31 Aligned_cols=132 Identities=17% Similarity=0.102 Sum_probs=87.4
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccchHHHH-HHHHCCcEEEEEccCCCCCCCCcccccc-ccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRWRSELK-SLLDRGWVVAFADVRGGGGGGKKWHHDG-RRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~-~l~~~G~~v~~~d~RG~g~~g~~~~~~~-~~~ 548 (726)
+.|-. ...|+.|+. .+++.|||||+|||.... ....+..... .+.+.+.+|+.+|||-+- +|.-..... ...
T Consensus 78 sEDCL--~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~-~GFl~~~~~~~~~ 152 (483)
T d1qe3a_ 78 SEDCL--YVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGP-FGFLHLSSFDEAY 152 (483)
T ss_dssp CSCCC--EEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHH-HHSCCCTTTCTTS
T ss_pred CCcCC--EEEEEECCC--CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccc-hhhcccccccccc
Confidence 55654 444667864 356799999999973221 1112222223 334468999999999543 221111111 112
Q ss_pred CCCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~ 608 (726)
.+...+.|.+.|++|+.+.-- -||++|.|+|+|+||..+..++... ..+|+.+|+++|..
T Consensus 153 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 153 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 334578999999999987521 2999999999999999998887641 25999999999864
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=98.63 E-value=1.2e-07 Score=99.00 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=90.3
Q ss_pred CCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCC------cEEEEEccCCCCCCCCccccccc
Q 004866 473 HDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRG------WVVAFADVRGGGGGGKKWHHDGR 546 (726)
Q Consensus 473 ~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G------~~v~~~d~RG~g~~g~~~~~~~~ 546 (726)
-||.+||...+... .+..|.||++||.|++. -.|...+..|++.| |.|++||.||.|.+..-
T Consensus 89 i~G~~iHf~h~~~~----~~~~~pLlLlHG~P~s~--~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P------ 156 (394)
T d1qo7a_ 89 IEGLTIHFAALFSE----REDAVPIALLHGWPGSF--VEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGP------ 156 (394)
T ss_dssp ETTEEEEEEEECCS----CTTCEEEEEECCSSCCG--GGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCC------
T ss_pred ECCEEEEEEEEecc----CCCCCEEEEeccccccH--HHHHHHHHhhccccCCcccceeeecccccccCCCCCC------
Confidence 38999997444322 23457788999999865 57889999999988 99999999999976431
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCC
Q 004866 547 RTKKLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVP 606 (726)
Q Consensus 547 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 606 (726)
.......+.++.+.+..|++.- ..++..+.|+|+||.++..++..+|+..++++....
T Consensus 157 ~~~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 157 PLDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 1222346777777777777652 336789999999999999999989998888776543
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.61 E-value=8.3e-07 Score=89.83 Aligned_cols=136 Identities=19% Similarity=0.235 Sum_probs=84.2
Q ss_pred EECCCCcEEE-EEEEEcC-CCCCCCCccEEEEEcCCCCCCC------Cccc-hHHH---HHHHHCCcEEEEEccCCCCCC
Q 004866 470 VPSHDGISVP-LTIIYSP-KYKKENQNPGLLHGHGAYGELL------DKRW-RSEL---KSLLDRGWVVAFADVRGGGGG 537 (726)
Q Consensus 470 ~~s~dG~~i~-~~l~~p~-~~~~~~~~P~vl~~hGg~~~~~------~~~~-~~~~---~~l~~~G~~v~~~d~RG~g~~ 537 (726)
++-..|..|+ +.|.|.. +.-...+-++||+.|+-.+... .+.| ...+ ..|=-.-|.|+++|.-|++..
T Consensus 13 f~l~~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~g 92 (357)
T d2b61a1 13 LTLMLGGKLSYINVAYQTYGTLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKG 92 (357)
T ss_dssp EECTTSCEECSEEEEEEEESCCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSS
T ss_pred eecCCCCccCCceEEEEeecccCCCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccc
Confidence 4445666664 4444432 1111234589999998433221 1122 2221 222235699999999997632
Q ss_pred --CCccccc--c---cccCCCCcHHHHHHHHHHHHHcCCCCCCcE-EEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 538 --GKKWHHD--G---RRTKKLNSIKDFISCARFLIEKEIVKEHKL-AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 538 --g~~~~~~--~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
|..=... + .......++.|.+.+-..|+++= .-+|+ +|+|+||||+.++..+.++|++.+.+|+.++-
T Consensus 93 Ss~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~ 168 (357)
T d2b61a1 93 TTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSS 168 (357)
T ss_dssp SSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred cCCcCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccc
Confidence 1110000 0 01123468999999998888763 33677 88899999999999999999999999887764
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=2.1e-08 Score=109.87 Aligned_cols=132 Identities=17% Similarity=0.059 Sum_probs=86.8
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCC---CCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYG---ELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~---~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
+.|-.-|. |+.|.. ...++.||+||+|||-- +.....+... ...++.+.+|+.+|||-+- +|.-........
T Consensus 93 sEDCL~Ln--I~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~-~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~~ 167 (542)
T d2ha2a1 93 SEDCLYLN--VWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGR-FLAQVEGAVLVSMNYRVGT-FGFLALPGSREA 167 (542)
T ss_dssp ESCCCEEE--EEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTH-HHHHHHCCEEEEECCCCHH-HHHCCCTTCSSC
T ss_pred CCcCCEEE--EEecCC-CCCCCCcEEEEEEECccccccCcccccCch-hhhhhccceeEeeeeeccc-eeeecccccccC
Confidence 45665444 566764 34567999999999732 2222223222 2233579999999999421 110000011112
Q ss_pred CCCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCcc
Q 004866 549 KKLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFL 608 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~ 608 (726)
.+...+.|.+.|++|+.+.-- =||++|.|+|+|+||..+..++... ..+|..+|+.++..
T Consensus 168 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 168 PGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 334578999999999987511 2999999999999999999887742 25999999998854
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.58 E-value=2.7e-08 Score=108.80 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=88.3
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCC-CCccc--hHHH-HHH-HHCCcEEEEEccCCCC-CCCC--cccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGEL-LDKRW--RSEL-KSL-LDRGWVVAFADVRGGG-GGGK--KWHH 543 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~-~~~~~--~~~~-~~l-~~~G~~v~~~d~RG~g-~~g~--~~~~ 543 (726)
+.|-..+ .|+.|++...+++.|+|||+|||--.. ....+ .... ..+ +..+.+|+.+|||-+- |+-. +...
T Consensus 102 sEDCL~L--nI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~ 179 (544)
T d1thga_ 102 NEDCLYL--NVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCcCCEE--EEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc
Confidence 5566544 466788766677899999999963221 11222 2222 334 4579999999999432 1100 1011
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHc--------CCCceeEEEEeCCc
Q 004866 544 DGRRTKKLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINC--------CPDLFRAVVLEVPF 607 (726)
Q Consensus 544 ~~~~~~~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~--------~p~~f~a~v~~~p~ 607 (726)
...+...+.|.+.|++|+.+.-- =||++|.|+|+|+||.++..++.. ...+|+.+|+++|.
T Consensus 180 ---~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 180 ---EGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp ---HTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred ---cccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 11234578999999999987621 299999999999999998887763 12499999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.57 E-value=3.2e-05 Score=77.10 Aligned_cols=244 Identities=7% Similarity=-0.085 Sum_probs=129.5
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
.+++||||+.|||.. |+ .++++|+++++...... ...+..++|+|||+.|+....+ ..|.++++.+.
T Consensus 22 ~~a~~~~g~~l~~~~---~~---~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~~~~ 90 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDTTQT 90 (311)
T ss_dssp CCEECTTSSEEEEEE---TT---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEESSST
T ss_pred EEEEcCCCCEEEEEe---CC---EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccC-----ceEeeeeeecc
Confidence 457899999999974 22 38899999886654322 4567889999999988765433 36888888776
Q ss_pred C-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEEecC
Q 004866 204 D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLFTDA 281 (726)
Q Consensus 204 ~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~ 281 (726)
. .....+...... ...+.|+||+++|+...... ...+.+++++++. ....+....+.+. ..++++++.+++....
T Consensus 91 ~~~~~~~~~~~~~~-v~~v~~s~d~~~l~~~~~~~-~~~~~v~~~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~ 167 (311)
T d1nr0a1 91 THILKTTIPVFSGP-VKDISWDSESKRIAAVGEGR-ERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSD 167 (311)
T ss_dssp TCCEEEEEECSSSC-EEEEEECTTSCEEEEEECCS-SCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred ccccccccccccCc-cccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccccceeeeccccc
Confidence 5 222233322222 34688999999987765432 2234555665532 1122222223222 3456777765554433
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCCCCCCcceeeccc
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPLPAGKGVVHLKEL 360 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~ 360 (726)
++ .|...++. . ....... ......+..+.+.. +.++++...+|. +.++++..+. ....+
T Consensus 168 d~--------~i~i~d~~-~---~~~~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~--v~~~d~~~~~-----~~~~~ 227 (311)
T d1nr0a1 168 DN--------TVAIFEGP-P---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGT--IVLYNGVDGT-----KTGVF 227 (311)
T ss_dssp TS--------CEEEEETT-T---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTCC-----EEEEC
T ss_pred cc--------cccccccc-c---ccccccc-ccccccccccccCcccccccccccccc--cccccccccc-----ccccc
Confidence 32 24444554 1 1111122 12233455666543 344555555554 4556655432 01101
Q ss_pred ccccccCC---CceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 361 HPHFLPLP---KYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 361 ~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
........ ..+.++ .+++++..++ +.+.- ..+..+|..+++..
T Consensus 228 ~~~~~~~~~h~~~V~~~----~~s~~~~~l~-tgs~D---g~v~iwd~~t~~~~ 273 (311)
T d1nr0a1 228 EDDSLKNVAHSGSVFGL----TWSPDGTKIA-SASAD---KTIKIWNVATLKVE 273 (311)
T ss_dssp BCTTSSSCSSSSCEEEE----EECTTSSEEE-EEETT---SEEEEEETTTTEEE
T ss_pred ccccccccccccccccc----ccCCCCCEEE-EEeCC---CeEEEEECCCCcEE
Confidence 11111111 123332 2345666543 33322 36888999888753
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.55 E-value=7e-06 Score=84.10 Aligned_cols=121 Identities=11% Similarity=-0.080 Sum_probs=77.8
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecC-----CCCCceEEEEEcC
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQ-----NKRPYQIYCSIIG 201 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~-----~~~~~~l~~~~l~ 201 (726)
.+.+|||+...+......+...+||++|.++++.+..........++|||||+.|++..... ..+...|.++|..
T Consensus 25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~ 104 (368)
T d1mdah_ 25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence 35789999865543322222367999999999987764444455799999999999875421 1223458899988
Q ss_pred CCCceeEEeeecCC-ceE-----EEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 202 STDEDALLLEESNE-NVY-----VNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 202 t~~~~~lv~~~~d~-~~~-----~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
+.+....+ ..+.. .+. ..+.+|||||+|++..... ..++++|+.++
T Consensus 105 t~~~~~~i-~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~--~~v~~~d~~~~ 156 (368)
T d1mdah_ 105 TFLPIADI-ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--SAAAGLSVPGA 156 (368)
T ss_dssp TCCEEEEE-EETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--SCEEEEEETTT
T ss_pred CCcEeeee-cCCccceecccCCccceEECCCCCEEEEEeCCC--CeEEEEECCCC
Confidence 87622111 11111 110 1368999999998875432 46778888773
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.52 E-value=9.1e-08 Score=94.77 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=73.3
Q ss_pred CCccEEEEEcCCCCCC--CC-ccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcC
Q 004866 492 NQNPGLLHGHGAYGEL--LD-KRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKE 568 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~--~~-~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 568 (726)
.++| ||++||-.+.. .. ..|......|.++||.|+.+|++|.+. .+. ..+++.+.++.+.+.
T Consensus 6 ~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~~~~---~~~----------~a~~l~~~i~~~~~~- 70 (285)
T d1ex9a_ 6 TKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDT---SEV----------RGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSC---HHH----------HHHHHHHHHHHHHHH-
T ss_pred CCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCCCCC---cHH----------HHHHHHHHHHHHHHH-
Confidence 4688 68889955532 11 236677889999999999999998663 221 234555555555443
Q ss_pred CCCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 569 IVKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 569 ~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
...+++.++||||||+++..++.++|++++.+|..+..
T Consensus 71 -~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 23468999999999999999999999999999887653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.2e-05 Score=80.43 Aligned_cols=265 Identities=11% Similarity=0.037 Sum_probs=124.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCcee--cccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALC--SKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~--~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
+..++|||||++|+.+ ....+ .|.+++++++... .... ......++|+|||+.|+....+ ...+..+
T Consensus 39 v~~la~spDG~~L~v~-~~~d~---~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~----~~~v~~~ 110 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVG-VRPEF---RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVSVT 110 (333)
T ss_dssp CCCEEECTTSSEEEEE-ETTTT---EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEEEE
T ss_pred EeEEEEeCCCCEEEEE-ECCCC---eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC----CCceeee
Confidence 5567899999999554 33222 3667777654322 2111 2234568999999999877432 2345555
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEE----eeccCC--ceEEeeeecC
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTL----IWECEG--LAHCIVEHHE 272 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~----l~~~~~--~~~~~~~~~g 272 (726)
+..........-..........+.++||+++++....... .++.++.......... ...... .....+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~ 188 (333)
T d1ri6a_ 111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD--RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 188 (333)
T ss_dssp EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT--EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred ccccccceecccccCCCccceEEEeeecceeeeccccccc--eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence 5444321111111111111124578999999887765433 4555555442211111 111111 1223455666
Q ss_pred CEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec--C--CCceEEE--EeeeCCEEEEEEEeCCeeEEEEEec
Q 004866 273 GFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID--D--QGLVVED--VDFCKTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 273 ~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~--~--~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~~l 346 (726)
..+|....... ...++.+... .........+... . ....... +...++++++.....+...++.++.
T Consensus 189 ~~~~~~~~~~~------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 261 (333)
T d1ri6a_ 189 QYAYCVNELNS------SVDVWELKDP-HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 261 (333)
T ss_dssp SEEEEEETTTT------EEEEEESSCT-TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eeEEeeccccC------ceEEEeeccc-ccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence 66655543322 1334444332 1110011111110 0 0111222 3334566666665555555555543
Q ss_pred CCCCCCcceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEEEEEeecc
Q 004866 347 PLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWNIIQQQNM 418 (726)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~ 418 (726)
.+.. ...... ...-..|. +..+++|++.+++. .+...--.+|.+|.++|+++.+....+
T Consensus 262 ~~~~----~~~~~~-~~~~~~p~-------~~a~spDGk~l~va-~~~~~~v~v~~id~~tG~l~~~~~~~~ 320 (333)
T d1ri6a_ 262 DGSV----LSKEGF-QPTETQPR-------GFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRYAV 320 (333)
T ss_dssp TSCC----EEEEEE-EECSSSCC-------CEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCE----EEEEEE-eCCCCCee-------EEEEeCCCCEEEEE-ECCCCeEEEEEEECCCCcEEEEEeccC
Confidence 2211 001000 00001121 12346788876443 333333468888999999877665443
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.50 E-value=4.4e-08 Score=106.88 Aligned_cols=132 Identities=17% Similarity=0.125 Sum_probs=87.9
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCC---CCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCccccccccc
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAY---GELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRT 548 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 548 (726)
+.|-..|. |+.|.. ..++.|++||+|||- ++.....+.. ...+++++.+|+.+|||-+- +|.-........
T Consensus 88 sEDCL~Ln--I~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~-~~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~~ 161 (532)
T d1ea5a_ 88 SEDCLYLN--IWVPSP--RPKSTTVMVWIYGGGFYSGSSTLDVYNG-KYLAYTEEVVLVSLSYRVGA-FGFLALHGSQEA 161 (532)
T ss_dssp CSCCCEEE--EEECSS--CCSSEEEEEEECCSTTTCCCTTCGGGCT-HHHHHHHTCEEEECCCCCHH-HHHCCCTTCSSS
T ss_pred CccCCEEE--EEeCCC--CCCCCcEEEEEEcCCcccccCCccccCc-chhhcccCccEEEEeecccc-ccccccccccCC
Confidence 56665554 567764 345789999999973 2222222222 22355689999999999532 111111111122
Q ss_pred CCCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCccc
Q 004866 549 KKLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFLD 609 (726)
Q Consensus 549 ~~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d 609 (726)
.+...+.|.+.|++|+.+.-- =||++|.|+|+|+||..+..++.. ...+|..+|+.++...
T Consensus 162 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~ 227 (532)
T d1ea5a_ 162 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 227 (532)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred CCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeeccccc
Confidence 334579999999999997521 299999999999999998888764 1258999999987653
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.50 E-value=1e-07 Score=104.77 Aligned_cols=118 Identities=17% Similarity=0.107 Sum_probs=79.8
Q ss_pred CCCCccEEEEEcCCC---CCCCCccchHHHHHHHH-CCcEEEEEccCCCC-CC---CCcc-cccccccCCCCcHHHHHHH
Q 004866 490 KENQNPGLLHGHGAY---GELLDKRWRSELKSLLD-RGWVVAFADVRGGG-GG---GKKW-HHDGRRTKKLNSIKDFISC 560 (726)
Q Consensus 490 ~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g-~~---g~~~-~~~~~~~~~~~~~~D~~~~ 560 (726)
..++.|+|||+|||- |+...+.|. ...|++ .+.+|+.+|||-+- |+ +... ........+...+.|.+.|
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~--~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~A 212 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYN--ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALA 212 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGC--CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccc--hhhhhhcCCeeEEeecceeccccccccccccccccccCCCCcccchHHHHH
Confidence 357899999999973 222222232 244554 46999999999542 11 0000 0011122344578999999
Q ss_pred HHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHcC--CCceeEEEEeCCccc
Q 004866 561 ARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINCC--PDLFRAVVLEVPFLD 609 (726)
Q Consensus 561 ~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d 609 (726)
++|+.++-- =||+||.|+|+|+||..+..++... ..+|+.+|+.++...
T Consensus 213 L~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 213 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 999998621 2999999999999999998877642 358999999988654
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.50 E-value=4.7e-06 Score=84.34 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=82.6
Q ss_pred EECCCCcEEE-EEEEEcC-CCCCCCCccEEEEEcCCCCCCC----------Cccc-hHHH---HHHHHCCcEEEEEccCC
Q 004866 470 VPSHDGISVP-LTIIYSP-KYKKENQNPGLLHGHGAYGELL----------DKRW-RSEL---KSLLDRGWVVAFADVRG 533 (726)
Q Consensus 470 ~~s~dG~~i~-~~l~~p~-~~~~~~~~P~vl~~hGg~~~~~----------~~~~-~~~~---~~l~~~G~~v~~~d~RG 533 (726)
++-..|..|+ +.|-|.. +.-...+.++||+.|+-.+... .+.| ...+ ..|--.-|.|+++|.-|
T Consensus 16 f~le~G~~l~~~~l~Y~t~G~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG 95 (362)
T d2pl5a1 16 LILNNGSVLSPVVIAYETYGTLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIG 95 (362)
T ss_dssp EECTTSCEESSEEEEEEEEECCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTT
T ss_pred eecCCCCCcCCceEEEEeeeccCCCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeecccc
Confidence 3445676664 5555542 1111234589999998444321 1222 1111 22223459999999999
Q ss_pred CCCC--CCcccccc-----cccCCCCcHHHHHHHHHHHHHcCCCCCCcE-EEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 534 GGGG--GKKWHHDG-----RRTKKLNSIKDFISCARFLIEKEIVKEHKL-AGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 534 ~g~~--g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
+|.. |..=.... .......++.|++++-+-|+++=-+ +|+ +|+|+||||+.++..+.++|+.++.+|+.+
T Consensus 96 ~~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia 173 (362)
T d2pl5a1 96 GCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMA 173 (362)
T ss_dssp CSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEES
T ss_pred CcccccCccccccccccccCcCCccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccc
Confidence 7632 11100000 0112345799988887777765333 455 488999999999999999999999999887
Q ss_pred Cc
Q 004866 606 PF 607 (726)
Q Consensus 606 p~ 607 (726)
+-
T Consensus 174 ~s 175 (362)
T d2pl5a1 174 ST 175 (362)
T ss_dssp CC
T ss_pred cc
Confidence 63
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.49 E-value=2.9e-06 Score=86.43 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=88.5
Q ss_pred EEECCCCcEEE-EEEEEcC-CCCCCCCccEEEEEcCCCCCCCCccc-hHHH---HHHHHCCcEEEEEccCCCCCCCCccc
Q 004866 469 DVPSHDGISVP-LTIIYSP-KYKKENQNPGLLHGHGAYGELLDKRW-RSEL---KSLLDRGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 469 ~~~s~dG~~i~-~~l~~p~-~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~---~~l~~~G~~v~~~d~RG~g~~g~~~~ 542 (726)
.|+-..|..|+ +.|.|-. +.-...+.++||+.|+-.+......| ...+ ..|=-.-|.|+++|.-|++. |..--
T Consensus 17 ~F~le~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~~-gst~p 95 (376)
T d2vata1 17 LFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPF-GSAGP 95 (376)
T ss_dssp EEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSS-SSSST
T ss_pred cEEeCCCCCcCCceEEEEeecccCCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCCc-CCCCC
Confidence 35667788774 6666653 21122456899999986555433333 2221 33333569999999998862 22111
Q ss_pred ccc------c----ccCCCCcHHHHHHHHHHHHHcCCCCCCcE-EEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 543 HDG------R----RTKKLNSIKDFISCARFLIEKEIVKEHKL-AGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 543 ~~~------~----~~~~~~~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
... . ......++.|.+.+-..|+++--+ +|+ +|+|+||||+.++..+.++|++.+.+|..+.-
T Consensus 96 ~s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI--~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~ 169 (376)
T d2vata1 96 CSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGV--RQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATS 169 (376)
T ss_dssp TSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTC--CCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCC
T ss_pred CCCCcccccCCcccccCCcchhHHHHHHHHHHHHHhCc--ceEEEeecccHHHHHHHHHHHhchHHHhhhcccccc
Confidence 110 0 112345889999997777765222 566 79999999999999999999999998877654
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=6.6e-08 Score=105.32 Aligned_cols=132 Identities=15% Similarity=0.044 Sum_probs=85.8
Q ss_pred CCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCC-CCCccchHHHHHH-HHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 472 SHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGE-LLDKRWRSELKSL-LDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l-~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
+.|-..|. |+.|.. ..++.|+|||+|||--. .....+......+ ++.+.+|+.+|||-+- +|.--........
T Consensus 86 sEDCL~ln--I~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~-~Gfl~~~~~~~~~ 160 (526)
T d1p0ia_ 86 SEDCLYLN--VWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGA-LGFLALPGNPEAP 160 (526)
T ss_dssp CSCCCEEE--EEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHH-HHHCCCTTCTTSC
T ss_pred CCcCCEEE--EEeCCC--CCCCCceEEEEECCCcccccCcccccCccccccccceeEEeccccccc-ccccCCCCccccc
Confidence 56665544 566764 34678999999996322 1112222222334 3569999999999431 1100000111223
Q ss_pred CCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCcc
Q 004866 550 KLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFL 608 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 608 (726)
+...+.|.+.|++|+.+.-- =||+||.|+|+|+||..+..++.. ...+|+.+|+.++..
T Consensus 161 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 161 GNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 44579999999999987511 299999999999999999877753 235899999988754
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.44 E-value=1.4e-07 Score=93.73 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=69.0
Q ss_pred CCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHHcCC
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCA-RFLIEKEI 569 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~ 569 (726)
....|.|+++||.........|......|.. ++.|+.++++|.|..... .......+++++.+.+ +.+.+.
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG~~~~~~~-----~~~~~~~s~~~~a~~~~~~i~~~-- 128 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPGYGTGTGT-----GTALLPADLDTALDAQARAILRA-- 128 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTTCCBC--------CBCCEESSHHHHHHHHHHHHHHH--
T ss_pred CCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCCCCCCCC-----ccccccCCHHHHHHHHHHHHHHh--
Confidence 3456889999984332233456666666654 689999999998753221 1112224677766543 334332
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcC----CCceeEEEEeCCc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCC----PDLFRAVVLEVPF 607 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~p~ 607 (726)
....++.|+||||||.++..++.+. +....++|+..+.
T Consensus 129 ~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~ 170 (283)
T d2h7xa1 129 AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPY 170 (283)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCC
T ss_pred cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCC
Confidence 2336799999999999999888764 4456777766543
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=8e-08 Score=105.85 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=86.0
Q ss_pred CCCCcEEEEEEEEcCCCC-CCCCccEEEEEcCCC---CCCCCccch----HHHHHHHH-CCcEEEEEccCCCCCCCCccc
Q 004866 472 SHDGISVPLTIIYSPKYK-KENQNPGLLHGHGAY---GELLDKRWR----SELKSLLD-RGWVVAFADVRGGGGGGKKWH 542 (726)
Q Consensus 472 s~dG~~i~~~l~~p~~~~-~~~~~P~vl~~hGg~---~~~~~~~~~----~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~ 542 (726)
+.|-.-|. |+.|.... ..++.|||||+|||- |+.....+. .....|+. .+.+|+.+|||-+- +|.--.
T Consensus 77 sEDCL~LN--I~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~GFl~~ 153 (579)
T d2bcea_ 77 NEDCLYLN--IWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LGFLST 153 (579)
T ss_dssp CSCCCEEE--EEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HHHCCC
T ss_pred CCcCCEEE--EEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-cccccc
Confidence 56765544 56776532 345799999999972 222111121 12245555 46999999999432 111000
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCC---CCCCcEEEEEecccHHHHHHHHHc--CCCceeEEEEeCCcc
Q 004866 543 HDGRRTKKLNSIKDFISCARFLIEKEI---VKEHKLAGWGYSAGGLLVAAAINC--CPDLFRAVVLEVPFL 608 (726)
Q Consensus 543 ~~~~~~~~~~~~~D~~~~~~~l~~~~~---~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 608 (726)
......+...+.|.+.|++|+.++-- =||+||.|+|+|+||..+...+.. ...+|+.+|+++|..
T Consensus 154 -~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 154 -GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp -SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred -cccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 11112234579999999999987621 299999999999999999877653 246999999999754
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.37 E-value=6.4e-05 Score=75.63 Aligned_cols=103 Identities=12% Similarity=-0.000 Sum_probs=62.1
Q ss_pred ceeeCCCCCEEEEEEeCC-----CCcEEEEEEEECCCCceecccc---------ccccceeEEecCCCEEEEEEecCCCC
Q 004866 126 LSEVSPDHKFLAYTMYDK-----DNDYFTLSVRNLNSGALCSKPQ---------AVRVSNIAWAKDGQALIYVVTDQNKR 191 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~-----g~e~~~l~v~dl~tg~~~~~~~---------~~~~~~~~WspDg~~l~y~~~~~~~~ 191 (726)
.++|||||++|+++.... |.....|+++|+++++.+.... ......++|+|||+.+++.... .
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---~ 127 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---P 127 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---S
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC---C
Confidence 468999999998764321 2223469999999998765321 1123568999999999886433 2
Q ss_pred CceEEEEEcCCCCceeEEe--------eecCCceEEEEEEcCCCcEEEEEE
Q 004866 192 PYQIYCSIIGSTDEDALLL--------EESNENVYVNIRHTKDFHFVCVHT 234 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~--------~~~d~~~~~~~~~s~Dg~~l~~~~ 234 (726)
...++..+..++.....+. ..... ..+.+++||+.+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dg~~~~v~~ 175 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD---TFFMHCRDGSLAKVAF 175 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEETT---EEEEEETTSCEEEEEC
T ss_pred CceeeeeecCCCcEeeEEecCCcceEeecCCc---ceEEEcCCCCEEEEEe
Confidence 2356666766553111111 00111 1245678888777654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=4.1e-05 Score=76.20 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=76.0
Q ss_pred CEEEEEEeCCCCcEEEEEEEECCCCceec-c--cc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeE
Q 004866 134 KFLAYTMYDKDNDYFTLSVRNLNSGALCS-K--PQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDAL 208 (726)
Q Consensus 134 ~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~--~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~l 208 (726)
++++|++...++ +|+|+++.+...+. + .. ......++|||||++||.+... ...|..+++.... ...+
T Consensus 3 ~~~v~v~~~~~~---~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~----d~~i~~~~i~~~~~~~~~ 75 (333)
T d1ri6a_ 3 KQTVYIASPESQ---QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP----EFRVLAYRIAPDDGALTF 75 (333)
T ss_dssp EEEEEEEEGGGT---EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT----TTEEEEEEECTTTCCEEE
T ss_pred ceEEEEECCCCC---cEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC----CCeEEEEEEeCCCCcEEE
Confidence 567777764443 58888886543222 1 11 3456789999999999776432 2356666776543 2233
Q ss_pred EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCceEEeeeecCCEEEEEecC
Q 004866 209 LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGLAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 209 v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~g~~l~~~t~~ 281 (726)
+........-..+++||||++|++.......-.+|..+..... ........ .......++++++.++.....
T Consensus 76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~ 148 (333)
T d1ri6a_ 76 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-GVVDVVEGLDGCHSANISPDNRTLWVPALK 148 (333)
T ss_dssp EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-EEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce-ecccccCCCccceEEEeeecceeeeccccc
Confidence 3222221112357899999999877654433333333322210 01111111 122234567888877766543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.34 E-value=0.00016 Score=70.45 Aligned_cols=134 Identities=11% Similarity=0.091 Sum_probs=86.1
Q ss_pred EEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecC
Q 004866 136 LAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESN 214 (726)
Q Consensus 136 la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d 214 (726)
.||+.+..++ .|.|+|+++++.+.... ......++|||||++||.+... ...|.++|+.+++.-. .+....
T Consensus 3 ~~yV~~~~~~---~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~----~~~i~v~d~~t~~~~~-~~~~~~ 74 (301)
T d1l0qa2 3 FAYIANSESD---NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAH----SNDVSIIDTATNNVIA-TVPAGS 74 (301)
T ss_dssp EEEEEETTTT---EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGG----GTEEEEEETTTTEEEE-EEECSS
T ss_pred EEEEEECCCC---EEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECC----CCEEEEEECCCCceee-eeeccc
Confidence 4677665443 48999999998775433 3345678999999999876432 3479999998775211 222222
Q ss_pred CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCc
Q 004866 215 ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 215 ~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~ 282 (726)
....+.+++|++++++..... ..+.+++..++. ....+..........++++|..+++....+
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~ 137 (301)
T d1l0qa2 75 --SPQGVAVSPDGKQVYVTNMAS--STLSVIDTTSNT-VAGTVKTGKSPLGLALSPDGKKLYVTNNGD 137 (301)
T ss_dssp --SEEEEEECTTSSEEEEEETTT--TEEEEEETTTTE-EEEEEECSSSEEEEEECTTSSEEEEEETTT
T ss_pred --ccccccccccccccccccccc--ceeeecccccce-eeeeccccccceEEEeecCCCeeeeeeccc
Confidence 224678999999988766543 456777877631 233333333334456678888887776543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.33 E-value=9.2e-05 Score=73.74 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=74.2
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
+++|++|++|+... ..+ +|.|+|+++++.+.... ......++|+|||+.||.+.. ....|+.+|+.++
T Consensus 2 ~a~~~~~~~l~~~~-~~~----~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~----~~~~v~~~d~~t~ 72 (346)
T d1jmxb_ 2 PALKAGHEYMIVTN-YPN----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTC 72 (346)
T ss_dssp CCCCTTCEEEEEEE-TTT----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET----TTTEEEEEETTTT
T ss_pred ccCCCCCcEEEEEc-CCC----EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC----CCCcEEEEeCccC
Confidence 67999999998874 444 59999999998765322 224568999999999987642 2347999999877
Q ss_pred CceeEEeeecCCc----eEEEEEEcCCCcEEEEEEcCC---------CceEEEEEeCCC
Q 004866 204 DEDALLLEESNEN----VYVNIRHTKDFHFVCVHTFST---------TSSKVFLINAAD 249 (726)
Q Consensus 204 ~~~~lv~~~~d~~----~~~~~~~s~Dg~~l~~~~~~~---------~~~~l~~~d~~~ 249 (726)
+....+....... ...++.+||||+++++..... ....+.+++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (346)
T d1jmxb_ 73 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 131 (346)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc
Confidence 5211111111110 012468899999998775432 123466666655
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=1.3e-06 Score=73.52 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=68.0
Q ss_pred EECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccC
Q 004866 470 VPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTK 549 (726)
Q Consensus 470 ~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 549 (726)
|-.-+|.+|++... +..|.||++||.+.. |. ..+.++|.|+.+|.||+|.+..
T Consensus 5 ~~~~~G~~l~y~~~--------G~G~pvlllHG~~~~-----w~----~~L~~~yrvi~~DlpG~G~S~~---------- 57 (122)
T d2dsta1 5 YLHLYGLNLVFDRV--------GKGPPVLLVAEEASR-----WP----EALPEGYAFYLLDLPGYGRTEG---------- 57 (122)
T ss_dssp EEEETTEEEEEEEE--------CCSSEEEEESSSGGG-----CC----SCCCTTSEEEEECCTTSTTCCC----------
T ss_pred EEEECCEEEEEEEE--------cCCCcEEEEeccccc-----cc----ccccCCeEEEEEeccccCCCCC----------
Confidence 34457888775432 345778899985322 21 1245799999999999997632
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCcEEEEEecccHHHHHHHHHcCCC
Q 004866 550 KLNSIKDFISCARFLIEKEIVKEHKLAGWGYSAGGLLVAAAINCCPD 596 (726)
Q Consensus 550 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~ 596 (726)
...+.+++.+.+..++++- +-++..|+|+|+||.++..++...+.
T Consensus 58 p~~s~~~~a~~i~~ll~~L--~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 58 PRMAPEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CCCCHHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred cccccchhHHHHHHHHHHh--CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 1246677777777776652 33688999999999999998886554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=0.00026 Score=70.74 Aligned_cols=238 Identities=9% Similarity=0.023 Sum_probs=124.7
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-------ccccceeEEecCCCEEEEEEecCCCCCceE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-------AVRVSNIAWAKDGQALIYVVTDQNKRPYQI 195 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-------~~~~~~~~WspDg~~l~y~~~~~~~~~~~l 195 (726)
.+..++|||||++||-.. +| .|.|||+.++....... ...+..++|+|||+.|+....+ ..|
T Consensus 53 ~V~~v~fs~~g~~latg~--dg----~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d-----g~i 121 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG--KG----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STL 121 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--BS----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEE
T ss_pred cEEEEEECCCCCEEEEEE--CC----EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc-----ccc
Confidence 466778999999998653 23 49999998865332111 2246779999999988765433 368
Q ss_pred EEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-cCCce-EEeeeecCC
Q 004866 196 YCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-CEGLA-HCIVEHHEG 273 (726)
Q Consensus 196 ~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~-~~~~~~~g~ 273 (726)
.++++..........-.........+.++||+.+++..... ..+.++++.++ +...... ....+ ...+++++.
T Consensus 122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD---GNIAVWDLHNQ--TLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccc---ccccccccccc--ccccccccccccccccccccccc
Confidence 88888654322111111122223456789999998765543 35788888763 3322222 22222 234556777
Q ss_pred EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCCCCCC
Q 004866 274 FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPLPAGK 352 (726)
Q Consensus 274 ~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~~~~ 352 (726)
.++..+.. ..+..+++. . . +.+........+..+.+.. +.++++...+|. +.++++..+.
T Consensus 197 ~~~~~~~d---------~~v~i~d~~-~---~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~--i~i~d~~~~~-- 257 (337)
T d1gxra_ 197 KLWTGGLD---------NTVRSWDLR-E---G--RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN--VEVLHVNKPD-- 257 (337)
T ss_dssp EEEEEETT---------SEEEEEETT-T---T--EEEEEEECSSCEEEEEECTTSSEEEEEETTSC--EEEEETTSSC--
T ss_pred cccccccc---------ccccccccc-c---c--eeecccccccceEEEEEcccccccceeccccc--cccccccccc--
Confidence 76665432 224445554 1 1 1111111223344554432 344445555554 4556665432
Q ss_pred cceeecccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECCCCeEE
Q 004866 353 GVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLSYGKWN 411 (726)
Q Consensus 353 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 411 (726)
... ...-...+.++ .+++++..++ +.+.- ..+..+|..+++..
T Consensus 258 ---~~~-----~~~~~~~i~~v----~~s~~g~~l~-s~s~D---g~i~iwd~~~~~~~ 300 (337)
T d1gxra_ 258 ---KYQ-----LHLHESCVLSL----KFAYCGKWFV-STGKD---NLLNAWRTPYGASI 300 (337)
T ss_dssp ---EEE-----ECCCSSCEEEE----EECTTSSEEE-EEETT---SEEEEEETTTCCEE
T ss_pred ---ccc-----ccccccccceE----EECCCCCEEE-EEeCC---CeEEEEECCCCCEE
Confidence 010 01111222222 2345566543 33322 47888998887654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.26 E-value=1.6e-05 Score=83.47 Aligned_cols=147 Identities=11% Similarity=-0.042 Sum_probs=89.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---cc----ccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AV----RVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~----~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
+..+++||||++|+.+ +++| .+.++|+++++...... .. ...++.|||||++|+.+.... ..|.
T Consensus 64 ~~~v~fSpDG~~l~~~-s~dg----~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----~~v~ 134 (432)
T d1qksa2 64 VHISRLSASGRYLFVI-GRDG----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP----PQYV 134 (432)
T ss_dssp EEEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET----TEEE
T ss_pred eeEEEECCCCCEEEEE-cCCC----CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC----CeEE
Confidence 4567899999999655 5554 48999999987432211 11 223446788999998875543 3688
Q ss_pred EEEcCCCC-ceeEEeee--------cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCC-eEEeeccCCceEE
Q 004866 197 CSIIGSTD-EDALLLEE--------SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSG-LTLIWECEGLAHC 266 (726)
Q Consensus 197 ~~~l~t~~-~~~lv~~~--------~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~-~~~l~~~~~~~~~ 266 (726)
++|..+++ ........ ........+..|+||+.++++... ..++++++..++... ...+.........
T Consensus 135 i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~--~~~i~~~d~~~~~~~~~~~i~~g~~~~~~ 212 (432)
T d1qksa2 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--TGKILLVDYTDLNNLKTTEISAERFLHDG 212 (432)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--TTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc--CCeEEEEEccCCCcceEEEEcccCccccc
Confidence 88887765 22111100 011122456789999998877654 457888998774311 1222222222345
Q ss_pred eeeecCCEEEEEecC
Q 004866 267 IVEHHEGFLYLFTDA 281 (726)
Q Consensus 267 ~~~~~g~~l~~~t~~ 281 (726)
.++++|+.++..++.
T Consensus 213 ~~spdg~~~~va~~~ 227 (432)
T d1qksa2 213 GLDGSHRYFITAANA 227 (432)
T ss_dssp EECTTSCEEEEEEGG
T ss_pred eECCCCCEEEEeccc
Confidence 678899888877654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.24 E-value=3.4e-05 Score=80.88 Aligned_cols=112 Identities=5% Similarity=-0.008 Sum_probs=69.0
Q ss_pred eCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCcee
Q 004866 129 VSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA 207 (726)
Q Consensus 129 ~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~ 207 (726)
...|.+.+.++.....+ .|.|+|++|++.+.... ......++|||||++||.... ...|.++++.+++...
T Consensus 26 ~~~~~~~~~~v~~~d~g---~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-----dg~v~~~d~~t~~~~~ 97 (432)
T d1qksa2 26 NDWDLENLFSVTLRDAG---QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-----DGKVNMIDLWMKEPTT 97 (432)
T ss_dssp SCCCGGGEEEEEETTTT---EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCCE
T ss_pred ecCCCCcEEEEEEcCCC---EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-----CCCEEEEEeeCCCceE
Confidence 34454444433333322 48999999999876543 335678999999999976532 2378889988765211
Q ss_pred -EEeeecCCc--eEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 208 -LLLEESNEN--VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 208 -lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
.-....... ...++.+||||++|+++.... ..+.++|.+++
T Consensus 98 ~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~--~~v~i~d~~t~ 141 (432)
T d1qksa2 98 VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP--PQYVIMDGETL 141 (432)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEET--TEEEEEETTTC
T ss_pred EEEEecCCCCCCeEEecccCCCCCEEEEEcCCC--CeEEEEeCccc
Confidence 111111111 122346789999998766533 45788898874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.23 E-value=0.0001 Score=72.99 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=72.2
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-------ccccceeEEecCCCEEEEEEecCCC------
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-------AVRVSNIAWAKDGQALIYVVTDQNK------ 190 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-------~~~~~~~~WspDg~~l~y~~~~~~~------ 190 (726)
...+++||||++|+.+....| .|+++|+++|+.+.... ......++|+||++.++........
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~----~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ccEEEECCCCCEEEEEECCCC----eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 456789999999866533333 59999999998764321 1234578999999999887543211
Q ss_pred -CCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 191 -RPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 191 -~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
....+...+..+..... .+...... ..+.++|||++++.... +++++|..+
T Consensus 112 ~~~~~~~~~d~~~~~~~~-~~~~~~~~--~~~~~s~dg~~l~~~~~-----~~~~~d~~~ 163 (337)
T d1pbyb_ 112 VQPTRVALYDAETLSRRK-AFEAPRQI--TMLAWARDGSKLYGLGR-----DLHVMDPEA 163 (337)
T ss_dssp ECCCEEEEEETTTTEEEE-EEECCSSC--CCEEECTTSSCEEEESS-----SEEEEETTT
T ss_pred ccccceeeccccCCeEEE-eccccCCc--eEEEEcCCCCEEEEEcC-----Ccceeeeec
Confidence 23456777777654211 22222222 24678999999987532 355667665
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.22 E-value=0.0002 Score=70.00 Aligned_cols=138 Identities=11% Similarity=0.084 Sum_probs=80.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.+..++|||||++||-. ..+| .|.+||+++|+...... ...+..+.|+|||+.+ ....+ ..+.+++
T Consensus 14 ~V~~l~~s~dg~~l~s~-s~Dg----~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d-----~~v~~~~ 82 (299)
T d1nr0a2 14 AITALSSSADGKTLFSA-DAEG----HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWD-----DHLKVVP 82 (299)
T ss_dssp CEEEEEECTTSSEEEEE-ETTS----CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETT-----TEEEEEC
T ss_pred CcEEEEECCCCCEEEEE-cCCC----eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccce-----eeEEEec
Confidence 47778999999998765 4455 39999999998765432 2356789999999743 33322 2566666
Q ss_pred cCCCC-c-eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEE
Q 004866 200 IGSTD-E-DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYL 277 (726)
Q Consensus 200 l~t~~-~-~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~ 277 (726)
+.... . ...+..... .....+.+++||+.++..... .+.+++... ...+..........+++++..|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~~~~~~~~----~i~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLS-SQPLGLAVSADGDIAVAACYK----HIAIYSHGK----LTEVPISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp SSSSSSCTTSCCEEECS-SCEEEEEECTTSSCEEEEESS----EEEEEETTE----EEEEECSSCEEEEEECTTSCEEEE
T ss_pred cCCcccccccccccccc-ccccccccccccccccccccc----ccccccccc----cccccccccccccccccccccccc
Confidence 65432 1 111111111 122357889999987765442 456666432 222222222223345677777665
Q ss_pred Eec
Q 004866 278 FTD 280 (726)
Q Consensus 278 ~t~ 280 (726)
.+.
T Consensus 154 g~~ 156 (299)
T d1nr0a2 154 GGQ 156 (299)
T ss_dssp EET
T ss_pred ccc
Confidence 544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.17 E-value=7.1e-05 Score=76.29 Aligned_cols=103 Identities=11% Similarity=0.003 Sum_probs=66.5
Q ss_pred ceeeCCCCCEEEEEEeC-----CCCcEEEEEEEECCCCceecccc---------ccccceeEEecCCCEEEEEEecCCCC
Q 004866 126 LSEVSPDHKFLAYTMYD-----KDNDYFTLSVRNLNSGALCSKPQ---------AVRVSNIAWAKDGQALIYVVTDQNKR 191 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~-----~g~e~~~l~v~dl~tg~~~~~~~---------~~~~~~~~WspDg~~l~y~~~~~~~~ 191 (726)
.+.|||||+.|+++... .|.....|.++|+.+++.+.... ......++|||||++||+....
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~---- 144 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---- 144 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS----
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC----
Confidence 46899999999987642 24445679999999998765321 1123468999999999987533
Q ss_pred CceEEEEEcCCCCceeEEeeec-------CCceEEEEEEcCCCcEEEEEE
Q 004866 192 PYQIYCSIIGSTDEDALLLEES-------NENVYVNIRHTKDFHFVCVHT 234 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~~~~-------d~~~~~~~~~s~Dg~~l~~~~ 234 (726)
+..++++|+.+.+....+-... ... ..+..++||+.+++..
T Consensus 145 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~Dg~~~~~~~ 192 (368)
T d1mdah_ 145 SSAAAGLSVPGASDDQLTKSASCFHIHPGAAA--THYLGSCPASLAASDL 192 (368)
T ss_dssp SSCEEEEEETTTEEEEEEECSSCCCCEEEETT--EEECCCCTTSCEEEEC
T ss_pred CCeEEEEECCCCcEeEEeeccCcceEccCCCc--eEEEEcCCCCEEEEEe
Confidence 3478888888765211111000 011 1245688888777754
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.3e-06 Score=85.22 Aligned_cols=92 Identities=14% Similarity=0.039 Sum_probs=58.7
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHH-HHHHHHcCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISC-ARFLIEKEIV 570 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~ 570 (726)
.+.| ||++||++++. ..|......| ++.|+.+|.||.|.+. .++++.+. ++.+.+. .
T Consensus 24 ~~~P-l~l~Hg~~gs~--~~~~~l~~~L---~~~v~~~d~~g~~~~~--------------~~~~~a~~~~~~~~~~--~ 81 (286)
T d1xkta_ 24 SERP-LFLVHPIEGST--TVFHSLASRL---SIPTYGLQCTRAAPLD--------------SIHSLAAYYIDCIRQV--Q 81 (286)
T ss_dssp CSCC-EEEECCTTCCC--GGGHHHHHTC---SSCEEEECCCTTSCCS--------------CHHHHHHHHHHHHHHH--C
T ss_pred CCCe-EEEECCCCccH--HHHHHHHHHc---CCeEEEEeCCCCCCCC--------------CHHHHHHHHHHHHHHh--c
Confidence 3446 67889988764 4565555444 7889999999987641 23333322 1222221 2
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeC
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEV 605 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 605 (726)
..+++.++|||+||.+++.++.++|++...++...
T Consensus 82 ~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 82 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred CCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 34689999999999999999999999877766544
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.15 E-value=0.00017 Score=71.62 Aligned_cols=144 Identities=8% Similarity=0.058 Sum_probs=86.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccc-c---ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKP-Q---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~-~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++||.+. .+| .|.|||+.+++..... . ...+..+.|+||++.|+....+. ...+.+.
T Consensus 60 ~v~~~~~sp~g~~latg~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~---~~~~~v~ 131 (311)
T d1nr0a1 60 QTTVAKTSPSGYYCASGD-VHG----NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR---ERFGHVF 131 (311)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS---SCSEEEE
T ss_pred CEEEEEEeCCCCeEeccc-cCc----eEeeeeeeccccccccccccccCccccccccccccccccccccc---ccccccc
Confidence 467778999999998764 445 4999999988643221 1 33567899999999887764321 2234555
Q ss_pred EcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCce-EEeeeecCCEEE
Q 004866 199 IIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGLA-HCIVEHHEGFLY 276 (726)
Q Consensus 199 ~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~-~~~~~~~g~~l~ 276 (726)
++.+++....+ ..... ....+.|+|++++++++.... ..|.++|+.+ .+....... ...+ ...++++++.++
T Consensus 132 ~~~~~~~~~~l-~~h~~-~v~~v~~~~~~~~~l~sgs~d--~~i~i~d~~~--~~~~~~~~~~~~~i~~v~~~p~~~~l~ 205 (311)
T d1nr0a1 132 LFDTGTSNGNL-TGQAR-AMNSVDFKPSRPFRIISGSDD--NTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLFA 205 (311)
T ss_dssp ETTTCCBCBCC-CCCSS-CEEEEEECSSSSCEEEEEETT--SCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccc-ccccc-ccccccccccceeeecccccc--cccccccccc--cccccccccccccccccccCccccccc
Confidence 66655421111 11112 234578999999876655433 3477788876 332222222 2222 334567888766
Q ss_pred EEec
Q 004866 277 LFTD 280 (726)
Q Consensus 277 ~~t~ 280 (726)
..+.
T Consensus 206 ~~~~ 209 (311)
T d1nr0a1 206 STGG 209 (311)
T ss_dssp EEET
T ss_pred cccc
Confidence 5544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.14 E-value=5.4e-05 Score=79.01 Aligned_cols=127 Identities=8% Similarity=0.017 Sum_probs=80.3
Q ss_pred cEEEeecccccccCCceEEeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEE
Q 004866 105 EQKLLDYNQEAERFGGYAYEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIY 183 (726)
Q Consensus 105 ~~~lld~n~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y 183 (726)
.+++++++.+... +.+++|.+.+.++....++ .|.|+|++|++.+.... ......+++||||+.||.
T Consensus 11 ~~~~~~~~~~p~~---------~~~~~d~~~~~~V~~~~dg---~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~ 78 (426)
T d1hzua2 11 WKVLVKPEDRPKK---------QLNDLDLPNLFSVTLRDAG---QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLV 78 (426)
T ss_dssp CEESSCGGGSCSS---------CCSCCCGGGEEEEEETTTT---EEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred heeeCCcccCCCc---------ccccCCCCeEEEEEEcCCC---EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEE
Confidence 3666666655432 2378888877766554433 59999999998776433 335677999999998865
Q ss_pred EEecCCCCCceEEEEEcCCCCc-eeEEeeecCCc--eEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 184 VVTDQNKRPYQIYCSIIGSTDE-DALLLEESNEN--VYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 184 ~~~~~~~~~~~l~~~~l~t~~~-~~lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
... ...|.++|+.+++. ........... ...++.+||||++|++..... ..+.++|..+.
T Consensus 79 ~~~-----d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~--~~v~i~d~~~~ 141 (426)
T d1hzua2 79 IGR-----DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP--PQFAIMDGETL 141 (426)
T ss_dssp EET-----TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES--SEEEEEETTTC
T ss_pred EeC-----CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC--CeEEEEcCCcc
Confidence 532 23688999988752 21111111111 123456789999998766433 35677787763
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.04 E-value=0.0022 Score=66.54 Aligned_cols=224 Identities=13% Similarity=0.087 Sum_probs=132.6
Q ss_pred ceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC-----------
Q 004866 170 SNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFST----------- 237 (726)
Q Consensus 170 ~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~----------- 237 (726)
.++.+|||++.++|+......+...|+..|+.+++ .+..+ .... +.++.|++|++.|+++....
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~---~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVK---FSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEEC---SCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-cccc---ccceEEcCCCCEEEEEEeccccCcccccccc
Confidence 45789999999999987777778899999999986 22112 1111 12478999999999887432
Q ss_pred --CceEEEEEeCCCCCCCeEEeeccCCce----EEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCC-----CCCC
Q 004866 238 --TSSKVFLINAADPFSGLTLIWECEGLA----HCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASF-----PSRT 306 (726)
Q Consensus 238 --~~~~l~~~d~~~~~~~~~~l~~~~~~~----~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~-----~~~~ 306 (726)
....+|+..+.++...-..+....+.. ....+.+++.+++.+..... ....++.+++. .+ ....
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~----~~~~~~~~d~~-~~~~~~~~~~~ 278 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD----PVNRLWYCDLQ-QESNGITGILK 278 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS----SCCEEEEEEGG-GSSSSSCSSCC
T ss_pred cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCC----ccEEEEEeeCC-Ccccccccccc
Confidence 125799999987654445565544321 22345677777766554321 13557777764 21 1234
Q ss_pred ceEEeecCCCceEEEEeeeCCEEEEEEEeCCe-eEEEEEecCCCCCCcceeecccccccccCCCceeeeecCCCCcCCCc
Q 004866 307 WESVFIDDQGLVVEDVDFCKTHMALILREGRT-YRLCSVSLPLPAGKGVVHLKELHPHFLPLPKYVSQIVPGPNYDYYSS 385 (726)
Q Consensus 307 ~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 385 (726)
|..++... ......+...++.+++..+.++. .+|..+++..... . .+. ..++-+.....+. .....++
T Consensus 279 ~~~~~~~~-~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~-~--~w~----~vi~~~~~~~~~~---~~~~~~~ 347 (430)
T d1qfma1 279 WVKLIDNF-EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-S--KWK----VLVPEHEKDVLEW---VACVRSN 347 (430)
T ss_dssp CEEEECSS-SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCG-G--GCE----EEECCCSSCEEEE---EEEETTT
T ss_pred eeEeeccc-ccceEEEecCCceeecccCcccccceeEEecCCCCcc-c--cce----EEecccCcceeee---EEEEECC
Confidence 66665433 33344455567788887777654 5888888764321 0 111 0122222211111 1123345
Q ss_pred EEEEEEccCCCCceEEEEECCCCeEEEEE
Q 004866 386 TMRFAISSPVMPDAVVDYDLSYGKWNIIQ 414 (726)
Q Consensus 386 ~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 414 (726)
.+++.+.. ..-++|..+++.+++...+.
T Consensus 348 ~lvl~~~~-~~~~~l~v~~~~~~~~~~~~ 375 (430)
T d1qfma1 348 FLVLCYLH-DVKNTLQLHDLATGALLKIF 375 (430)
T ss_dssp EEEEEEEE-TTEEEEEEEETTTCCEEEEE
T ss_pred EEEEEEEc-CCEeEEEEEECCCCcEEEec
Confidence 66666544 34457888999888876553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.02 E-value=0.0018 Score=64.14 Aligned_cols=205 Identities=10% Similarity=0.046 Sum_probs=114.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+.++.|.+||+ | |.+|..++ .|+.+++++++...... ......+++++||+ ||++..........++..+.
T Consensus 41 ~lEG~~~D~~G~-L-y~~D~~~g---~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-L-FLLDVFEG---NIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp CEEEEEECTTSC-E-EEEETTTC---EEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECT
T ss_pred CcEeCEECCCCC-E-EEEECCCC---EEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcC
Confidence 467889999998 5 44566554 48889998886544322 33456789999996 55553322222345777666
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCC----CceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEE
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFST----TSSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFL 275 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l 275 (726)
.+......+.........-++.+.+||+ |+++.... ....+|+++.++ ...+.+..... .....++++++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSSEE
T ss_pred CCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeeccccceE
Confidence 5544322221111112233578899997 56654332 235689998766 34444443222 1234678899988
Q ss_pred EEEecCcccCCCCCCeEEEEeeCCCCCCCCCc---eEE-eecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 276 YLFTDAAKEGQEADNHYLLRCPVDASFPSRTW---ESV-FIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 276 ~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~v-~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
|+.-... .+|++++++ ....... ..+ ..........++.+.. +.|++....++ .|.+++.+
T Consensus 192 yvad~~~--------~~I~~~d~~-~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g--~V~~~~p~ 257 (319)
T d2dg1a1 192 WVTETTA--------NRLHRIALE-DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNKR 257 (319)
T ss_dssp EEEEGGG--------TEEEEEEEC-TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECTT
T ss_pred EEecccC--------CceEEEEEc-CCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC--EEEEECCC
Confidence 8764432 458888775 2211111 111 1111123355677664 46776665444 67777743
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.00078 Score=68.27 Aligned_cols=114 Identities=9% Similarity=-0.013 Sum_probs=68.6
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+..++|||||++||-.. .++ .|+|||+.++....... ...+..+.|+||++.|+....+ +.-.+|..
T Consensus 53 ~V~~l~fsp~~~~l~s~s-~D~----~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d---~~i~i~~~ 124 (371)
T d1k8kc_ 53 QVTGVDWAPDSNRIVTCG-TDR----NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYF 124 (371)
T ss_dssp CEEEEEEETTTTEEEEEE-TTS----CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT---SSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEE-CCC----eEEEEeecccccccccccccccccccccccccccccceeeccc---Ccceeeee
Confidence 467788999999987653 444 49999998876443211 2356788999999988776433 22345544
Q ss_pred EcCCCCceeEEeee-cCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC
Q 004866 199 IIGSTDEDALLLEE-SNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 248 (726)
Q Consensus 199 ~l~t~~~~~lv~~~-~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 248 (726)
+-.... ....... ........+.|+|||++|+..+.++ .+.++++.
T Consensus 125 ~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~---~v~v~~~~ 171 (371)
T d1k8kc_ 125 EQENDW-WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF---KCRIFSAY 171 (371)
T ss_dssp ETTTTE-EEEEEECTTCCSCEEEEEECTTSSEEEEEETTS---CEEEEECC
T ss_pred eccccc-ccccccccccccccccccccccccceeccccCc---EEEEEeec
Confidence 433321 1111111 1112234678999999987655432 34555553
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.92 E-value=0.0054 Score=61.38 Aligned_cols=62 Identities=6% Similarity=-0.152 Sum_probs=43.4
Q ss_pred ceeeCCCCCEEEEEEeCCC-----CcEEEEEEEECCCCceecccc-c--------cccceeEEecCCCEEEEEEec
Q 004866 126 LSEVSPDHKFLAYTMYDKD-----NDYFTLSVRNLNSGALCSKPQ-A--------VRVSNIAWAKDGQALIYVVTD 187 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g-----~e~~~l~v~dl~tg~~~~~~~-~--------~~~~~~~WspDg~~l~y~~~~ 187 (726)
.+.|||||++|++.....+ .....|.|+|+.+++.+.... . .....+.|++|++.+++...+
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 145 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA 145 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc
Confidence 4689999999998754321 233469999999998765322 1 122457899999988876544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.00083 Score=68.03 Aligned_cols=114 Identities=12% Similarity=0.154 Sum_probs=73.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
+..++|||||++||+.. .+| .|.|||+++++...... ...+..++|+||++.|+-...| ..|++++
T Consensus 10 It~~~~s~dg~~la~~~-~~~----~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd 79 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICP-NNH----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWT 79 (371)
T ss_dssp CCEEEECTTSSEEEEEC-SSS----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEE
T ss_pred eEEEEECCCCCEEEEEe-CCC----EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEe
Confidence 45668999999999874 233 49999999887544322 2456789999999987655332 2577777
Q ss_pred cCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 200 IGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 200 l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+.+.. ...+.+...... ...+.|+||+++|+..+..+ .-.+|.++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~~l~~~s~d~-~i~i~~~~~~~ 128 (371)
T d1k8kc_ 80 LKGRTWKPTLVILRINRA-ARCVRWAPNEKKFAVGSGSR-VISICYFEQEN 128 (371)
T ss_dssp EETTEEEEEEECCCCSSC-EEEEEECTTSSEEEEEETTS-SEEEEEEETTT
T ss_pred eccccccccccccccccc-ccccccccccccceeecccC-cceeeeeeccc
Confidence 76654 333333322222 34678999999988766433 34555555433
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=0.0034 Score=63.18 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=72.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--------------------ccccceeEEecCCCEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--------------------AVRVSNIAWAKDGQALI 182 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--------------------~~~~~~~~WspDg~~l~ 182 (726)
.+..++|||||++||-+. +| .|.|||+.+|+.+.... ...+..++|+|||+.|+
T Consensus 64 ~V~~l~fs~dg~~lasg~--d~----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGC--NK----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp CCCEEEECTTSSEEEEEC--BS----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCEEEEEe--CC----eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 467789999999998753 23 38999999987643210 11245789999999887
Q ss_pred EEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 183 YVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 183 y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
....+ ..|..++..+++. ......... ....+.+++++..++..+.. ..+.++|..+
T Consensus 138 s~~~d-----g~v~i~~~~~~~~-~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~---~~i~~~d~~~ 194 (388)
T d1erja_ 138 TGAED-----RLIRIWDIENRKI-VMILQGHEQ-DIYSLDYFPSGDKLVSGSGD---RTVRIWDLRT 194 (388)
T ss_dssp EEETT-----SCEEEEETTTTEE-EEEECCCSS-CEEEEEECTTSSEEEEEETT---SEEEEEETTT
T ss_pred ecccc-----ccccccccccccc-ccccccccc-cccccccccccccccccccc---eeeeeeeccc
Confidence 65433 2577778766532 112221122 23457889999988766543 3577788876
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.82 E-value=0.015 Score=59.56 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=68.7
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-------------ccccceeEEecCCCEEEEEEecCCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-------------AVRVSNIAWAKDGQALIYVVTDQNKR 191 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-------------~~~~~~~~WspDg~~l~y~~~~~~~~ 191 (726)
-.+.|||||++|+.+....+ .+.++|.++++...... ......+..++|++.++++..+
T Consensus 112 ~s~~~spDG~~l~v~~~~~~----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~---- 183 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPP----QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---- 183 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESS----EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----
T ss_pred EeeeecCCCCEEEEeecCCC----eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC----
Confidence 35678999999987654333 58899999987654321 1112345677777777665422
Q ss_pred CceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 192 PYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 192 ~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
...+...+......-.+. ..+......++.++|+|+++++..... ..+..+++.+
T Consensus 184 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~a~~~~--~~~~~~~~~~ 238 (426)
T d1hzua2 184 TGKVLLVNYKDIDNLTVT-SIGAAPFLADGGWDSSHRYFMTAANNS--NKVAVIDSKD 238 (426)
T ss_dssp TTEEEEEECSSSSSCEEE-EEECCSSEEEEEECTTSCEEEEEETTC--SEEEEEETTT
T ss_pred CCeEEEEEeccccceeeE-EeccCCccEeeeECCCCcEEEeeeecc--cceeeeeccc
Confidence 235555555443311111 112233345688999999998766543 4566677766
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.80 E-value=0.0066 Score=59.29 Aligned_cols=198 Identities=16% Similarity=0.185 Sum_probs=104.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
+.+++++|||+. |..+..+. +|+.++.++..............++|+|||+ ||++.... ..++++++...
T Consensus 30 ~e~iAv~pdG~l--~vt~~~~~---~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~----~~~~~~~~~~~ 99 (302)
T d2p4oa1 30 LENLASAPDGTI--FVTNHEVG---EIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNA----DSIPVVSLVKS 99 (302)
T ss_dssp EEEEEECTTSCE--EEEETTTT---EEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEECT----TSCEEEEEECT
T ss_pred cCCEEECCCCCE--EEEeCCCC---EEEEEeCCCCEEEEEcCCCCcceEEEcCCCC-eEEEecCC----ceEEEEEeccc
Confidence 456789999984 44455443 5888997755333222245667899999998 66665432 23444444333
Q ss_pred C-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC------Cc--eEEeeeecCCE
Q 004866 204 D-EDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE------GL--AHCIVEHHEGF 274 (726)
Q Consensus 204 ~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~------~~--~~~~~~~~g~~ 274 (726)
. ....+.......+.-++.+.+||+.++ ... ....+|.++..++........... .. .-..+..+++.
T Consensus 100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v-~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~ 176 (302)
T d2p4oa1 100 DGTVETLLTLPDAIFLNGITPLSDTQYLT-ADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF 176 (302)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEE-EET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred ccceeeccccCCccccceeEEccCCCEEe-ecc--ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc
Confidence 2 223343334444455678889997543 222 235788888876322111111100 00 11123456777
Q ss_pred EEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecC
Q 004866 275 LYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 275 l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 347 (726)
+|+..... ..|++++.+ ......-..+..+. ....++.... +.|++....++ +|.+++.+
T Consensus 177 l~~~~~~~--------~~i~~~~~~-~~~~~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~~--~V~~i~p~ 237 (302)
T d2p4oa1 177 LYVSNTEK--------MLLLRIPVD-STDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYN--SVVRIAPD 237 (302)
T ss_dssp EEEEETTT--------TEEEEEEBC-TTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTC--CEEEECTT
T ss_pred eeeecCCC--------CeEEecccc-ccccccccccccCC--CCCcceEECCCCCEEEEEcCCC--cEEEECCC
Confidence 77765432 457888776 22211111222221 2234556654 45666554443 57777654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.0037 Score=61.97 Aligned_cols=186 Identities=12% Similarity=0.014 Sum_probs=107.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+....|+||+..++... ..+ .|.++++.+++...... ...+..++|+++++.++....+ ..|..+++.
T Consensus 144 v~~~~~~~~~~~l~s~~-~d~----~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~ 213 (337)
T d1gxra_ 144 CYALAISPDSKVCFSCC-SDG----NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLR 213 (337)
T ss_dssp EEEEEECTTSSEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred ccccccccccccccccc-ccc----ccccccccccccccccccccccccccccccccccccccccc-----ccccccccc
Confidence 44567999999987654 334 38999999987655432 3356678999999988876433 368888887
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEec
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFTD 280 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~ 280 (726)
++.. ...+...+ ....+.++|++++|+....+ ..+.++|+.++ ...........+ ...++++|+.|+..+.
T Consensus 214 ~~~~-~~~~~~~~--~i~~l~~~~~~~~l~~~~~d---~~i~i~d~~~~--~~~~~~~~~~~i~~v~~s~~g~~l~s~s~ 285 (337)
T d1gxra_ 214 EGRQ-LQQHDFTS--QIFSLGYCPTGEWLAVGMES---SNVEVLHVNKP--DKYQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp TTEE-EEEEECSS--CEEEEEECTTSSEEEEEETT---SCEEEEETTSS--CEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccee-eccccccc--ceEEEEEcccccccceeccc---ccccccccccc--ccccccccccccceEEECCCCCEEEEEeC
Confidence 6642 11222222 23467899999998876543 35788888763 222222222222 2346688886655433
Q ss_pred CcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEE
Q 004866 281 AAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLC 342 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~ 342 (726)
+ ..|..++.. . ......+.+ ...+..+.+.. +.++++...+|.-+|+
T Consensus 286 -D--------g~i~iwd~~-~---~~~~~~~~~--~~~v~~~~~s~d~~~l~t~s~D~~I~vW 333 (337)
T d1gxra_ 286 -D--------NLLNAWRTP-Y---GASIFQSKE--SSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp -T--------SEEEEEETT-T---CCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred -C--------CeEEEEECC-C---CCEEEEccC--CCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 2 124444543 1 111111222 23455555543 3455566666654443
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=4.2e-05 Score=73.84 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=62.9
Q ss_pred CCCccEEEEEcCCCCCCCC-ccchHHHHHHHHC--CcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHc
Q 004866 491 ENQNPGLLHGHGAYGELLD-KRWRSELKSLLDR--GWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEK 567 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 567 (726)
..+.|+ |++||-.+.... ..+......+.++ |+.|..+++...... . ........+.+.++.+...+++
T Consensus 3 ~~P~PV-VLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~~------~-~~~~~~~~~~~~~e~v~~~I~~ 74 (279)
T d1ei9a_ 3 PAPLPL-VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLRE------D-VENSFFLNVNSQVTTVCQILAK 74 (279)
T ss_dssp TSSCCE-EEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHHH------H-HHHHHHSCHHHHHHHHHHHHHS
T ss_pred CCCCcE-EEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCccc------c-cccchhhhHHHHHHHHHHHHHh
Confidence 345664 577885443222 2345555666554 999998887543211 0 0000112355555555544444
Q ss_pred CCCCCCcEEEEEecccHHHHHHHHHcCCC-ceeEEEEeC
Q 004866 568 EIVKEHKLAGWGYSAGGLLVAAAINCCPD-LFRAVVLEV 605 (726)
Q Consensus 568 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~ 605 (726)
-..-.+++-++|||+||.++-+++.+.++ .....|..+
T Consensus 75 ~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLg 113 (279)
T d1ei9a_ 75 DPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVG 113 (279)
T ss_dssp CGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEES
T ss_pred ccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEEC
Confidence 32334689999999999999999988775 355566544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.68 E-value=0.00055 Score=66.64 Aligned_cols=142 Identities=12% Similarity=0.119 Sum_probs=85.9
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
...+++|||+++|+... .+| .|.++|+.+++...... ...+..++|+||++.|+....+ ..|+.+++
T Consensus 139 ~~~~~~s~~~~~l~~g~-~dg----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~ 208 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGG-QDS----KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS-----RKVIPYSV 208 (299)
T ss_dssp EEEEEECTTSCEEEEEE-TTS----EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SCEEEEEG
T ss_pred ccccccccccccccccc-ccc----cccccccccccccccccccccccccccccccccccccccccc-----cccccccc
Confidence 34567999999998764 444 48999998886544322 3356789999999988765322 36888888
Q ss_pred CCCCceeEE--eeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc--CCceEEeeeecCCEEE
Q 004866 201 GSTDEDALL--LEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC--EGLAHCIVEHHEGFLY 276 (726)
Q Consensus 201 ~t~~~~~lv--~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~g~~l~ 276 (726)
.++.....+ +.... .....+.|+|||++|+..+.+ ..|+++|+.++.......... ...+.....++++.|+
T Consensus 209 ~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 284 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHT-AKVACVSWSPDNVRLATGSLD---NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284 (299)
T ss_dssp GGTTEESCCCCCCCCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEE
T ss_pred cccccccccccccccc-cccccccccccccceEEEcCC---CEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEE
Confidence 665311111 11111 123457899999998876553 358888988754333222221 1223333456677655
Q ss_pred EEe
Q 004866 277 LFT 279 (726)
Q Consensus 277 ~~t 279 (726)
-.+
T Consensus 285 s~s 287 (299)
T d1nr0a2 285 SAG 287 (299)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.0092 Score=58.13 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=44.8
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEe
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVT 186 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~ 186 (726)
.+..++|||||++||-.. .+| .|.|||+.+++.+.... ...+..++|+||++.|+....
T Consensus 57 ~I~~l~~s~~~~~l~sgs-~Dg----~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 117 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSAS-QDG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTT----EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET
T ss_pred CEEEEEECCCCCEEEEEE-CCC----ceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc
Confidence 467788999999997764 455 49999999998765322 345678999999998877643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.58 E-value=0.0019 Score=63.93 Aligned_cols=146 Identities=9% Similarity=-0.088 Sum_probs=83.8
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+..+.|||||++|+....... ..+.+++.++++.+.... ...+..+.|+|++..++.+...+ ..+.++++.
T Consensus 118 v~~v~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d----~~v~~~d~~ 190 (325)
T d1pgua1 118 ISDISWDFEGRRLCVVGEGRD---NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD----GSVVFYQGP 190 (325)
T ss_dssp EEEEEECTTSSEEEEEECCSS---CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT----TEEEEEETT
T ss_pred EEEEEECCCCCccceeecccc---ceEEEEeecccccceeeeecccccccccccccccceEEEeecc----ccccccccc
Confidence 556789999999988753222 237888999887665432 33567789999998877765432 357777876
Q ss_pred CCCceeEEee-ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc---eEEeee-ecCCEEE
Q 004866 202 STDEDALLLE-ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL---AHCIVE-HHEGFLY 276 (726)
Q Consensus 202 t~~~~~lv~~-~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~---~~~~~~-~~g~~l~ 276 (726)
+.+....... .........+.|+||+..++++...+ ..|.++|+.++. ....+...... ..+.+. ++|+.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d--~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~ 267 (325)
T d1pgua1 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD--RKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFA 267 (325)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT--CCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSSSEEE
T ss_pred ccccceecccccCCCCccEEeeeccccceeccccccc--cceeeeeecccc-ccccccccccccccceeeeeccCCCEEE
Confidence 5432111211 11122334678999854444444332 347788887732 22333322221 223322 6677665
Q ss_pred EEe
Q 004866 277 LFT 279 (726)
Q Consensus 277 ~~t 279 (726)
..+
T Consensus 268 s~s 270 (325)
T d1pgua1 268 TVG 270 (325)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.56 E-value=4.3e-05 Score=75.62 Aligned_cols=111 Identities=10% Similarity=-0.002 Sum_probs=70.3
Q ss_pred CCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCCC
Q 004866 492 NQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEIV 570 (726)
Q Consensus 492 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 570 (726)
...|+++++||.-+.............+++ .++.|+++|++.... ..+..+. .. -...-+.+...+++|.++..+
T Consensus 68 ~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~--~~Y~~a~-~n-~~~Vg~~ia~~i~~l~~~~g~ 143 (337)
T d1rp1a2 68 TDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQ--TSYTQAA-NN-VRVVGAQVAQMLSMLSANYSY 143 (337)
T ss_dssp TTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHS--SCHHHHH-HH-HHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccC--cchHHHH-HH-HHHHHHHHHHHHHHHHHhcCC
Confidence 457999999997655443333344455555 569999999975322 1111111 00 011224445566777766667
Q ss_pred CCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCc
Q 004866 571 KEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPF 607 (726)
Q Consensus 571 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 607 (726)
++++|-|+|||+||.+++.+..+. ..+..++..-|.
T Consensus 144 ~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDPA 179 (337)
T d1rp1a2 144 SPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDPV 179 (337)
T ss_dssp CGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESCC
T ss_pred ChhheEEEeecHHHhhhHHHHHhh-ccccceeccCCC
Confidence 999999999999999999877754 455666655543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.49 E-value=0.05 Score=52.48 Aligned_cols=241 Identities=10% Similarity=-0.028 Sum_probs=131.0
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
++.|.++.+.|.|+ |..+. .|+.+|+++|+..........+.+.+.+||+ |++.. . ..|++++..+++.
T Consensus 22 gp~wd~~~~~l~wv-Di~~~---~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~-l~va~-~-----~gl~~~d~~tg~~ 90 (295)
T d2ghsa1 22 GPTFDPASGTAWWF-NILER---ELHELHLASGRKTVHALPFMGSALAKISDSK-QLIAS-D-----DGLFLRDTATGVL 90 (295)
T ss_dssp EEEEETTTTEEEEE-EGGGT---EEEEEETTTTEEEEEECSSCEEEEEEEETTE-EEEEE-T-----TEEEEEETTTCCE
T ss_pred CCeEECCCCEEEEE-ECCCC---EEEEEECCCCeEEEEECCCCcEEEEEecCCC-EEEEE-e-----CccEEeeccccee
Confidence 46799988888775 65554 4899999999765443344567788999985 44542 1 2699999888753
Q ss_pred eeEEeeecCCc--eEEEEEEcCCCcEEEEEEcCCC---ceEEEEEeCCCCCCCeEEeeccCC-ceEEeeeecCCEEEEEe
Q 004866 206 DALLLEESNEN--VYVNIRHTKDFHFVCVHTFSTT---SSKVFLINAADPFSGLTLIWECEG-LAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 206 ~~lv~~~~d~~--~~~~~~~s~Dg~~l~~~~~~~~---~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~~l~~~t 279 (726)
..+.-.+.+.. ..-++...|+|+..+-...... ...+|.++ + ++.+.+..... .....++++++.+|+..
T Consensus 91 ~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 91 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K--GKVTKLFADISIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T--TEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--C--CcEEEEeeccCCcceeeecCCCceEEEee
Confidence 33322222221 2345678999985433332221 23455554 3 33444433222 12345678888888865
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCC--CCCceEEe-ecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEecCCCCCCcce
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFP--SRTWESVF-IDDQGLVVEDVDFCK-THMALILREGRTYRLCSVSLPLPAGKGVV 355 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~-~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~~~~~~~ 355 (726)
... ..|++++++.... .......+ .........++..+. +.|++..-..| .|.+++.+. +
T Consensus 167 t~~--------~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g--~V~~~dp~G-~----- 230 (295)
T d2ghsa1 167 TKV--------NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG--AVDRYDTDG-N----- 230 (295)
T ss_dssp TTT--------CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT--EEEEECTTC-C-----
T ss_pred ccc--------ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC--ceEEecCCC-c-----
Confidence 432 3477776641111 11122222 223344567777765 46665554443 677888542 1
Q ss_pred eecccccccccCCCc-eeeeecCCCCcCCCcEEEEEEccCCC----------CceEEEEEC
Q 004866 356 HLKELHPHFLPLPKY-VSQIVPGPNYDYYSSTMRFAISSPVM----------PDAVVDYDL 405 (726)
Q Consensus 356 ~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ss~~~----------P~~~~~~d~ 405 (726)
.+ ..+.+|.. ..++..+ -.+.+++.++-.+... .+.||.+++
T Consensus 231 ~~-----~~i~lP~~~~T~~~FG---G~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~ 283 (295)
T d2ghsa1 231 HI-----ARYEVPGKQTTCPAFI---GPDASRLLVTSAREHLDDDAITANPQHGLTFELGI 283 (295)
T ss_dssp EE-----EEEECSCSBEEEEEEE---STTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred Ee-----eEecCCCCceEEEEEe---CCCCCEEEEEECCcCCChhHhccCCCCceEEEEcC
Confidence 11 34666643 2222211 1456677776544332 246776654
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.48 E-value=6.1e-05 Score=74.34 Aligned_cols=114 Identities=12% Similarity=-0.016 Sum_probs=73.4
Q ss_pred CCCccEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHHcCC
Q 004866 491 ENQNPGLLHGHGAYGELLDKRWRSELKSLLD-RGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCARFLIEKEI 569 (726)
Q Consensus 491 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 569 (726)
+...|+++++||.-+.............+++ ..+.|+++|+...... .+..+... . ...-+.+...+++|.....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~n-~-~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASYN-T-RVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHHH-H-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHHh-H-HHHHHHHHHHHHHHHHhcC
Confidence 3457999999997554443333445555555 5699999999754321 12111110 0 0111223335566665556
Q ss_pred CCCCcEEEEEecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 004866 570 VKEHKLAGWGYSAGGLLVAAAINCCPDLFRAVVLEVPFL 608 (726)
Q Consensus 570 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 608 (726)
+++++|-++|||.|+.+++.+..+.+.++..++..-|.-
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 799999999999999999999988777777777665543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.47 E-value=0.00077 Score=66.37 Aligned_cols=126 Identities=11% Similarity=-0.016 Sum_probs=78.4
Q ss_pred EEEEEECCCCceecccc----ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC-ceeEEeeecCC--ceEEEE
Q 004866 149 TLSVRNLNSGALCSKPQ----AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD-EDALLLEESNE--NVYVNI 221 (726)
Q Consensus 149 ~l~v~dl~tg~~~~~~~----~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~-~~~lv~~~~d~--~~~~~~ 221 (726)
+|.|+|+++++.+.... ......+++||||+.||.+.. ....|+.+|+.+++ ...+-...... .....+
T Consensus 12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~----~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v 87 (337)
T d1pbyb_ 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN----KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET----TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC----CCCeEEEEECCCCcEEEEEecCCCcccccceeeE
Confidence 59999999998765322 123568999999998877632 23479999998876 22222111110 011246
Q ss_pred EEcCCCcEEEEEEcCC---------CceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEe
Q 004866 222 RHTKDFHFVCVHTFST---------TSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFT 279 (726)
Q Consensus 222 ~~s~Dg~~l~~~~~~~---------~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t 279 (726)
.+||||+++++..... ....+.++|..++. ....+..........++++|+.++...
T Consensus 88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEeccccCCceEEEEcCCCCEEEEEc
Confidence 8899999998876432 13567888887732 122233233333456778888887654
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.40 E-value=0.00025 Score=68.21 Aligned_cols=101 Identities=17% Similarity=0.033 Sum_probs=66.5
Q ss_pred CccEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHHcCCCC
Q 004866 493 QNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCA-RFLIEKEIVK 571 (726)
Q Consensus 493 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d 571 (726)
..|.|+++||.........|......|.. .+.|+.++.+|.+.. . ....+++++.+.+ +.+.+. ..
T Consensus 41 ~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG~~~~-e---------~~~~s~~~~a~~~~~~i~~~--~~ 107 (255)
T d1mo2a_ 41 GEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPGYEEG-E---------PLPSSMAAVAAVQADAVIRT--QG 107 (255)
T ss_dssp CSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTTSSTT-C---------CEESSHHHHHHHHHHHHHHT--TS
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCcCCC-C---------CCCCCHHHHHHHHHHHHHHh--CC
Confidence 45889999975433333567777777655 489999999998642 1 1224677776654 344332 23
Q ss_pred CCcEEEEEecccHHHHHHHHHcC---CCceeEEEEeCC
Q 004866 572 EHKLAGWGYSAGGLLVAAAINCC---PDLFRAVVLEVP 606 (726)
Q Consensus 572 ~~ri~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p 606 (726)
..++.|+|||+||.++..++.+. ......+++..+
T Consensus 108 ~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~ 145 (255)
T d1mo2a_ 108 DKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDV 145 (255)
T ss_dssp SSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEEC
T ss_pred CCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECC
Confidence 46799999999999999888654 334566665443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.38 E-value=0.0021 Score=63.35 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=41.6
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccc--------cccceeEEecCCCEEEEEEe
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQA--------VRVSNIAWAKDGQALIYVVT 186 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~--------~~~~~~~WspDg~~l~y~~~ 186 (726)
...+.|||||++|..+. ..++ .|+++|+.+++.+..... .....++|+|||+.+|....
T Consensus 42 p~~l~~spDG~~l~v~~-~~~~---~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 42 PGTAMMAPDNRTAYVLN-NHYG---DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp SCEEEECTTSSEEEEEE-TTTT---EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred cceEEECCCCCEEEEEE-CCCC---cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence 34678999999986553 3332 599999999976642211 13457899999999987754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.33 E-value=0.00096 Score=68.60 Aligned_cols=106 Identities=8% Similarity=0.009 Sum_probs=65.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCC---------
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNK--------- 190 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~--------- 190 (726)
.++....+|||++| |+.+..++ .|.++|+++++...... .....+++++|||+++|.....+..
T Consensus 73 ~~s~t~gtpDGr~l-fV~d~~~~---rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 73 HISMTDGRYDGKYL-FINDKANT---RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp EEEEETTEEEEEEE-EEEETTTT---EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred CcceecccCCCCEE-EEEcCCCC---EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 34444568999997 55565554 58999999998766432 2345678999999988776433211
Q ss_pred --CC---ceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 191 --RP---YQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 191 --~~---~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
.. ..+-.+|..+.. ..++.. ..+. ..+.++|||+++++++..
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p---~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIV-DGNL---DNTDADYTGKYATSTCYN 196 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEE-SSCC---CCEEECSSSSEEEEEESC
T ss_pred cccccccceEEeecCccceeeEEEec-CCCc---cceEECCCCCEEEEEecC
Confidence 00 112335555544 212221 1121 246789999999988754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.25 E-value=0.087 Score=49.77 Aligned_cols=198 Identities=10% Similarity=0.009 Sum_probs=120.4
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+.++.+-+..++|-|+ |...+ .|+..+++++....+.. .....+++...-++.||++.. ....|.+.++.
T Consensus 38 ~~~ld~D~~~~~iyws-d~~~~---~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~----~~~~I~~~~~d 109 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWT-DISEP---SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS----QLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEETTTTEEEEE-ETTTT---EEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET----TTTEEEEEETT
T ss_pred EEEEEEEeCCCEEEEE-ECCCC---eEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc----CCCEEEEEecC
Confidence 3345677778888554 55543 48899998876544322 223445555555778998742 34588888987
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-Cc-eEEeeeecCCEEEEEe
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-GL-AHCIVEHHEGFLYLFT 279 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~-~~~~~~~~g~~l~~~t 279 (726)
......++...... ..++.+.|...+|+++........|+.+++++. ..+.+.... .. ....+++.++.||+..
T Consensus 110 g~~~~~l~~~~l~~--p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~--~~~~i~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 110 GTQRRVLFDTGLVN--PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp SCSCEEEECSSCSS--EEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEecccccC--CcEEEEecccCcEEEeecCCCCcEEEEecCCCC--CceeeeeecccccceEEEeecCcEEEEEe
Confidence 65443443332222 246778899999998876555567999999873 233333222 21 2345667788888864
Q ss_pred cCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 280 DAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
... ..|.+++.+ . ..-+.++.. .. ...++.+++++||++-.. ...|.+++..++
T Consensus 186 ~~~--------~~I~~~~~~-g---~~~~~v~~~-~~-~P~~lav~~~~lYwtd~~--~~~I~~~~~~~g 239 (263)
T d1npea_ 186 AGT--------HRAECLNPA-Q---PGRRKVLEG-LQ-YPFAVTSYGKNLYYTDWK--TNSVIAMDLAIS 239 (263)
T ss_dssp TTT--------TEEEEEETT-E---EEEEEEEEC-CC-SEEEEEEETTEEEEEETT--TTEEEEEETTTT
T ss_pred CCC--------CEEEEEECC-C---CCeEEEECC-CC-CcEEEEEECCEEEEEECC--CCEEEEEECCCC
Confidence 322 357788876 2 222334432 22 245788888988877653 346888887543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=0.052 Score=52.03 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=65.9
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceec-cc----cccccceeEEecCCCEEEEEEecCCCCCceEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCS-KP----QAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~-~~----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~ 197 (726)
.+..++|||||++||-++ .+| .|+|||+.++.... .. ....+..++|+|++..++++...+ ..|+.
T Consensus 13 ~I~~l~fsp~~~~L~s~s-~Dg----~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d----~~v~~ 83 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITS-WDG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----GEILK 83 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE-TTS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----SCEEE
T ss_pred CEEEEEEeCCCCEEEEEE-CCC----eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc----cceee
Confidence 477889999999998874 444 58999987764322 11 133567789999987777765432 35777
Q ss_pred EEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 198 SIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 198 ~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
+++........... ..........+.+++..++..+.. ..+.++|+..
T Consensus 84 w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~wd~~~ 131 (342)
T d1yfqa_ 84 VDLIGSPSFQALTN-NEANLGICRICKYGDDKLIAASWD---GLIEVIDPRN 131 (342)
T ss_dssp ECSSSSSSEEECBS-CCCCSCEEEEEEETTTEEEEEETT---SEEEEECHHH
T ss_pred eecccccccccccc-cccccccccccccccccccccccc---cccceeeccc
Confidence 77766542222211 111111223345566665544432 2455556543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.12 E-value=0.0076 Score=57.73 Aligned_cols=141 Identities=7% Similarity=0.046 Sum_probs=83.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEc
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l 200 (726)
.+..++|||||++||-+. .+| .|.|||+.+++.+.... ...+..+.|+|++..++....+. .+...+.
T Consensus 19 ~I~~l~~sp~~~~l~s~s-~Dg----~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 88 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSAS-EDA----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM-----TIKLWDF 88 (317)
T ss_dssp CEEEEEECSSSSEEEEEE-SSS----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS-----CCCEEET
T ss_pred CeEEEEEcCCCCEEEEEe-CCC----eEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc-----ccccccc
Confidence 577889999999987654 445 49999999998665322 34567899999999887764332 2333444
Q ss_pred CCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeeeecCCEEEEEe
Q 004866 201 GSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVEHHEGFLYLFT 279 (726)
Q Consensus 201 ~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t 279 (726)
..... ...+... ........++++++.++....+ ..+.++|+.++. ....+....... ...+++++..|+..+
T Consensus 89 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (317)
T d1vyhc1 89 QGFEC-IRTMHGH-DHNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCS 162 (317)
T ss_dssp TSSCE-EECCCCC-SSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccc-ccccccc-cccceeeeccCCCceEEeeccC---cceeEeecccce-eeeEEccCCCcceeeecccCCCEEEEEe
Confidence 33321 1111111 1223456789999998765543 356777887642 223333222222 233456666555443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.061 Score=52.38 Aligned_cols=200 Identities=10% Similarity=0.030 Sum_probs=95.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc---cc--ccccceeEEecCC--CEEEEEEecCCCCCceEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK---PQ--AVRVSNIAWAKDG--QALIYVVTDQNKRPYQIYC 197 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~---~~--~~~~~~~~WspDg--~~l~y~~~~~~~~~~~l~~ 197 (726)
..++|+|+|+.|||.. |+ ...|+.+|....+.... .. ...+..++|+|++ +.| .+...+ ..|.+
T Consensus 21 t~l~~~~~~~~la~~~---~~-~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~l-asgs~D----g~i~i 91 (325)
T d1pgua1 21 THLSYDPTTNAIAYPC---GK-SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYL-CSGDES----GKVIV 91 (325)
T ss_dssp CCCEEETTTTEEEEEE---TT-EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEE-EEEETT----SEEEE
T ss_pred EEEEECCCCCEEEEEe---CC-CEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEE-EEEeCC----CCEEE
Confidence 4567999999999974 22 23355555443322211 11 1246679999854 443 332221 25656
Q ss_pred EEcCCCC-ceeEE------eeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCce-EEeee
Q 004866 198 SIIGSTD-EDALL------LEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLA-HCIVE 269 (726)
Q Consensus 198 ~~l~t~~-~~~lv------~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~ 269 (726)
+++..+. ...+- +.....+ ...+.|++||++|+..+.... ..+.+.+.+++. ....+......+ ...+.
T Consensus 92 Wd~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~ 168 (325)
T d1pgua1 92 WGWTFDKESNSVEVNVKSEFQVLAGP-ISDISWDFEGRRLCVVGEGRD-NFGVFISWDSGN-SLGEVSGHSQRINACHLK 168 (325)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSC-EEEEEECTTSSEEEEEECCSS-CSEEEEETTTCC-EEEECCSCSSCEEEEEEC
T ss_pred eeecCCcceeeeecccccccccccCc-EEEEEECCCCCccceeecccc-ceEEEEeecccc-cceeeeeccccccccccc
Confidence 6654332 11111 1111112 236789999999987665332 234555555531 223332222222 23456
Q ss_pred ecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEee-cCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEec
Q 004866 270 HHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFI-DDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 270 ~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l 346 (726)
+++..+++....++ .+...+.. . ......+.. ......+..+.+. ...++++...+|. |.++|+
T Consensus 169 ~~~~~~~~~~~~d~--------~v~~~d~~-~--~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~--i~iwd~ 235 (325)
T d1pgua1 169 QSRPMRSMTVGDDG--------SVVFYQGP-P--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK--ISCFDG 235 (325)
T ss_dssp SSSSCEEEEEETTT--------EEEEEETT-T--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC--EEEEET
T ss_pred ccccceEEEeeccc--------cccccccc-c--cccceecccccCCCCccEEeeeccccceeccccccccc--eeeeee
Confidence 67766555444332 23333432 1 000111111 1122334555443 4566777777765 555676
Q ss_pred CCC
Q 004866 347 PLP 349 (726)
Q Consensus 347 ~~~ 349 (726)
.++
T Consensus 236 ~~~ 238 (325)
T d1pgua1 236 KSG 238 (325)
T ss_dssp TTC
T ss_pred ccc
Confidence 543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.07 E-value=0.059 Score=52.52 Aligned_cols=243 Identities=9% Similarity=0.028 Sum_probs=122.6
Q ss_pred eeceeeCCCCCEEEEEEeCCCC----cEEEEEEEECCCCceecccc--c----cccceeEEecCCCEEEEEEecCCCCCc
Q 004866 124 EELSEVSPDHKFLAYTMYDKDN----DYFTLSVRNLNSGALCSKPQ--A----VRVSNIAWAKDGQALIYVVTDQNKRPY 193 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~----e~~~l~v~dl~tg~~~~~~~--~----~~~~~~~WspDg~~l~y~~~~~~~~~~ 193 (726)
..+++|.|||+... + +..+. ..-+|+.+|++++....... . .....+.+.+||+.||.... ..
T Consensus 20 ~EGpa~d~dG~ly~-~-~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-----~~ 92 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYI-V-APEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-----RL 92 (314)
T ss_dssp CEEEEECTTSCEEE-E-ETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-----TT
T ss_pred CeEeEEeCCCCEEE-E-ECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-----CC
Confidence 34578999998433 2 33221 01258999999987544321 1 12346899999987776531 23
Q ss_pred eEEEEEcCCCCceeEEeeecCCc-e--EEEEEEcCCCcEEEEEEcCC-------------CceEEEEEeCCCCCCCeEEe
Q 004866 194 QIYCSIIGSTDEDALLLEESNEN-V--YVNIRHTKDFHFVCVHTFST-------------TSSKVFLINAADPFSGLTLI 257 (726)
Q Consensus 194 ~l~~~~l~t~~~~~lv~~~~d~~-~--~~~~~~s~Dg~~l~~~~~~~-------------~~~~l~~~d~~~~~~~~~~l 257 (726)
.|++.+..+.... ++....+.. + .-++.+.+||+ |+++.... ....||.++.++ +...+
T Consensus 93 ~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg---~~~~~ 167 (314)
T d1pjxa_ 93 GLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG---QMIQV 167 (314)
T ss_dssp EEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS---CEEEE
T ss_pred eEEEEeCCCcEEE-EEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC---ceeEe
Confidence 6888887654221 111111211 1 12467889996 45554221 124688888754 33333
Q ss_pred eccCC-ceEEeeeecCC----EEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec---CCCceEEEEeeeC-CE
Q 004866 258 WECEG-LAHCIVEHHEG----FLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID---DQGLVVEDVDFCK-TH 328 (726)
Q Consensus 258 ~~~~~-~~~~~~~~~g~----~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~---~~~~~l~~~~~~~-~~ 328 (726)
..... .....++++++ .||+ ++.. +.+|++++++ ....-....++.. .......++.+.. +.
T Consensus 168 ~~~~~~pNGi~~~~d~d~~~~~lyv-~d~~-------~~~i~~~d~~-~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 168 DTAFQFPNGIAVRHMNDGRPYQLIV-AETP-------TKKLWSYDIK-GPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEE-EETT-------TTEEEEEEEE-ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred eCCcceeeeeEECCCCCcceeEEEE-Eeec-------ccceEEeecc-CccccceeeEEEEccccccccceeeEEecCCc
Confidence 32211 11233455543 3444 3332 2457787765 2222122222211 1223456777764 56
Q ss_pred EEEEEEeCCeeEEEEEecCCCCCCcceeecccccccccCCCc-eeeeecCCCCcCCCcEEEEEEccCCCCceEEEEECC
Q 004866 329 MALILREGRTYRLCSVSLPLPAGKGVVHLKELHPHFLPLPKY-VSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDYDLS 406 (726)
Q Consensus 329 lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 406 (726)
|++.... ..+|++++.+++. + ...+..|.. ..++. +..+++++.++-+. -..|+++++.
T Consensus 239 lyVa~~~--~g~I~~~dp~~g~------~----~~~i~~p~~~~t~~a----fg~d~~~lyVt~~~---~g~i~~~~~~ 298 (314)
T d1pjxa_ 239 LLVANWG--SSHIEVFGPDGGQ------P----KMRIRCPFEKPSNLH----FKPQTKTIFVTEHE---NNAVWKFEWQ 298 (314)
T ss_dssp EEEEEET--TTEEEEECTTCBS------C----SEEEECSSSCEEEEE----ECTTSSEEEEEETT---TTEEEEEECS
T ss_pred EEEEEcC--CCEEEEEeCCCCE------E----EEEEECCCCCEEEEE----EeCCCCEEEEEECC---CCcEEEEECC
Confidence 7665443 3578888865432 1 112444432 22232 23456666655432 2477777764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.071 Score=52.83 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=40.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEE
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 184 (726)
.+..++|||||++|+... .+| .|.++|..+++...... ...+..+.|++++..++..
T Consensus 123 ~V~~l~~s~~~~~l~s~~-~dg----~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 181 (388)
T d1erja_ 123 YIRSVCFSPDGKFLATGA-EDR----LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 181 (388)
T ss_dssp BEEEEEECTTSSEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEECCCCCcceecc-ccc----cccccccccccccccccccccccccccccccccccccc
Confidence 356788999999998764 445 38999999887654322 2345567788877766654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.98 E-value=0.011 Score=57.45 Aligned_cols=138 Identities=9% Similarity=0.002 Sum_probs=83.4
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
...+.+++..++... ..+ .|.++|+.+++.+.... ...+..++|+||++.|+....+ ..|+.+++...
T Consensus 189 ~~~~~~~~~~~~~~~-~d~----~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~ 258 (340)
T d1tbga_ 189 SLSLAPDTRLFVSGA-CDA----SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRAD 258 (340)
T ss_dssp EEEECTTSSEEEEEE-TTT----EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred eeccccccceeEEee-cCc----eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeeccc
Confidence 345778888776553 334 48999999997665322 3456778999999987765432 35778888765
Q ss_pred CceeEEeeecCC-ceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceE-EeeeecCCEEEEE
Q 004866 204 DEDALLLEESNE-NVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAH-CIVEHHEGFLYLF 278 (726)
Q Consensus 204 ~~~~lv~~~~d~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~ 278 (726)
.. ...+..... .....+.++|||++|+..+.. ..|+++|+.++. ....+......+. ..+++++..|+..
T Consensus 259 ~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~-~~~~~~~H~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 259 QE-LMTYSHDNIICGITSVSFSKSGRLLLAGYDD---FNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EE-EEEECCTTCCSCEEEEEECSSSCEEEEEETT---SCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred cc-ccccccccccCceEEEEECCCCCEEEEEECC---CEEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 32 222222221 223467899999998776543 358888987732 2233332233322 3456677655443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.92 E-value=0.026 Score=56.55 Aligned_cols=102 Identities=11% Similarity=-0.031 Sum_probs=57.6
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECC-CCceecccc------ccccceeEEecCCCEEEEEEecCCCCCceEEEE
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLN-SGALCSKPQ------AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCS 198 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~-tg~~~~~~~------~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~ 198 (726)
.+.+||||++|.. .+. |.+ .|++++.. +|....... ......++++|||+.+|.+. . ....|..+
T Consensus 149 ~v~~sPdG~~l~v-~d~-g~d--~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~-e---~~~~V~v~ 220 (365)
T d1jofa_ 149 GMVFDPTETYLYS-ADL-TAN--KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM-E---AGNRICEY 220 (365)
T ss_dssp EEEECTTSSEEEE-EET-TTT--EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE-T---TTTEEEEE
T ss_pred EEEECCCCCEEEE-eeC-CCC--EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEec-c---CCCEEEEE
Confidence 5679999999855 454 433 35565543 343332111 12345689999999777663 2 23477777
Q ss_pred EcCCCC-ceeEEeee-c---------------CCceEEEEEEcCCCcEEEEEEc
Q 004866 199 IIGSTD-EDALLLEE-S---------------NENVYVNIRHTKDFHFVCVHTF 235 (726)
Q Consensus 199 ~l~t~~-~~~lv~~~-~---------------d~~~~~~~~~s~Dg~~l~~~~~ 235 (726)
++.+.. ........ + ....-..+.+||||++|++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence 776543 11111100 0 0011235788999999987654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.063 Score=51.89 Aligned_cols=185 Identities=10% Similarity=-0.033 Sum_probs=103.4
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
.+.++|+.++... ..+ .|.++|+.+++.+.... ........|+|+++.++....+ ..|+++++.++..
T Consensus 166 ~~~~~~~~~~~~~-~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~ 235 (355)
T d1nexb2 166 TVSGHGNIVVSGS-YDN----TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGEL 235 (355)
T ss_dssp EEEEETTEEEEEE-TTS----CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTCCE
T ss_pred ccccccceeeeec-ccc----eeeeeecccccceeeeeccccccccccccccceeeeccccc-----ceEEeeecccccc
Confidence 4677888887764 333 38899999987664322 3355678999999988776533 3578888877642
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCc-eE-EeeeecCCEEEEEecCcc
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGL-AH-CIVEHHEGFLYLFTDAAK 283 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~-~~~~~~g~~l~~~t~~~~ 283 (726)
...+...... ...+.+ ++++|+..+.+ ..|.++|+.+.. . .+...... .. ..+.+++. ++.... ++
T Consensus 236 -~~~~~~h~~~-v~~~~~--~~~~l~~~~~d---g~i~iwd~~~~~--~-~~~~~~~~~~~~~~~~~~~~-~l~~g~-d~ 303 (355)
T d1nexb2 236 -MYTLQGHTAL-VGLLRL--SDKFLVSAAAD---GSIRGWDANDYS--R-KFSYHHTNLSAITTFYVSDN-ILVSGS-EN 303 (355)
T ss_dssp -EEEECCCSSC-CCEEEE--CSSEEEEECTT---SEEEEEETTTCC--E-EEEEECTTCCCCCEEEECSS-EEEEEE-TT
T ss_pred -cccccccccc-cccccc--ccceeeeeecc---cccccccccccc--e-ecccccCCceEEEEEcCCCC-EEEEEe-CC
Confidence 1122221222 123444 56776654432 368888987742 2 22221211 11 12334444 444332 21
Q ss_pred cCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeCCEEEEEEEeCCeeEEEEEec
Q 004866 284 EGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCKTHMALILREGRTYRLCSVSL 346 (726)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l 346 (726)
.|...++. +.. .....+ ......+..+.+.++.+++....+|...|+++|.
T Consensus 304 --------~i~vwd~~-tg~--~~~~~~-~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 304 --------QFNIYNLR-SGK--LVHANI-LKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp --------EEEEEETT-TCC--BCCSCT-TTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEC
T ss_pred --------EEEEEECC-CCC--EEEEEe-cCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEeC
Confidence 24445554 211 111111 1223456677778888888888899888888764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.009 Score=60.49 Aligned_cols=115 Identities=10% Similarity=0.108 Sum_probs=71.2
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--------ccccceeEEecCCCEEEEEEecCCCCCceEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--------AVRVSNIAWAKDGQALIYVVTDQNKRPYQIY 196 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--------~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~ 196 (726)
..+.||||| +|| +...+| .|+|||+.+++.+.... ...+..++|+|||+.|+-...|.. ...|.
T Consensus 188 ~~v~~s~dg-~la-sgs~Dg----~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t--~~~i~ 259 (393)
T d1sq9a_ 188 TSVDISERG-LIA-TGFNNG----TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--FGCIT 259 (393)
T ss_dssp CEEEECTTS-EEE-EECTTS----EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--EEEEE
T ss_pred EEEEECCCC-EEE-EEeCCC----cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC--cceee
Confidence 346799998 554 333334 59999999987653211 224567899999998877655432 23466
Q ss_pred EEEcCCCC-ceeEEee----------ecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCC
Q 004866 197 CSIIGSTD-EDALLLE----------ESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADP 250 (726)
Q Consensus 197 ~~~l~t~~-~~~lv~~----------~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~ 250 (726)
++++.++. ...+... .........++|+|||++|+-.+. ...|.++|++++
T Consensus 260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~---D~~v~vWd~~~g 321 (393)
T d1sq9a_ 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW---DGKLRFWDVKTK 321 (393)
T ss_dssp EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTT
T ss_pred ecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC---CCEEEEEECCCC
Confidence 77887664 1111100 001122356899999998864443 246888898874
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.73 E-value=0.022 Score=57.06 Aligned_cols=119 Identities=9% Similarity=0.090 Sum_probs=64.8
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecc--------cc-------------ccccceeEEecCCCEEEE
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSK--------PQ-------------AVRVSNIAWAKDGQALIY 183 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~--------~~-------------~~~~~~~~WspDg~~l~y 183 (726)
..+.++|||+++ |+....++ +|.+++++++..... .. ......+.++|||+.||.
T Consensus 196 r~i~f~pdg~~~-yv~~e~~~---~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 196 RWVAMHPTGNYL-YALMEAGN---RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp EEEEECTTSSEE-EEEETTTT---EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred EEEEECCCCceE-EEeccCCC---EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence 346799999965 55555444 477888776543211 00 012345789999999987
Q ss_pred EEecC-CCCCceEEEEEcCCCC--ceeEEeee--cCCceEEEEEEcC-CCcEEEEEEcCCCceEEEEEeC
Q 004866 184 VVTDQ-NKRPYQIYCSIIGSTD--EDALLLEE--SNENVYVNIRHTK-DFHFVCVHTFSTTSSKVFLINA 247 (726)
Q Consensus 184 ~~~~~-~~~~~~l~~~~l~t~~--~~~lv~~~--~d~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~ 247 (726)
+.... ......|...+++... ........ .....-.++.++| ||++|++.......-.+|.++-
T Consensus 272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 74432 2223346566665432 11111111 1111112456787 8999987765544445555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.50 E-value=0.033 Score=56.76 Aligned_cols=63 Identities=8% Similarity=-0.085 Sum_probs=40.2
Q ss_pred ceeeCCCCCEEEEEEeCCC--------------CcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecC
Q 004866 126 LSEVSPDHKFLAYTMYDKD--------------NDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQ 188 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g--------------~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~ 188 (726)
++++||||+++-+...... .....+..+|.++.+...... ......+.|+|||+++|.+..+.
T Consensus 120 gi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns 197 (441)
T d1qnia2 120 GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS 197 (441)
T ss_dssp EEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred ceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCC
Confidence 4579999996432221111 112345668988887654322 44567899999999999887654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.38 Score=45.61 Aligned_cols=45 Identities=13% Similarity=-0.022 Sum_probs=31.4
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecC
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKD 177 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspD 177 (726)
.+++||++||-+ ..+| .|+|||+.+|+.+.... ...+..+.|+|+
T Consensus 22 ~~~~~g~~l~sg-s~Dg----~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~ 68 (342)
T d2ovrb2 22 CLQFCGNRIVSG-SDDN----TLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68 (342)
T ss_dssp EEEEETTEEEEE-ETTS----CEEEEETTTCCEEEECCCCSSCEEEEEEETT
T ss_pred EEEECCCEEEEE-eCCC----eEEEEECCCCCEEEEEeCCCCCEEEEEeCCC
Confidence 378899998755 4455 39999999998765322 335566788764
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.4 Score=44.93 Aligned_cols=175 Identities=7% Similarity=0.020 Sum_probs=101.3
Q ss_pred EEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC----ceeEEeeecCCceEEEEEEc
Q 004866 150 LSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD----EDALLLEESNENVYVNIRHT 224 (726)
Q Consensus 150 l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~----~~~lv~~~~d~~~~~~~~~s 224 (726)
|+.+++++.+...+.. ......+.|.+..+.||++... ...|++.++.... ...++....... .++++.
T Consensus 12 I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~----~~~I~~~~l~~~~~~~~~~~~~~~~~~~p--~glAvD 85 (266)
T d1ijqa1 12 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRDIQAP--DGLAVD 85 (266)
T ss_dssp EEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT----TTEEEEEEC--------CEEEECSSCSCC--CEEEEE
T ss_pred EEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECC----CCEEEEEEecCCCCCcceEEEEeCCCCCc--ceEEEe
Confidence 8889999877555432 3345578899989999997422 3478888775321 222222211222 245666
Q ss_pred CCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-CCc-eEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCC
Q 004866 225 KDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-EGL-AHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASF 302 (726)
Q Consensus 225 ~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~-~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~ 302 (726)
.-++.|++.... ...|.++++++. ..+.+... ... ....+++..+.+|+.. .+. ..+|++++++ .
T Consensus 86 ~~~~~lY~~d~~--~~~I~v~~~~g~--~~~~~~~~~~~~P~~l~vd~~~g~ly~~~-~~~------~~~I~r~~~d-G- 152 (266)
T d1ijqa1 86 WIHSNIYWTDSV--LGTVSVADTKGV--KRKTLFRENGSKPRAIVVDPVHGFMYWTD-WGT------PAKIKKGGLN-G- 152 (266)
T ss_dssp TTTTEEEEEETT--TTEEEEEETTSS--SEEEEEECTTCCEEEEEEETTTTEEEEEE-CSS------SCEEEEEETT-S-
T ss_pred eccceEEEEecC--CCEEEeEecCCc--eEEEEEcCCCCCcceEEEEcccCeEEEec-cCC------CcceeEeccC-C-
Confidence 678888886543 357888898763 33333332 222 2334566677777764 221 3579999987 2
Q ss_pred CCCCceEEeecCCCceEEEEeee--CCEEEEEEEeCCeeEEEEEecCC
Q 004866 303 PSRTWESVFIDDQGLVVEDVDFC--KTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 303 ~~~~~~~v~~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
...+.++.. .-....++.+. +++||+.- .+...|..++++.
T Consensus 153 --s~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d--~~~~~I~~~~~dG 195 (266)
T d1ijqa1 153 --VDIYSLVTE-NIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNG 195 (266)
T ss_dssp --CCEEEEECS-SCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTS
T ss_pred --Cceeccccc-ccceeeEEEeeccccEEEEec--CCcCEEEEEECCC
Confidence 233444432 22345566665 57888774 3345788888864
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.044 Score=51.94 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCC
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTD 204 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~ 204 (726)
.++|+++.++++....+ .+.++++.+.+...... ......++|+|||+.|+....+ ..|+++++.++.
T Consensus 125 ~~~~~~~~~~v~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~~~~~ 195 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGN----TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM-----GKILLYDLQSRE 195 (287)
T ss_dssp EEEECSSEEEEEETTTS----CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred eeeccCcceeeeccccc----eeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc-----ccccceeecccc
Confidence 57899999988764333 37888987654433211 3356789999999988766432 368888887653
Q ss_pred ceeEEeeecCCceEEEEEEcCCCc----------EEEEEEcCCCceEEEEEeCCCCC
Q 004866 205 EDALLLEESNENVYVNIRHTKDFH----------FVCVHTFSTTSSKVFLINAADPF 251 (726)
Q Consensus 205 ~~~lv~~~~d~~~~~~~~~s~Dg~----------~l~~~~~~~~~~~l~~~d~~~~~ 251 (726)
.....+..... ....+.|+|+++ +|+-.+. ...|+++|+..+.
T Consensus 196 ~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~---D~~i~iw~~~~~~ 248 (287)
T d1pgua2 196 VKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSL---DTNIFIYSVKRPM 248 (287)
T ss_dssp EEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEET---TSCEEEEESSCTT
T ss_pred ccccccccccc-ccceeeecccccccccccCCCCeeEeecC---CCeEEEEECCCCC
Confidence 11111111111 123466776654 4332222 2458888887643
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.19 E-value=0.37 Score=42.52 Aligned_cols=230 Identities=10% Similarity=0.070 Sum_probs=127.7
Q ss_pred CCCCCEEEEEEeC-CCCcEEEEEEEECC-CCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCcee
Q 004866 130 SPDHKFLAYTMYD-KDNDYFTLSVRNLN-SGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDA 207 (726)
Q Consensus 130 SPDG~~la~~~~~-~g~e~~~l~v~dl~-tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~ 207 (726)
-+.=.+|.|+.|. .|.|+..||+.++. -|+..++.......-++-.-|++.++|+-...+ .++++-+..++-..
T Consensus 63 k~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gased----~~~LYviegGklrk 138 (313)
T d2hu7a1 63 HYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATED----RVALYALDGGGLRE 138 (313)
T ss_dssp CTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECSS----CEEEEEEETTEEEE
T ss_pred ccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccCC----ceEEEEEeCCceee
Confidence 3444568888774 57889999999997 255555433211223344458899999865332 34444444444333
Q ss_pred EEeeecCCceEEEEEEcCCCcEEEEEE-cCCCceEEEEEeCCCCCCCeEEeeccCCceEE-eeeecCCEEEEEecCcccC
Q 004866 208 LLLEESNENVYVNIRHTKDFHFVCVHT-FSTTSSKVFLINAADPFSGLTLIWECEGLAHC-IVEHHEGFLYLFTDAAKEG 285 (726)
Q Consensus 208 lv~~~~d~~~~~~~~~s~Dg~~l~~~~-~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~ 285 (726)
+. .-+.-.|..++ .|++|+=.. -.+....+++.|+.+ +.++.+++.++.+.. +..+ |..+ .++....
T Consensus 139 L~-~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~S--G~lri~tpkeGS~~~ay~~~-gnKV--~sdyEt~- 207 (313)
T d2hu7a1 139 LA-RLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSS--GGLRVFDSGEGSFSSASISP-GMKV--TAGLETA- 207 (313)
T ss_dssp EE-EESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTT--EEEEEECCSSEEEEEEEECT-TSCE--EEEEEES-
T ss_pred ec-cCCCcceEEec----cCCeEEEEeeecCCcceEEEEeccc--CCEEEecCCCCcccceeEcc-Ccee--eeccCCC-
Confidence 32 22322332222 466765333 233445689999977 567777776654332 3333 3333 3332211
Q ss_pred CCCCCeEEEEeeCCCCCCCCCceEEeecCCC------ceEEEEeee-CCEEEEEEEeCCeeEEEEEecCCCCCCcceeec
Q 004866 286 QEADNHYLLRCPVDASFPSRTWESVFIDDQG------LVVEDVDFC-KTHMALILREGRTYRLCSVSLPLPAGKGVVHLK 358 (726)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~------~~l~~~~~~-~~~lv~~~~~~g~~~l~~~~l~~~~~~~~~~~~ 358 (726)
...++..+|+. .++.+.+-.++.+ ..|..+... ++.|++..+++|.+.|+.- +
T Consensus 208 ---gEsywit~D~~----s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n------G------- 267 (313)
T d2hu7a1 208 ---REARLVTVDPR----DGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID------G------- 267 (313)
T ss_dssp ---SCEEEEEECTT----TCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET------T-------
T ss_pred ---CceEEEEEecc----cCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheeec------c-------
Confidence 13445577765 3445544223322 334333333 4679899999999988641 1
Q ss_pred ccccccccCCCceeeeecCCCCcCCCcEEEEEEccCCCCceEEEE
Q 004866 359 ELHPHFLPLPKYVSQIVPGPNYDYYSSTMRFAISSPVMPDAVVDY 403 (726)
Q Consensus 359 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~ 403 (726)
..+..|.+.-+ +. ..=++.+.|+.||..+|+.+..+
T Consensus 268 ----k~in~p~G~~~---ga--t~i~~~iyfshsSL~tP~kI~~~ 303 (313)
T d2hu7a1 268 ----ERVEAPQGNHG---RV--VLWRGKLVTSHTSLSTPPRIVSL 303 (313)
T ss_dssp ----EEECCCSSEEE---EE--EEETTEEEEEEEETTEEEEEEEE
T ss_pred ----eEecCCCCccc---ce--EEECCEEEEeecccCCCceeEEc
Confidence 12444443211 10 12256799999999999999865
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.95 E-value=0.64 Score=43.22 Aligned_cols=188 Identities=12% Similarity=0.138 Sum_probs=97.3
Q ss_pred eeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcC
Q 004866 124 EELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIG 201 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~ 201 (726)
+....++||++.++... .++ .+.++|+.+++...... ......+.|+||++.|+....+ ..|..+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~-~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~v~~~~~~ 173 (317)
T d1vyhc1 104 VSSVSIMPNGDHIVSAS-RDK----TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-----QTVRVWVVA 173 (317)
T ss_dssp EEEEEECSSSSEEEEEE-TTS----EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETT
T ss_pred ceeeeccCCCceEEeec-cCc----ceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC-----CeEEEEeec
Confidence 44567999999987654 344 48899999987655322 3355678999999987665432 257777776
Q ss_pred CCCceeEEeeecCCceEEEEEEcCCC--------------------cEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC
Q 004866 202 STDEDALLLEESNENVYVNIRHTKDF--------------------HFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE 261 (726)
Q Consensus 202 t~~~~~lv~~~~d~~~~~~~~~s~Dg--------------------~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 261 (726)
+.... ..+..... ....+.++|++ ..++..+. ...+.++|+.++. ....+....
T Consensus 174 ~~~~~-~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~-~~~~~~~~~ 247 (317)
T d1vyhc1 174 TKECK-AELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR---DKTIKMWDVSTGM-CLMTLVGHD 247 (317)
T ss_dssp TCCEE-EEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---TSEEEEEETTTTE-EEEEEECCS
T ss_pred cceee-EEEecCCC-CceEEEEeeccccceeeccccceeeeeccCCceeEeccC---CCEEEEEECCCCc-EEEEEeCCC
Confidence 55311 11111111 11223444443 33332222 2357778887632 222333223
Q ss_pred CceE-EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCee
Q 004866 262 GLAH-CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTY 339 (726)
Q Consensus 262 ~~~~-~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~ 339 (726)
..+. ..++++++.|+..+. + ..|...++. + ......+-.+ ...+..+.+.. +.++++...+|.-
T Consensus 248 ~~v~~~~~~~~~~~l~s~~~-d--------g~i~iwd~~-~--~~~~~~~~~h--~~~V~~~~~s~~~~~l~s~s~Dg~i 313 (317)
T d1vyhc1 248 NWVRGVLFHSGGKFILSCAD-D--------KTLRVWDYK-N--KRCMKTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTV 313 (317)
T ss_dssp SCEEEEEECSSSSCEEEEET-T--------TEEEEECCT-T--SCCCEEEECC--SSCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCEEEEEECCCCCEEEEEEC-C--------CeEEEEECC-C--CcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 3322 345677776655443 2 235555554 2 1222333222 23455555543 3445566666643
Q ss_pred EE
Q 004866 340 RL 341 (726)
Q Consensus 340 ~l 341 (726)
+|
T Consensus 314 ~i 315 (317)
T d1vyhc1 314 KV 315 (317)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=95.93 E-value=0.61 Score=44.82 Aligned_cols=156 Identities=8% Similarity=0.033 Sum_probs=85.2
Q ss_pred eceeeCCCCCEEEEEEeCCCC------------cEEEEEEEECCCCceecccc-ccccceeEEecCCC----EEEEEEec
Q 004866 125 ELSEVSPDHKFLAYTMYDKDN------------DYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQ----ALIYVVTD 187 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~------------e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~----~l~y~~~~ 187 (726)
..+.+.|||+. |..+..+. ..-.||.++.++ +...+.. .....+++|+||++ .||++.
T Consensus 120 ndl~~d~~G~l--yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d-- 194 (314)
T d1pjxa_ 120 NDCAFDYEGNL--WITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE-- 194 (314)
T ss_dssp CEEEECTTSCE--EEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSEEEEEEEECTTSCEEEEEEEE--
T ss_pred cEEEECCCCCE--EEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcceeeeeEECCCCCcceeEEEEEe--
Confidence 34678899874 33343221 123577777754 3333221 22334689999876 465553
Q ss_pred CCCCCceEEEEEcCCCC--ceeEEeee-cC--CceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeecc-C
Q 004866 188 QNKRPYQIYCSIIGSTD--EDALLLEE-SN--ENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWEC-E 261 (726)
Q Consensus 188 ~~~~~~~l~~~~l~t~~--~~~lv~~~-~d--~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~ 261 (726)
....+||++++.... ....++.. .. ...--++++.++|+ |++... ....|+++|.+++.. ...+... .
T Consensus 195 --~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~--~~g~I~~~dp~~g~~-~~~i~~p~~ 268 (314)
T d1pjxa_ 195 --TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIEVFGPDGGQP-KMRIRCPFE 268 (314)
T ss_dssp --TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEEEECTTCBSC-SEEEECSSS
T ss_pred --ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEc--CCCEEEEEeCCCCEE-EEEEECCCC
Confidence 234589998875432 22222221 11 11223577888997 444433 235799999876321 2233322 2
Q ss_pred CceEEeeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 262 GLAHCIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 262 ~~~~~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
......+.++++.||+.+... ..|+++++.
T Consensus 269 ~~t~~afg~d~~~lyVt~~~~--------g~i~~~~~~ 298 (314)
T d1pjxa_ 269 KPSNLHFKPQTKTIFVTEHEN--------NAVWKFEWQ 298 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTT--------TEEEEEECS
T ss_pred CEEEEEEeCCCCEEEEEECCC--------CcEEEEECC
Confidence 223345677888888865432 358888876
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.032 Score=52.97 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=62.4
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCC-----CCCce
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQN-----KRPYQ 194 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~-----~~~~~ 194 (726)
.+..++|||||++||... .+|. |+++|+.+++...... ...+..++|+|+++.......+.. .....
T Consensus 164 ~v~~~~~s~~~~~l~~g~-~dg~----i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~ 238 (287)
T d1pgua2 164 KPSYISISPSETYIAAGD-VMGK----ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238 (287)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSC----EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred ceeEEEeccCcccccccc-cccc----ccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe
Confidence 356678999999998774 4553 8999999887543211 335677899987753322111110 11236
Q ss_pred EEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEE
Q 004866 195 IYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVF 243 (726)
Q Consensus 195 l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 243 (726)
|+++++..+.....+... .......+.|+||++ | ++...+..-.+|
T Consensus 239 i~iw~~~~~~~~~~~~~~-h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW 284 (287)
T d1pgua2 239 IFIYSVKRPMKIIKALNA-HKDGVNNLLWETPST-L-VSSGADACIKRW 284 (287)
T ss_dssp EEEEESSCTTCCEEETTS-STTCEEEEEEEETTE-E-EEEETTSCEEEE
T ss_pred EEEEECCCCCeEEEEeCC-CCCCeEEEEECCCCE-E-EEEECCCeEEEE
Confidence 888888765432222221 122235678899875 3 334333333343
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.032 Score=57.62 Aligned_cols=139 Identities=14% Similarity=0.014 Sum_probs=80.5
Q ss_pred EEECCCCcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccc---------h-------HHHHHHHHCCcEEEEEccC
Q 004866 469 DVPSHDGISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRW---------R-------SELKSLLDRGWVVAFADVR 532 (726)
Q Consensus 469 ~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~---------~-------~~~~~l~~~G~~v~~~d~R 532 (726)
.+...++..+..|++..++ ++ ...|+++++-||||.+.-... . ..-..|.+. ..++.+|.+
T Consensus 25 yl~~~~~~~lffw~~~s~~-~~-~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anllfIDqP 101 (452)
T d1ivya_ 25 YLKSSGSKHLHYWFVESQK-DP-ENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANVLYLESP 101 (452)
T ss_dssp EEECSTTEEEEEEEECCSS-CG-GGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEEEEECCS
T ss_pred eeecCCCceEEEEEEEcCC-CC-CCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCEEEEecC
Confidence 4555677788877664443 22 457999999999996521110 0 001223333 567888976
Q ss_pred CCCCCCCcccccccccCCCCcHHHHHHHH-HHHHHcCCCCCCcEEEEEecccHHHHHHHHHc---CCC-ceeEEEEeCCc
Q 004866 533 GGGGGGKKWHHDGRRTKKLNSIKDFISCA-RFLIEKEIVKEHKLAGWGYSAGGLLVAAAINC---CPD-LFRAVVLEVPF 607 (726)
Q Consensus 533 G~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~---~p~-~f~a~v~~~p~ 607 (726)
-+.|+...-.. .....-.....|+..++ +++...+.....++.|+|-||||..+-.++.. .+. -++++++..|+
T Consensus 102 vGtGfS~~~~~-~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~ 180 (452)
T d1ivya_ 102 AGVGFSYSDDK-FYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp TTSTTCEESSC-CCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred CCcccccCCCC-CCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCc
Confidence 55555332110 00011112245554544 44444444455689999999999887776643 232 47999999999
Q ss_pred cccc
Q 004866 608 LDAT 611 (726)
Q Consensus 608 ~d~~ 611 (726)
+|..
T Consensus 181 ~d~~ 184 (452)
T d1ivya_ 181 SSYE 184 (452)
T ss_dssp SBHH
T ss_pred cCch
Confidence 8753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.73 E-value=0.59 Score=44.98 Aligned_cols=162 Identities=9% Similarity=-0.046 Sum_probs=87.5
Q ss_pred eeceeeCCCCCEEEEEEeCCCC---cEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 124 EELSEVSPDHKFLAYTMYDKDN---DYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 124 ~~~~~~SPDG~~la~~~~~~g~---e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
.....+.|||+ | |..+..+. ..-.++.++.+++....+.. ......++|+||++.||++... ..+|++++
T Consensus 132 ~nd~~~d~~G~-l-~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~----~~~I~~~d 205 (319)
T d2dg1a1 132 IDDMVFDSKGG-F-YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT----ANRLHRIA 205 (319)
T ss_dssp EEEEEECTTSC-E-EEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG----GTEEEEEE
T ss_pred CcceeEEeccc-e-eecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc----CCceEEEE
Confidence 44567899997 3 33343332 13458888887765444322 2233569999999999988532 34899999
Q ss_pred cCCCC-ceeE-----EeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCC-------ceEE
Q 004866 200 IGSTD-EDAL-----LLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEG-------LAHC 266 (726)
Q Consensus 200 l~t~~-~~~l-----v~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-------~~~~ 266 (726)
+.... .... .........--++++.++|+ |++.... ...|+++|.++ .....+.-+.. ....
T Consensus 206 ~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~--~g~V~~~~p~G--~~l~~i~~P~~~~~~~~~~~~~ 280 (319)
T d2dg1a1 206 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYG--QGRVLVFNKRG--YPIGQILIPGRDEGHMLRSTHP 280 (319)
T ss_dssp ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEET--TTEEEEECTTS--CEEEEEECTTGGGTCSCBCCEE
T ss_pred EcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcC--CCEEEEECCCC--cEEEEEeCCCcCCCcCceeeeE
Confidence 86543 1111 11111111123577888897 5554432 34688888643 22333321111 1122
Q ss_pred eeeecCCEEEEEecCcccCCCCCCeEEEEeeCC
Q 004866 267 IVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 267 ~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~ 299 (726)
.+.+++..+|+.+..... .....|++++..
T Consensus 281 ~~~~~~~~~~~t~~~~~~---~~~g~l~~~~~~ 310 (319)
T d2dg1a1 281 QFIPGTNQLIICSNDIEM---GGGSMLYTVNGF 310 (319)
T ss_dssp EECTTSCEEEEEEECGGG---TCCEEEEEEECS
T ss_pred EEeCCCCEEEEEcCCCCc---CCceeEEEEeCC
Confidence 334455666666543211 124568888765
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.014 Score=59.03 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=63.2
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---------------ccccceeEEecCCCEEEEEEec
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---------------AVRVSNIAWAKDGQALIYVVTD 187 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---------------~~~~~~~~WspDg~~l~y~~~~ 187 (726)
.+..++|||||++|+-..+.. . ...|.++|+++|+.+.... ...+..++|+|||+.|+=...|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~-t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSN-S-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEET-T-EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCC-C-cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence 356778999999998876432 2 3568999999987654211 1235678999999977544322
Q ss_pred CCCCCceEEEEEcCCCCceeEEeeecCCce---EEEEEEcCCCcEE
Q 004866 188 QNKRPYQIYCSIIGSTDEDALLLEESNENV---YVNIRHTKDFHFV 230 (726)
Q Consensus 188 ~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~---~~~~~~s~Dg~~l 230 (726)
..|.++|+.+++. ..++....... ...+.++++|+.+
T Consensus 311 -----~~v~vWd~~~g~~-~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 311 -----GKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp -----SEEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred -----CEEEEEECCCCCE-EEEECCcCCcccCCccEEEECCCCCEE
Confidence 4788899988752 22222211111 0134678888865
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.95 Score=42.83 Aligned_cols=108 Identities=10% Similarity=0.087 Sum_probs=63.9
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCc
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDE 205 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~ 205 (726)
.+++||++||-+ ..+| .|.|||+.+++.+.... ...+..++|+||+ .|+-...| ..|..+++.....
T Consensus 18 c~~~~~~~l~tg-s~Dg----~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D-----~~i~iw~~~~~~~ 86 (355)
T d1nexb2 18 CLQFEDNYVITG-ADDK----MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD-----RTVRVWDIKKGCC 86 (355)
T ss_dssp EEEEETTEEEEE-ETTT----EEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETT-----CCEEEEETTTTEE
T ss_pred EEEECCCEEEEE-eCCC----eEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecc-----ccccccccccccc
Confidence 367899988765 3444 59999999998765322 3456789999975 44433222 3577777765532
Q ss_pred eeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 206 DALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 206 ~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.................+++++++++..+.. ..+.++|+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~iw~~~~ 127 (355)
T d1nexb2 87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRD---NTLHVWKLPK 127 (355)
T ss_dssp EEEECCCSSCEEEEEEEEETTEEEEEEEETT---SEEEEEECCC
T ss_pred ccccccccccccccccccccccceeeeecCC---CcEEEEEccC
Confidence 1111111111222334567888888766653 2466666654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.99 Score=41.98 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=95.5
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGS 202 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t 202 (726)
.++++.+-++.|.|+ +.... .|.+.++++.....+.. ......++..|.+..||++.... ....|++.+++.
T Consensus 82 ~~iAvD~~~~~lY~~-d~~~~---~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--~~~~I~r~~~dG 155 (263)
T d1npea_ 82 EGIALDHLGRTIFWT-DSQLD---RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHMDG 155 (263)
T ss_dssp EEEEEETTTTEEEEE-ETTTT---EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--SSCEEEEEETTS
T ss_pred cEEEEeccCCeEEEe-ccCCC---EEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC--CCcEEEEecCCC
Confidence 345666668877665 54433 58899998765433222 23456788889888899885432 234699999876
Q ss_pred CCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccCCceEEeeeecCCEEEEEecCc
Q 004866 203 TDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECEGLAHCIVEHHEGFLYLFTDAA 282 (726)
Q Consensus 203 ~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~ 282 (726)
.....++.. +-..-.++++.+.++.|++.... ...|..+++++ ...+.+..... .-..++.+++.||+.....
T Consensus 156 ~~~~~i~~~--~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~~g--~~~~~v~~~~~-~P~~lav~~~~lYwtd~~~ 228 (263)
T d1npea_ 156 TNRRILAQD--NLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQ--PGRRKVLEGLQ-YPFAVTSYGKNLYYTDWKT 228 (263)
T ss_dssp CCCEEEECT--TCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTE--EEEEEEEECCC-SEEEEEEETTEEEEEETTT
T ss_pred CCceeeeee--cccccceEEEeecCcEEEEEeCC--CCEEEEEECCC--CCeEEEECCCC-CcEEEEEECCEEEEEECCC
Confidence 544344322 22233467888889999887542 35788999876 33344443322 2234556788887765432
Q ss_pred ccCCCCCCeEEEEeeCC
Q 004866 283 KEGQEADNHYLLRCPVD 299 (726)
Q Consensus 283 ~~~~~~~~~~l~~~~~~ 299 (726)
..|++++..
T Consensus 229 --------~~I~~~~~~ 237 (263)
T d1npea_ 229 --------NSVIAMDLA 237 (263)
T ss_dssp --------TEEEEEETT
T ss_pred --------CEEEEEECC
Confidence 458888875
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=1.3 Score=41.28 Aligned_cols=197 Identities=8% Similarity=-0.024 Sum_probs=115.5
Q ss_pred ceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCce----ecccc--ccccceeEEecCCCEEEEEEecCCCCCceEEEEE
Q 004866 126 LSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGAL----CSKPQ--AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSI 199 (726)
Q Consensus 126 ~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~----~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~ 199 (726)
++.+.+..++|-|+ |.... .|+..++.+... ..+.. .....+++..+-++.||++.. ...+|.+.+
T Consensus 34 ~id~d~~~~~lYw~-D~~~~---~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~----~~~~I~v~~ 105 (266)
T d1ijqa1 34 ALDTEVASNRIYWS-DLSQR---MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSVAD 105 (266)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEEE
T ss_pred EEEEEeCCCEEEEE-ECCCC---EEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec----CCCEEEeEe
Confidence 45678888988665 54433 477777764321 11111 223455677667888999742 234788999
Q ss_pred cCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEE
Q 004866 200 IGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYL 277 (726)
Q Consensus 200 l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~ 277 (726)
+.......++....+.+ .++...|...+|+++.. +....|+..++++ ...+.+.... . .....+++.+++||+
T Consensus 106 ~~g~~~~~~~~~~~~~P--~~l~vd~~~g~ly~~~~-~~~~~I~r~~~dG--s~~~~l~~~~~~~p~gl~iD~~~~~lYw 180 (266)
T d1ijqa1 106 TKGVKRKTLFRENGSKP--RAIVVDPVHGFMYWTDW-GTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYW 180 (266)
T ss_dssp TTSSSEEEEEECTTCCE--EEEEEETTTTEEEEEEC-SSSCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred cCCceEEEEEcCCCCCc--ceEEEEcccCeEEEecc-CCCcceeEeccCC--CceecccccccceeeEEEeeccccEEEE
Confidence 87654334343322222 45777888889988753 3346799999987 3444554322 1 223456677888888
Q ss_pred EecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCC-CceEEEEeeeCCEEEEEEEeCCeeEEEEEecCCC
Q 004866 278 FTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQ-GLVVEDVDFCKTHMALILREGRTYRLCSVSLPLP 349 (726)
Q Consensus 278 ~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~ 349 (726)
.-.. ...|.+++++ . ..-+.++.... .....++++++++||++-.. ...|++++..++
T Consensus 181 ~d~~--------~~~I~~~~~d-G---~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~--~~~I~~~~~~~g 239 (266)
T d1ijqa1 181 VDSK--------LHSISSIDVN-G---GNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--NEAIFSANRLTG 239 (266)
T ss_dssp EETT--------TTEEEEEETT-S---CSCEEEEECTTTTSSEEEEEEETTEEEEEETT--TTEEEEEETTTC
T ss_pred ecCC--------cCEEEEEECC-C---CCEEEEEeCCCcccccEEEEEECCEEEEEECC--CCeEEEEECCCC
Confidence 6332 2458888887 2 22233433322 22355788889998887543 346777776543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.51 Score=44.65 Aligned_cols=153 Identities=10% Similarity=-0.029 Sum_probs=79.8
Q ss_pred eeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceeccccccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCce
Q 004866 127 SEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDED 206 (726)
Q Consensus 127 ~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~ 206 (726)
..+++||++|+... .+| .|+++|+.+++.+............++++++.|+....+ ..|+++++...+..
T Consensus 181 ~~~~~~~~~l~s~~-~dg----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~ 250 (342)
T d2ovrb2 181 YSLQFDGIHVVSGS-LDT----SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCL 250 (342)
T ss_dssp EEEEECSSEEEEEE-TTS----CEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEE
T ss_pred ccccCCCCEEEEEe-CCC----eEEEeecccceeeeEecccccceeEEecCCCEEEEEcCC-----CEEEEEeccccccc
Confidence 35788999987664 455 389999999887654322222223445556666544322 36888888766532
Q ss_pred eEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeec-cCC---ceE--EeeeecCCEEEEEec
Q 004866 207 ALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWE-CEG---LAH--CIVEHHEGFLYLFTD 280 (726)
Q Consensus 207 ~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~---~~~--~~~~~~g~~l~~~t~ 280 (726)
..+......... -..++.++++++..+.+ ..|.++|+.+++ ..+.+.. ... ... ..+++++ .++....
T Consensus 251 ~~~~~~~~~~~~-~~~~~~~~~~~~s~s~D---g~i~iwd~~tg~-~i~~~~~~~~~~~~~~v~~v~~s~~~-~~la~g~ 324 (342)
T d2ovrb2 251 QTLQGPNKHQSA-VTCLQFNKNFVITSSDD---GTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGS 324 (342)
T ss_dssp EEECSTTSCSSC-EEEEEECSSEEEEEETT---SEEEEEETTTCC-EEEEEEECTTGGGTCEEEEEEECSSE-EEEEEEC
T ss_pred ccccccceeeec-eeecccCCCeeEEEcCC---CEEEEEECCCCC-EEEEEecccCCCCCCCEEEEEECCCC-CEEEEEe
Confidence 222211111111 12345567777655443 468889998743 2233322 111 111 2334544 3444444
Q ss_pred CcccCCCCCCeEEEEeeCC
Q 004866 281 AAKEGQEADNHYLLRCPVD 299 (726)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~ 299 (726)
.++. ...+|+..|++
T Consensus 325 ~dGt----~~~~l~~~Df~ 339 (342)
T d2ovrb2 325 RNGT----EETKLLVLDFD 339 (342)
T ss_dssp SSSS----SCCEEEEEECC
T ss_pred CCCC----CeeEEEEEeCC
Confidence 4332 13567777775
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.21 Score=50.69 Aligned_cols=132 Identities=16% Similarity=0.051 Sum_probs=74.0
Q ss_pred CcEEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchHH---------------HHHHHHCCcEEEEEccCCCCCCCC
Q 004866 475 GISVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRSE---------------LKSLLDRGWVVAFADVRGGGGGGK 539 (726)
Q Consensus 475 G~~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---------------~~~l~~~G~~v~~~d~RG~g~~g~ 539 (726)
+..+..|++...+ .+ .+.|+||++-||||.+.-..+..+ -..|.+. ..++.+|.+-+.|+..
T Consensus 27 ~~~lfyw~~~s~~-~~-~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~~-anllfiD~PvGtGfSy 103 (421)
T d1wpxa1 27 DKHFFFWTFESRN-DP-AKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSN-ATVIFLDQPVNVGFSY 103 (421)
T ss_dssp CCEEEEEEECCSS-CT-TTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGGS-SEEEEECCSTTSTTCB
T ss_pred CceEEEEEEEeCC-CC-CCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCcccccc-cCEEEEecCCCCCcee
Confidence 5678776654332 23 457999999999996521111000 0122222 5688888665555543
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHHc-CC-C-CCCcEEEEEecccHHHHHHHHHc---CCC---ceeEEEEeCCcccc
Q 004866 540 KWHHDGRRTKKLNSIKDFISCARFLIEK-EI-V-KEHKLAGWGYSAGGLLVAAAINC---CPD---LFRAVVLEVPFLDA 610 (726)
Q Consensus 540 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~-~-d~~ri~i~G~S~GG~l~~~~~~~---~p~---~f~a~v~~~p~~d~ 610 (726)
.- ......-....+|+.++++...+. +. . -...+.|+|-||||..+-.++.+ ..+ -+++++...|++|.
T Consensus 104 ~~--~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~dp 181 (421)
T d1wpxa1 104 SG--SSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDP 181 (421)
T ss_dssp CS--SCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCCH
T ss_pred cC--CccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCcccc
Confidence 21 111111112344555555444432 21 1 23579999999999877666532 122 37899999998886
Q ss_pred c
Q 004866 611 T 611 (726)
Q Consensus 611 ~ 611 (726)
.
T Consensus 182 ~ 182 (421)
T d1wpxa1 182 L 182 (421)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.45 E-value=0.072 Score=53.05 Aligned_cols=84 Identities=21% Similarity=0.126 Sum_probs=50.7
Q ss_pred CCccEEEEEcC--CCCCCC---CccchH----HHHHHHHCCcEEEEEccCCCCCCCCcccccccccCCCCcHHHHHHHHH
Q 004866 492 NQNPGLLHGHG--AYGELL---DKRWRS----ELKSLLDRGWVVAFADVRGGGGGGKKWHHDGRRTKKLNSIKDFISCAR 562 (726)
Q Consensus 492 ~~~P~vl~~hG--g~~~~~---~~~~~~----~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~ 562 (726)
.++|+ |++|| |++... -..|.. ..+.|.+.|+.|+.+.+...+ +.+|=...+.
T Consensus 6 ~~yPI-VLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~~-----------------S~~~RA~eL~ 67 (388)
T d1ku0a_ 6 NDAPI-VLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLS-----------------SNWDRACEAY 67 (388)
T ss_dssp CCCCE-EEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSSB-----------------CHHHHHHHHH
T ss_pred CCCCE-EEeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccCCcc-----------------CHHHHHHHHH
Confidence 46785 56788 443211 122332 456788899999999986432 3333333333
Q ss_pred HHHHcCCC---------------------------CCCcEEEEEecccHHHHHHHHHc
Q 004866 563 FLIEKEIV---------------------------KEHKLAGWGYSAGGLLVAAAINC 593 (726)
Q Consensus 563 ~l~~~~~~---------------------------d~~ri~i~G~S~GG~l~~~~~~~ 593 (726)
+-++.+.+ ..+||-|+||||||..+=.++..
T Consensus 68 ~~I~~~~~d~G~~hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 68 AQLVGGTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp HHHHCEEEECCHHHHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHH
T ss_pred HHHhhhhhhhhHhHHhhhcccccCccCcccccccccCCceeEeecccccHHHHHHHHH
Confidence 33433222 23589999999999887666653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.21 E-value=3.4 Score=38.70 Aligned_cols=150 Identities=14% Similarity=0.072 Sum_probs=81.8
Q ss_pred ceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCC
Q 004866 170 SNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAAD 249 (726)
Q Consensus 170 ~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~ 249 (726)
.++.|.+++..|||+-. ...+|++++..+++. .++..+... ..+.+.+||+.++ ... ..|+++|.++
T Consensus 21 Egp~wd~~~~~l~wvDi----~~~~I~r~d~~~g~~--~~~~~~~~~--~~i~~~~dg~l~v-a~~----~gl~~~d~~t 87 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI----LERELHELHLASGRK--TVHALPFMG--SALAKISDSKQLI-ASD----DGLFLRDTAT 87 (295)
T ss_dssp EEEEEETTTTEEEEEEG----GGTEEEEEETTTTEE--EEEECSSCE--EEEEEEETTEEEE-EET----TEEEEEETTT
T ss_pred eCCeEECCCCEEEEEEC----CCCEEEEEECCCCeE--EEEECCCCc--EEEEEecCCCEEE-EEe----CccEEeeccc
Confidence 46899998889999843 234899999988643 234333322 3456778887654 332 3599999988
Q ss_pred CCCCeEEeeccCCc---eE---EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEe
Q 004866 250 PFSGLTLIWECEGL---AH---CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVD 323 (726)
Q Consensus 250 ~~~~~~~l~~~~~~---~~---~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~ 323 (726)
++.+.+.....+ .. ..++++|. ||+.+...... .....+++.+-. +...+...- ....++.
T Consensus 88 --g~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~--~~~g~l~~~~~g------~~~~~~~~~--~~~Ng~~ 154 (295)
T d2ghsa1 88 --GVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE--TGAGSIYHVAKG------KVTKLFADI--SIPNSIC 154 (295)
T ss_dssp --CCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC--TTCEEEEEEETT------EEEEEEEEE--SSEEEEE
T ss_pred --ceeeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc--ccceeEeeecCC------cEEEEeecc--CCcceee
Confidence 455555543221 11 23455554 66665422110 113456666422 233333211 1123444
Q ss_pred ee--CCEEEEEEEeCCeeEEEEEecC
Q 004866 324 FC--KTHMALILREGRTYRLCSVSLP 347 (726)
Q Consensus 324 ~~--~~~lv~~~~~~g~~~l~~~~l~ 347 (726)
+. ++.+++.... ...|++++++
T Consensus 155 ~s~d~~~l~~~dt~--~~~I~~~~~d 178 (295)
T d2ghsa1 155 FSPDGTTGYFVDTK--VNRLMRVPLD 178 (295)
T ss_dssp ECTTSCEEEEEETT--TCEEEEEEBC
T ss_pred ecCCCceEEEeecc--cceeeEeeec
Confidence 43 4566666543 3457777665
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.00 E-value=0.24 Score=49.27 Aligned_cols=42 Identities=5% Similarity=-0.035 Sum_probs=31.0
Q ss_pred EEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecC
Q 004866 147 YFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQ 188 (726)
Q Consensus 147 ~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~ 188 (726)
...+.++|.++.+...... ...-....+++||+++|++..+.
T Consensus 172 ~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNS 214 (459)
T d1fwxa2 172 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 214 (459)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred ceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccc
Confidence 3456789999987654322 44556899999999999997654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.98 E-value=0.49 Score=46.96 Aligned_cols=99 Identities=8% Similarity=0.015 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc---ccccceeEEecCCCEEEEEEecCCC-----------C----
Q 004866 130 SPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ---AVRVSNIAWAKDGQALIYVVTDQNK-----------R---- 191 (726)
Q Consensus 130 SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~-----------~---- 191 (726)
.+|||+| |+-|...+ .|.++|+++.+..++.. .....++.-.+++++.|.....+.. .
T Consensus 96 tyDGryl-FVNDkan~---RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y 171 (459)
T d1fwxa2 96 KYDGRFL-FMNDKANT---RVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 171 (459)
T ss_dssp EEEEEEE-EEEETTTT---EEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred ccceeEE-EEEcCCCc---eEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence 5699997 55465443 58999999988765432 2234556677777776665432210 0
Q ss_pred CceEEEEEcCCCC-ceeEEeeecCCceEEEEEEcCCCcEEEEEEcC
Q 004866 192 PYQIYCSIIGSTD-EDALLLEESNENVYVNIRHTKDFHFVCVHTFS 236 (726)
Q Consensus 192 ~~~l~~~~l~t~~-~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~ 236 (726)
...+..+|..+.+ ...+... .+ ...+.+++||||+++++..
T Consensus 172 ~~~~t~ID~~tm~V~~QV~V~-g~---ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 172 VNVFTAVDADKWEVAWQVLVS-GN---LDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SC---CCCEEECSSSSEEEEEESC
T ss_pred ceEEEEEecCCceEEEEeeeC-CC---hhccccCCCCCEEEEEecc
Confidence 1224567776655 2222221 11 1246789999999998743
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.34 E-value=0.12 Score=49.29 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=45.0
Q ss_pred EeeceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecC
Q 004866 123 YEELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQ 188 (726)
Q Consensus 123 ~~~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~ 188 (726)
.+..++|||+|++||-+. .+| .|++||+.+++.+.... .......+|+|||+.|++...++
T Consensus 253 ~v~~l~~sp~~~~lasg~-~Dg----~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd 314 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAG-SDG----IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp CEEEEEECTTTCCEEEEE-TTS----CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred cceeEEecCCccEEEEEC-CCC----EEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence 345678999999987764 445 39999999998765432 33445688999999998876553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=91.75 E-value=5.2 Score=37.33 Aligned_cols=156 Identities=8% Similarity=-0.001 Sum_probs=75.8
Q ss_pred cceeEEecCCCEEEEEEecCCCCCceEEEEEcCCCCceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCC
Q 004866 169 VSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGSTDEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAA 248 (726)
Q Consensus 169 ~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 248 (726)
..+++++|||+ ||++... ..+||+++.+.. ...+.. .. ....++++++||+.++...... .++.++..
T Consensus 30 ~e~iAv~pdG~-l~vt~~~----~~~I~~i~p~g~--~~~~~~-~~-~~~~gla~~~dG~l~v~~~~~~---~~~~~~~~ 97 (302)
T d2p4oa1 30 LENLASAPDGT-IFVTNHE----VGEIVSITPDGN--QQIHAT-VE-GKVSGLAFTSNGDLVATGWNAD---SIPVVSLV 97 (302)
T ss_dssp EEEEEECTTSC-EEEEETT----TTEEEEECTTCC--EEEEEE-CS-SEEEEEEECTTSCEEEEEECTT---SCEEEEEE
T ss_pred cCCEEECCCCC-EEEEeCC----CCEEEEEeCCCC--EEEEEc-CC-CCcceEEEcCCCCeEEEecCCc---eEEEEEec
Confidence 34689999997 7776432 358999886542 222222 22 2334688999999544433322 24444443
Q ss_pred CCCCCeEEeeccCCc--eE-EeeeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCc------eEEeecCCCceE
Q 004866 249 DPFSGLTLIWECEGL--AH-CIVEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTW------ESVFIDDQGLVV 319 (726)
Q Consensus 249 ~~~~~~~~l~~~~~~--~~-~~~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~v~~~~~~~~l 319 (726)
........+...... .. ..+.++ +.+|+... .. ..+++++.. ......| ............
T Consensus 98 ~~~~~~~~~~~~~~~~~~n~i~~~~~-g~~~v~~~-~~-------~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T d2p4oa1 98 KSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADS-YR-------GAIWLIDVV-QPSGSIWLEHPMLARSNSESVFPAA 167 (302)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEET-TT-------TEEEEEETT-TTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ccccceeeccccCCccccceeEEccC-CCEEeecc-cc-------ccceeeecc-CCcceeEecCCccceeeccCccccc
Confidence 333344444332221 11 123333 45554432 21 235555544 1100000 000001112234
Q ss_pred EEEeeeCCEEEEEEEeCCeeEEEEEecCC
Q 004866 320 EDVDFCKTHMALILREGRTYRLCSVSLPL 348 (726)
Q Consensus 320 ~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 348 (726)
.++...++++++....+ .++++++...
T Consensus 168 ngi~~~~~~l~~~~~~~--~~i~~~~~~~ 194 (302)
T d2p4oa1 168 NGLKRFGNFLYVSNTEK--MLLLRIPVDS 194 (302)
T ss_dssp EEEEEETTEEEEEETTT--TEEEEEEBCT
T ss_pred ccccccCCceeeecCCC--CeEEeccccc
Confidence 56667788877766544 4677777653
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=91.75 E-value=0.85 Score=46.79 Aligned_cols=134 Identities=15% Similarity=0.089 Sum_probs=69.1
Q ss_pred EEEEEEEEcCCCCCCCCccEEEEEcCCCCCCCCccchH---------------HHHHHHHCCcEEEEEccCCCCCCCCcc
Q 004866 477 SVPLTIIYSPKYKKENQNPGLLHGHGAYGELLDKRWRS---------------ELKSLLDRGWVVAFADVRGGGGGGKKW 541 (726)
Q Consensus 477 ~i~~~l~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---------------~~~~l~~~G~~v~~~d~RG~g~~g~~~ 541 (726)
.+-.|++-..........|+||++-||||.+.-..+.. .-..|.+. ..++.+|.+-+.||...-
T Consensus 50 ~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~~-an~lfIDqPvGvGfSy~~ 128 (483)
T d1ac5a_ 50 EYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWISK-GDLLFIDQPTGTGFSVEQ 128 (483)
T ss_dssp EEEEEEEECSCSGGGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGGT-SEEEEECCSTTSTTCSSC
T ss_pred eEEEEEEEecCCCCCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCccccc-CCEEEEeCCCCcCeeecC
Confidence 44445553333222233599999999999652111000 00122222 567888876555554221
Q ss_pred ccc-ccc--cCCCCc----HHHHHHHHH-HHHHcCCCCCCcEEEEEecccHHHHHHHHHcC-----------CC-ceeEE
Q 004866 542 HHD-GRR--TKKLNS----IKDFISCAR-FLIEKEIVKEHKLAGWGYSAGGLLVAAAINCC-----------PD-LFRAV 601 (726)
Q Consensus 542 ~~~-~~~--~~~~~~----~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~-----------p~-~f~a~ 601 (726)
... ... .....+ ..|+...++ |+...+..-..++.|+|-||||..+-.++..- +. -++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi 208 (483)
T d1ac5a_ 129 NKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKAL 208 (483)
T ss_dssp CSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEE
T ss_pred CCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccceee
Confidence 100 000 011122 233333332 33333333457899999999998776665431 11 37888
Q ss_pred EEeCCccccc
Q 004866 602 VLEVPFLDAT 611 (726)
Q Consensus 602 v~~~p~~d~~ 611 (726)
+...|++|..
T Consensus 209 ~IGNg~~d~~ 218 (483)
T d1ac5a_ 209 LIGNGWIDPN 218 (483)
T ss_dssp EEEEECCCHH
T ss_pred eecCCccChh
Confidence 8888877653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.26 E-value=10 Score=34.23 Aligned_cols=188 Identities=10% Similarity=0.004 Sum_probs=90.6
Q ss_pred eceeeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc-ccccceeEEecCCCEEEEEEecCCCCCceEEEEEcCCC
Q 004866 125 ELSEVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ-AVRVSNIAWAKDGQALIYVVTDQNKRPYQIYCSIIGST 203 (726)
Q Consensus 125 ~~~~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~l~~~~l~t~ 203 (726)
.+++++|||+. |..+..+ ..+.+.+..++..+.... ......+++.++|+ ||++... ..++++.+..+.
T Consensus 60 ~gvav~~~g~i--~v~d~~~---~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~----~~~~~~~~~~~~ 129 (260)
T d1rwia_ 60 QGLAVDGAGTV--YVTDFNN---RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG----NNRVVKLAAGSK 129 (260)
T ss_dssp CCEEECTTCCE--EEEETTT---EEEEECTTCSCCEECCCCSCCSEEEEEECTTCC-EEEEEGG----GTEEEEECTTCS
T ss_pred eEEEEcCCCCE--EEeeeee---ceeeeeeeccceeeeeeeeeeecccccccccce-eEeeccc----cccccccccccc
Confidence 34678999973 5556544 235554444443332111 23446788999986 5555322 235666665543
Q ss_pred CceeEEeeecCCceEEEEEEcCCCcEEEEEEcCCCceEEEEEeCCCCCCCeEEeeccC-C-ceEEeeeecCCEEEEEecC
Q 004866 204 DEDALLLEESNENVYVNIRHTKDFHFVCVHTFSTTSSKVFLINAADPFSGLTLIWECE-G-LAHCIVEHHEGFLYLFTDA 281 (726)
Q Consensus 204 ~~~~lv~~~~d~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~-~~~~~~~~~g~~l~~~t~~ 281 (726)
... .+.........++.++++|+ +++... ....|+.++.++. ....+.... . .....++++| .||+. +.
T Consensus 130 ~~~--~~~~~~~~~p~~i~~~~~g~-~~v~~~--~~~~i~~~d~~~~--~~~~~~~~~~~~p~gi~~d~~g-~l~vs-d~ 200 (260)
T d1rwia_ 130 TQT--VLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEAESN--NQVVLPFTDITAPWGIAVDEAG-TVYVT-EH 200 (260)
T ss_dssp SCE--ECCCCSCCSCCEEEECTTCC-EEEEEG--GGTEEEEECTTTC--CEEECCCSSCCSEEEEEECTTC-CEEEE-ET
T ss_pred eee--eeeecccCCcceeeecCCCC-Eeeecc--ccccccccccccc--eeeeeeccccCCCccceeeeee-eeeee-ec
Confidence 221 22111111112567788987 444433 2357888887652 222221111 1 1122345555 45554 43
Q ss_pred cccCCCCCCeEEEEeeCCCCCCCCCceEEeecCCCceEEEEeeeC-CEEEEEEEeCCeeEEEEEe
Q 004866 282 AKEGQEADNHYLLRCPVDASFPSRTWESVFIDDQGLVVEDVDFCK-THMALILREGRTYRLCSVS 345 (726)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~ 345 (726)
. +.+|++++.+ . . ...++....-....++.+.. +.|++.... ..+|.+++
T Consensus 201 ~-------~~~i~~~~~~-~---~-~~~~~~~~~~~~P~~i~~d~~g~l~vad~~--~~rI~~i~ 251 (260)
T d1rwia_ 201 N-------TNQVVKLLAG-S---T-TSTVLPFTGLNTPLAVAVDSDRTVYVADRG--NDRVVKLT 251 (260)
T ss_dssp T-------TTEEEEECTT-C---S-CCEECCCCSCCCEEEEEECTTCCEEEEEGG--GTEEEEEC
T ss_pred C-------CCEEEEEeCC-C---C-eEEEEccCCCCCeEEEEEeCCCCEEEEECC--CCEEEEEe
Confidence 2 2457777654 1 1 22233222222345666654 456655332 34566554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.75 E-value=14 Score=32.68 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=32.9
Q ss_pred eeCCCCCEEEEEEeCCCCcEEEEEEEECCCCceecccc--ccccceeEEecCCCEEEEE
Q 004866 128 EVSPDHKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQ--AVRVSNIAWAKDGQALIYV 184 (726)
Q Consensus 128 ~~SPDG~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~--~~~~~~~~WspDg~~l~y~ 184 (726)
.+++||++||-+. .+| .|.|||+.+++.+.... ...+..+ ++|++.|+-.
T Consensus 20 c~~~d~~~l~sgs-~Dg----~i~vWd~~~~~~~~~l~~H~~~V~~v--~~~~~~l~s~ 71 (293)
T d1p22a2 20 CLQYDDQKIVSGL-RDN----TIKIWDKNTLECKRILTGHTGSVLCL--QYDERVIITG 71 (293)
T ss_dssp EEECCSSEEEEEE-SSS----CEEEEESSSCCEEEEECCCSSCEEEE--ECCSSEEEEE
T ss_pred EEEEcCCEEEEEe-CCC----eEEEEECCCCcEEEEEecCCCCEeee--ecccceeecc
Confidence 4789999987664 455 39999999998765422 2233444 4477766544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=83.67 E-value=19 Score=34.23 Aligned_cols=202 Identities=11% Similarity=0.113 Sum_probs=91.9
Q ss_pred eCCC--CCEEEEEEeCCCCcEEEEEEEECCCCceecccccccccee----EEecCCC--EEEEEEecCCCCCceEEEEEc
Q 004866 129 VSPD--HKFLAYTMYDKDNDYFTLSVRNLNSGALCSKPQAVRVSNI----AWAKDGQ--ALIYVVTDQNKRPYQIYCSII 200 (726)
Q Consensus 129 ~SPD--G~~la~~~~~~g~e~~~l~v~dl~tg~~~~~~~~~~~~~~----~WspDg~--~l~y~~~~~~~~~~~l~~~~l 200 (726)
++|. .+.|.++.++.++ |+++||+ |+.++....++..++ .+.-+++ -|++.+.. ......|+.+.+
T Consensus 33 ~n~~~p~~SlI~gTdK~~G----l~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR-~~~~~~l~~~~i 106 (353)
T d1h6la_ 33 LDPKNPQNSKLITTNKKSG----LAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNR-SEGKNTIEIYAI 106 (353)
T ss_dssp CCSSCGGGCEEEEEETTSC----CEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEEC-CTTTCEEEEEEE
T ss_pred cCCCCcCccEEEEEcCcCC----EEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCC-cCcceeEEEEEe
Confidence 3453 4556787787764 9999996 555543333322222 2333443 34454332 222224444443
Q ss_pred CCCCceeEEee--------ecCCceEEEEEEcCC-CcEEEEEEcCCCceEEEEEeCCCC-CCC---eEEeeccCCceEEe
Q 004866 201 GSTDEDALLLE--------ESNENVYVNIRHTKD-FHFVCVHTFSTTSSKVFLINAADP-FSG---LTLIWECEGLAHCI 267 (726)
Q Consensus 201 ~t~~~~~lv~~--------~~d~~~~~~~~~s~D-g~~l~~~~~~~~~~~l~~~d~~~~-~~~---~~~l~~~~~~~~~~ 267 (726)
.........+. .....|-+-+..++. |+..+|.....+.-+.|.+..... .-. .+.+........+.
T Consensus 107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCV 186 (353)
T d1h6la_ 107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMA 186 (353)
T ss_dssp ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEE
T ss_pred cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEE
Confidence 21111111111 111222222334654 665566666555556666654331 111 12222222233455
Q ss_pred eeecCCEEEEEecCcccCCCCCCeEEEEeeCCCCCCCCCceEEeec-C---CCceEEEEeeeC---CEEEEEEEeCCeeE
Q 004866 268 VEHHEGFLYLFTDAAKEGQEADNHYLLRCPVDASFPSRTWESVFID-D---QGLVVEDVDFCK---THMALILREGRTYR 340 (726)
Q Consensus 268 ~~~~g~~l~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~---~~~~l~~~~~~~---~~lv~~~~~~g~~~ 340 (726)
++...++||+.-. + ..+++++.+ ++...-..++.. . -...++++.+.. +.=|++.+..|..+
T Consensus 187 vDde~~~LyisEE-~--------~Giw~~~a~--~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~ 255 (353)
T d1h6la_ 187 ADDEYGSLYIAEE-D--------EAIWKFSAE--PDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSS 255 (353)
T ss_dssp EETTTTEEEEEET-T--------TEEEEEESS--TTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred EeCCCCcEEEecC-c--------cceEEEEec--cCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCe
Confidence 6666677777533 2 236777654 122222222221 1 134678877652 22233344446667
Q ss_pred EEEEecC
Q 004866 341 LCSVSLP 347 (726)
Q Consensus 341 l~~~~l~ 347 (726)
..+++..
T Consensus 256 f~vydr~ 262 (353)
T d1h6la_ 256 YAIYERQ 262 (353)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 7777754
|